Roary-3.8.0/000077500000000000000000000000001304207556500126255ustar00rootroot00000000000000Roary-3.8.0/.gitignore000066400000000000000000000011541304207556500146160ustar00rootroot00000000000000.DS_Store blib/ .build/ _build/ cover_db/ inc/ Build !Build/ Build.bat .last_cover_stats Makefile Makefile.old MANIFEST.bak META.yml MYMETA.yml nytprof.out pm_to_blib _clustered _clustered.bak.clstr example_1.faa.tmp.filtered.fa example_2.faa.tmp.filtered.fa pan_genome.fa query_1.fa.tmp.filtered.fa query_2.fa.tmp.filtered.fa query_3.fa.tmp.filtered.fa accessory.header.embl blast_identity_frequency.Rtab core_accessory.header.embl reannotated_groups_file set_difference_common_set_reannotated set_difference_unique_set_one_reannotated set_difference_unique_set_two_reannotated extras/ bin/shred_assemblies Bio-Roary-* Roary-3.8.0/.travis.yml000066400000000000000000000007671304207556500147500ustar00rootroot00000000000000language: perl sudo: false addons: apt: packages: - libssl-dev - mafft cache: directories: - build/parallel-20160722 - build/parallel-20130922 - build/bedtools2 - build/cd-hit-v4.6.6-2016-0711 - build/prank-msa-master - build/ncbi-blast-2.4.0+ - build/mcl-14-137 - build/fasttree perl: - "5.14" - "5.20" - "5.24" env: - PARALLEL_VERSION=20160722 - PARALLEL_VERSION=20130922 install: - "source ./install_dependencies.sh" script: "ROARY_FULL_TESTS=1 dzil test" Roary-3.8.0/AUTHORS000066400000000000000000000001101304207556500136650ustar00rootroot00000000000000Andrew J. Page (ap13@sanger.ac.uk) Carla A. Cummins (cc21@sanger.ac.uk) Roary-3.8.0/Dockerfile000066400000000000000000000003111304207556500146120ustar00rootroot00000000000000# # From this base-image / starting-point # FROM debian:testing # # Authorship # MAINTAINER ap13@sanger.ac.uk # # Pull in packages from testing # RUN apt-get update -qq && apt-get install -y roary Roary-3.8.0/GPL-LICENSE000066400000000000000000001047641304207556500142660ustar00rootroot00000000000000This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. This is free software, licensed under: The GNU General Public License, Version 3, June 2007 GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The GNU General Public License is a free, copyleft license for software and other kinds of works. 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Roary-3.8.0/README.md000066400000000000000000000132241304207556500141060ustar00rootroot00000000000000#Roary the pan genome pipeline For instructions on how to use the software, the input format and output formats, please see [the Roary website](http://sanger-pathogens.github.io/Roary). [![Build Status](https://travis-ci.org/sanger-pathogens/Roary.svg?branch=master)](https://travis-ci.org/sanger-pathogens/Roary) Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. ##Citation "Roary: Rapid large-scale prokaryote pan genome analysis", Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill, Bioinformatics, (2015). doi: http://dx.doi.org/10.1093/bioinformatics/btv421 [Roary: Rapid large-scale prokaryote pan genome analysis](http://dx.doi.org/10.1093/bioinformatics/btv421) # Installation Theres are a number of dependancies required for Roary, with instructions specific to the type of system you have: * Ubuntu/Debian * CentOS/RedHat * Homebrew/Linuxbrew - OSX/Linux * Guix - Linux * Virtual Machine - OSX/Linux/Windows * Docker - OSX/Linux/Windows/Cloud * Installing from source - OSX/Linux If the installation fails please contact your system administrator. If you encounter a bug please let us know by emailing roary@sanger.ac.uk . ##Ubuntu/Debian ###Debian Testing ``` sudo apt-get install roary ``` ###Ubuntu 14.04/16.04 All the dependancies can be installed using apt and cpanm. Root permissions are required. Ubuntu 16.04 contains a package for Roary but it is frozen at v3.6.0. ``` sudo apt-get install bedtools cd-hit ncbi-blast+ mcl parallel cpanminus prank mafft fasttree sudo cpanm -f Bio::Roary ``` ###Ubuntu 12.04 Some of the software versions in apt are quite old so follow the instructions for [LinuxBrew](http://brew.sh/linuxbrew/) below. ##CentOS/RedHat To install the dependancies, the easiest way is to install [LinuxBrew](http://brew.sh/linuxbrew/) using the steps for Fedora, then follow the steps below for installing Roary on LinuxBrew. ##Homebrew/Linuxbrew - OSX/Linux Assuming you have [homebrew](http://brew.sh/) (OSX) or [linuxbrew](http://brew.sh/linuxbrew/) (Linux) setup and installed on your system: ``` brew tap homebrew/science brew install bedtools cd-hit blast mcl parallel prank mafft fasttree cpanm sudo cpanm -f Bio::Roary ``` ##GNU Guix Roary is not included in version in [Guix](https://www.gnu.org/software/guix) 0.11.0 so `guix pull` is currently required before installation. ``` guix pull guix package --install roary ``` ##Virtual Machine - OSX/Linux/Windows Roary wont run natively on Windows but we have created virtual machine which has all of the software setup, including Prokka, along with the test datasets from the paper. It is based on [Bio-Linux 8](http://environmentalomics.org/bio-linux/). You need to first install [VirtualBox](https://www.virtualbox.org/), then load the virtual machine, using the 'File -> Import Appliance' menu option. The root password is 'manager'. ftp://ftp.sanger.ac.uk/pub/pathogens/pathogens-vm/pathogens-vm.latest.ova More importantly though, if your trying to do bioinformatics on Windows, your not going to get very far and you should seriously consider upgrading to Linux. ##Docker - OSX/Linux/Windows/Cloud We have a docker container which gets automatically built from the latest version of Roary in Debian Med. To install it: ``` docker pull sangerpathogens/roary ``` To use it you would use a command such as this (substituting in your directories), where your GFF files are assumed to be stored in /home/ubuntu/data: ``` docker run --rm -it -v /home/ubuntu/data:/data sangerpathogens/roary roary -f /data /data/*.gff ``` ##Installing from source (advanced Linux users only) As a last resort you can install everything from source. This is for users with advanced Linux skills and we do not provide any support with this method since you have the skills to figure things out. Download the latest software from (https://github.com/sanger-pathogens/Roary/tarball/master). Choose somewhere to put it, for example in your home directory (no root access required): ``` cd $HOME tar zxvf sanger-pathogens-Roary-xxxxxx.tar.gz ls Roary-* ``` Add the following lines to your $HOME/.bashrc file, or to /etc/profile.d/roary.sh to make it available to all users: ``` export PATH=$PATH:$HOME/Roary-x.x.x/bin export PERL5LIB=$PERL5LIB:$HOME/Roary-x.x.x/lib ``` Install the perl dependancies: ``` sudo cpanm Array::Utils Bio::Perl Exception::Class File::Basename File::Copy File::Find::Rule File::Grep File::Path File::Slurper File::Spec File::Temp File::Which FindBin Getopt::Long Graph Graph::Writer::Dot List::Util Log::Log4perl Moose Moose::Role Text::CSV PerlIO::utf8_strict ``` Install the external dependances either from source or from your packaging system: ``` bedtools cd-hit blast mcl GNUparallel prank mafft fasttree ``` ## Ancient systems and versions of perl The code will not work with perl 5.8 or below (pre-modern perl). We no longer test against 5.10 (released 2007). If your running a very old verison of Linux, your also in trouble. #Versions of software we test against * Perl 5.14, 5.16, 5.20, 5.24 * cdhit 4.6.1 * ncbi blast+ 2.4.0 * mcl 14-137 * bedtools 2.26.0 * prank 130410 * GNU parallel 20130922, 20160722, 20150122 * FastTree 2.1.9 Roary-3.8.0/bin/000077500000000000000000000000001304207556500133755ustar00rootroot00000000000000Roary-3.8.0/bin/create_pan_genome000077500000000000000000000007721304207556500167640ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::CreatePanGenome; # ABSTRACT: Create a pan genome from a set of GFF files with WTSI defaults # PODNAME: create_pan_genome =head1 SYNOPSIS Create a pan genome from a set of GFF files with WTSI defaults =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::CreatePanGenome; Bio::Roary::CommandLine::CreatePanGenome->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/create_pan_genome_plots.R000077500000000000000000000054201304207556500204000ustar00rootroot00000000000000#!/usr/bin/env Rscript # ABSTRACT: Create R plots # PODNAME: create_plots.R # Take the output files from the pan genome pipeline and create nice plots. library(ggplot2) mydata = read.table("number_of_new_genes.Rtab") boxplot(mydata, data=mydata, main="Number of new genes", xlab="No. of genomes", ylab="No. of genes",varwidth=TRUE, ylim=c(0,max(mydata)), outline=FALSE) mydata = read.table("number_of_conserved_genes.Rtab") boxplot(mydata, data=mydata, main="Number of conserved genes", xlab="No. of genomes", ylab="No. of genes",varwidth=TRUE, ylim=c(0,max(mydata)), outline=FALSE) mydata = read.table("number_of_genes_in_pan_genome.Rtab") boxplot(mydata, data=mydata, main="No. of genes in the pan-genome", xlab="No. of genomes", ylab="No. of genes",varwidth=TRUE, ylim=c(0,max(mydata)), outline=FALSE) mydata = read.table("number_of_unique_genes.Rtab") boxplot(mydata, data=mydata, main="Number of unique genes", xlab="No. of genomes", ylab="No. of genes",varwidth=TRUE, ylim=c(0,max(mydata)), outline=FALSE) mydata = read.table("blast_identity_frequency.Rtab") plot(mydata,main="Number of blastp hits with different percentage identity", xlab="Blast percentage identity", ylab="No. blast results") library(ggplot2) conserved = colMeans(read.table("number_of_conserved_genes.Rtab")) total = colMeans(read.table("number_of_genes_in_pan_genome.Rtab")) genes = data.frame( genes_to_genomes = c(conserved,total), genomes = c(c(1:length(conserved)),c(1:length(conserved))), Key = c(rep("Conserved genes",length(conserved)), rep("Total genes",length(total))) ) ggplot(data = genes, aes(x = genomes, y = genes_to_genomes, group = Key, linetype=Key)) +geom_line()+ theme_classic() + ylim(c(1,max(total)))+ xlim(c(1,length(total)))+ xlab("No. of genomes") + ylab("No. of genes")+ theme_bw(base_size = 16) + theme(legend.justification=c(0,1),legend.position=c(0,1))+ ggsave(filename="conserved_vs_total_genes.png", scale=1) ###################### unique_genes = colMeans(read.table("number_of_unique_genes.Rtab")) new_genes = colMeans(read.table("number_of_new_genes.Rtab")) genes = data.frame( genes_to_genomes = c(unique_genes,new_genes), genomes = c(c(1:length(unique_genes)),c(1:length(unique_genes))), Key = c(rep("Unique genes",length(unique_genes)), rep("New genes",length(new_genes))) ) ggplot(data = genes, aes(x = genomes, y = genes_to_genomes, group = Key, linetype=Key)) +geom_line()+ theme_classic() + ylim(c(1,max(unique_genes)))+ xlim(c(1,length(unique_genes)))+ xlab("No. of genomes") + ylab("No. of genes")+ theme_bw(base_size = 16) + theme(legend.justification=c(1,1),legend.position=c(1,1))+ ggsave(filename="unique_vs_new_genes.png", scale=1) Roary-3.8.0/bin/extract_proteome_from_gff000077500000000000000000000007551304207556500205630ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::ExtractProteomeFromGFF; # ABSTRACT: Take in GFF files and output the proteome # PODNAME: extract_proteome_from_gff =head1 SYNOPSIS Take in GFF files and output the proteome =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::ExtractProteomeFromGff; Bio::Roary::CommandLine::ExtractProteomeFromGff->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/iterative_cdhit000077500000000000000000000006441304207556500164760ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::IterativeCdhit; # ABSTRACT: Iteratively run cdhit # PODNAME: iterative_cdhit =head1 SYNOPSIS Iteratively run cdhit =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::IterativeCdhit; Bio::Roary::CommandLine::IterativeCdhit->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/pan_genome_assembly_statistics000077500000000000000000000010501304207556500216000ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::AssemblyStatistics; # ABSTRACT: Given a spreadsheet of gene presence and absence calculate some statistics # PODNAME: pan_genome_assembly_statistics =head1 SYNOPSIS Given a spreadsheet of gene presence and absence calculate some statistics =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::AssemblyStatistics; Bio::Roary::CommandLine::AssemblyStatistics->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/pan_genome_core_alignment000077500000000000000000000011661304207556500205050ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::RoaryCoreAlignment; # ABSTRACT: Take in the group statistics spreadsheet and the location of the gene multifasta files and create a core alignment. # PODNAME: pan_genome_core_alignment =head1 SYNOPSIS Take in the group statistics spreadsheet and the location of the gene multifasta files and create a core alignment. =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::RoaryCoreAlignment; Bio::Roary::CommandLine::RoaryCoreAlignment->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/pan_genome_post_analysis000077500000000000000000000007411304207556500204050ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::RoaryPostAnalysis; # ABSTRACT: Perform the post analysis on the pan genome # PODNAME: pan_genome_post_analysis =head1 SYNOPSIS Perform the post analysis on the pan genome =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::RoaryPostAnalysis; Bio::Roary::CommandLine::RoaryPostAnalysis->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/pan_genome_reorder_spreadsheet000077500000000000000000000010511304207556500215410ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::RoaryReorderSpreadsheet; # ABSTRACT: Take in a tree and a spreadsheet and output a reordered spreadsheet # PODNAME: pan_genome_reorder_spreadsheet =head1 SYNOPSIS Take in a tree and a spreadsheet and output a reordered spreadsheet =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::RoaryReorderSpreadsheet; Bio::Roary::CommandLine::RoaryReorderSpreadsheet->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/parallel_all_against_all_blastp000077500000000000000000000010421304207556500216470ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::ParallelAllAgainstAllBlastp; # ABSTRACT: Take in a FASTA file of proteins and blast against itself # PODNAME: parallel_all_against_all_blastp =head1 SYNOPSIS Take in a FASTA file of proteins and blast against itself =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp; Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/protein_alignment_from_nucleotides000077500000000000000000000011261304207556500224620ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::GeneAlignmentFromNucleotides; # ABSTRACT: Take in multi-FASTA files of nucleotides and align each file with PRANK or MAFFT # PODNAME: protein_alignment_from_nucleotides =head1 SYNOPSIS Take in multi-FASTA files of nucleotides and align each file with PRANK or MAFFT =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::GeneAlignmentFromNucleotides; Bio::Roary::CommandLine::GeneAlignmentFromNucleotides->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/query_pan_genome000077500000000000000000000010021304207556500166510ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::QueryRoary; # ABSTRACT: Take in a groups file and the protein fasta files and output selected data # PODNAME: query_pan_genome =head1 SYNOPSIS Take in a groups file and the protein fasta files and output selected data =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::QueryRoary; Bio::Roary::CommandLine::QueryRoary->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/roary000077500000000000000000000006521304207556500144620ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::Roary; # ABSTRACT: Create a pan genome from a set of GFF files # PODNAME: roary =head1 SYNOPSIS Create a pan genome from a set of GFF files =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::Roary; Bio::Roary::CommandLine::Roary->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/roary-create_pan_genome_plots.R000077500000000000000000000054201304207556500215320ustar00rootroot00000000000000#!/usr/bin/env Rscript # ABSTRACT: Create R plots # PODNAME: create_plots.R # Take the output files from the pan genome pipeline and create nice plots. library(ggplot2) mydata = read.table("number_of_new_genes.Rtab") boxplot(mydata, data=mydata, main="Number of new genes", xlab="No. of genomes", ylab="No. of genes",varwidth=TRUE, ylim=c(0,max(mydata)), outline=FALSE) mydata = read.table("number_of_conserved_genes.Rtab") boxplot(mydata, data=mydata, main="Number of conserved genes", xlab="No. of genomes", ylab="No. of genes",varwidth=TRUE, ylim=c(0,max(mydata)), outline=FALSE) mydata = read.table("number_of_genes_in_pan_genome.Rtab") boxplot(mydata, data=mydata, main="No. of genes in the pan-genome", xlab="No. of genomes", ylab="No. of genes",varwidth=TRUE, ylim=c(0,max(mydata)), outline=FALSE) mydata = read.table("number_of_unique_genes.Rtab") boxplot(mydata, data=mydata, main="Number of unique genes", xlab="No. of genomes", ylab="No. of genes",varwidth=TRUE, ylim=c(0,max(mydata)), outline=FALSE) mydata = read.table("blast_identity_frequency.Rtab") plot(mydata,main="Number of blastp hits with different percentage identity", xlab="Blast percentage identity", ylab="No. blast results") library(ggplot2) conserved = colMeans(read.table("number_of_conserved_genes.Rtab")) total = colMeans(read.table("number_of_genes_in_pan_genome.Rtab")) genes = data.frame( genes_to_genomes = c(conserved,total), genomes = c(c(1:length(conserved)),c(1:length(conserved))), Key = c(rep("Conserved genes",length(conserved)), rep("Total genes",length(total))) ) ggplot(data = genes, aes(x = genomes, y = genes_to_genomes, group = Key, linetype=Key)) +geom_line()+ theme_classic() + ylim(c(1,max(total)))+ xlim(c(1,length(total)))+ xlab("No. of genomes") + ylab("No. of genes")+ theme_bw(base_size = 16) + theme(legend.justification=c(0,1),legend.position=c(0,1))+ ggsave(filename="conserved_vs_total_genes.png", scale=1) ###################### unique_genes = colMeans(read.table("number_of_unique_genes.Rtab")) new_genes = colMeans(read.table("number_of_new_genes.Rtab")) genes = data.frame( genes_to_genomes = c(unique_genes,new_genes), genomes = c(c(1:length(unique_genes)),c(1:length(unique_genes))), Key = c(rep("Unique genes",length(unique_genes)), rep("New genes",length(new_genes))) ) ggplot(data = genes, aes(x = genomes, y = genes_to_genomes, group = Key, linetype=Key)) +geom_line()+ theme_classic() + ylim(c(1,max(unique_genes)))+ xlim(c(1,length(unique_genes)))+ xlab("No. of genomes") + ylab("No. of genes")+ theme_bw(base_size = 16) + theme(legend.justification=c(1,1),legend.position=c(1,1))+ ggsave(filename="unique_vs_new_genes.png", scale=1) Roary-3.8.0/bin/roary-pan_genome_reorder_spreadsheet000077500000000000000000000010511304207556500226730ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::RoaryReorderSpreadsheet; # ABSTRACT: Take in a tree and a spreadsheet and output a reordered spreadsheet # PODNAME: pan_genome_reorder_spreadsheet =head1 SYNOPSIS Take in a tree and a spreadsheet and output a reordered spreadsheet =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::RoaryReorderSpreadsheet; Bio::Roary::CommandLine::RoaryReorderSpreadsheet->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/roary-query_pan_genome000077500000000000000000000010021304207556500200030ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::QueryRoary; # ABSTRACT: Take in a groups file and the protein fasta files and output selected data # PODNAME: query_pan_genome =head1 SYNOPSIS Take in a groups file and the protein fasta files and output selected data =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::QueryRoary; Bio::Roary::CommandLine::QueryRoary->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/bin/transfer_annotation_to_groups000077500000000000000000000011171304207556500215020ustar00rootroot00000000000000#!