--- survival-2.41-3.orig/debian/changelog +++ survival-2.41-3/debian/changelog @@ -0,0 +1,461 @@ +survival (2.41-3-1) unstable; urgency=medium + + * New upstream release + + -- Dirk Eddelbuettel Tue, 04 Apr 2017 15:28:25 -0500 + +survival (2.41-2-1) unstable; urgency=medium + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + * debian/control: Add Depends: on ${misc:Depends} + + -- Dirk Eddelbuettel Fri, 17 Mar 2017 19:39:51 -0500 + +survival (2.40-1-1) unstable; urgency=medium + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + * debian/control: Set Standards-Version: to current version + + -- Dirk Eddelbuettel Mon, 31 Oct 2016 19:55:45 -0500 + +survival (2.39-5-1) unstable; urgency=medium + + * New upstream release + + -- Dirk Eddelbuettel Sun, 26 Jun 2016 09:53:35 -0500 + +survival (2.39-4-2) unstable; urgency=medium + + * debian/compat: Created + + * debian/control: Set Build-Depends: to current R version + * debian/control: Set Standards-Version: to current version + + -- Dirk Eddelbuettel Sun, 26 Jun 2016 07:49:09 -0500 + +survival (2.39-4-1) unstable; urgency=medium + + * New upstream release + + -- Dirk Eddelbuettel Fri, 13 May 2016 21:55:53 -0500 + +survival (2.39-3-1) unstable; urgency=medium + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + + -- Dirk Eddelbuettel Mon, 09 May 2016 21:45:06 -0500 + +survival (2.39-2-1) unstable; urgency=medium + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + * debian/control: Add new (Build-)Depends: r-cran-matrix + + -- Dirk Eddelbuettel Sun, 17 Apr 2016 09:43:21 -0500 + +survival (2.38-3-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + + -- Dirk Eddelbuettel Thu, 02 Jul 2015 04:06:27 -0500 + +survival (2.38-2-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + + -- Dirk Eddelbuettel Fri, 12 Jun 2015 07:03:07 -0500 + +survival (2.38-1-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + * debian/control: Set Standards-Version: to current version + + -- Dirk Eddelbuettel Tue, 24 Feb 2015 07:01:45 -0600 + +survival (2.37-7-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Wed, 22 Jan 2014 14:24:35 -0600 + +survival (2.37-6-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + + -- Dirk Eddelbuettel Thu, 16 Jan 2014 22:51:45 -0600 + +survival (2.37-4-2) unstable; urgency=low + + * debian/control: Set Build-Depends: to current R version + + * (Re-)building with R 3.0.0 (beta) + + -- Dirk Eddelbuettel Mon, 25 Mar 2013 21:37:43 -0500 + +survival (2.37-4-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Tue, 26 Feb 2013 20:19:00 -0600 + +survival (2.37-2-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + * debian/control: Set Standards-Version: to current version + + -- Dirk Eddelbuettel Mon, 10 Dec 2012 15:20:12 -0600 + +survival (2.36-14-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Wed, 25 Apr 2012 17:36:50 -0500 + +survival (2.36-13-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set Build-Depends: to current R version + * debian/control: Change Depends to ${R:Depends} + * debian/control: Set Standards-Version: to current version + + -- Dirk Eddelbuettel Wed, 25 Apr 2012 07:41:58 -0500 + +survival (2.36-12-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set Standards-Version: to current version + * debian/control: Set (Build-)Depends: to current R version + + -- Dirk Eddelbuettel Mon, 06 Feb 2012 17:16:10 -0600 + +survival (2.36-10-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set Standards-Version: to current version + * debian/control: Set (Build-)Depends: to current R version + + -- Dirk Eddelbuettel Sat, 01 Oct 2011 07:52:01 -0500 + +survival (2.36-9-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Sun, 01 May 2011 06:31:19 -0500 + +survival (2.36-8-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set (Build-)Depends: to current R version + + -- Dirk Eddelbuettel Thu, 14 Apr 2011 16:37:09 -0500 + +survival (2.36-5-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Mon, 21 Feb 2011 13:33:28 -0600 + +survival (2.36-4-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Fri, 18 Feb 2011 14:56:54 -0600 + +survival (2.36-3-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Wed, 16 Feb 2011 07:36:51 -0600 + +survival (2.36-2-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Mon, 22 Nov 2010 14:30:16 -0600 + +survival (2.36-1-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set Standards-Version: to current version + * debian/control: Set (Build-)Depends: to current R version + + -- Dirk Eddelbuettel Sun, 21 Nov 2010 10:16:35 -0600 + +survival (2.35-8-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Tue, 22 Dec 2009 09:09:05 -0600 + +survival (2.35-7-2) unstable; urgency=low + + * Rebuilt for R 2.10.0 to work with new R-internal help file conversion + + * debian/control: Set (Build-)Depends: to current R version + + -- Dirk Eddelbuettel Mon, 02 Nov 2009 21:20:36 -0600 + +survival (2.35-7-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Wed, 09 Sep 2009 14:26:43 -0500 + +survival (2.35-6-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Mon, 07 Sep 2009 20:10:40 -0500 + +survival (2.35-5-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set (Build-)Depends: to current R version + * debian/control: Set Standards-Version: to current version + + -- Dirk Eddelbuettel Tue, 25 Aug 2009 12:41:19 -0500 + +survival (2.35-4-1) unstable; urgency=low + + * New upstream release + + * debian/control: Set (Build-)Depends: to current R version + + -- Dirk Eddelbuettel Wed, 01 Apr 2009 17:37:03 -0500 + +survival (2.35-3-1) unstable; urgency=low + + * New upstream release + + * debian/control: Changed Section: to new section 'gnu-r' + + * debian/control: Set (Build-)Depends: to current R version + * debian/control: Update Standards-Version: to current version + + -- Dirk Eddelbuettel Sat, 21 Mar 2009 10:56:18 -0500 + +survival (2.34-1-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Wed, 02 Apr 2008 20:44:52 -0500 + +survival (2.34-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Tue, 16 Oct 2007 17:41:23 -0500 + +survival (2.33-1) unstable; urgency=low + + * New upstream release + * Built with R 2.6.0, so setting (Build-)Depends: to + 'r-base-(core|dev) >> 2.5.1' to prevent move to testing before R 2.6.0 + + -- Dirk Eddelbuettel Tue, 09 Oct 2007 17:28:19 -0500 + +survival (2.32-1) unstable; urgency=low + + * New upstream release + * debian/control: (Build-)Depends: updated to r-base-dev (>= 2.5.0~20070618) + + -- Dirk Eddelbuettel Mon, 18 Jun 2007 19:18:00 -0500 + +survival (2.31-1) unstable; urgency=low + + * New upstream release + * debian/control: Updated (Build-)Depends: to 'r-base-core (>= 2.4.1)' + + -- Dirk Eddelbuettel Thu, 1 Feb 2007 10:36:16 -0600 + +survival (2.30-1) unstable; urgency=low + + * New upstream release + + * debian/control: Upgraded (Build-)Depends: to 'r-base-dev (>= 2.4.0)' + + -- Dirk Eddelbuettel Thu, 30 Nov 2006 20:51:43 -0600 + +survival (2.29-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Fri, 29 Sep 2006 15:02:41 -0500 + +survival (2.28-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Tue, 29 Aug 2006 21:35:04 -0500 + +survival (2.26-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Fri, 19 May 2006 17:02:08 -0500 + +survival (2.25-1) unstable; urgency=low + + * New upstream release + + * debian/control: Standards-Version: increased to 3.7.2 + + -- Dirk Eddelbuettel Wed, 17 May 2006 20:11:05 -0500 + +survival (2.24-2) unstable; urgency=low + + * debian/rules: Simplified to cdbs-based one-liner sourcing r-cran.mk + (but overriding the default library location as this package is part + of the r-recommended bundle which install into /usr/lib/R/library) + * debian/control: Hence Build-Depends: updated to r-base-dev (>= 2.3.0) + + * debian/control: Standards-Version: increased to 3.7.0, no changes needed + + -- Dirk Eddelbuettel Mon, 8 May 2006 17:44:31 -0500 + +survival (2.24-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Sat, 15 Apr 2006 17:56:25 -0500 + +survival (2.23-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Fri, 7 Apr 2006 17:17:20 -0500 + +survival (2.22-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Fri, 17 Mar 2006 20:26:06 -0600 + +survival (2.21-1) unstable; urgency=low + + * New upstream release + * debian/watch: One more fix for regular expression + + -- Dirk Eddelbuettel Sun, 12 Feb 2006 17:37:23 -0600 + +survival (2.20-1) unstable; urgency=low + + * New upstream release + * debian/post{inst,rm}: No longer need to call /usr/bin/R for html index + + -- Dirk Eddelbuettel Fri, 30 Sep 2005 20:15:38 -0500 + +survival (2.19-1) unstable; urgency=low + + * New upstream release + * debian/watch: Corrected regular expression (thanks, Rafael Laboissier) + * debian/post{inst,rm}: Call /usr/bin/R explicitly (thanks, Kurt Hornik) + * debian/control: Upgraded Standards-Version: to 3.6.2.1 + + -- Dirk Eddelbuettel Sat, 10 Sep 2005 19:13:26 -0500 + +survival (2.18-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Fri, 10 Jun 2005 21:05:44 -0500 + +survival (2.17-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Wed, 6 Apr 2005 21:01:34 -0500 + +survival (2.16-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Tue, 16 Nov 2004 21:28:50 -0600 + +survival (2.15-2) unstable; urgency=low + + * debian/rules: Do not run 'R CMD check' on all architectures + + -- Dirk Eddelbuettel Thu, 11 Nov 2004 13:34:49 -0600 + +survival (2.15-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Wed, 27 Oct 2004 20:55:44 -0500 + +survival (2.13.2-1) unstable; urgency=low + + * New upstream release + + * Built under R 2.0.0 + * debian/control: Updated Build-Depends: and Depends: accordingly + * debian/rules: Updated as required under R 2.0.0 and added 'R CMD check' + + * debian/watch: Added watch file + * debian/post{inst,rm}: Call build-help.pl to update package.html list + + -- Dirk Eddelbuettel Thu, 7 Oct 2004 21:58:45 -0500 + +survival (2.13.1-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Thu, 5 Aug 2004 21:11:03 -0500 + +survival (2.13-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Mon, 2 Aug 2004 17:30:28 -0500 + +survival (2.11.5-1) unstable; urgency=low + + * New upstream release + + -- Dirk Eddelbuettel Wed, 2 Jun 2004 20:10:39 -0500 + +survival (2.11.4-1) unstable; urgency=low + + * New upstream release for the upcoming R 1.9.0 release + * Built with 1.9.0 cvs dated 2004.02.29 (in package r-base_1.8.1.cvs.20040229) + + -- Dirk Eddelbuettel Thu, 4 Mar 2004 19:49:31 -0600 + +survival (2.11-2) unstable; urgency=low + + * debian/control: Replaces r-recommended (<< 1.9.0), not just <= 1.8.1-1 + + -- Dirk Eddelbuettel Sun, 1 Feb 2004 17:23:23 -0600 + +survival (2.11-1) unstable; urgency=low + + * Initial Debian Release as a standalone package rather than as part of + the r-recommended package built from the maine r-base source package. + + -- Dirk Eddelbuettel Tue, 27 Jan 2004 20:59:42 -0600 + + --- survival-2.41-3.orig/debian/compat +++ survival-2.41-3/debian/compat @@ -0,0 +1 @@ +7 --- survival-2.41-3.orig/debian/control +++ survival-2.41-3/debian/control @@ -0,0 +1,20 @@ +Source: survival +Section: gnu-r +Priority: optional +Maintainer: Dirk Eddelbuettel +Build-Depends: debhelper (>= 7.0.0), r-base-dev (>= 3.3.3), cdbs, r-cran-matrix +Standards-Version: 3.9.8 + +Package: r-cran-survival +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, ${R:Depends}, r-cran-matrix +Replaces: r-recommended (<< 1.9.0) +Description: GNU R package for survival analysis + This package provides functions and datasets for survival analysis: + descriptive statistics, two-sample tests, parametric accelerated failure + models, Cox model. Delayed entry (truncation) is allowed for all models; + interval censoring for parametric models. + . + This package is part of the set of packages that are 'recommended' + by R Core and shipped with upstream source releases of R itself. + --- survival-2.41-3.orig/debian/copyright +++ survival-2.41-3/debian/copyright @@ -0,0 +1,36 @@ +This is the Debian GNU/Linux r-cran-survival package of survival, a +collection of functions and datasets for survival analysis. Survival +was written by Terry Therneau, and ported to by Thomas Lumley. + +This package was created by Dirk Eddelbuettel . +The sources were downloaded from + http://cran.us.r-project.org/src/contrib/ +and are also included in the (large) source tar archive of R itself at + http://cran.us.r-project.org/src/base/ + +The package was renamed from its upstream name 'survival' to 'r-cran-survival' +to fit the pattern of CRAN (and non-CRAN) packages for R. + +Copyright (C) 1998-2008 Terry Therneau and Thomas Lumley + +License: GPL-2 + +On a Debian GNU/Linux system, the GPL-2 license is included in the file +/usr/share/common-licenses/GPL-2. + +For reference, the upstream DESCRIPTION [with lines broken to 80 cols] +file is included below: + + Title: Survival analysis, including penalised likelihood. + Maintainer: Thomas Lumley + Priority: recommended + Package: survival + Version: 2.11 + Depends: R (>= 1.7.0) + Author: S original by Terry Therneau, ported by Thomas Lumley + Description: survival analysis: descriptive statistics, two-sample + tests, parametric accelerated failure models, Cox model. Delayed entry + (truncation) allowed for all models; interval censoring for parametric + models. + License: GPL2 + Packaged: Sat Dec 27 11:41:51 2003; thomas --- survival-2.41-3.orig/debian/overrides +++ survival-2.41-3/debian/overrides @@ -0,0 +1,3 @@ +r-cran-survival: executable-not-elf-or-script usr/lib/R/library/survival/COPYRIGHTS +r-cran-survival: executable-not-elf-or-script usr/lib/R/library/survival/CITATION +r-cran-survival: executable-not-elf-or-script usr/lib/R/library/survival/NEWS.Rd --- survival-2.41-3.orig/debian/rules +++ survival-2.41-3/debian/rules @@ -0,0 +1,11 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# debian/rules file for the Debian/GNU Linux r-cran-survival package +# Copyright 2004-2006 by Dirk Eddelbuettel + +include /usr/share/R/debian/r-cran.mk + +## override the default as this is an r-recommended package +debRlib := $(CURDIR)/debian/$(package)/usr/lib/R/library + + --- survival-2.41-3.orig/debian/watch +++ survival-2.41-3/debian/watch @@ -0,0 +1,2 @@ +version=3 +http://cran.r-project.org/src/contrib/survival_([-\d\.]*)\.tar.gz