/usr/bin/env perl package Bio::Roary::Main::TransferAnnotationToGroups; # ABSTRACT: Take in a groups file and a set of GFF files and transfer the consensus annotation # PODNAME: transfer_annotation_to_groups =head1 SYNOPSIS Take in a groups file and a set of GFF files and transfer the consensus annotation =cut use Cwd qw(abs_path); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } use Bio::Roary::CommandLine::TransferAnnotationToGroups; Bio::Roary::CommandLine::TransferAnnotationToGroups->new(args => \@ARGV, script_name => $0)->run; Roary-3.8.0/deployment_process000066400000000000000000000003011304207556500164600ustar00rootroot00000000000000# Releasing a new version Update the version number in dist.ini Commit all changes. Tag with the current version. Push all changes, and on github.com submit,accepted pull request dzil release Roary-3.8.0/dist.ini000066400000000000000000000015551304207556500142770ustar00rootroot00000000000000name = Bio-Roary version = 3.8.0 author = Andrew J. Page license = GPL_3 copyright_holder = Wellcome Trust Sanger Institute copyright_year = 2013 main_module = lib/Bio/Roary.pm [MetaResources] homepage = http://www.sanger.ac.uk/ repository.web = http://sanger-pathogens.github.io/Roary/ repository.url = https://github.com/sanger-pathogens/Roary.git repository.type = git [@Basic] [PruneCruft] [ExtraTests] [AutoPrereqs] [FileFinder::ByName / BinNotR] dir = bin skip = .*\.R$ [PodWeaver] finder = :InstallModules finder = BinNotR [PkgVersion] [Prereqs] PerlIO::utf8_strict = 0 [Encoding] filename = t/data/kraken_test/database.idx filename = t/data/kraken_test/database.jdb filename = t/data/kraken_test/database.kdb filename = t/data/kraken_test/taxonomy/names.dmp filename = t/data/kraken_test/taxonomy/nodes.dmp encoding = bytes Roary-3.8.0/install_dependencies.sh000077500000000000000000000156621304207556500173520ustar00rootroot00000000000000#!/bin/bash set -x set -eu start_dir=$(pwd) ROARY_LIB_DIR="${start_dir}/lib" ROARY_BIN_DIR="${start_dir}/bin" PARALLEL_VERSION=${PARALLEL_VERSION:-"20160722"} PARALLEL_DOWNLOAD_FILENAME="parallel-${PARALLEL_VERSION}.tar.bz2" PARALLEL_URL="http://ftp.gnu.org/gnu/parallel/${PARALLEL_DOWNLOAD_FILENAME}" BEDTOOLS_VERSION="2.26.0" BEDTOOLS_DOWNLOAD_FILENAME="bedtools-${BEDTOOLS_VERSION}.tar.gz" BEDTOOLS_URL="https://github.com/arq5x/bedtools2/releases/download/v${BEDTOOLS_VERSION}/${BEDTOOLS_DOWNLOAD_FILENAME}" CDHIT_SHORT_VERSION="4.6.6" CDHIT_LONG_VERSION="4.6.6-2016-0711" CDHIT_DOWNLOAD_FILENAME="cd-hit-${CDHIT_SHORT_VERSION}.tar.gz" CDHIT_URL="https://github.com/weizhongli/cdhit/releases/download/V${CDHIT_SHORT_VERSION}/cd-hit-v${CDHIT_LONG_VERSION}.tar.gz" PRANK_VERSION="0.140603" PRANK_DOWNLOAD_FILENAME="prank-msa-master.tar.gz" PRANK_URL="https://github.com/ariloytynoja/prank-msa/archive/master.tar.gz" BLAST_VERSION="2.4.0" BLAST_DOWNLOAD_FILENAME="ncbi-blast-${BLAST_VERSION}+-x64-linux.tar.gz" BLAST_URL="ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${BLAST_VERSION}/${BLAST_DOWNLOAD_FILENAME}" MCL_VERSION="14-137" MCL_DOWNLOAD_FILENAME="mcl-${MCL_VERSION}.tar.gz" MCL_URL="http://micans.org/mcl/src/mcl-${MCL_VERSION}.tar.gz" FASTTREE_VERSION="2.1.9" FASTTREE_DOWNLOAD_FILENAME="FastTree-${FASTTREE_VERSION}.c" FASTTREE_URL="http://microbesonline.org/fasttree/FastTree-${FASTTREE_VERSION}.c" MAFFT_VERSION="7.271" MAFFT_DOWNLOAD_FILENAME="mafft-${MAFFT_VERSION}-without-extensions-src.tgz" MAFFT_URL="http://mafft.cbrc.jp/alignment/software/${MAFFT_DOWNLOAD_FILENAME}" # Make an install location if [ ! -d 'build' ]; then mkdir build fi cd build build_dir=$(pwd) PARALLEL_DOWNLOAD_PATH="$(pwd)/${PARALLEL_DOWNLOAD_FILENAME}" BEDTOOLS_DOWNLOAD_PATH="$(pwd)/${BEDTOOLS_DOWNLOAD_FILENAME}" CDHIT_DOWNLOAD_PATH="$(pwd)/${CDHIT_DOWNLOAD_FILENAME}" PRANK_DOWNLOAD_PATH="$(pwd)/${PRANK_DOWNLOAD_FILENAME}" BLAST_DOWNLOAD_PATH="$(pwd)/${BLAST_DOWNLOAD_FILENAME}" MCL_DOWNLOAD_PATH="$(pwd)/${MCL_DOWNLOAD_FILENAME}" FASTTREE_DOWNLOAD_PATH="$(pwd)/${FASTTREE_DOWNLOAD_FILENAME}" MAFFT_DOWNLOAD_PATH="$(pwd)/${MAFFT_DOWNLOAD_FILENAME}" PARALLEL_BUILD_DIR="$(pwd)/parallel-${PARALLEL_VERSION}" BEDTOOLS_BUILD_DIR="$(pwd)/bedtools2" CDHIT_BUILD_DIR="$(pwd)/cd-hit-v${CDHIT_LONG_VERSION}" PRANK_BUILD_DIR="$(pwd)/prank-msa-master" BLAST_BUILD_DIR="$(pwd)/ncbi-blast-${BLAST_VERSION}+" MCL_BUILD_DIR="$(pwd)/mcl-${MCL_VERSION}" FASTTREE_BUILD_DIR="$(pwd)/fasttree" MAFFT_BUILD_DIR="$(pwd)/mafft-${MAFFT_VERSION}-without-extensions" download () { download_url=$1 download_path=$2 cd $build_dir if [ -e "$download_path" ]; then echo "Skipping download of $download_url, $download_path already exists" else echo "Downloading $download_url to $download_path" wget $download_url -O $download_path pwd fi } untar () { to_untar=$1 expected_directory=$2 if [ -d "$expected_directory" ]; then rm -rf $expected_directory fi echo "Untarring $to_untar to $expected_directory" cd $build_dir tar xzvf $to_untar rm $to_untar pwd } if [ -e "$BLAST_BUILD_DIR/bin/blastp" ]; then echo "blast already untarred to $BLAST_BUILD_DIR, skipping" else download $BLAST_URL $BLAST_DOWNLOAD_PATH untar $BLAST_DOWNLOAD_PATH $BLAST_BUILD_DIR fi # Build parallel if [ -e "$PARALLEL_BUILD_DIR/src/parallel" ]; then echo "Parallel already built, skipping" else download $PARALLEL_URL $PARALLEL_DOWNLOAD_PATH echo "Untarring parallel to $PARALLEL_BUILD_DIR" tar xjvf $PARALLEL_DOWNLOAD_PATH echo "Building parallel" cd $PARALLEL_BUILD_DIR ./configure make fi # Build bedtools if [ -e "$BEDTOOLS_BUILD_DIR/bin/bedtools" ]; then echo "Bedtools already built, skipping" else download $BEDTOOLS_URL $BEDTOOLS_DOWNLOAD_PATH untar $BEDTOOLS_DOWNLOAD_PATH $BEDTOOLS_BUILD_DIR cd $BEDTOOLS_BUILD_DIR echo "Building bedtools" ls -alrt make fi # Build cd-hit if [ -e "$CDHIT_BUILD_DIR/cd-hit" ]; then echo "cd-hit already built, skipping" else download $CDHIT_URL $CDHIT_DOWNLOAD_PATH untar $CDHIT_DOWNLOAD_PATH $CDHIT_BUILD_DIR echo "Building cd-hit" cd $CDHIT_BUILD_DIR make fi # Build prank if [ -e "$PRANK_BUILD_DIR/src/prank" ]; then echo "prank already built, skipping" else download $PRANK_URL $PRANK_DOWNLOAD_PATH untar $PRANK_DOWNLOAD_PATH $PRANK_BUILD_DIR echo "Building prank" cd $PRANK_BUILD_DIR cd src make fi # Build MCL if [ -e "$MCL_BUILD_DIR/src/shmcl/mcl" ]; then echo "MCL already built, skipping" else download $MCL_URL $MCL_DOWNLOAD_PATH untar $MCL_DOWNLOAD_PATH $MCL_BUILD_DIR echo "Building MCL" cd $MCL_BUILD_DIR ./configure make fi # Build FastTree if [ -e "$FASTTREE_BUILD_DIR/FastTree" ]; then echo "FastTree already built, skipping" else download $FASTTREE_URL $FASTTREE_DOWNLOAD_PATH mkdir -p $FASTTREE_BUILD_DIR mv $FASTTREE_DOWNLOAD_FILENAME $FASTTREE_BUILD_DIR cd $FASTTREE_BUILD_DIR echo "Building FastTree" gcc -o FastTree FastTree-${FASTTREE_VERSION}.c -lm fi export MAFFT_INSTALL_DIR="${MAFFT_BUILD_DIR}/build" # Build MAFFT if [ -e "$MAFFT_BUILD_DIR/build/mafft" ]; then echo "MAFFT already built, skipping" else download $MAFFT_URL $MAFFT_DOWNLOAD_PATH untar $MAFFT_DOWNLOAD_PATH $MAFFT_BUILD_DIR echo "Building MAFFT" cd $MAFFT_BUILD_DIR mkdir -p $MAFFT_INSTALL_DIR cd core sed -i '1s!.*!PREFIX = $(MAFFT_INSTALL_DIR)!' Makefile make make install fi # Add things to PATH update_path () { new_dir=$1 if [[ ! "$PATH" =~ (^|:)"${new_dir}"(:|$) ]]; then echo "export PATH=${new_dir}:${PATH}" export PATH=${new_dir}:${PATH} fi } export PATH PARALLEL_BIN_DIR="$PARALLEL_BUILD_DIR/src" update_path $PARALLEL_BIN_DIR BEDTOOLS_BIN_DIR="$BEDTOOLS_BUILD_DIR/bin" update_path $BEDTOOLS_BIN_DIR CDHIT_BIN_DIR="$CDHIT_BUILD_DIR" update_path $CDHIT_BIN_DIR PRANK_BIN_DIR="$PRANK_BUILD_DIR/src" update_path $PRANK_BIN_DIR BLAST_BIN_DIR="$BLAST_BUILD_DIR/bin" update_path $BLAST_BIN_DIR MCL_BIN_DIR="$MCL_BUILD_DIR/src/shmcl" update_path $MCL_BIN_DIR MCL_BIN_DIR_2="$MCL_BUILD_DIR/src/alien/oxygen/src" update_path $MCL_BIN_DIR_2 FASTTREE_BIN_DIR=$FASTTREE_BUILD_DIR update_path $FASTTREE_BIN_DIR MAFFT_BIN_DIR="$MAFFT_INSTALL_DIR/bin" update_path $MAFFT_BIN_DIR update_perl_path () { new_dir=$1 PERL5LIB=${PERL5LIB-$new_dir} if [[ ! "$PERL5LIB" =~ (^|:)"${new_dir}"(:|$) ]]; then echo "export PERL5LIB=${new_dir}:${PERL5LIB}" export PERL5LIB=${new_dir}:${PERL5LIB} fi } BEDTOOLS_LIB_DIR="$BEDTOOLS_BUILD_DIR/lib" update_perl_path $BEDTOOLS_LIB_DIR cd $start_dir cpanm --notest Dist::Zilla dzil authordeps --missing | cpanm --notest dzil listdeps --missing | cpanm --notest cd $start_dir echo "Add the following lines to one of these files ~/.bashrc or ~/.bash_profile or ~/.profile" echo "export PATH=${ROARY_BIN_DIR}:${PARALLEL_BIN_DIR}:${BEDTOOLS_BIN_DIR}:${CDHIT_BIN_DIR}:${PRANK_BIN_DIR}:${BLAST_BIN_DIR}:${MCL_BIN_DIR}:${MCL_BIN_DIR_2}:${FASTTREE_BIN_DIR}:${MAFFT_BIN_DIR}:${PATH}" echo "export PERL5LIB=${ROARY_LIB_DIR}:${BEDTOOLS_LIB_DIR}:${PERL5LIB}" set +eu set +x Roary-3.8.0/lib/000077500000000000000000000000001304207556500133735ustar00rootroot00000000000000Roary-3.8.0/lib/Bio/000077500000000000000000000000001304207556500141045ustar00rootroot00000000000000Roary-3.8.0/lib/Bio/Roary.pm000066400000000000000000000147541304207556500155510ustar00rootroot00000000000000package Bio::Roary; # ABSTRACT: Create a pan genome =head1 SYNOPSIS Create a pan genome =cut use Moose; use File::Copy; use Bio::Perl; use Bio::Roary::ParallelAllAgainstAllBlast; use Bio::Roary::CombinedProteome; use Bio::Roary::External::Cdhit; use Bio::Roary::External::Mcl; use Bio::Roary::InflateClusters; use Bio::Roary::AnalyseGroups; use Bio::Roary::GroupLabels; use Bio::Roary::AnnotateGroups; use Bio::Roary::GroupStatistics; use Bio::Roary::Output::GroupsMultifastasNucleotide; use Bio::Roary::External::PostAnalysis; use Bio::Roary::FilterFullClusters; use Bio::Roary::External::IterativeCdhit; use Bio::Roary::Output::BlastIdentityFrequency; has 'fasta_files' => ( is => 'rw', isa => 'ArrayRef', required => 1 ); has 'input_files' => ( is => 'rw', isa => 'ArrayRef', required => 1 ); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'clustered_proteins' ); has 'output_pan_geneome_filename' => ( is => 'rw', isa => 'Str', default => 'pan_genome.fa' ); has 'output_statistics_filename' => ( is => 'rw', isa => 'Str', default => 'gene_presence_absence.csv' ); has 'job_runner' => ( is => 'rw', isa => 'Str', default => 'Local' ); has 'cpus' => ( is => 'ro', isa => 'Int', default => 1 ); has 'makeblastdb_exec' => ( is => 'rw', isa => 'Str', default => 'makeblastdb' ); has 'blastp_exec' => ( is => 'rw', isa => 'Str', default => 'blastp' ); has 'mcxdeblast_exec' => ( is => 'ro', isa => 'Str', default => 'mcxdeblast' ); has 'mcl_exec' => ( is => 'ro', isa => 'Str', default => 'mcl' ); has 'perc_identity' => ( is => 'ro', isa => 'Num', default => 98 ); has 'dont_delete_files' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'dont_create_rplots' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'dont_split_groups' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'verbose_stats' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); has 'group_limit' => ( is => 'rw', isa => 'Num', default => 50000 ); has 'core_definition' => ( is => 'rw', isa => 'Num', default => 1.0 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'mafft' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'output_multifasta_files' => ( is => 'ro', isa => 'Bool', default => 0 ); sub run { my ($self) = @_; my $output_combined_filename = '_combined_files'; my $output_cd_hit_filename = '_clustered'; my $output_blast_results_filename = '_blast_results'; my $output_mcl_filename = '_uninflated_mcl_groups'; my $output_filtered_clustered_fasta = '_clustered_filtered.fa'; my $cdhit_groups = $output_combined_filename.'.groups'; unlink($cdhit_groups) unless($self->dont_delete_files == 1); print "Combine proteins into a single file\n" if($self->verbose); my $combine_fasta_files = Bio::Roary::CombinedProteome->new( proteome_files => $self->fasta_files, output_filename => $output_combined_filename, ); $combine_fasta_files->create_combined_proteome_file; my $number_of_input_files = @{$self->input_files}; print "Iteratively run cd-hit\n" if($self->verbose); my $iterative_cdhit= Bio::Roary::External::IterativeCdhit->new( output_cd_hit_filename => $output_cd_hit_filename, output_combined_filename => $output_combined_filename, number_of_input_files => $number_of_input_files, output_filtered_clustered_fasta => $output_filtered_clustered_fasta, job_runner => $self->job_runner, cpus => $self->cpus ); $iterative_cdhit->run(); print "Parallel all against all blast\n" if($self->verbose); my $blast_obj = Bio::Roary::ParallelAllAgainstAllBlast->new( fasta_file => $output_cd_hit_filename, blast_results_file_name => $output_blast_results_filename, job_runner => $self->job_runner, cpus => $self->cpus, makeblastdb_exec => $self->makeblastdb_exec, blastp_exec => $self->blastp_exec, perc_identity => $self->perc_identity ); $blast_obj->run(); my $blast_identity_frequency_obj = Bio::Roary::Output::BlastIdentityFrequency->new( input_filename => $output_blast_results_filename, ); $blast_identity_frequency_obj->create_file(); print "Cluster with MCL\n" if($self->verbose); my $mcl = Bio::Roary::External::Mcl->new( blast_results => $output_blast_results_filename, mcxdeblast_exec => $self->mcxdeblast_exec, mcl_exec => $self->mcl_exec, job_runner => $self->job_runner, cpus => $self->cpus, output_file => $output_mcl_filename ); $mcl->run(); unlink($output_blast_results_filename) unless($self->dont_delete_files == 1); my $post_analysis = Bio::Roary::External::PostAnalysis->new( job_runner => 'Local', cpus => $self->cpus, fasta_files => $self->fasta_files, input_files => $self->input_files, output_filename => $self->output_filename, output_pan_geneome_filename => $self->output_pan_geneome_filename, output_statistics_filename => $self->output_statistics_filename, clusters_filename => $output_cd_hit_filename.'.clstr', dont_wait => 1, output_multifasta_files => $self->output_multifasta_files, dont_delete_files => $self->dont_delete_files, dont_create_rplots => $self->dont_create_rplots, dont_split_groups => $self->dont_split_groups, verbose_stats => $self->verbose_stats, translation_table => $self->translation_table, group_limit => $self->group_limit, core_definition => $self->core_definition, verbose => $self->verbose, mafft => $self->mafft, ); $post_analysis->run(); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/000077500000000000000000000000001304207556500152005ustar00rootroot00000000000000Roary-3.8.0/lib/Bio/Roary/AccessoryBinaryFasta.pm000066400000000000000000000076241304207556500216260ustar00rootroot00000000000000package Bio::Roary::AccessoryBinaryFasta; # ABSTRACT: Output a FASTA file which represents the binary presence and absence of genes in the accessory genome =head1 SYNOPSIS Output a FASTA file which represents the binary presence and absence of genes in the accessory genome use Bio::Roary::AccessoryBinaryFasta; my $obj = Bio::Roary::AccessoryBinaryFasta->new(input_files => ['abc','efg'], groups_to_files => {'group_1' => ['abc'], group_2 => ['abc', 'efg']} ); $obj->create_accessory_binary_fasta(); =cut use Moose; use POSIX; use Bio::Roary::AnnotateGroups; use Bio::Roary::AnalyseGroups; use Bio::Roary::Exceptions; use Bio::SeqIO; use File::Basename; has 'input_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'annotate_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnnotateGroups', required => 1 ); has 'analyse_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'accessory_binary_genes.fa' ); has 'lower_bound_percentage' => ( is => 'ro', isa => 'Int', default => 5 ); has 'upper_bound_percentage' => ( is => 'ro', isa => 'Int', default => 5 ); has 'max_accessory_to_include' => ( is => 'ro', isa => 'Int', default => 4000 ); has 'groups_to_files' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__groups_to_files' ); has '_lower_bound_value' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build__lower_bound_value' ); has '_upper_bound_value' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build__upper_bound_value' ); sub _build__groups_to_files { my ($self) = @_; my %groups_to_files; for my $group ( @{ $self->annotate_groups_obj->_groups } ) { my $genes = $self->annotate_groups_obj->_groups_to_id_names->{$group}; my %filenames; for my $gene_name ( @{$genes} ) { my $filename = $self->analyse_groups_obj->_genes_to_file->{$gene_name}; push( @{ $filenames{$filename} }, $gene_name ); } $groups_to_files{$group} = \%filenames; } return \%groups_to_files; } sub _build__lower_bound_value { my ($self) = @_; my $num_files = @{ $self->input_files }; return ceil( $num_files * ( $self->lower_bound_percentage / 100 ) ); } sub _build__upper_bound_value { my ($self) = @_; my $num_files = @{ $self->input_files }; return $num_files - ceil( $num_files * ( $self->upper_bound_percentage / 100 ) ); } sub create_accessory_binary_fasta { my ($self) = @_; my $out_seq_io = Bio::SeqIO->new( -file => ">" . $self->output_filename, -format => 'Fasta' ); for my $full_filename ( @{ $self->input_files } ) { my($filename, $dirs, $suffix) = fileparse($full_filename); my $output_sequence = ''; my $sample_name = $filename; $sample_name =~ s!\.gff\.proteome\.faa!!; my $gene_count = 0; for my $group ( sort keys %{ $self->groups_to_files } ) { last if($gene_count > $self->max_accessory_to_include); my @files = keys %{ $self->groups_to_files->{$group} }; next if ( @files <= $self->_lower_bound_value || @files > $self->_upper_bound_value ); my $group_to_file_genes = $self->groups_to_files->{$group}->{$full_filename}; if ( defined($group_to_file_genes) && @{$group_to_file_genes} > 0 ) { $output_sequence .= 'A'; } else { $output_sequence .= 'C'; } $gene_count++; } next if($output_sequence eq ''); $out_seq_io->write_seq( Bio::Seq->new( -display_id => $sample_name, -seq => $output_sequence ) ); } return 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/AccessoryClustering.pm000066400000000000000000000064421304207556500215370ustar00rootroot00000000000000package Bio::Roary::AccessoryClustering; # ABSTRACT: Take an a clusters file from CD-hit and the fasta file and output a fasta file without full clusters =head1 SYNOPSIS Take an a clusters file from CD-hit and the fasta file and output a fasta file without full clusters use Bio::Roary::AccessoryClustering; my $obj = Bio::Roary::AccessoryClustering->new( input_file => 'accessory_binary_genes.fa', identity => 0.96, cpus => 10, ); $obj->sample_weights(); =cut use Moose; use Bio::Roary::External::Cdhit; with 'Bio::Roary::ClustersRole'; has 'input_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'identity' => ( is => 'ro', isa => 'Num', default => 0.9 ); has 'cpus' => ( is => 'ro', isa => 'Int', default => 1 ); has '_output_cd_hit_filename' => ( is => 'ro', isa => 'Str', default => '_accessory_clusters' ); has 'clusters_to_samples' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_clusters_to_samples' ); has 'samples_to_clusters' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_samples_to_clusters' ); has 'sample_weights' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_sample_weights' ); has 'clusters_filename' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_clusters_filename' ); has 'clusters' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__clusters' ); sub _build_sample_weights { my ($self) = @_; my %sample_weights; for my $cluster_name ( keys %{ $self->clusters_to_samples } ) { my $cluster_size = @{ $self->clusters_to_samples->{$cluster_name} }; for my $sample_name ( @{ $self->clusters_to_samples->{$cluster_name} } ) { $sample_weights{$sample_name} = 1 / $cluster_size; } } return \%sample_weights; } sub _build_samples_to_clusters { my ($self) = @_; my %samples_to_clusters; for my $cluster_name ( keys %{ $self->clusters_to_samples } ) { for my $sample_name ( @{ $self->clusters_to_samples->{$cluster_name} } ) { $samples_to_clusters{$sample_name} = $cluster_name; } } return \%samples_to_clusters; } sub _build_clusters_filename { my ($self) = @_; return $self->_output_cd_hit_filename . '.clstr'; } sub _build_clusters_to_samples { my ($self) = @_; my $cdhit_obj = Bio::Roary::External::Cdhit->new( input_file => $self->input_file, output_base => $self->_output_cd_hit_filename, _length_difference_cutoff => 1, _sequence_identity_threshold => $self->identity, cpus => $self->cpus ); $cdhit_obj->run(); my $clusterd_genes = $self->_clustered_genes; for my $cluster_name ( keys %{$clusterd_genes} ) { my $found = 0; for my $gene_name ( @{ $clusterd_genes->{$cluster_name} } ) { if ( $gene_name eq $cluster_name ) { $found = 1; last; } } if ( $found == 0 ) { push( @{ $clusterd_genes->{$cluster_name} }, $cluster_name ); } } return $clusterd_genes; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/AnalyseGroups.pm000066400000000000000000000067531304207556500203450ustar00rootroot00000000000000package Bio::Roary::AnalyseGroups; # ABSTRACT: Take in a groups file and the original FASTA files and create plots and stats =head1 SYNOPSIS Take in a groups file and the original FASTA files and create plots and stats use Bio::Roary::AnalyseGroups; my $plot_groups_obj = Bio::Roary::AnalyseGroups->new( fasta_files => $fasta_files, groups_filename => $groups_filename, output_filename => $output_filename ); $plot_groups_obj->create_plots(); =cut use Moose; use Bio::Roary::Exceptions; has 'fasta_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'groups_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'summary_of_groups' ); has '_number_of_isolates' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_builder__number_of_isolates' ); has '_genes_to_file' => ( is => 'rw', isa => 'HashRef' ); has '_files_to_genes' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_builder__files_to_genes' ); has '_groups_to_genes' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_builder__groups_to_genes' ); has '_genes_to_groups' => ( is => 'rw', isa => 'HashRef' ); has '_groups' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_builder__groups' ); sub BUILD { my ($self) = @_; # This triggers _genes_to_groups to be built $self->_groups_to_genes; # This triggers _genes_to_file to be built $self->_files_to_genes; } sub _builder__groups { my ($self) = @_; my @groups = sort keys %{$self->_groups_to_genes}; return \@groups; } sub _builder__number_of_isolates { my ($self) = @_; return @{ $self->fasta_files }; } sub _builder__files_to_genes { my ($self) = @_; my %files_to_genes; my %genes_to_file; for my $filename ( @{ $self->fasta_files } ) { open( my $fh, '-|', 'grep \> ' . $filename . ' | awk \'{print $1}\' | sed \'s/>//\' ' ); while (<$fh>) { chomp; my $gene_name = $_; next if($gene_name eq ""); push( @{ $files_to_genes{$filename} }, $gene_name ); $genes_to_file{$gene_name} = $filename; } close($fh); } $self->_genes_to_file(\%genes_to_file); return \%files_to_genes; } sub _count_num_files_in_group { my ( $self, $genes ) = @_; my $count = 0; my %filename_freq; for my $gene ( @{$genes} ) { next if ( $gene eq "" ); if ( defined( $self->_genes_to_file->{$gene} ) ) { $filename_freq{ $self->_genes_to_file->{$gene} }++; } } my @uniq_filenames = keys %filename_freq; return @uniq_filenames; } sub _builder__groups_to_genes { my ($self) = @_; my %groups_to_genes; my %genes_to_groups; open( my $fh, $self->groups_filename ) or Bio::Roary::Exceptions::FileNotFound->throw( error => "Group file not found:" . $self->groups_filename ); while (<$fh>) { chomp; my $line = $_; if ( $line =~ /^(.+): (.+)$/ ) { my $group_name = $1; my $genes = $2; my @elements = split( /[\s\t]+/, $genes ); $groups_to_genes{$group_name} = \@elements; for my $gene (@elements) { $genes_to_groups{$gene} = $group_name; } } } $self->_genes_to_groups(\%genes_to_groups); return \%groups_to_genes; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/AnnotateGroups.pm000066400000000000000000000266351304207556500205230ustar00rootroot00000000000000package Bio::Roary::AnnotateGroups; # ABSTRACT: Take in a group file and associated GFF files for the isolates and update the group name to the gene name =head1 SYNOPSIS Take in a group file and associated GFF files for the isolates and update the group name to the gene name use Bio::Roary::AnnotateGroups; my $obj = Bio::Roary::AnnotateGroups->new( gff_files => ['abc.gff','efg.gff'], output_filename => 'example_output.fa', groups_filename => 'groupsfile', ); $obj->reannotate; =cut use Moose; use Bio::Roary::Exceptions; use Bio::Roary::GeneNamesFromGFF; use Array::Utils qw(array_minus); use List::Util qw(max min sum); use File::Grep qw(fgrep); has 'gff_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'reannotated_groups_file' ); has 'groups_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has '_ids_to_gene_names' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__ids_to_gene_names' ); has '_ids_to_product' => ( is => 'rw', isa => 'HashRef', default => sub { {} } ); has '_ids_to_gene_size' => ( is => 'rw', isa => 'HashRef', default => sub { {} } ); has 'group_nucleotide_lengths' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_group_nucleotide_lengths'); has '_groups_to_id_names' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_builder__groups_to_id_names' ); has '_output_fh' => ( is => 'ro', lazy => 1, builder => '_build__output_fh' ); has '_groups_to_consensus_gene_names' => ( is => 'rw', isa => 'HashRef', lazy => 1, builder => '_build__groups_to_consensus_gene_names' ); has '_filtered_gff_files' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__filtered_gff_files' ); has '_number_of_files' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build__number_of_files' ); has '_ids_to_groups' => ( is => 'rw', isa => 'HashRef', lazy => 1, builder => '_builder__ids_to_groups' ); has '_group_counter' => ( is => 'rw', isa => 'Int', lazy => 1, builder => '_builder__group_counter' ); has '_group_default_prefix' => ( is => 'rw', isa => 'Str', default => 'group_' ); has '_ids_to_verbose_stats' => ( is => 'rw', isa => 'HashRef', lazy_build => 1 ); sub BUILD { my ($self) = @_; $self->_ids_to_gene_names; } sub _builder__group_counter { my ($self) = @_; my $prefix = $self->_group_default_prefix; my $highest_group = 0; for my $group ( @{ $self->_groups } ) { if ( $group =~ /$prefix([\d]+)$/ ) { my $group_id = $1; if ( $group_id > $highest_group ) { $highest_group = $group_id; } } } return $highest_group + 1; } sub _generate__ids_to_groups { my ($self) = @_; my %ids_to_groups; for my $group ( keys %{ $self->_groups_to_id_names } ) { for my $id_name ( @{ $self->_groups_to_id_names->{$group} } ) { $ids_to_groups{$id_name} = $group; } } return \%ids_to_groups; } sub _builder__ids_to_groups { my ($self) = @_; return $self->_generate__ids_to_groups; } sub _build__output_fh { my ($self) = @_; open( my $fh, '>', $self->output_filename ) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => "Couldnt write output file:" . $self->output_filename ); return $fh; } sub _build__filtered_gff_files { my ($self) = @_; my @gff_files = grep( /\.gff$/, @{ $self->gff_files } ); return \@gff_files; } sub _build__ids_to_gene_names { my ($self) = @_; my %ids_to_gene_names; my %ids_to_product; my %ids_to_gene_size; for my $filename ( @{ $self->_filtered_gff_files } ) { my $gene_names_from_gff = Bio::Roary::GeneNamesFromGFF->new( gff_file => $filename ); my %id_to_gene_lookup = %{ $gene_names_from_gff->ids_to_gene_name }; @ids_to_gene_names{ keys %id_to_gene_lookup } = values %id_to_gene_lookup; my %id_to_product_lookup = %{ $gene_names_from_gff->ids_to_product }; @ids_to_product{ keys %id_to_product_lookup } = values %id_to_product_lookup; my %ids_to_gene_size_lookup = %{ $gene_names_from_gff->ids_to_gene_size }; @ids_to_gene_size{ keys %ids_to_gene_size_lookup } = values %ids_to_gene_size_lookup; } $self->_ids_to_product( \%ids_to_product ); $self->_ids_to_gene_size( \%ids_to_gene_size ); return \%ids_to_gene_names; } sub _build__ids_to_verbose_stats { my $self = shift; my @matches_hash = fgrep { /ID=/i } @{ $self->_filtered_gff_files }; my @matches; foreach my $m ( @matches_hash ){ push( @matches, values %{$m->{matches}} ); } # chomp @matches; my %verbose; foreach my $line ( @matches ){ my ( $id, $inf, $prod ); if( $line =~ m/ID=["']?([^;"']+)["']?;?/i ){ $id = $1; } else { next; } $inf = $1 if ( $line =~ m/inference=([^;]+);/ ); $prod = $1 if ( $line =~ m/product=([^;]+)[;\n]/ ); my %info = ( 'inference' => $inf, 'product' => $prod ); $verbose{$id} = \%info; } return \%verbose; } sub consensus_product_for_id_names { my ( $self, $id_names ) = @_; my %product_freq; for my $id_name ( @{$id_names} ) { next unless ( defined( $self->_ids_to_product->{$id_name} ) ); $product_freq{ $self->_ids_to_product->{$id_name} }++; } my @sorted_product_keys = sort { $product_freq{$b} <=> $product_freq{$a} } keys(%product_freq); if ( @sorted_product_keys > 0 ) { return $sorted_product_keys[0]; } else { return ''; } } sub _builder__groups_to_id_names { my ($self) = @_; my %groups_to_id_names; open( my $fh, $self->groups_filename ) or Bio::Roary::Exceptions::FileNotFound->throw( error => "Group file not found:" . $self->groups_filename ); while (<$fh>) { chomp; my $line = $_; if ( $line =~ /^(.+): (.+)$/ ) { my $group_name = $1; my $genes = $2; my @elements = split( /[\s\t]+/, $genes ); $groups_to_id_names{$group_name} = \@elements; } } return \%groups_to_id_names; } sub _groups { my ($self) = @_; my @groups = keys %{ $self->_groups_to_id_names }; return \@groups; } sub _ids_grouped_by_gene_name_for_group { my ( $self, $group_name ) = @_; my %gene_name_freq; for my $id_name ( @{ $self->_groups_to_id_names->{$group_name} } ) { if ( defined( $self->_ids_to_gene_names->{$id_name} ) && $self->_ids_to_gene_names->{$id_name} ne "" ) { push( @{ $gene_name_freq{ $self->_ids_to_gene_names->{$id_name} } }, $id_name ); } } return \%gene_name_freq; } sub _consensus_gene_name_for_group { my ( $self, $group_name ) = @_; my $gene_name_freq = $self->_ids_grouped_by_gene_name_for_group($group_name); my @sorted_gene_names = sort { @{ $gene_name_freq->{$b} } <=> @{ $gene_name_freq->{$a} } } keys %{$gene_name_freq}; if ( @sorted_gene_names > 0 ) { return shift(@sorted_gene_names); } else { return $group_name; } } sub _build_group_nucleotide_lengths { my ($self) = @_; my %group_nucleotide_lengths; for my $group_name (keys %{ $self->_groups_to_id_names } ) { my @gene_lengths; for my $gene_id (@{$self->_groups_to_id_names->{$group_name}}) { my $current_gene_size = $self->_ids_to_gene_size->{$gene_id}; next unless(defined($current_gene_size) ); next if($current_gene_size < 1); push(@gene_lengths, $current_gene_size); } next if(@gene_lengths == 0); my $average_gene_size = (int((sum @gene_lengths)/@gene_lengths)) || 0; my $min_gene_size = (min @gene_lengths) || 0; my $max_gene_size = (max @gene_lengths) || 0; $group_nucleotide_lengths{$group_name} = {'min' => $min_gene_size, 'max' =>$max_gene_size , 'average' => $average_gene_size}; } return \%group_nucleotide_lengths; } sub _generate_groups_to_consensus_gene_names { my ($self) = @_; my %groups_to_gene_names; my %gene_name_freq; my $group_prefix = $self->_group_default_prefix; # These are already annotated for my $group_name ( sort { @{ $self->_groups_to_id_names->{$b} } <=> @{ $self->_groups_to_id_names->{$a} } } keys %{ $self->_groups_to_id_names } ) { next if ( $group_name =~ /$group_prefix/ ); $groups_to_gene_names{$group_name} = $group_name; } for my $group_name ( sort { @{ $self->_groups_to_id_names->{$b} } <=> @{ $self->_groups_to_id_names->{$a} } } keys %{ $self->_groups_to_id_names } ) { next unless ( $group_name =~ /$group_prefix/ ); my $consensus_gene_name = $self->_consensus_gene_name_for_group($group_name); if ( defined( $gene_name_freq{$consensus_gene_name} ) ) { $groups_to_gene_names{$group_name} = $group_name; } else { $groups_to_gene_names{$group_name} = $consensus_gene_name; $gene_name_freq{$consensus_gene_name}++; } } return \%groups_to_gene_names; } sub _build__groups_to_consensus_gene_names { my ($self) = @_; return $self->_generate_groups_to_consensus_gene_names; } sub _build__number_of_files { my ($self) = @_; return @{ $self->gff_files }; } sub _split_groups { my ($self) = @_; $self->_groups_to_consensus_gene_names( $self->_generate_groups_to_consensus_gene_names ); $self->_ids_to_groups( $self->_generate__ids_to_groups ); } sub _remove_ids_from_group { my ( $self, $ids_to_remove, $group ) = @_; my @remaining_ids = array_minus( @{ $self->_groups_to_id_names->{$group} }, @{ $ids_to_remove } ); $self->_groups_to_id_names->{$group} = \@remaining_ids; if ( @{ $self->_groups_to_id_names->{$group} } == 0 ) { delete( $self->_groups_to_id_names->{$group} ); } } sub reannotate { my ($self) = @_; $self->_split_groups; my %groups_to_id_names = %{ $self->_groups_to_id_names }; for my $group_name ( sort { @{ $groups_to_id_names{$b} } <=> @{ $groups_to_id_names{$a} } } keys %groups_to_id_names ) { my $consensus_gene_name = $self->_groups_to_consensus_gene_names->{$group_name}; print { $self->_output_fh } $consensus_gene_name . ": " . join( "\t", @{ $self->_groups_to_id_names->{$group_name} } ) . "\n"; } close( $self->_output_fh ); return $self; } sub full_annotation { my ( $self, $group ) = @_; my @id_names = @{ $self->_groups_to_id_names->{$group} }; my %product_freq; for my $id_name ( @id_names ) { next unless ( defined( $self->_ids_to_verbose_stats->{$id_name}->{'product'} ) ); $product_freq{ $self->_ids_to_verbose_stats->{$id_name}->{'product'} }++; } my @sorted_product_keys = sort { $product_freq{$b} <=> $product_freq{$a} } keys(%product_freq); if ( @sorted_product_keys > 0 ) { return join('; ', @sorted_product_keys); } else { return ''; } } sub inference { my ( $self, $group ) = @_; my @infs; foreach my $g ( @{ $self->_groups_to_id_names->{$group} } ){ next unless ( defined $self->_ids_to_verbose_stats->{$g}->{'inference'} ); push( @infs, $self->_ids_to_verbose_stats->{$g}->{'inference'} ); } # maybe make a consensus in the future? return $infs[0]; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/AssemblyStatistics.pm000066400000000000000000000177101304207556500213760ustar00rootroot00000000000000package Bio::Roary::AssemblyStatistics; # ABSTRACT: Given a spreadsheet of gene presence and absence calculate some statistics =head1 SYNOPSIS Given a spreadsheet of gene presence and absence calculate some statistics =cut use Moose; use Bio::Roary::ExtractCoreGenesFromSpreadsheet; use Log::Log4perl qw(:easy); with 'Bio::Roary::SpreadsheetRole'; has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'assembly_statistics.csv' ); has 'job_runner' => ( is => 'ro', isa => 'Str', default => 'Local' ); has 'cpus' => ( is => 'ro', isa => 'Int', default => 1 ); has 'core_definition' => ( is => 'rw', isa => 'Num', default => 0.99 ); has '_cloud_percentage' => ( is => 'rw', isa => 'Num', default => 0.15 ); has '_shell_percentage' => ( is => 'rw', isa => 'Num', default => 0.95 ); has '_soft_core_percentage' => ( is => 'rw', isa => 'Num', default => 0.99 ); has 'verbose' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'contiguous_window' => ( is => 'ro', isa => 'Int', default => 10 ); has 'ordered_genes' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build_ordered_genes' ); has '_genes_to_rows' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__genes_to_rows' ); has 'all_sample_statistics' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_all_sample_statistics' ); has 'sample_names_to_column_index' => ( is => 'rw', isa => 'Maybe[HashRef]' ); has 'summary_output_filename'=> ( is => 'ro', isa => 'Str', default => 'summary_statistics.txt' ); has 'logger' => ( is => 'ro', lazy => 1, builder => '_build_logger'); has 'gene_category_count' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_gene_category_count' ); sub BUILD { my ($self) = @_; $self->_genes_to_rows; $self->gene_category_count; } sub _build_logger { my ($self) = @_; Log::Log4perl->easy_init( $ERROR ); my $logger = get_logger(); return $logger; } sub create_summary_output { my ($self) = @_; open(my $fh, '>', $self->summary_output_filename) or Bio::Roary::Exceptions::CouldntWriteToFile->throw(error => "Couldnt write to ".$self->summary_output_filename); my $core_percentage = $self->core_definition()*100; my $soft_core_percentage = $self->_soft_core_percentage*100; my $shell_percentage = $self->_shell_percentage()*100; my $cloud_percentage = $self->_cloud_percentage()*100; my $core_genes = ($self->gene_category_count->{core} ? $self->gene_category_count->{core} : 0); my $soft_core_genes = ($self->gene_category_count->{soft_core} ? $self->gene_category_count->{soft_core} : 0); my $shell_genes =($self->gene_category_count->{shell} ? $self->gene_category_count->{shell} : 0); my $cloud_genes = ($self->gene_category_count->{cloud} ? $self->gene_category_count->{cloud} : 0); my $total_genes = $core_genes + $soft_core_genes + $shell_genes + $cloud_genes ; $self->logger->warn("Very few core genes detected with the current settings. Try modifying the core definition ( -cd 90 ) and/or the blast identity (-i 70) parameters. Also try checking for contamination (-qc) and ensure you only have one species.") if($core_genes < 100); print {$fh} "Core genes\t($core_percentage".'% <= strains <= 100%)'."\t$core_genes\n"; print {$fh} "Soft core genes\t(".$shell_percentage."% <= strains < ".$soft_core_percentage."%)\t$soft_core_genes\n"; print {$fh} "Shell genes\t(".$cloud_percentage."% <= strains < ".$shell_percentage."%)\t$shell_genes\n"; print {$fh} "Cloud genes\t(0% <= strains < ".$cloud_percentage."%)\t$cloud_genes\n"; print {$fh} "Total genes\t(0% <= strains <= 100%)\t$total_genes\n"; close($fh); return 1; } sub _build_gene_category_count { my ($self) = @_; my %gene_category_count; $self->_soft_core_percentage($self->core_definition); if ( $self->_soft_core_percentage <= $self->_shell_percentage ) { $self->_shell_percentage( $self->_soft_core_percentage - 0.01 ); } my $number_of_samples = keys %{ $self->sample_names_to_column_index }; for my $gene_name ( keys %{ $self->_genes_to_rows } ) { my $isolates_with_gene = 0; for ( my $i = $self->_num_fixed_headers ; $i < @{ $self->_genes_to_rows->{$gene_name} } ; $i++ ) { $isolates_with_gene++ if ( defined( $self->_genes_to_rows->{$gene_name}->[$i] ) && $self->_genes_to_rows->{$gene_name}->[$i] ne "" ); } if ( $isolates_with_gene < $self->_cloud_percentage() * $number_of_samples ) { $gene_category_count{cloud}++; } elsif ( $isolates_with_gene < $self->_shell_percentage() * $number_of_samples ) { $gene_category_count{shell}++; } elsif ( $isolates_with_gene < $self->_soft_core_percentage() * $number_of_samples ) { $gene_category_count{soft_core}++; } else { $gene_category_count{core}++; } } return \%gene_category_count; } sub _build_ordered_genes { my ($self) = @_; return Bio::Roary::ExtractCoreGenesFromSpreadsheet->new( spreadsheet => $self->spreadsheet, core_definition => $self->core_definition ) ->ordered_core_genes(); } sub _build__genes_to_rows { my ($self) = @_; my %genes_to_rows; seek( $self->_input_spreadsheet_fh, 0, 0 ); my $header_row = $self->_csv_parser->getline( $self->_input_spreadsheet_fh ); $self->_populate_sample_names_to_column_index($header_row); while ( my $row = $self->_csv_parser->getline( $self->_input_spreadsheet_fh ) ) { next if ( !defined( $row->[0] ) || $row->[0] eq "" ); $genes_to_rows{ $row->[0] } = $row; } return \%genes_to_rows; } sub _populate_sample_names_to_column_index { my ( $self, $row ) = @_; my %samples_to_index; for ( my $i = $self->_num_fixed_headers ; $i < @{$row} ; $i++ ) { next if ( ( !defined( $row->[$i] ) ) || $row->[$i] eq "" ); $samples_to_index{ $row->[$i] } = $i; } $self->sample_names_to_column_index( \%samples_to_index ); } sub _build_all_sample_statistics { my ($self) = @_; my %sample_stats; # For each sample - loop over genes in order - number of contiguous blocks - max size of contiguous block - n50 - incorrect joins for my $sample_name ( sort keys %{ $self->sample_names_to_column_index } ) { $sample_stats{$sample_name} = $self->_sample_statistics($sample_name); } return \%sample_stats; } sub _sample_statistics { my ( $self, $sample_name ) = @_; my $sample_column_index = $self->sample_names_to_column_index->{$sample_name}; my @gene_ids; for my $gene_name ( @{ $self->ordered_genes } ) { my $sample_gene_id = $self->_genes_to_rows->{$gene_name}->[$sample_column_index]; next unless ( defined($sample_gene_id) ); if ( $sample_gene_id =~ /_([\d]+)$/ ) { my $gene_number = $1; push( @gene_ids, $gene_number ); } else { next; } } return $self->_number_of_contiguous_blocks( \@gene_ids ); } sub _number_of_contiguous_blocks { my ( $self, $gene_ids ) = @_; my $current_gene_id = $gene_ids->[0]; my $number_of_blocks = 1; my $largest_block_size = 0; my $block_size = 0; for my $gene_id ( @{$gene_ids} ) { if ( !( ( $current_gene_id + $self->contiguous_window >= $gene_id ) && ( $current_gene_id - $self->contiguous_window <= $gene_id ) ) ) { if ( $block_size >= $largest_block_size ) { $largest_block_size = $block_size; $block_size = 0; } $number_of_blocks++; } $current_gene_id = $gene_id; $block_size++; } if ( $block_size > $largest_block_size ) { $largest_block_size = $block_size; } return { num_blocks => $number_of_blocks, largest_block_size => $largest_block_size }; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/BedFromGFFRole.pm000066400000000000000000000037351304207556500202310ustar00rootroot00000000000000package Bio::Roary::BedFromGFFRole; # ABSTRACT: A role to create a bed file from a gff =head1 SYNOPSIS A role to create a bed file from a gff with 'Bio::Roary::BedFromGFFRole'; =cut use Moose::Role; use Bio::Tools::GFF; has '_tags_to_filter' => ( is => 'ro', isa => 'Str', default => '(CDS|ncRNA|tRNA|tmRNA|rRNA)' ); has 'min_gene_size_in_nucleotides' => ( is => 'ro', isa => 'Int', default => 120 ); has 'output_directory' => ( is => 'ro', isa => 'Str', default => '.' ); sub _bed_output_filename { my ($self) = @_; return join('/',($self->output_directory,join( '.', ( $self->output_filename, 'intermediate.bed' ) ))); } sub _create_bed_file_from_gff { my ($self) = @_; open( my $bed_fh, '>', $self->_bed_output_filename ); my $gffio = Bio::Tools::GFF->new( -file => $self->gff_file, -gff_version => 3 ); while ( my $feature = $gffio->next_feature() ) { next unless defined($feature); # Only interested in a few tags my $tags_regex = $self->_tags_to_filter; next if !( $feature->primary_tag =~ /$tags_regex/ ); # Must have an ID tag my $gene_id = $self->_get_feature_id($feature); next unless($gene_id); #filter out small genes next if ( ( $feature->end - $feature->start ) < $self->min_gene_size_in_nucleotides ); my $strand = ($feature->strand > 0)? '+':'-' ; print {$bed_fh} join( "\t", ( $feature->seq_id, $feature->start -1, $feature->end, $gene_id, 1, $strand ) ) . "\n"; } $gffio->close(); } sub _get_feature_id { my ($self, $feature) = @_; my ( $gene_id, @junk ) ; if ( $feature->has_tag('ID') ) { ( $gene_id, @junk ) = $feature->get_tag_values('ID'); } elsif($feature->has_tag('locus_tag')) { ( $gene_id, @junk ) = $feature->get_tag_values('locus_tag'); } else { return undef; } $gene_id =~ s!["']!!g; return undef if ( $gene_id eq "" ); return $gene_id ; } 1; Roary-3.8.0/lib/Bio/Roary/ChunkFastaFile.pm000066400000000000000000000050331304207556500203660ustar00rootroot00000000000000package Bio::Roary::ChunkFastaFile; # ABSTRACT: Take in a FASTA file and chunk it up into smaller pieces. =head1 SYNOPSIS Take in a FASTA file and chunk it up into smaller pieces. use Bio::Roary::ChunkFastaFile; my $obj = Bio::Roary::ChunkFastaFile->new( fasta_file => 'abc.fa', ); $obj->sequence_file_names; =cut use Moose; use Bio::SeqIO; use Bio::Roary::Exceptions; use Cwd; use File::Temp; has 'fasta_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'target_chunk_size' => ( is => 'ro', isa => 'Int', default => 200000 ); has 'sequence_file_names' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build_sequence_file_names' ); has '_working_directory' => ( is => 'ro', isa => 'File::Temp::Dir', default => sub { File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } ); has '_working_directory_name' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__working_directory_name' ); has '_input_seqio' => ( is => 'ro', isa => 'Bio::SeqIO', lazy => 1, builder => '_build__input_seqio' ); sub _build__working_directory_name { my ($self) = @_; return $self->_working_directory->dirname(); } sub _build__input_seqio { my ($self) = @_; return Bio::SeqIO->new( -file => $self->fasta_file, -format => 'Fasta' ); } sub _create_next_chunk_file_name { my ( $self, $chunk_number ) = @_; return join( '/', ( $self->_working_directory_name, $chunk_number . '.seq' ) ); } sub _create_next_chunk_seqio { my ( $self, $chunk_number ) = @_; return Bio::SeqIO->new( -file => ">".$self->_create_next_chunk_file_name($chunk_number), -format => 'Fasta' ); } sub _build_sequence_file_names { my ($self) = @_; my @sequence_file_names; my $chunk_number = 0; my $current_chunk_length = 0; my $current_chunk_seqio = $self->_create_next_chunk_seqio($chunk_number); push( @sequence_file_names, $self->_create_next_chunk_file_name($chunk_number) ); while ( my $input_seq = $self->_input_seqio->next_seq() ) { if ( $current_chunk_length > $self->target_chunk_size ) { # next chunk $chunk_number++; $current_chunk_length = 0; $current_chunk_seqio = $self->_create_next_chunk_seqio($chunk_number); push( @sequence_file_names, $self->_create_next_chunk_file_name($chunk_number) ); } $current_chunk_seqio->write_seq($input_seq); $current_chunk_length += $input_seq->length(); } return \@sequence_file_names; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/ClustersRole.pm000066400000000000000000000032631304207556500201700ustar00rootroot00000000000000package Bio::Roary::ClustersRole; # ABSTRACT: A role to read a clusters file from CD hit =head1 SYNOPSIS A role to read a clusters file from CD hit with 'Bio::Roary::ClustersRole'; =cut use Moose::Role; use Bio::Roary::Exceptions; has 'clusters_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has '_clustered_genes' => ( is => 'ro',lazy => 1, builder => '_build__clustered_genes' ); has '_clusters_fh' => ( is => 'ro',lazy => 1, builder => '_build__clusters_fh' ); sub _build__clusters_fh { my($self) = @_; open(my $fh, $self->clusters_filename) or Bio::Roary::Exceptions::FileNotFound->throw( error => 'Cant open file: ' . $self->clusters_filename ); return $fh; } sub _build__clustered_genes { my($self) = @_; my $fh = $self->_clusters_fh; my %clustered_genes ; my %raw_clusters; my $current_cluster_name; while(<$fh>) { my $line = $_; if($line =~ /^>(.+)$/) { $current_cluster_name = $1; } #>Cluster 5 #0 4201aa, >6630_4#9_00008... * #1 4201aa, >6631_1#23_00379... at 100.00% if($line =~ /[\d]+\t[\w]+, >(.+)\.\.\. (.+)$/) { my $gene_name = $1; my $identity = $2; if($identity eq '*') { $raw_clusters{$current_cluster_name}{representative_gene_name} = $gene_name; } else { push(@{$raw_clusters{$current_cluster_name}{gene_names}}, $gene_name); } } } # iterate over the raw clusters and convert to a simple hash for my $cluster_name (keys %raw_clusters) { $clustered_genes{$raw_clusters{$cluster_name}{representative_gene_name}} = $raw_clusters{$cluster_name}{gene_names}; } return \%clustered_genes; } 1;Roary-3.8.0/lib/Bio/Roary/CombinedProteome.pm000066400000000000000000000025461304207556500210000ustar00rootroot00000000000000package Bio::Roary::CombinedProteome; # ABSTRACT: Take in multiple FASTA sequences containing proteomes and concat them together and output a FASTA file, filtering out more than 5% X's =head1 SYNOPSIS Take in multiple FASTA sequences containing proteomes and concat them together and output a FASTA file, filtering out more than 5% X's use Bio::Roary::CombinedProteome; my $obj = Bio::Roary::CombinedProteome->new( proteome_files => ['abc.fa','efg.fa'], output_filename => 'example_output.fa', maximum_percentage_of_unknowns => 5.0, ); $obj->create_combined_proteome_file; =cut use Moose; use Bio::Roary::Exceptions; has 'proteome_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'combined_output.fa' ); sub BUILD { my ($self) = @_; for my $filename ( @{ $self->proteome_files } ) { Bio::Roary::Exceptions::FileNotFound->throw( error => 'Cant open file: ' . $filename ) unless ( -e $filename ); } } sub create_combined_proteome_file { my ($self) = @_; unlink($self->output_filename); for my $filename (@{$self->proteome_files }) { system(join(' ', ("cat", $filename, ">>", $self->output_filename))); } 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/000077500000000000000000000000001304207556500173665ustar00rootroot00000000000000Roary-3.8.0/lib/Bio/Roary/CommandLine/AssemblyStatistics.pm000066400000000000000000000077371304207556500235740ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::AssemblyStatistics; # ABSTRACT: Given a spreadsheet of gene presence and absence calculate some statistics =head1 SYNOPSIS Given a spreadsheet of gene presence and absence calculate some statistics =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary::AssemblyStatistics; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'spreadsheet' => ( is => 'rw', isa => 'Str', default => 'gene_presence_absence.csv' ); has 'job_runner' => ( is => 'rw', isa => 'Str', default => 'Local' ); has 'cpus' => ( is => 'rw', isa => 'Int', default => 1 ); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'assembly_statistics.csv' ); has 'version' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'core_definition' => ( is => 'rw', isa => 'Num', default => 0.99 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); sub BUILD { my ($self) = @_; my ( $spreadsheet, $job_runner, $cpus, $output_filename, $version, $core_definition, $verbose, $help ); GetOptionsFromArray( $self->args, 'o|output_filename=s' => \$output_filename, 'j|job_runner=s' => \$job_runner, 'p|processors=i' => \$cpus, 'cd|core_definition=f' => \$core_definition, 'v|verbose' => \$verbose, 'w|version' => \$version, 'h|help' => \$help, ); $self->version($version) if ( defined($version) ); if ( $self->version ) { die($self->_version()); } if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } $self->help($help) if ( defined($help) ); ( !$self->help ) or die $self->usage_text; if(@{$self->args} == 0) { $self->logger->error("Error: You need to provide a gene_presence_absence.csv spreadsheet"); die $self->usage_text; } $self->output_filename($output_filename) if ( defined($output_filename) ); $self->job_runner($job_runner) if ( defined($job_runner) ); $self->cpus($cpus) if ( defined($cpus) ); if ( $self->cpus > 1 ) { $self->job_runner('Parallel'); } $self->core_definition( $core_definition / 100 ) if ( defined($core_definition) ); for my $filename ( @{ $self->args } ) { if ( !-e $filename ) { $self->logger->error("Error: Cant access file $filename"); die $self->usage_text; } } $self->spreadsheet( $self->args->[0] ); } sub _version { my ($self) = @_; if(defined($Bio::Roary::CommandLine::AssemblyStatistics::VERSION)) { return $Bio::Roary::CommandLine::AssemblyStatistics::VERSION ."\n"; } else { return "x.y.z\n"; } } sub run { my ($self) = @_; my $obj = Bio::Roary::AssemblyStatistics->new( spreadsheet => $self->spreadsheet, logger => $self->logger ); $obj->create_summary_output; } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/Common.pm000066400000000000000000000017321304207556500211570ustar00rootroot00000000000000package Bio::Roary::CommandLine::Common; # ABSTRACT: Common command line settings =head1 SYNOPSIS Common command line settings extends 'Bio::Roary::CommandLine::Common'; =cut use Moose; use FindBin; use Log::Log4perl qw(:easy); has 'logger' => ( is => 'ro', lazy => 1, builder => '_build_logger'); has 'version' => ( is => 'rw', isa => 'Bool', default => 0 ); sub _build_logger { my ($self) = @_; Log::Log4perl->easy_init($ERROR); my $logger = get_logger(); return $logger; } sub run { my ($self) = @_; } sub usage_text { my ($self) = @_; return "Usage text"; } sub _version { my ($self) = @_; return "x.y.z\n"; } # add our included binaries to the END of the PATH before 'run' => sub { my ($self) = @_; my $OPSYS = $^O; my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS"; for my $dir ($BINDIR, $FindBin::RealBin) { if (-d $dir) { $ENV{PATH} .= ":$dir"; } } }; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/CreatePanGenome.pm000066400000000000000000000053321304207556500227240ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::CreatePanGenome; # ABSTRACT: Take in FASTA files of proteins and cluster them =head1 SYNOPSIS Take in FASTA files of proteins and cluster them =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary; use Bio::Roary::PrepareInputFiles; use Bio::Roary::QC::Report; extends 'Bio::Roary::CommandLine::Roary'; has 'job_runner' => ( is => 'rw', isa => 'Str', default => 'Local' ); has 'output_multifasta_files' => ( is => 'rw', isa => 'Bool', default => 1 ); has 'dont_create_rplots' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'core_definition' => ( is => 'rw', isa => 'Num', default => 0.99 ); has 'run_qc' => ( is => 'rw', isa => 'Bool', default => 1 ); sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm000066400000000000000000000076651304207556500243360ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::ExtractProteomeFromGff; # ABSTRACT: Take in GFF files and output the proteome =head1 SYNOPSIS Take in a GFF file and output the proteome =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary::ExtractProteomeFromGFF; use File::Basename; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'gff_files' => ( is => 'rw', isa => 'ArrayRef' ); has 'output_suffix' => ( is => 'rw', isa => 'Str', default => 'proteome.faa' ); has '_error_message' => ( is => 'rw', isa => 'Str' ); has 'apply_unknowns_filter' => ( is => 'rw', isa => 'Bool', default => 1 ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'output_directory' => ( is => 'rw', isa => 'Str', default => '.' ); sub BUILD { my ($self) = @_; my ( $gff_files, $output_suffix, $apply_unknowns_filter, $help, $translation_table, $verbose, $cmd_version, $output_directory ); GetOptionsFromArray( $self->args, 'o|output_suffix=s' => \$output_suffix, 'f|apply_unknowns_filter=i' => \$apply_unknowns_filter, 't|translation_table=i' => \$translation_table, 'v|verbose' => \$verbose, 'd|output_directory=s' => \$output_directory, 'w|version' => \$cmd_version, 'h|help' => \$help, ); if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } $self->help($help) if(defined($help)); ( !$self->help ) or die $self->usage_text; $self->version($cmd_version) if ( defined($cmd_version) ); if ( $self->version ) { die($self->_version()); } if ( @{ $self->args } == 0 ) { $self->_error_message("Error: You need to provide a GFF file"); } $self->output_suffix($output_suffix) if ( defined($output_suffix) ) ; $self->apply_unknowns_filter($apply_unknowns_filter) if ( defined($apply_unknowns_filter) ); $self->translation_table($translation_table) if ( defined($translation_table) ); $self->output_directory($output_directory) if ( defined($output_directory) ); for my $filename ( @{ $self->args } ) { if ( !-e $filename ) { $self->_error_message("Error: Cant access file $filename"); last; } } $self->gff_files( $self->args ); } sub run { my ($self) = @_; if ( defined( $self->_error_message ) ) { print $self->_error_message . "\n"; die $self->usage_text; } for my $gff_file ( @{ $self->gff_files } ) { my ( $filename, $directories, $suffix ) = fileparse($gff_file); my $obj = Bio::Roary::ExtractProteomeFromGFF->new( gff_file => $gff_file, output_filename => $filename . '.' . $self->output_suffix, apply_unknowns_filter => $self->apply_unknowns_filter, translation_table => $self->translation_table, output_directory => $self->output_directory, ); $obj->fasta_file(); } } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm000066400000000000000000000104361304207556500254700ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::GeneAlignmentFromNucleotides; # ABSTRACT: Take in a multifasta file of nucleotides, convert to proteins and align with PRANK =head1 SYNOPSIS Take in a multifasta file of nucleotides, convert to proteins and align with PRANK or MAFFT, reverse translate back to nucleotides =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use File::Copy; use Bio::Roary::AnnotateGroups; use Bio::Roary::External::Prank; use Bio::Roary::Output::GroupsMultifastaProtein; use Bio::Roary::SortFasta; use Bio::Roary::External::Mafft; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'nucleotide_fasta_files' => ( is => 'rw', isa => 'ArrayRef' ); has '_error_message' => ( is => 'rw', isa => 'Str' ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'mafft' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_min_similarity' => ( is => 'rw', isa => 'Num', default => 0.98 ); sub BUILD { my ($self) = @_; my ( $nucleotide_fasta_files, $help, $verbose,$mafft, ); GetOptionsFromArray( $self->args, 'v|verbose' => \$verbose, 'n|mafft' => \$mafft, 'h|help' => \$help, ); if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } $self->mafft($mafft) if (defined($mafft)); $self->help($help) if ( defined($help) ); if ( @{ $self->args } == 0 ) { $self->_error_message("Error: You need to provide at least 1 FASTA file"); } for my $filename ( @{ $self->args } ) { if ( !-e $filename ) { $self->_error_message("Error: Cant access file $filename"); last; } } $self->nucleotide_fasta_files( $self->args ); } sub run { my ($self) = @_; ( !$self->help ) or die $self->usage_text; if ( defined( $self->_error_message ) ) { print $self->_error_message . "\n"; die $self->usage_text; } for my $fasta_file ( @{ $self->nucleotide_fasta_files } ) { my $sort_fasta_before = Bio::Roary::SortFasta->new( input_filename => $fasta_file, make_multiple_of_three => 1, ); $sort_fasta_before->sort_fasta->replace_input_with_output_file; if ( $sort_fasta_before->sequences_unaligned == 1 || $sort_fasta_before->sequences_unaligned == 0 && $sort_fasta_before->similarity <= $self->_min_similarity) { if ( $self->mafft == 1 ) { my $mafft_obj = Bio::Roary::External::Mafft->new( input_filename => $fasta_file, output_filename => $fasta_file . '.aln', job_runner => 'Local', logger => $self->logger, verbose => $self->verbose ); $mafft_obj->run(); } else { my $prank_obj = Bio::Roary::External::Prank->new( input_filename => $fasta_file, output_filename => $fasta_file . '.aln', job_runner => 'Local', logger => $self->logger, verbose => $self->verbose ); $prank_obj->run(); } } else { move( $fasta_file, $fasta_file . '.aln' ); } my $sort_fasta_after_revtrans = Bio::Roary::SortFasta->new( input_filename => $fasta_file . '.aln', remove_nnn_from_end => 1, ); $sort_fasta_after_revtrans->sort_fasta->replace_input_with_output_file; unlink($fasta_file); } } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/IterativeCdhit.pm000066400000000000000000000122331304207556500226350ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::IterativeCdhit; # ABSTRACT: Iteratively run cdhit =head1 SYNOPSIS Iteratively run cdhit =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary::IterativeCdhit; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_error_message' => ( is => 'rw', isa => 'Str' ); has 'output_cd_hit_filename' => ( is => 'rw', isa => 'Str', default => '_clustered' ); has 'output_combined_filename' => ( is => 'rw', isa => 'Str', default => '_combined_files' ); has 'number_of_input_files' => ( is => 'rw', isa => 'Int', default => 1 ); has 'output_filtered_clustered_fasta' => ( is => 'rw', isa => 'Str', default => '_clustered_filtered.fa' ); has 'lower_bound_percentage' => ( is => 'rw', isa => 'Num', default => 0.98 ); has 'upper_bound_percentage' => ( is => 'rw', isa => 'Num', default => 0.99 ); has 'step_size_percentage' => ( is => 'rw', isa => 'Num', default => 0.005 ); has 'cpus' => ( is => 'rw', isa => 'Int', default => 1 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); sub BUILD { my ($self) = @_; my ( $output_cd_hit_filename,$cpus,$lower_bound_percentage,$upper_bound_percentage,$step_size_percentage, $output_combined_filename, $number_of_input_files, $output_filtered_clustered_fasta,$verbose, $help ); GetOptionsFromArray( $self->args, 'c|output_cd_hit_filename=s' => \$output_cd_hit_filename, 'm|output_combined_filename=s' => \$output_combined_filename, 'n|number_of_input_files=i' => \$number_of_input_files, 'f|output_filtered_clustered_fasta=s' => \$output_filtered_clustered_fasta, 'l|lower_bound_percentage=s' => \$lower_bound_percentage, 'u|upper_bound_percentage=s' => \$upper_bound_percentage, 's|step_size_percentage=s' => \$step_size_percentage, 'p|cpus=i' => \$cpus, 'v|verbose' => \$verbose, 'h|help' => \$help, ); if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } $self->help($help) if(defined($help)); $self->lower_bound_percentage($lower_bound_percentage/100) if ( defined($lower_bound_percentage) ); $self->upper_bound_percentage($upper_bound_percentage/100) if ( defined($upper_bound_percentage) ); $self->step_size_percentage($step_size_percentage/100) if ( defined($step_size_percentage) ); $self->output_cd_hit_filename($output_cd_hit_filename) if ( defined($output_cd_hit_filename) ); $self->output_combined_filename($output_combined_filename) if ( defined($output_combined_filename) ); $self->number_of_input_files($number_of_input_files) if ( defined($number_of_input_files) ); $self->cpus($cpus) if ( defined($cpus) ); $self->output_filtered_clustered_fasta($output_filtered_clustered_fasta) if ( defined($output_filtered_clustered_fasta) ); } sub run { my ($self) = @_; ( !$self->help ) or die $self->usage_text; if ( defined( $self->_error_message ) ) { print $self->_error_message . "\n"; die $self->usage_text; } my $obj = Bio::Roary::IterativeCdhit->new( output_cd_hit_filename => $self->output_cd_hit_filename, output_combined_filename => $self->output_combined_filename, number_of_input_files => $self->number_of_input_files, output_filtered_clustered_fasta => $self->output_filtered_clustered_fasta, lower_bound_percentage => $self->lower_bound_percentage, upper_bound_percentage => $self->upper_bound_percentage, step_size_percentage => $self->step_size_percentage, cpus => $self->cpus, logger => $self->logger ); $obj->run; } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm000066400000000000000000000112741304207556500252240ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp; # ABSTRACT: Take in a FASTA file of proteins and blast against itself =head1 SYNOPSIS Take in a FASTA file of proteins and blast against itself =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary::ParallelAllAgainstAllBlast; use Bio::Roary::CombinedProteome; use Bio::Roary::PrepareInputFiles; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'fasta_files' => ( is => 'rw', isa => 'ArrayRef' ); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'blast_results' ); has 'job_runner' => ( is => 'rw', isa => 'Str', default => 'Local' ); has 'cpus' => ( is => 'rw', isa => 'Int', default => 1 ); has 'makeblastdb_exec' => ( is => 'rw', isa => 'Str', default => 'makeblastdb' ); has 'blastp_exec' => ( is => 'rw', isa => 'Str', default => 'blastp' ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_error_message' => ( is => 'rw', isa => 'Str' ); sub BUILD { my ($self) = @_; my ( $fasta_files, $output_filename, $job_runner, $makeblastdb_exec, $blastp_exec, $help, $cpus, $verbose, ); GetOptionsFromArray( $self->args, 'o|output=s' => \$output_filename, 'j|job_runner=s' => \$job_runner, 'm|makeblastdb_exec=s' => \$makeblastdb_exec, 'b|blastp_exec=s' => \$blastp_exec, 'p|processors=i' => \$cpus, 'v|verbose' => \$verbose, 'h|help' => \$help, ); if ( @{ $self->args } == 0 ) { $self->_error_message("Error: You need to provide a FASTA file"); } if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } $self->help($help) if(defined($help)); $self->output_filename($output_filename) if ( defined($output_filename) ); $self->makeblastdb_exec($makeblastdb_exec) if ( defined($makeblastdb_exec) ); $self->blastp_exec($blastp_exec) if ( defined($blastp_exec) ); $self->job_runner($job_runner) if ( defined($job_runner) ); $self->cpus($cpus) if ( defined($cpus) ); if ( $self->cpus > 1 ) { $self->job_runner('Parallel'); } for my $filename ( @{ $self->args } ) { if ( !-e $filename ) { $self->_error_message("Error: Cant access file $filename"); last; } } $self->fasta_files( $self->args ); } sub run { my ($self) = @_; ( !$self->help ) or die $self->usage_text; if ( defined( $self->_error_message ) ) { print $self->_error_message . "\n"; die $self->usage_text; } my $prepare_input_files = Bio::Roary::PrepareInputFiles->new( input_files => $self->fasta_files, ); my $output_combined_filename; if(@{$self->fasta_files} > 1) { $output_combined_filename = 'combined_files.fa'; $self->logger->info("Combining protein files"); my $combine_fasta_files = Bio::Roary::CombinedProteome->new( proteome_files => $prepare_input_files->fasta_files, output_filename => $output_combined_filename, maximum_percentage_of_unknowns => 5.0, apply_unknowns_filter => 0 ); $combine_fasta_files->create_combined_proteome_file; } else { $output_combined_filename = $self->fasta_files->[0]; } $self->logger->info("Beginning all against all blast"); my $blast_obj = Bio::Roary::ParallelAllAgainstAllBlast->new( fasta_file => $output_combined_filename, blast_results_file_name => $self->output_filename, job_runner => $self->job_runner, cpus => $self->cpus, makeblastdb_exec => $self->makeblastdb_exec, blastp_exec => $self->blastp_exec, logger => $self->logger ); $blast_obj->run(); } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/QueryRoary.pm000066400000000000000000000230431304207556500220500ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::QueryRoary; # ABSTRACT: Take in a groups file and the protein fasta files and output selected data =head1 SYNOPSIS Take in a groups file and the protein fasta files and output selected data =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary::AnalyseGroups; use Bio::Roary::Output::GroupsMultifastas; use Bio::Roary::Output::QueryGroups; use Bio::Roary::PrepareInputFiles; use Bio::Roary::Output::DifferenceBetweenSets; use Bio::Roary::AnnotateGroups; use Bio::Roary::GroupStatistics; use Bio::Roary::OrderGenes; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'rw', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'input_files' => ( is => 'rw', isa => 'ArrayRef' ); has 'groups_filename' => ( is => 'rw', isa => 'Str', default => 'clustered_proteins'); has 'group_names' => ( is => 'rw', isa => 'ArrayRef' ); has 'input_set_one' => ( is => 'rw', isa => 'ArrayRef' ); has 'input_set_two' => ( is => 'rw', isa => 'ArrayRef' ); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'pan_genome_results' ); has 'action' => ( is => 'rw', isa => 'Str', default => 'union' ); has 'core_definition' => ( is => 'rw', isa => 'Num', default => 0.99 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_error_message' => ( is => 'rw', isa => 'Str' ); sub BUILD { my ($self) = @_; my ( $input_files, $output_filename, $groups_filename, @group_names, @input_set_one, @input_set_two, $action, $core_definition,$verbose, $help ); GetOptionsFromArray( $self->args, 'o|output=s' => \$output_filename, 'g|groups_filename=s' => \$groups_filename, 'n|group_names=s' => \@group_names, 'a|action=s' => \$action, 'i|input_set_one=s' => \@input_set_one, 't|input_set_two=s' => \@input_set_two, 'c|core_definition=f' => \$core_definition, 'v|verbose' => \$verbose, 'h|help' => \$help, ); if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } $self->help($help) if(defined($help)); $self->output_filename($output_filename) if ( defined($output_filename) ); $self->action($action) if ( defined($action) ); $self->core_definition( $core_definition / 100 ) if ( defined($core_definition) ); if ( defined($groups_filename) && ( -e $groups_filename ) ) { $self->groups_filename($groups_filename); } if(! (-e $self->groups_filename)) { $self->_error_message("Error: Cant access the groups file: ".$self->groups_filename); } @group_names = split( /,/, join( ',', @group_names ) ); $self->group_names( \@group_names ) if (@group_names); @input_set_one = split( /,/, join( ',', @input_set_one ) ); $self->input_set_one( \@input_set_one ) if (@input_set_one); @input_set_two = split( /,/, join( ',', @input_set_two ) ); $self->input_set_two( \@input_set_two ) if (@input_set_two); if(defined($self->input_set_one) && defined($self->input_set_two) ) { my @all_input_files = (@{ $self->input_set_one },@{ $self->input_set_two }); $self->args(\@all_input_files); } if ( !defined($self->input_set_two) && @{ $self->args } == 0) { $self->_error_message("Error: You need to provide a FASTA file"); } for my $filename ( @{ $self->args } ) { if ( !-e $filename ) { $self->_error_message("Error: Cant access file $filename"); last; } } $self->input_files( $self->args ); } sub run { my ($self) = @_; ( !$self->help ) or die $self->usage_text; if ( defined( $self->_error_message ) ) { print $self->_error_message . "\n"; die $self->usage_text; } my $prepare_input_files = Bio::Roary::PrepareInputFiles->new( input_files => $self->input_files, ); my $analyse_groups_obj = Bio::Roary::AnalyseGroups->new( fasta_files => $prepare_input_files->fasta_files, groups_filename => $self->groups_filename, ); if ( $self->action eq 'union' ) { my $query_groups = Bio::Roary::Output::QueryGroups->new( analyse_groups => $analyse_groups_obj, output_union_filename => $self->output_filename, input_filenames => $prepare_input_files->fasta_files ); $query_groups->groups_union(); } elsif ( $self->action eq 'intersection' ) { my $query_groups = Bio::Roary::Output::QueryGroups->new( analyse_groups => $analyse_groups_obj, output_intersection_filename => $self->output_filename, input_filenames => $prepare_input_files->fasta_files, core_definition => $self->core_definition ); $query_groups->groups_intersection(); } elsif ( $self->action eq 'complement' ) { my $query_groups = Bio::Roary::Output::QueryGroups->new( analyse_groups => $analyse_groups_obj, output_complement_filename => $self->output_filename, input_filenames => $prepare_input_files->fasta_files, core_definition => $self->core_definition ); $query_groups->groups_complement(); } elsif ( $self->action eq 'gene_multifasta' && defined( $self->group_names ) ) { my $group_multi_fastas = Bio::Roary::Output::GroupsMultifastas->new( group_names => $self->group_names, analyse_groups => $analyse_groups_obj, output_filename_base => $self->output_filename ); $group_multi_fastas->create_files(); } elsif($self->action eq 'difference' && defined($self->input_set_one) && defined($self->input_set_two)) { my $difference_between_sets = Bio::Roary::Output::DifferenceBetweenSets->new( analyse_groups => $analyse_groups_obj, input_filenames_sets => [ $prepare_input_files->lookup_fasta_files_from_unknown_input_files($self->input_set_one), $prepare_input_files->lookup_fasta_files_from_unknown_input_files($self->input_set_two) ], ); $difference_between_sets->groups_set_one_unique(); $difference_between_sets->groups_set_two_unique(); $difference_between_sets->groups_in_common(); for my $differences_group_filename(($difference_between_sets->groups_set_one_unique_filename,$difference_between_sets->groups_set_two_unique_filename,$difference_between_sets->groups_in_common_filename)) { $self->create_spreadsheets($differences_group_filename, $prepare_input_files->fasta_files, $self->input_files); } } else { print "Nothing done\n"; } } sub create_spreadsheets { my ($self, $groups_file, $fasta_files, $gff_files) = @_; my $analyse_groups_obj = Bio::Roary::AnalyseGroups->new( fasta_files => $fasta_files, groups_filename => $groups_file, ); my $annotate_groups = Bio::Roary::AnnotateGroups->new( gff_files => $gff_files, output_filename => $groups_file.'_reannotated', groups_filename => $groups_file, ); $annotate_groups->reannotate; my $order_genes_obj = Bio::Roary::OrderGenes->new( analyse_groups_obj => $analyse_groups_obj, gff_files => $gff_files, core_definition => $self->core_definition, pan_graph_filename => 'set_difference_core_accessory_graph.dot', accessory_graph_filename => 'set_difference_accessory_graph.dot', ); my $group_statistics = Bio::Roary::GroupStatistics->new( output_filename => $groups_file.'_statistics.csv', annotate_groups_obj => $annotate_groups, analyse_groups_obj => $analyse_groups_obj, groups_to_contigs => $order_genes_obj->groups_to_contigs ); $group_statistics->create_spreadsheet; } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/Roary.pm000066400000000000000000000360331304207556500210250ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::Roary; # ABSTRACT: Take in FASTA files of proteins and cluster them =head1 SYNOPSIS Take in FASTA files of proteins and cluster them =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary; use Bio::Roary::PrepareInputFiles; use Bio::Roary::QC::Report; use Bio::Roary::ReformatInputGFFs; use Bio::Roary::External::CheckTools; use File::Which; use File::Path qw(make_path); use Cwd qw(abs_path getcwd); use File::Temp; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'fasta_files' => ( is => 'rw', isa => 'ArrayRef', default => sub { [] } ); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'clustered_proteins' ); has 'output_directory' => ( is => 'rw', isa => 'Str', default => '.' ); has '_original_directory' => ( is => 'rw', isa => 'Str', default => '.' ); has 'job_runner' => ( is => 'rw', isa => 'Str', default => 'Local' ); has 'makeblastdb_exec' => ( is => 'rw', isa => 'Str', default => 'makeblastdb' ); has 'blastp_exec' => ( is => 'rw', isa => 'Str', default => 'blastp' ); has 'mcxdeblast_exec' => ( is => 'rw', isa => 'Str', default => 'mcxdeblast' ); has 'mcl_exec' => ( is => 'rw', isa => 'Str', default => 'mcl' ); has 'apply_unknowns_filter' => ( is => 'rw', isa => 'Bool', default => 1 ); has 'cpus' => ( is => 'rw', isa => 'Int', default => 1 ); has 'output_multifasta_files' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'perc_identity' => ( is => 'rw', isa => 'Num', default => 95 ); has 'dont_delete_files' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'dont_create_rplots' => ( is => 'rw', isa => 'Bool', default => 1 ); has 'dont_run_qc' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'dont_split_groups' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'verbose_stats' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); has 'mafft' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'group_limit' => ( is => 'rw', isa => 'Num', default => 50000 ); has 'core_definition' => ( is => 'rw', isa => 'Num', default => 0.99 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'kraken_db' => ( is => 'rw', isa => 'Str', default => '/lustre/scratch118/infgen/pathogen/pathpipe/kraken/minikraken_20140330/' ); has 'run_qc' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_working_directory' => ( is => 'rw', isa => 'File::Temp::Dir', lazy => 1, builder => '_build__working_directory' ); sub _build__working_directory { my ($self) = @_; return File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } sub BUILD { my ($self) = @_; my ( $fasta_files, $verbose, $create_rplots, $group_limit, $dont_run_qc, $max_threads, $dont_delete_files, $dont_split_groups, $perc_identity, $output_filename, $job_runner, $makeblastdb_exec, $mcxdeblast_exec, $mcl_exec, $blastp_exec, $apply_unknowns_filter, $cpus, $output_multifasta_files, $verbose_stats, $translation_table, $run_qc, $core_definition, $help, $kraken_db, $cmd_version, $mafft, $output_directory, $check_dependancies, ); GetOptionsFromArray( $self->args, 'o|output=s' => \$output_filename, 'f|output_directory=s' => \$output_directory, 'j|job_runner=s' => \$job_runner, 'm|makeblastdb_exec=s' => \$makeblastdb_exec, 'b|blastp_exec=s' => \$blastp_exec, 'd|mcxdeblast_exec=s' => \$mcxdeblast_exec, 'c|mcl_exec=s' => \$mcl_exec, 'p|processors=i' => \$cpus, 'u|apply_unknowns_filter=i' => \$apply_unknowns_filter, 'e|output_multifasta_files' => \$output_multifasta_files, 'i|perc_identity=i' => \$perc_identity, 'z|dont_delete_files' => \$dont_delete_files, 's|dont_split_groups' => \$dont_split_groups, 'r|create_rplots' => \$create_rplots, 'y|verbose_stats' => \$verbose_stats, 't|translation_table=i' => \$translation_table, 'g|group_limit=i' => \$group_limit, 'qc|run_qc' => \$run_qc, 'x|dont_run_qc' => \$dont_run_qc, 'cd|core_definition=f' => \$core_definition, 'v|verbose' => \$verbose, 'n|mafft' => \$mafft, 'k|kraken_db=s' => \$kraken_db, 'w|version' => \$cmd_version, 'a|check_dependancies' => \$check_dependancies, 'h|help' => \$help, ); $self->version($cmd_version) if ( defined($cmd_version) ); if ( $self->version ) { print $self->_version() ; return; } print "\nPlease cite Roary if you use any of the results it produces: Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill, \"Roary: Rapid large-scale prokaryote pan genome analysis\", Bioinformatics, 2015 Nov 15;31(22):3691-3693 doi: http://doi.org/10.1093/bioinformatics/btv421 Pubmed: 26198102\n\n"; $self->help($help) if ( defined($help) ); if( $self->help ) { print $self->usage_text; return; } if ($check_dependancies) { my $check_tools = Bio::Roary::External::CheckTools->new(); $check_tools->check_all_tools; $self->logger->error( "Roary version " . $self->_version() ); } if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } if ( @{ $self->args } < 2 ) { $self->logger->error("Error: You need to provide at least 2 files to build a pan genome"); die $self->usage_text; } $self->output_filename($output_filename) if ( defined($output_filename) ); $self->job_runner($job_runner) if ( defined($job_runner) ); $self->makeblastdb_exec($makeblastdb_exec) if ( defined($makeblastdb_exec) ); $self->blastp_exec($blastp_exec) if ( defined($blastp_exec) ); $self->mcxdeblast_exec($mcxdeblast_exec) if ( defined($mcxdeblast_exec) ); $self->mcl_exec($mcl_exec) if ( defined($mcl_exec) ); $self->cpus($cpus) if ( defined($cpus) ); if ( defined($perc_identity) ) { $self->perc_identity($perc_identity); if ( $perc_identity < 50 ) { $self->logger->error( "The percentage identity is too low. Either somethings wrong with your data, like contamination, or your doing something that the software isnt designed to support." ); } } $self->mafft($mafft) if ( defined($mafft) ); $self->apply_unknowns_filter($apply_unknowns_filter) if ( defined($apply_unknowns_filter) ); if ( defined($output_multifasta_files) ) { if ( which('prank') ) { $self->output_multifasta_files($output_multifasta_files); } else { if ( which('mafft') ) { $self->output_multifasta_files($output_multifasta_files); $self->mafft(1); $self->logger->warn("PRANK not found in your PATH so using MAFFT instead to generate multiFASTA alignments."); } else { $self->logger->warn("PRANK (or MAFFT) not found in your PATH so cannot generate multiFASTA alignments, skipping for now."); } } } $self->dont_delete_files($dont_delete_files) if ( defined($dont_delete_files) ); $self->dont_split_groups($dont_split_groups) if ( defined($dont_split_groups) ); $self->dont_create_rplots(0) if ( defined($create_rplots) ); $self->verbose_stats($verbose_stats) if ( defined $verbose_stats ); $self->translation_table($translation_table) if ( defined($translation_table) ); $self->group_limit($group_limit) if ( defined($group_limit) ); $self->kraken_db($kraken_db) if ( defined($kraken_db) ); $self->output_directory($output_directory) if ( defined($output_directory) ); if ( defined $verbose_stats && defined($output_multifasta_files) ) { $self->verbose_stats(0); $self->logger->warn("The verbose stats spreadsheet is not compatible with the core gene alignement so disabling verbose_stats"); } if ( defined($run_qc) ) { if ( which('kraken') && which('kraken-report') ) { $self->run_qc($run_qc); } else { $self->logger->warn("kraken or kraken-report not found in your PATH so cannot run QC, skipping for now."); } } if ( $self->cpus > 1 ) { $self->job_runner('Parallel'); } $self->core_definition( $core_definition / 100 ) if ( defined($core_definition) ); for my $filename ( @{ $self->args } ) { if ( !-e $filename ) { $self->logger->error("Error: Cant access file $filename"); die $self->usage_text; } push( @{ $self->fasta_files }, abs_path($filename) ); } $self->_working_directory( File::Temp->newdir( DIR => getcwd, CLEANUP => 0 ) ) if ( $self->dont_delete_files ); } sub _setup_output_directory { my ($self) = @_; return if ( $self->output_directory eq '.' || $self->output_directory eq '' ); if ( -e $self->output_directory || -d $self->output_directory ) { $self->logger->warn("Output directory name exists already so adding a timestamp to the end"); $self->output_directory( $self->output_directory() . '_' . time() ); if ( -e $self->output_directory || -d $self->output_directory ) { die("Output directory name with time stamp exist so giving up"); } } make_path( $self->output_directory, { error => \my $err } ); if (@$err) { for my $diag (@$err) { my ( $file, $message ) = %$diag; die("Error creating output directory $message"); } } $self->logger->info( "Output directory created: " . $self->output_directory ); $self->_original_directory( getcwd() ); chdir( $self->output_directory ); return $self; } sub run { my ($self) = @_; return if($self->version || $self->help); $self->_setup_output_directory; $self->logger->info("Fixing input GFF files"); my $reformat_input_files = Bio::Roary::ReformatInputGFFs->new( gff_files => $self->fasta_files, logger => $self->logger ); $reformat_input_files->fix_duplicate_gene_ids(); if ( @{ $reformat_input_files->fixed_gff_files } == 0 ) { die( "All input files have been excluded from analysis. Please check you have valid GFF files, with annotation and a FASTA sequence at the end. Better still, reannotate your FASTA file with PROKKA." ); } $self->fasta_files( $reformat_input_files->fixed_gff_files ); $self->logger->info("Extracting proteins from GFF files"); my $prepare_input_files = Bio::Roary::PrepareInputFiles->new( input_files => $self->fasta_files, job_runner => $self->job_runner, apply_unknowns_filter => $self->apply_unknowns_filter, cpus => $self->cpus, translation_table => $self->translation_table, verbose => $self->verbose, working_directory => $self->_working_directory, ); if ( $self->run_qc ) { $self->logger->info("Running Kraken on each input assembly"); my $qc_input_files = Bio::Roary::QC::Report->new( input_files => $self->fasta_files, job_runner => $self->job_runner, cpus => $self->cpus, verbose => $self->verbose, kraken_db => $self->kraken_db ); $qc_input_files->report; } my $pan_genome_obj = Bio::Roary->new( input_files => $self->fasta_files, fasta_files => $prepare_input_files->fasta_files, output_filename => $self->output_filename, job_runner => $self->job_runner, cpus => $self->cpus, makeblastdb_exec => $self->makeblastdb_exec, blastp_exec => $self->blastp_exec, output_multifasta_files => $self->output_multifasta_files, perc_identity => $self->perc_identity, dont_delete_files => $self->dont_delete_files, dont_create_rplots => $self->dont_create_rplots, dont_split_groups => $self->dont_split_groups, verbose_stats => $self->verbose_stats, translation_table => $self->translation_table, group_limit => $self->group_limit, core_definition => $self->core_definition, verbose => $self->verbose, mafft => $self->mafft, ); $pan_genome_obj->run(); chdir( $self->_original_directory ); } sub _version { my ($self) = @_; if ( defined($Bio::Roary::CommandLine::Roary::VERSION) ) { return $Bio::Roary::CommandLine::Roary::VERSION . "\n"; } else { return "x.y.z\n"; } } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm000066400000000000000000000122321304207556500234700ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::RoaryCoreAlignment; # ABSTRACT: Take in the group statistics spreadsheet and the location of the gene multifasta files and create a core alignment. =head1 SYNOPSIS Take in the group statistics spreadsheet and the location of the gene multifasta files and create a core alignment. =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Cwd 'abs_path'; use File::Path qw(remove_tree); use Bio::Roary::ExtractCoreGenesFromSpreadsheet; use Bio::Roary::LookupGeneFiles; use Bio::Roary::MergeMultifastaAlignments; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'multifasta_base_directory' => ( is => 'rw', isa => 'Str', default => 'pan_genome_sequences' ); has 'spreadsheet_filename' => ( is => 'rw', isa => 'Str', default => 'gene_presence_absence.csv' ); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'core_gene_alignment.aln' ); has 'core_definition' => ( is => 'rw', isa => 'Num', default => 0.99 ); has 'dont_delete_files' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_error_message' => ( is => 'rw', isa => 'Str' ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); sub BUILD { my ($self) = @_; my ( $multifasta_base_directory, $spreadsheet_filename, $output_filename, $core_definition,$verbose, $help, $mafft, $dont_delete_files ); GetOptionsFromArray( $self->args, 'm|multifasta_base_directory=s' => \$multifasta_base_directory, 's|spreadsheet_filename=s' => \$spreadsheet_filename, 'o|output_filename=s' => \$output_filename, 'cd|core_definition=f' => \$core_definition, 'z|dont_delete_files' => \$dont_delete_files, 'v|verbose' => \$verbose, 'h|help' => \$help, ); if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } $self->help($help) if(defined($help)); if ( defined($multifasta_base_directory) && ( -d $multifasta_base_directory ) ) { $self->multifasta_base_directory( abs_path($multifasta_base_directory)); } if(! -d $self->multifasta_base_directory ) { $self->_error_message("Error: Cant access the multifasta base directory: ".$self->multifasta_base_directory); } if ( defined($spreadsheet_filename) && ( -e $spreadsheet_filename ) ) { $self->spreadsheet_filename( abs_path($spreadsheet_filename)); } if(! -e $self->spreadsheet_filename ) { $self->_error_message("Error: Cant access the spreadsheet: ".$self->spreadsheet_filename); } $self->output_filename( $output_filename ) if ( defined($output_filename) ); if ( defined($core_definition) ) { if($core_definition > 1) { $self->core_definition( $core_definition/100 ); } else { $self->core_definition( $core_definition ); } } $self->dont_delete_files($dont_delete_files) if ( defined($dont_delete_files) ); } sub run { my ($self) = @_; ( !$self->help ) or die $self->usage_text; if ( defined( $self->_error_message ) ) { print $self->_error_message . "\n"; die $self->usage_text; } $self->logger->info("Extract core genes from spreadsheet"); my $core_genes_obj = Bio::Roary::ExtractCoreGenesFromSpreadsheet->new( spreadsheet => $self->spreadsheet_filename, core_definition => $self->core_definition ); $self->logger->info("Looking up genes in files"); my $gene_files = Bio::Roary::LookupGeneFiles->new( multifasta_directory => $self->multifasta_base_directory, ordered_genes => $core_genes_obj->ordered_core_genes, ); $self->logger->info("Merge multifasta alignments"); my $merge_alignments_obj = Bio::Roary::MergeMultifastaAlignments->new( sample_names => $core_genes_obj->sample_names, multifasta_files => $gene_files->ordered_gene_files(), output_filename => $self->output_filename, sample_names_to_genes => $core_genes_obj->sample_names_to_genes ); $merge_alignments_obj->merge_files; if($self->dont_delete_files == 0) { remove_tree('pan_genome_sequences'); } } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm000066400000000000000000000243201304207556500233730ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::RoaryPostAnalysis; # ABSTRACT: Perform the post analysis on the pan genome =head1 SYNOPSIS Perform the post analysis on the pan genome =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary::PostAnalysis; use File::Find::Rule; use Bio::Roary::External::GeneAlignmentFromNucleotides; use File::Path qw(remove_tree); use Bio::Roary::External::Fasttree; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_error_message' => ( is => 'rw', isa => 'Str' ); has 'fasta_files' => ( is => 'rw', isa => 'Str', default => '_fasta_files' ); has 'input_files' => ( is => 'rw', isa => 'Str', default => '_gff_files'); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'clustered_proteins' ); has 'output_pan_geneome_filename' => ( is => 'rw', isa => 'Str', default => 'pan_genome.fa' ); has 'output_statistics_filename' => ( is => 'rw', isa => 'Str', default => 'gene_presence_absence.csv' ); has 'output_multifasta_files' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'clusters_filename' => ( is => 'rw', isa => 'Str', default => '_clustered.clstr' ); has 'job_runner' => ( is => 'rw', isa => 'Str', default => 'Local' ); has 'cpus' => ( is => 'rw', isa => 'Int', default => 1 ); has 'dont_delete_files' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'dont_create_rplots' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'dont_split_groups' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'verbose_stats' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); has 'group_limit' => ( is => 'rw', isa => 'Num', default => 50000 ); has 'core_definition' => ( is => 'rw', isa => 'Num', default => 0.99 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'mafft' => ( is => 'rw', isa => 'Bool', default => 0 ); sub BUILD { my ($self) = @_; my ( $output_filename, $dont_create_rplots, $dont_delete_files, $dont_split_groups, $output_pan_geneome_filename, $job_runner, $output_statistics_filename, $output_multifasta_files, $clusters_filename, $core_definition, $fasta_files, $input_files, $verbose_stats, $translation_table, $help, $cpus,$group_limit,$verbose,$mafft ); GetOptionsFromArray( $self->args, 'o|output=s' => \$output_filename, 'j|job_runner=s' => \$job_runner, 'm|output_multifasta_files' => \$output_multifasta_files, 'p=s' => \$output_pan_geneome_filename, 's=s' => \$output_statistics_filename, 'c=s' => \$clusters_filename, 'f=s' => \$fasta_files, 'i=s' => \$input_files, 'a|dont_delete_files' => \$dont_delete_files, 'b|dont_create_rplots' => \$dont_create_rplots, 'd|dont_split_groups' => \$dont_split_groups, 'e|verbose_stats' => \$verbose_stats, 'z|processors=i' => \$cpus, 't|translation_table=i' => \$translation_table, 'g|group_limit=i' => \$group_limit, 'cd|core_definition=f' => \$core_definition, 'v|verbose' => \$verbose, 'n|mafft' => \$mafft, 'h|help' => \$help, ); $self->help($help) if(defined($help)); $self->job_runner($job_runner) if ( defined($job_runner) ); $self->fasta_files($fasta_files) if ( defined($fasta_files) ); $self->input_files($input_files) if ( defined($input_files) ); $self->output_filename($output_filename) if ( defined($output_filename) ); $self->output_pan_geneome_filename($output_pan_geneome_filename) if ( defined($output_pan_geneome_filename) ); $self->output_statistics_filename($output_statistics_filename) if ( defined($output_statistics_filename) ); $self->output_multifasta_files($output_multifasta_files) if ( defined($output_multifasta_files) ); $self->clusters_filename($clusters_filename) if ( defined($clusters_filename) ); $self->dont_delete_files($dont_delete_files) if ( defined($dont_delete_files) ); $self->dont_create_rplots($dont_create_rplots) if ( defined($dont_create_rplots) ); $self->dont_split_groups($dont_split_groups) if ( defined($dont_split_groups) ); $self->verbose_stats($verbose_stats) if ( defined($verbose_stats)); $self->translation_table($translation_table) if ( defined($translation_table) ); $self->cpus($cpus) if ( defined($cpus) ); $self->group_limit($group_limit) if ( defined($group_limit) ); $self->core_definition( $core_definition/100 ) if ( defined($core_definition) ); $self->mafft($mafft) if ( defined($mafft) ); if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } } sub run { my ($self) = @_; ( !$self->help ) or die $self->usage_text; if ( defined( $self->_error_message ) ) { print $self->_error_message . "\n"; die $self->usage_text; } my $input_files = $self->_read_file_into_array($self->input_files); my $obj = Bio::Roary::PostAnalysis->new( fasta_files => $self->_read_file_into_array($self->fasta_files) , input_files => $input_files , output_filename => $self->output_filename , output_pan_geneome_filename => $self->output_pan_geneome_filename, output_statistics_filename => $self->output_statistics_filename , output_multifasta_files => $self->output_multifasta_files , clusters_filename => $self->clusters_filename , dont_delete_files => $self->dont_delete_files, dont_create_rplots => $self->dont_create_rplots, dont_split_groups => $self->dont_split_groups, verbose_stats => $self->verbose_stats, group_limit => $self->group_limit, verbose => $self->verbose, cpus => $self->cpus, logger => $self->logger, core_definition => $self->core_definition, ); $obj->run(); if($self->dont_delete_files == 0) { unlink('_inflated_unsplit_mcl_groups'); remove_tree('split_groups'); } if($self->output_multifasta_files == 1) { print "Aligning each cluster\n" if($self->verbose); my $job_runner_to_use = $self->job_runner; if($self->_is_lsf_job_runner_available && $self->job_runner eq "LSF") { $job_runner_to_use = $self->job_runner; } else { $job_runner_to_use = 'Parallel'; } my $output_gene_files = $self->_find_input_files; my $seg = Bio::Roary::External::GeneAlignmentFromNucleotides->new( fasta_files => $output_gene_files, job_runner => $job_runner_to_use, translation_table => $self->translation_table, core_definition => $self->core_definition, cpus => $self->cpus, verbose => $self->verbose, mafft => $self->mafft, dont_delete_files => $self->dont_delete_files, num_input_files => $#{$input_files}, ); $seg->run(); } } sub _is_lsf_job_runner_available { my ($self) = @_; my $rc = eval "require Bio::Roary::JobRunner::LSF; 1;"; if(defined($rc) && $rc == 1) { return 1; } else { return 0; } } sub _find_input_files { my ($self) = @_; my @files = File::Find::Rule->file() ->name( '*.fa' ) ->in('pan_genome_sequences' ); return \@files; } sub _read_file_into_array { my ($self, $filename) = @_; open(my $in_fh, $filename); my @filenames; while(<$in_fh>){ chomp; my $line = $_; push(@filenames, $line); } return \@filenames; } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm000066400000000000000000000077701304207556500245460ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::RoaryReorderSpreadsheet; # ABSTRACT: Take in a tree and a spreadsheet and output a reordered spreadsheet =head1 SYNOPSIS Take in a tree and a spreadsheet and output a reordered spreadsheet =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary::ReorderSpreadsheet; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'tree_file' => ( is => 'rw', isa => 'Str' ); has 'spreadsheet_filename' => ( is => 'rw', isa => 'Str', default => 'gene_presence_absence.csv' ); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'reordered_spreadsheet.csv' ); has 'tree_format' => ( is => 'rw', isa => 'Str', default => 'newick' ); has 'search_strategy' => ( is => 'rw', isa => 'Str', default => 'depth' ); has 'sortby' => ( is => 'rw', isa => 'Str', default => 'height'); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); sub BUILD { my ($self) = @_; my ( $output_filename, $tree_file,$search_strategy, $sortby, $tree_format, $spreadsheet_filename,$verbose, $help ); GetOptionsFromArray( $self->args, 'o|output_filename=s' => \$output_filename, 't|tree_file=s' => \$tree_file, 'f|tree_format=s' => \$tree_format, 's|spreadsheet_filename=s' => \$spreadsheet_filename, 'a|search_strategy=s' => \$search_strategy, 'b|sortby=s' => \$sortby, 'v|verbose' => \$verbose, 'h|help' => \$help, ); if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } $self->help($help) if(defined($help)); $self->output_filename($output_filename) if ( defined($output_filename) ); $self->tree_file($tree_file) if ( defined($tree_file) ); $self->tree_format($tree_format) if ( defined($tree_format) ); $self->spreadsheet_filename($spreadsheet_filename) if ( defined($spreadsheet_filename) ); $self->sortby($sortby) if ( defined($sortby) ); $self->search_strategy($search_strategy) if ( defined($search_strategy) ); } sub run { my ($self) = @_; ( defined($self->spreadsheet_filename) && defined($self->tree_file) && ( -e $self->spreadsheet_filename ) && ( -e $self->tree_file ) && ( !$self->help ) ) or die $self->usage_text; ($self->sortby eq "height" || $self->sortby eq "creation" || $self->sortby eq "alpha" || $self->sortby eq "revalpha") or die $self->usage_text; ($self->search_strategy eq "breadth" || $self->search_strategy eq "depth") or die $self->usage_text; my $obj = Bio::Roary::ReorderSpreadsheet->new( tree_file => $self->tree_file, spreadsheet => $self->spreadsheet_filename, output_filename => $self->output_filename, sortby => $self->sortby, search_strategy => $self->search_strategy ); $obj->reorder_spreadsheet(); } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm000066400000000000000000000057341304207556500252570ustar00rootroot00000000000000undef $VERSION; package Bio::Roary::CommandLine::TransferAnnotationToGroups; # ABSTRACT: Take in a groups file and a set of GFF files and transfer the consensus annotation =head1 SYNOPSIS Take in a groups file and a set of GFF files and transfer the consensus annotation =cut use Moose; use Getopt::Long qw(GetOptionsFromArray); use Bio::Roary::AnnotateGroups; extends 'Bio::Roary::CommandLine::Common'; has 'args' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'script_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'help' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'gff_files' => ( is => 'rw', isa => 'ArrayRef' ); has 'groups_filename' => ( is => 'rw', isa => 'Str' ); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'reannotated_groups' ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_error_message' => ( is => 'rw', isa => 'Str' ); sub BUILD { my ($self) = @_; my ( $gff_files, $output_filename, $groups_filename, @group_names, $action,$verbose, $help ); GetOptionsFromArray( $self->args, 'o|output=s' => \$output_filename, 'g|groups_filename=s' => \$groups_filename, 'v|verbose' => \$verbose, 'h|help' => \$help, ); if ( defined($verbose) ) { $self->verbose($verbose); $self->logger->level(10000); } $self->help($help) if(defined($help)); ( !$self->help ) or die $self->usage_text; if ( @{ $self->args } == 0 ) { $self->_error_message("Error: You need to provide a FASTA file"); } $self->output_filename($output_filename) if ( defined($output_filename) ); if ( defined($groups_filename) && ( -e $groups_filename ) ) { $self->groups_filename($groups_filename); } else { $self->_error_message("Error: Cant access the groups file"); } for my $filename ( @{ $self->args } ) { if ( !-e $filename ) { $self->_error_message("Error: Cant access file $filename"); last; } } $self->gff_files( $self->args ); } sub run { my ($self) = @_; if ( defined( $self->_error_message ) ) { print $self->_error_message . "\n"; die $self->usage_text; } my $obj = Bio::Roary::AnnotateGroups->new( gff_files => $self->gff_files, output_filename => $self->output_filename, groups_filename => $self->groups_filename, ); $obj->reannotate; } sub usage_text { my ($self) = @_; return <meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/ContigsToGeneIDsFromGFF.pm000066400000000000000000000100741304207556500220170ustar00rootroot00000000000000package Bio::Roary::ContigsToGeneIDsFromGFF; # ABSTRACT: Parse a GFF and efficiently and extract ordered gene ids on each contig =head1 SYNOPSIS Parse a GFF and efficiently and extract ordered gene ids on each contig use Bio::Roary::ContigsToGeneIDsFromGFF; my $obj = Bio::Roary::ContigsToGeneIDsFromGFF->new( gff_file => 'abc.gff' ); $obj->contig_to_ids; =cut use Moose; use Bio::Tools::GFF; with 'Bio::Roary::ParseGFFAnnotationRole'; has 'contig_to_ids' => ( is => 'rw', isa => 'HashRef', lazy => 1, builder => '_build_contig_to_ids'); has 'overlapping_hypothetical_protein_ids' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_overlapping_hypothetical_protein_ids'); has '_genes_annotation' => ( is => 'rw', isa => 'ArrayRef', default => sub{[]}); has '_min_nucleotide_overlap_percentage' => ( is => 'ro', isa => 'Int', default => 10); # Manually parse the GFF file because the BioPerl module is too slow sub _build_contig_to_ids { my ($self) = @_; my %contigs_to_ids; my @genes_annotation; open( my $fh, '-|', $self->_gff_fh_input_string ) or die "Couldnt open GFF file"; while(<$fh>) { chomp; my $line = $_; my $id_name; if($line =~/ID=["']?([^;"']+)["']?;?/i) { $id_name= $1; } else { next; } my @annotation_elements = split(/\t/,$line); # Map gene IDs to the contig push(@{$contigs_to_ids{$annotation_elements[0]}}, $id_name); if($line =~/product=["']?([^;,"']+)[,"']?;?/i) { my %gene_data; $gene_data{product} = $1; $gene_data{id_name} = $id_name; if($line =~ /UniProtKB/ || $line =~ /RefSeq/ || $line =~ /protein motif/) { $gene_data{database_annotation_exists} = 1; } else { $gene_data{database_annotation_exists} = 0; } $gene_data{contig} = $annotation_elements[0]; $gene_data{start} = $annotation_elements[1]; $gene_data{end} = $annotation_elements[2]; push(@genes_annotation,\%gene_data); } } close($fh); $self->_genes_annotation(\@genes_annotation); return \%contigs_to_ids; } sub _build_overlapping_hypothetical_protein_ids { my ($self) = @_; $self->contig_to_ids; my %overlapping_protein_ids; #Checking to see if the current feature is hypotheitical and if the next one has annotation for(my $i = 0; $i< (@{$self->_genes_annotation} -1) ; $i++ ) { my $current_feature = $self->_genes_annotation->[$i]; my $next_feature = $self->_genes_annotation->[$i+1]; next if($current_feature->{database_annotation_exists} == 1); next unless($current_feature->{product} =~ /hypothetical/i); next unless($next_feature->{database_annotation_exists} == 1); my $start_coord = $current_feature->{start} ; my $end_coord = $current_feature->{end} ; my $comparison_start_coord =$next_feature->{start} ; my $comparison_end_coord =$next_feature->{end} ; if($comparison_start_coord < $end_coord && $comparison_end_coord > $start_coord ) { my $percent_overlap = $self->_percent_overlap($start_coord, $end_coord , $comparison_start_coord,$comparison_end_coord); if($percent_overlap >= $self->_min_nucleotide_overlap_percentage) { $overlapping_protein_ids{$current_feature->{id_name}}++; } } } return \%overlapping_protein_ids; } sub _percent_overlap { my ($self, $start_coord, $end_coord , $comparison_start_coord,$comparison_end_coord) = @_; my $size_of_hypothetical_gene = $end_coord - $start_coord; my $lower_bound = $start_coord; if($comparison_start_coord > $start_coord) { $lower_bound = $comparison_start_coord; } my $upper_bound = $end_coord; if($comparison_end_coord < $end_coord ) { $upper_bound = $comparison_end_coord; } return (($upper_bound-$lower_bound)*100) / $size_of_hypothetical_gene; } sub _build__awk_filter { my ($self) = @_; return 'awk \'BEGIN {FS="\t"};{ if ($3 ~/' . $self->_tags_to_filter . '/) print $1"\t"$4"\t"$5"\t"$9;}\' '; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Exceptions.pm000066400000000000000000000005771304207556500176700ustar00rootroot00000000000000package Bio::Roary::Exceptions; # ABSTRACT: Exceptions for input data =head1 SYNOPSIS Exceptions for input data =cut use strict; use warnings; use Exception::Class ( 'Bio::Roary::Exceptions::FileNotFound' => { description => 'Couldnt open the file' }, 'Bio::Roary::Exceptions::CouldntWriteToFile' => { description => 'Couldnt open the file for writing' }, ); 1; Roary-3.8.0/lib/Bio/Roary/External/000077500000000000000000000000001304207556500167625ustar00rootroot00000000000000Roary-3.8.0/lib/Bio/Roary/External/Blastp.pm000066400000000000000000000036231304207556500205510ustar00rootroot00000000000000package Bio::Roary::External::Blastp; # ABSTRACT: Wrapper around NCBIs blastp command =head1 SYNOPSIS Wrapper around NCBIs blastp command use Bio::Roary::External::Blastp; my $blast_database= Bio::Roary::External::Blastp->new( fasta_file => 'contigs.fa', blast_database => 'db', exec => 'blastp', output_file => 'results.out' ); $blast_database->run(); =method result_file Returns the path to the results file =cut use Moose; with 'Bio::Roary::JobRunner::Role'; has 'fasta_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'blast_database' => ( is => 'ro', isa => 'Str', required => 1 ); has 'exec' => ( is => 'ro', isa => 'Str', default => 'blastp' ); has '_evalue' => ( is => 'ro', isa => 'Num', default => 1E-6 ); has '_num_threads' => ( is => 'ro', isa => 'Int', default => 1 ); has '_max_target_seqs' => ( is => 'ro', isa => 'Int', default => 2000 ); has '_logging' => ( is => 'ro', isa => 'Str', default => '2> /dev/null' ); has 'output_file' => ( is => 'ro', isa => 'Str', default => 'results.out' ); has 'perc_identity' => ( is => 'ro', isa => 'Num', default => 98 ); sub _command_to_run { my ($self) = @_; return join( " ", ( $self->exec, '-query', $self->fasta_file, '-db', $self->blast_database, '-evalue', $self->_evalue, '-num_threads', $self->_num_threads, '-outfmt 6', '-max_target_seqs', $self->_max_target_seqs, ' | awk \'{ if ($3 > '.$self->perc_identity.') print $0;}\'', $self->_logging, '1> ', $self->output_file, ) ); } sub run { my ($self) = @_; $self->logger->info( "Running command: " . $self->_command_to_run() ); system( $self->_command_to_run ); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/Cdhit.pm000066400000000000000000000063401304207556500203560ustar00rootroot00000000000000package Bio::Roary::External::Cdhit; # ABSTRACT: Wrapper to run cd-hit =head1 SYNOPSIS Wrapper to run cd-hit use Bio::Roary::External::Cdhit; my $obj = Bio::Roary::External::Cdhit->new( input_file => 'abc.fa', exec => 'cd-hit', output_base => 'efg', ); $obj->run; =cut use Moose; with 'Bio::Roary::JobRunner::Role'; has 'input_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_base' => ( is => 'ro', isa => 'Str', default => 'output' ); has 'exec' => ( is => 'ro', isa => 'Str', default => 'cd-hit' ); has 'alt_exec' => ( is => 'ro', isa => 'Str', default => 'cdhit' ); has '_max_available_memory_in_mb' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build__max_available_memory_in_mb' ); has '_use_most_similar_clustering' => ( is => 'ro', isa => 'Bool', default => 1 ); has '_length_difference_cutoff' => ( is => 'ro', isa => 'Num', default => 1 ); has '_sequence_identity_threshold' => ( is => 'ro', isa => 'Num', default => 1 ); has '_description_length' => ( is => 'ro', isa => 'Int', default => 256 ); has '_logging' => ( is => 'ro', isa => 'Str', default => '> /dev/null 2>&1' ); has '_max_cpus' => ( is => 'ro', isa => 'Int', default => 40 ); # Overload Role has 'memory_in_mb' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build_memory_in_mb' ); sub _build_memory_in_mb { my ($self) = @_; my $filename = $self->input_file; my $memory_required = 2000; if(-e $filename) { $memory_required = -s $filename; # Convert to mb $memory_required = int($memory_required/1000000); # Triple memory for worst case senario $memory_required *= 5; $memory_required = 2000 if($memory_required < 2000); } return $memory_required; } sub _build__max_available_memory_in_mb { my ($self) = @_; my $memory_to_cdhit = int($self->memory_in_mb *0.9); return $memory_to_cdhit; } sub clusters_filename { my ($self) = @_; return join('.',($self->output_base,'clstr')); } sub _command_to_run { my ($self) = @_; my $executable = $self->_find_exe([$self->exec, $self->alt_exec]); my $cpus = ($self->cpus > $self->_max_cpus) ? $self->_max_cpus : $self->cpus; return join( ' ', ( $executable, '-i', $self->input_file, '-o', $self->output_base, '-T', $cpus, '-M', $self->_max_available_memory_in_mb, '-g', $self->_use_most_similar_clustering, '-s', $self->_length_difference_cutoff, '-d', $self->_description_length ,'-c', $self->_sequence_identity_threshold, $self->_logging ) ); } sub run { my ($self) = @_; my @commands_to_run; push(@commands_to_run, $self->_command_to_run() ); $self->logger->info( "Running command: " . $self->_command_to_run() ); my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, cpus => $self->cpus ); $job_runner_obj->run(); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/CheckTools.pm000066400000000000000000000130031304207556500213530ustar00rootroot00000000000000package Bio::Roary::External::CheckTools; # ABSTRACT: Check external executables are available and are the correct version =head1 SYNOPSIS Functionality borrowed from PROKKA by Torsten Seemann. Check external executables are available and are the correct version use Bio::Roary::External::CheckTools; my $obj = Bio::Roary::External::CheckTools->new(); $obj->check_all_tools; =cut use Moose; use File::Spec; use Log::Log4perl qw(:easy); has 'logger' => ( is => 'ro', lazy => 1, builder => '_build_logger' ); sub _build_logger { my ($self) = @_; Log::Log4perl->easy_init($DEBUG); my $logger = get_logger(); return $logger; } my $BIDEC = '(\d+\.\d+)'; # pattern of NN.NN for versions that can be compared my %tools = ( 'parallel' => { GETVER => "parallel --version | grep '^GNU parallel 2'", REGEXP => qr/GNU parallel (\d+)/, MINVER => "20130422", NEEDED => 1, }, 'blastp' => { GETVER => "blastp -version", REGEXP => qr/blastp:\s+(\d+\.\d+\.\d+)/, NEEDED => 1, }, 'makeblastdb' => { GETVER => "makeblastdb -version", REGEXP => qr/makeblastdb:\s+(\d+\.\d+\.\d+)/, NEEDED => 1, }, 'mcl' => { GETVER => "mcl --version | head -n 1", REGEXP => qr/(\d+\-\d+)/, NEEDED => 1, }, 'bedtools' => { GETVER => "bedtools --version", REGEXP => qr/bedtools v($BIDEC)/, MINVER => "2.1", NEEDED => 1, }, 'mafft' => { GETVER => "mafft --version < /dev/null 2>&1", REGEXP => qr/v($BIDEC) /, NEEDED => 1, }, 'kraken' => { GETVER => "kraken --version | head -n 1", REGEXP => qr/Kraken version kraken-(\d+\.\d+\.\d+.*)/, NEEDED => 0, }, 'kraken-report' => { GETVER => "kraken-report --version | head -n 1", REGEXP => qr/Kraken version kraken-(\d+\.\d+\.\d+.*)/, NEEDED => 0, }, 'Rscript' => { GETVER => "Rscript --version 2>&1 | head -n 1", REGEXP => qr/R scripting front-end version ($BIDEC)/, MINVER => "3", NEEDED => 0, }, # prank version also performs an update check so cant use it 'prank' => { NEEDED => 1 }, # now just the standard unix tools we need 'grep' => { NEEDED => 1 }, 'sed' => { NEEDED => 1 }, 'awk' => { NEEDED => 1 }, ); my %cdhit_tools = ( 'cdhit' => { GETVER => "cdhit -h | grep 'CD-HIT version'", REGEXP => qr/version ($BIDEC) /, MINVER => "4.6", }, 'cd-hit' => { GETVER => "cd-hit -h | grep 'CD-HIT version'", REGEXP => qr/version ($BIDEC) /, MINVER => "4.6", } ); my %fasttree_tools = ( 'fasttree' => { GETVER => "fasttree 2>&1 | head -n 1", REGEXP => qr/Usage for FastTree version ($BIDEC)/, }, 'FastTree' => { GETVER => "FastTree 2>&1 | head -n 1", REGEXP => qr/Usage for FastTree version ($BIDEC)/, } ); sub which_tool_exec { my ( $self, $alt_tools ) = @_; for my $toolname ( sort keys %{$alt_tools} ) { my $fp = $self->find_exe($toolname); return $toolname if $fp; } $self->logger->error( "Required tool missing. Can't find one of " . join( '/', keys %{$alt_tools} ) . " in your \$PATH." ); return undef; } sub check_tool { my ( $self, $toolname ) = @_; my $t = $tools{$toolname}; my $fp = $self->find_exe($toolname); $self->logger->error("ERROR: Can't find required '$toolname' in your \$PATH") if !$fp and $t->{NEEDED}; $self->logger->error("Optional tool '$toolname' not found in your \$PATH") if !$fp and !$t->{NEEDED}; if ($fp) { $t->{HAVE} = $fp; $self->logger->warn("Looking for '$toolname' - found $fp"); if ( $t->{GETVER} ) { my ($s) = qx($t->{GETVER}); if ( defined $s ) { $s =~ $t->{REGEXP}; $t->{VERSION} = $1 if defined $1; $self->logger->warn("Determined $toolname version is $t->{VERSION}"); if ( defined $t->{MINVER} and $t->{VERSION} < $t->{MINVER} ) { $self->logger->error("Roary needs $toolname $t->{MINVER} or higher. Please upgrade and try again."); } if ( defined $t->{MAXVER} and $t->{VERSION} > $t->{MAXVER} ) { $self->logger->error( "Roary needs a version of $toolname between $t->{MINVER} and $t->{MAXVER}. Please downgrade and try again."); } } else { $self->logger->error( "Could not determine version of $toolname - please install version ", $t->{MINVER}, " or higher" ) ; # FIXME: or less <= MAXVER if given } } } } sub check_all_tools { my ($self) = @_; $ENV{"GREP_OPTIONS"} = ''; # --colour => version grep fails (Issue #117) for my $toolname ( sort keys %tools ) { $self->check_tool($toolname); } my $cdhit = $self->which_tool_exec( \%cdhit_tools ); if ($cdhit) { $tools{$cdhit} = $cdhit_tools{$cdhit}; $self->check_tool($cdhit); } my $fasttree = $self->which_tool_exec( \%fasttree_tools ); if ($fasttree) { $tools{$fasttree} = $fasttree_tools{$fasttree}; $self->check_tool($fasttree); } return $self; } sub find_exe { my ( $self, $bin ) = @_; for my $dir ( File::Spec->path ) { my $exe = File::Spec->catfile( $dir, $bin ); return $exe if -x $exe; } return; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/Fasttree.pm000066400000000000000000000037331304207556500211030ustar00rootroot00000000000000package Bio::Roary::External::Fasttree; # ABSTRACT: Wrapper to run Fasttree =head1 SYNOPSIS Wrapper to run cd-hit use Bio::Roary::External::Fasttree; my $obj = Bio::Roary::External::Fasttree->new( input_file => 'abc.fa', exec => 'Fasttree', output_base => 'efg', ); $obj->run; =cut use Moose; with 'Bio::Roary::JobRunner::Role'; has 'input_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_file' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_output_file' ); has 'exec' => ( is => 'ro', isa => 'Str', default => 'FastTree' ); has 'alt_exec' => ( is => 'ro', isa => 'Str', default => 'fasttree' ); has '_logging' => ( is => 'ro', isa => 'Str', default => '2> /dev/null' ); sub _build_output_file { my ($self) = @_; return $self->input_file.".newick"; } sub _command_to_run { my ($self) = @_; my $executable = $self->_find_exe([$self->exec, $self->alt_exec]); my $logging_str = ""; $logging_str = $self->_logging if(! $self->verbose); return join( ' ', ($executable, '-fastest', '-nt', $self->input_file, '>', $self->output_file, $logging_str) ); } sub run { my ($self) = @_; my @commands_to_run; if(!defined($self->input_file) || ! ( -e $self->input_file)) { $self->logger->error( "The input file is missing so not creating a tree" ); return 1; } if(-s $self->input_file < 5) { $self->logger->info( "The input file is too small so not creating a tree" ); return 1; } push(@commands_to_run, $self->_command_to_run() ); $self->logger->info( "Running command: " . $self->_command_to_run() ); my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, cpus => $self->cpus ); $job_runner_obj->run(); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/GeneAlignmentFromNucleotides.pm000066400000000000000000000104631304207556500250640ustar00rootroot00000000000000package Bio::Roary::External::GeneAlignmentFromNucleotides; # ABSTRACT: Take in multi-FASTA files of nucleotides and align each file with PRANK or MAFFT =head1 SYNOPSIS Take in multi-FASTA files of nucleotides and align each file with PRANK or MAFFT use Bio::Roary::External::GeneAlignmentFromNucleotides; my $seg = Bio::Roary::External::GeneAlignmentFromNucleotides->new( fasta_files => [], ); $seg->run(); =method output_file Returns the path to the results file =cut use Moose; with 'Bio::Roary::JobRunner::Role'; has 'fasta_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'exec' => ( is => 'ro', isa => 'Str', default => 'protein_alignment_from_nucleotides' ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); has 'core_definition' => ( is => 'ro', isa => 'Num', default => 1 ); has 'mafft' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'dont_delete_files' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'num_input_files' => ( is => 'ro', isa => 'Int', required => 1); # Overload Role` has 'memory_in_mb' => ( is => 'rw', isa => 'Int', lazy => 1, builder => '_build_memory_in_mb' ); has '_min_memory_in_mb' => ( is => 'ro', isa => 'Int', default => 1500 ); has '_max_memory_in_mb' => ( is => 'ro', isa => 'Int', default => 60000 ); has '_queue' => ( is => 'rw', isa => 'Str', default => 'normal' ); has '_files_per_chunk' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build__files_per_chunk' ); has '_core_alignment_cmd' => ( is => 'rw', isa => 'Str', lazy_build => 1 ); has '_dependancy_memory_in_mb' => ( is => 'ro', isa => 'Int', default => 15000 ); sub _build__files_per_chunk { my ($self) = @_; return 1; } sub _build_memory_in_mb { my ($self) = @_; my $largest_file_size = 1; for my $file (@{$self->fasta_files}) { my $file_size = -s $file; if($file_size > $largest_file_size) { $largest_file_size = $file_size; } } my $approx_sequence_length_of_largest_file = $largest_file_size/ $self->num_input_files; my $memory_required = int((($approx_sequence_length_of_largest_file*$approx_sequence_length_of_largest_file)/1000000)*2 + $self->_min_memory_in_mb); $memory_required = $self->_max_memory_in_mb if($memory_required > $self->_max_memory_in_mb); return $memory_required; } sub _command_to_run { my ( $self, $fasta_files) = @_; my $verbose = ""; if($self->verbose) { $verbose = ' -v '; } my $mafft_str = ""; $mafft_str = ' --mafft ' if($self->mafft); return $self->exec." ".$verbose.$mafft_str.join( " ", @{$fasta_files} ); } sub _build__core_alignment_cmd { my ( $self ) = @_; my $core_cmd = "pan_genome_core_alignment"; $core_cmd .= " -cd " . ($self->core_definition*100) if ( defined $self->core_definition ); $core_cmd .= " --dont_delete_files " if ( defined $self->dont_delete_files && $self->dont_delete_files == 1 ); return $core_cmd; } sub run { my ($self) = @_; my @commands_to_run; my @files_chunk; for my $fasta_file ( @{ $self->fasta_files } ) { push(@files_chunk,$fasta_file); if(@files_chunk == $self->_files_per_chunk ) { push(@commands_to_run, $self->_command_to_run(\@files_chunk)); $self->logger->info( "Running command: " . $self->_command_to_run(\@files_chunk) ); @files_chunk = (); } } if(@files_chunk > 0) { push(@commands_to_run, $self->_command_to_run(\@files_chunk)); $self->logger->info( "Running command: " . $self->_command_to_run(\@files_chunk) ); } my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, dont_wait => 1, cpus => $self->cpus ); $job_runner_obj->run(); $job_runner_obj->memory_in_mb($self->_dependancy_memory_in_mb); $self->logger->info( "Running command: " . $self->_core_alignment_cmd() ); $job_runner_obj->submit_dependancy_job($self->_core_alignment_cmd); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/IterativeCdhit.pm000066400000000000000000000052011304207556500222260ustar00rootroot00000000000000package Bio::Roary::External::IterativeCdhit; # ABSTRACT: Iteratively run CDhit =head1 SYNOPSIS Iteratively run CDhit use Bio::Roary::External::IterativeCdhit; my $seg= Bio::Roary::External::IterativeCdhit->new( output_cd_hit_filename => '', output_combined_filename => '', number_of_input_files => 10, output_filtered_clustered_fasta => '', ); $seg->run(); =cut use Moose; with 'Bio::Roary::JobRunner::Role'; has 'output_cd_hit_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_combined_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'number_of_input_files' => ( is => 'ro', isa => 'Int', required => 1 ); has 'output_filtered_clustered_fasta' => ( is => 'ro', isa => 'Str', required => 1 ); has 'exec' => ( is => 'ro', isa => 'Str', default => 'iterative_cdhit' ); has '_max_cpus' => ( is => 'ro', isa => 'Int', default => 40 ); # Overload Role has 'memory_in_mb' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build_memory_in_mb' ); sub _build_memory_in_mb { my ($self) = @_; my $filename = $self->output_combined_filename; my $memory_required = 2000; if ( -e $filename ) { $memory_required = -s $filename; # Convert to mb $memory_required = int( $memory_required / 1000000 ); # Pentuple memory for worst case senario $memory_required *= 5; $memory_required = 2000 if ( $memory_required < 2000 ); } return $memory_required; } sub _build__max_available_memory_in_mb { my ($self) = @_; my $memory_to_cdhit = int( $self->memory_in_mb * 0.9 ); return $memory_to_cdhit; } sub _command_to_run { my ($self) = @_; my $cpus = ($self->cpus > $self->_max_cpus) ? $self->_max_cpus : $self->cpus; return join( ' ', ( $self->exec, '-c', $self->output_cd_hit_filename, '-m', $self->output_combined_filename, '-n', $self->number_of_input_files, '--cpus', $cpus, '-f', $self->output_filtered_clustered_fasta ) ); } sub run { my ($self) = @_; my @commands_to_run; push( @commands_to_run, $self->_command_to_run ); $self->logger->info( "Running command: " . $self->_command_to_run() ); my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, cpus => $self->cpus ); $job_runner_obj->run(); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/Mafft.pm000066400000000000000000000032741304207556500203630ustar00rootroot00000000000000package Bio::Roary::External::Mafft; # ABSTRACT: Wrapper to run mafft =head1 SYNOPSIS Wrapper to run mafft use Bio::Roary::External::Mafft; my $mafft_obj = Bio::Roary::External::Mafft->new( input_filename => $fasta_file, output_filename => $fasta_file.'.aln', job_runner => 'Local' ); $mafft_obj->run(); =cut use Moose; use File::Spec; with 'Bio::Roary::JobRunner::Role'; has 'input_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'output' ); has 'exec' => ( is => 'ro', isa => 'Str', default => 'mafft' ); # Overload Role has 'memory_in_mb' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build_memory_in_mb' ); sub _build_memory_in_mb { my ($self) = @_; my $memory_required = 2000; return $memory_required; } sub _command_to_run { my ($self) = @_; if(! -e $self->input_filename) { $self->logger->error( "Input file to MAFFT missing: " . $self->input_filename ); } return join( ' ', ( $self->exec, '--auto', '--quiet', $self->input_filename, '>', $self->output_filename ) ); } sub run { my ($self) = @_; my @commands_to_run; push( @commands_to_run, $self->_command_to_run() ); $self->logger->info( "Running command: " . $self->_command_to_run() ); my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, cpus => $self->cpus ); $job_runner_obj->run(); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/Makeblastdb.pm000066400000000000000000000040571304207556500215370ustar00rootroot00000000000000package Bio::Roary::External::Makeblastdb; # ABSTRACT: Wrapper around NCBIs makeblastdb command =head1 SYNOPSIS Take in a fasta file and create a temporary blast database. use Bio::Roary::External::Makeblastdb; my $blast_database= Bio::Roary::External::Makeblastdb->new( fasta_file => 'contigs.fa', exec => 'makeblastdb' ); $blast_database->run(); =method output_database Returns the path to the temporary blast database files =cut use Moose; use File::Temp; use Cwd; with 'Bio::Roary::JobRunner::Role'; has 'fasta_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'exec' => ( is => 'ro', isa => 'Str', default => 'makeblastdb' ); has '_working_directory' => ( is => 'ro', isa => 'File::Temp::Dir', default => sub { File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } ); has '_dbtype' => ( is => 'ro', isa => 'Str', default => 'prot' ); has '_logfile' => ( is => 'ro', isa => 'Str', default => '/dev/null' ); has 'output_database' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_output_database' ); # Overload Role has 'memory_in_mb' => ( is => 'ro', isa => 'Int', default => 4000); sub _build_output_database { my ($self) = @_; return join( '/', ( $self->_working_directory->dirname(), 'output_contigs' ) ); } sub _command_to_run { my ($self) = @_; return join( " ", ( $self->exec, '-in', $self->fasta_file, '-dbtype', $self->_dbtype, '-out', $self->output_database, '-logfile', $self->_logfile ) ); } sub run { my ($self) = @_; my @commands_to_run; push(@commands_to_run, $self->_command_to_run ); $self->logger->info( "Running command: " . $self->_command_to_run() ); my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, cpus => $self->cpus ); $job_runner_obj->run(); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/Mcl.pm000066400000000000000000000057701304207556500200440ustar00rootroot00000000000000package Bio::Roary::External::Mcl; # ABSTRACT: Wrapper around MCL which takes in blast results and outputs clustered results =head1 SYNOPSIS Wrapper around MCL which takes in blast results and outputs clustered results use Bio::Roary::External::Mcl; my $mcl= Bio::Roary::External::Mcl->new( blast_results => 'db', mcxdeblast_exec => 'mcxdeblast', mcl_exec => 'mcl', output_file => 'output.groups' ); $mcl->run(); =cut use Moose; use File::Which; with 'Bio::Roary::JobRunner::Role'; has 'blast_results' => ( is => 'ro', isa => 'Str', required => 1 ); has 'mcxdeblast_exec' => ( is => 'ro', isa => 'Str', default => 'mcxdeblast' ); has '_full_mcxdeblast_exec' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__full_mcxdeblast_exec'); has 'mcl_exec' => ( is => 'ro', isa => 'Str', default => 'mcl' ); has 'output_file' => ( is => 'ro', isa => 'Str', default => 'output_groups' ); has '_score' => ( is => 'ro', isa => 'Str', default => 'r' ); has '_inflation_value' => ( is => 'ro', isa => 'Num', default => 1.5 ); has '_logging' => ( is => 'ro', isa => 'Str', default => '> /dev/null 2>&1' ); has 'memory_in_mb' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build_memory_in_mb' ); sub _build_memory_in_mb { my ($self) = @_; # Todo: implement this equation for memory estimation if this hardcoded value proves too unstable. # http://micans.org/mcl/man/mcl.html#opt-how-much-ram my $filename = $self->blast_results; my $memory_required = 2000; if(-e $filename) { $memory_required = -s $filename; # Convert to mb $memory_required = int($memory_required/1000000); # increase memory for worst case senario $memory_required *= 3; $memory_required += 2000; } return $memory_required; } sub _build__full_mcxdeblast_exec { my ($self) = @_; if(-e $self->mcxdeblast_exec) { return $self->mcxdeblast_exec; } my $full_exec = which($self->mcxdeblast_exec); if(! defined($full_exec)) { $self->logger->error("Cannot find the mcxdeblast executable, please ensure its in your PATH") ; exit(); } return "perl $full_exec"; } sub _command_to_run { my ($self) = @_; return join( " ", ( $self->_full_mcxdeblast_exec, '-m9', '--score='.$self->_score, '--line-mode=abc', $self->blast_results, '2> /dev/null', '|', $self->mcl_exec, '-', '--abc', '-I', $self->_inflation_value, '-o', $self->output_file, $self->_logging ) ); } sub run { my ($self) = @_; my @commands_to_run; push(@commands_to_run, $self->_command_to_run ); $self->logger->info( "Running command: " . $self->_command_to_run() ); my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, cpus => $self->cpus ); $job_runner_obj->run(); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/PostAnalysis.pm000066400000000000000000000142121304207556500217510ustar00rootroot00000000000000package Bio::Roary::External::PostAnalysis; # ABSTRACT: Perform the post analysis =head1 SYNOPSIS Perform the post analysis use Bio::Roary::External::PostAnalysis; my $seg= Bio::Roary::External::PostAnalysis->new( fasta_file => 'contigs.fa', ); $seg->run(); =cut use Moose; use Cwd qw(getcwd); with 'Bio::Roary::JobRunner::Role'; has 'input_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'exec' => ( is => 'ro', isa => 'Str', default => 'pan_genome_post_analysis' ); has 'fasta_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_pan_geneome_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_statistics_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'clusters_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_multifasta_files' => ( is => 'ro', isa => 'Bool', required => 1 ); has 'dont_delete_files' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'dont_create_rplots' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'dont_split_groups' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'verbose_stats' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); has 'group_limit' => ( is => 'rw', isa => 'Num', default => 50000 ); has 'core_definition' => ( is => 'ro', isa => 'Num', default => 1.0 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'mafft' => ( is => 'ro', isa => 'Bool', default => 0 ); has '_working_directory' => ( is => 'ro', isa => 'File::Temp::Dir', default => sub { File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } ); has '_gff_fofn' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__gff_fofn' ); has '_fasta_fofn' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__fasta_fofn' ); # Overload Role has 'memory_in_mb' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build_memory_in_mb' ); has '_minimum_memory_mb' => ( is => 'ro', isa => 'Int', default => 4000 ); has '_memory_per_sample_mb' => ( is => 'ro', isa => 'Int', default => 30 ); has '_queue' => ( is => 'rw', isa => 'Str', lazy => 1, builder => '_build__queue'); sub _build__queue { my ($self) = @_; my $queue = 'normal'; my $num_samples = @{ $self->input_files }; if($num_samples > 200) { $queue = 'long'; } elsif($num_samples > 600) { $queue = 'basement'; } return $queue; } sub _build_memory_in_mb { my ($self) = @_; my $num_samples = @{ $self->input_files }; my $memory_required = $num_samples * $self->_memory_per_sample_mb; if ( $memory_required < $self->_minimum_memory_mb ) { $memory_required = $self->_minimum_memory_mb; } return $memory_required; } sub _build__gff_fofn { my ($self) = @_; return join('/', ($self->_working_directory, '/_gff_files')); } sub _build__fasta_fofn { my ($self) = @_; return join('/', ($self->_working_directory, '/_fasta_files')); } sub _output_gff_files { my ($self) = @_; open(my $out_fh, '>', $self->_gff_fofn); for my $filename (@{$self->input_files}) { print {$out_fh} $filename."\n"; } close($out_fh); } sub _output_fasta_files { my ($self) = @_; open(my $out_fh, '>', $self->_fasta_fofn); for my $filename (@{$self->fasta_files}) { print {$out_fh} $filename."\n"; } close($out_fh); } sub _command_to_run { my ($self) = @_; $self->_output_fasta_files; $self->_output_gff_files; my $output_multifasta_files_flag = ''; $output_multifasta_files_flag = '--output_multifasta_files' if(defined($self->output_multifasta_files) && $self->output_multifasta_files == 1); my $dont_delete_files_flag = ''; $dont_delete_files_flag = '--dont_delete_files' if(defined($self->dont_delete_files) && $self->dont_delete_files == 1); my $dont_create_rplots_flag = ''; $dont_create_rplots_flag = '--dont_create_rplots' if(defined($self->dont_create_rplots) && $self->dont_create_rplots == 1); my $dont_split_groups_flag = ''; $dont_split_groups_flag = '--dont_split_groups' if ( defined $self->dont_split_groups && $self->dont_split_groups == 1 ); my $verbose_stats_flag = ''; $verbose_stats_flag = '--verbose_stats' if ( defined($self->verbose_stats) && $self->verbose_stats == 1 ); my $mafft_flag = ''; $mafft_flag = '--mafft' if ( defined($self->mafft) && $self->mafft == 1 ); my $verbose_flag = ''; $verbose_flag = '-v' if ( defined($self->verbose) && $self->verbose == 1 ); return join( " ", ( $self->exec, '-o', $self->output_filename, '-p', $self->output_pan_geneome_filename, '-s', $self->output_statistics_filename, '-c', $self->clusters_filename, $output_multifasta_files_flag, '-i', $self->_gff_fofn, '-f', $self->_fasta_fofn, '-t', $self->translation_table, $dont_delete_files_flag, $dont_create_rplots_flag, $dont_split_groups_flag, $verbose_stats_flag, $verbose_flag, $mafft_flag, '-j', $self->job_runner, '--processors', $self->cpus, '--group_limit', $self->group_limit, '-cd', ($self->core_definition*100) ) ); } sub run { my ($self) = @_; my @commands_to_run; push( @commands_to_run, $self->_command_to_run ); $self->logger->info( "Running command: " . $self->_command_to_run() ); my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, dont_wait => $self->dont_wait, cpus => $self->cpus ); $job_runner_obj->run(); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/External/Prank.pm000066400000000000000000000035141304207556500203760ustar00rootroot00000000000000package Bio::Roary::External::Prank; # ABSTRACT: Wrapper to run prank =head1 SYNOPSIS Wrapper to run cd-hit use Bio::Roary::External::Prank; my $prank_obj = Bio::Roary::External::Prank->new( input_filename => $fasta_file, output_filename => $fasta_file.'.aln', job_runner => 'Local' ); $prank_obj->run(); =cut use Moose; use File::Spec; with 'Bio::Roary::JobRunner::Role'; has 'input_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'output' ); has 'exec' => ( is => 'ro', isa => 'Str', default => 'prank' ); # Overload Role has 'memory_in_mb' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build_memory_in_mb' ); sub _build_memory_in_mb { my ($self) = @_; my $memory_required = 2000; return $memory_required; } sub _command_to_run { my ($self) = @_; if(! -e $self->input_filename) { $self->logger->error( "Input file to PRANK missing: " . $self->input_filename ); } return join( ' ', ( $self->exec, "-d=" . $self->input_filename, "-o=" . $self->output_filename, '-codon', '-F', '-quiet', '-once', '> /dev/null 2>&1', '&&', 'mv', $self->output_filename . '*.fas', $self->output_filename ) ); } sub run { my ($self) = @_; my @commands_to_run; push( @commands_to_run, $self->_command_to_run() ); $self->logger->info( "Running command: " . $self->_command_to_run() ); my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, cpus => $self->cpus ); $job_runner_obj->run(); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm000066400000000000000000000134111304207556500237570ustar00rootroot00000000000000package Bio::Roary::ExtractCoreGenesFromSpreadsheet; # ABSTRACT: Take in a spreadsheet produced by the pipeline and identify the core genes. =head1 SYNOPSIS Take in a spreadsheet produced by the pipeline and identify the core genes. use Bio::Roary::ExtractCoreGenesFromSpreadsheet; my $obj = Bio::Roary::ExtractCoreGenesFromSpreadsheet->new( spreadsheet => 'group_statistics.csv', ); $obj->ordered_core_genes(); =cut use Moose; use Text::CSV; use Bio::Roary::GroupStatistics; use POSIX; has 'spreadsheet' => ( is => 'ro', isa => 'Str', required => 1 ); has '_csv_parser' => ( is => 'ro', isa => 'Text::CSV',lazy => 1, builder => '_build__csv_parser' ); has '_input_spreadsheet_fh' => ( is => 'ro', lazy => 1, builder => '_build__input_spreadsheet_fh' ); has 'ordered_core_genes' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build_ordered_core_genes' ); has 'core_definition' => ( is => 'ro', isa => 'Num', default => 1 ); has 'sample_names' => ( is => 'rw', isa => 'ArrayRef', default => sub {[]} ); has 'sample_names_to_genes' => ( is => 'rw', isa => 'HashRef', default => sub {{}} ); has '_number_of_isolates' => ( is => 'rw', isa => 'Int'); has '_gene_column' => ( is => 'rw', isa => 'Int'); has '_num_isolates_column' => ( is => 'rw', isa => 'Int'); has '_avg_sequences_per_isolate_column' => ( is => 'rw', isa => 'Int'); has '_genome_fragement_column' => ( is => 'rw', isa => 'Int'); has '_order_within_fragement_column' => ( is => 'rw', isa => 'Int'); has '_min_no_isolates_for_core' => ( is => 'rw', isa => 'Num', lazy => 1, builder => '_build__min_no_isolates_for_core' ); sub _build__min_no_isolates_for_core { my ($self) = @_; my $threshold = $self->_number_of_isolates * $self->core_definition; return $threshold; } sub _build__csv_parser { my ($self) = @_; return Text::CSV->new( { binary => 1, always_quote => 1} ); } sub _build__input_spreadsheet_fh { my ($self) = @_; open( my $fh, $self->spreadsheet ); return $fh; } sub _update_number_of_isolates { my ($self, $header_row) = @_; my $number_of_isolates = @{$header_row} - @{Bio::Roary::GroupStatistics->fixed_headers}; $self->_number_of_isolates($number_of_isolates); } sub _setup_column_mappings { my ($self, $header_row) = @_; # current ordering my %columns_of_interest_mappings = ( 'Gene' => 0, 'No. isolates' => 3, 'Avg sequences per isolate' => 5, 'Genome Fragment' => 6, 'Order within Fragment' => 7, 'QC' => 10, ); # Dynamically overwrite the default ordering for(my $i = 0; $i < @{$header_row}; $i++) { for my $col_name (%columns_of_interest_mappings) { if($header_row->[$i] eq $col_name) { $columns_of_interest_mappings{$col_name} = $i; last; } } } $self->_gene_column($columns_of_interest_mappings{'Gene'}); $self->_num_isolates_column($columns_of_interest_mappings{'No. isolates'}); $self->_avg_sequences_per_isolate_column($columns_of_interest_mappings{'Avg sequences per isolate'}); $self->_genome_fragement_column($columns_of_interest_mappings{'Genome Fragment'}); $self->_order_within_fragement_column($columns_of_interest_mappings{'Order within Fragment'}); $self->_update_number_of_isolates($header_row); # Get the sample_names my @sample_names; for(my $i = $self->_length_of_fixed_headers(); $i < @{$header_row}; $i++) { push(@sample_names,$header_row->[$i]); } $self->sample_names(\@sample_names); } sub _length_of_fixed_headers { my ($self) = @_; return @{Bio::Roary::GroupStatistics->fixed_headers()}; } sub _populate_sample_to_gene_lookup_with_row { my ($self, $row) = @_; for(my $i = $self->_length_of_fixed_headers(); $i < @{$row}; $i++ ) { if(defined($row->[$i]) && $row->[$i] ne "" ) { my $sample_name = $self->sample_names->[$i - $self->_length_of_fixed_headers()]; $self->sample_names_to_genes->{$sample_name}->{$row->[$i]} = 1; } } return 1; } sub _ordered_core_genes { my ($self) = @_; my %ordered_genes; while ( my $row = $self->_csv_parser->getline( $self->_input_spreadsheet_fh ) ) { next if(@{$row} < 12); # no genes in group next if(!defined($row->[$self->_gene_column]) || $row->[$self->_gene_column] eq '' ); # no gene name next if(!defined($row->[$self->_avg_sequences_per_isolate_column]) || $row->[$self->_avg_sequences_per_isolate_column] eq '' ); # no average next if(!defined($row->[$self->_genome_fragement_column]) || $row->[$self->_genome_fragement_column] eq '' ); # fragment not defined # next if($self->_number_of_isolates != $row->[$self->_num_isolates_column]); # if gene is not in all isolates next if ( $row->[$self->_num_isolates_column] < $self->_min_no_isolates_for_core ); next if($row->[$self->_avg_sequences_per_isolate_column] != 1); $ordered_genes{$row->[$self->_genome_fragement_column]}{$row->[$self->_order_within_fragement_column]} = $row->[$self->_gene_column]; $self->_populate_sample_to_gene_lookup_with_row($row); } my @ordered_core_genes ; for my $fragment_key(sort {$a <=> $b } keys %ordered_genes) { for my $order_within_fragement(sort {$a <=> $b } keys %{$ordered_genes{$fragment_key}}) { push(@ordered_core_genes,$ordered_genes{$fragment_key}{$order_within_fragement}); } } return \@ordered_core_genes; } sub _build_ordered_core_genes { my ($self) = @_; my $header_row = $self->_csv_parser->getline( $self->_input_spreadsheet_fh ); $self->_setup_column_mappings($header_row); return $self->_ordered_core_genes(); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/ExtractProteomeFromGFF.pm000066400000000000000000000152131304207556500220340ustar00rootroot00000000000000package Bio::Roary::ExtractProteomeFromGFF; # ABSTRACT: Take in a GFF file and create protein sequences in FASTA format =head1 SYNOPSIS Take in GFF files and create protein sequences in FASTA format use Bio::Roary::ExtractProteomeFromGFF; my $obj = Bio::Roary::ExtractProteomeFromGFF->new( gff_file => $fasta_file, ); $obj->fasta_file(); =cut use Moose; use Bio::SeqIO; use Cwd; use Bio::Roary::Exceptions; use File::Basename; use File::Temp; use File::Copy; use Bio::Tools::GFF; with 'Bio::Roary::JobRunner::Role'; with 'Bio::Roary::BedFromGFFRole'; has 'gff_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'apply_unknowns_filter' => ( is => 'rw', isa => 'Bool', default => 1 ); has 'maximum_percentage_of_unknowns' => ( is => 'ro', isa => 'Num', default => 5 ); has 'output_filename' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_output_filename' ); has 'fasta_file' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_fasta_file' ); has '_working_directory' => ( is => 'ro', isa => 'File::Temp::Dir', default => sub { File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } ); has '_working_directory_name' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__working_directory_name' ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); sub _build_fasta_file { my ($self) = @_; $self->_extract_nucleotide_regions; $self->_convert_nucleotide_to_protein; $self->_cleanup_fasta; $self->_cleanup_intermediate_files; $self->_filter_fasta_sequences( join('/',($self->output_directory,$self->output_filename)) ); return join('/',($self->output_directory,$self->output_filename)); } sub _build__working_directory_name { my ($self) = @_; return $self->_working_directory->dirname(); } sub _build_output_filename { my ($self) = @_; my ( $filename, $directories, $suffix ) = fileparse( $self->gff_file, qr/\.[^.]*/ ); return join( '/', ( $self->_working_directory_name, $filename . '.faa' ) ); } sub _cleanup_intermediate_files { my ($self) = @_; unlink( $self->_unfiltered_output_filename ); unlink( $self->_fastatranslate_filename ); } sub _nucleotide_fasta_file_from_gff_filename { my ($self) = @_; return join('/',($self->output_directory,join( '.', ( $self->output_filename, 'intermediate.fa' ) ))); } sub _extracted_nucleotide_fasta_file_from_bed_filename { my ($self) = @_; return join('/',($self->output_directory,join( '.', ( $self->output_filename,'intermediate.extracted.fa' ) ))); } sub _unfiltered_output_filename { my $self = shift; return join('/',($self->output_directory,join( '.', ( $self->output_filename, 'unfiltered.fa' ) ))); } sub _create_nucleotide_fasta_file_from_gff { my ($self) = @_; open(my $input_fh, $self->gff_file); open(my $output_fh, '>', $self->_nucleotide_fasta_file_from_gff_filename); my $at_sequence = 0; while(<$input_fh>) { my $line = $_; if($line =~/^>/) { $at_sequence = 1; } if($at_sequence == 1) { print {$output_fh} $line; } } close($input_fh); close($output_fh); } sub _extract_nucleotide_regions { my ($self) = @_; $self->_create_nucleotide_fasta_file_from_gff; $self->_create_bed_file_from_gff; my $cmd = 'bedtools getfasta -s -fi ' . $self->_nucleotide_fasta_file_from_gff_filename . ' -bed ' . $self->_bed_output_filename . ' -fo ' . $self->_extracted_nucleotide_fasta_file_from_bed_filename . ' -name > /dev/null 2>&1'; $self->logger->debug($cmd); system($cmd); unlink( $self->_nucleotide_fasta_file_from_gff_filename ); unlink( $self->_bed_output_filename ); unlink( $self->_nucleotide_fasta_file_from_gff_filename . '.fai' ); } sub _cleanup_fasta { my $self = shift; my $infile = $self->_unfiltered_output_filename; my $outfile = join('/',($self->output_directory,$self->output_filename)); return unless ( -e $infile ); open( my $in, '<', $infile ); open( my $out, '>', $outfile ); while ( my $line = <$in> ) { chomp $line; $line =~ s/"//g if ( $line =~ /^>/ ); if($line =~ /^(>[^:]+)/) { $line = $1; } print $out "$line\n"; } close $in; close $out; } sub _fastatranslate_filename { my ($self) = @_; return join('/',($self->output_directory,join( '.', ( $self->output_filename, 'intermediate.translate.fa' ) ))); } sub _fastatranslate { my ( $self, $inputfile, $outputfile ) = @_; my $input_fasta_file_obj = Bio::SeqIO->new( -file => $inputfile, -format => 'Fasta' ); my $output_protein_file_obj = Bio::SeqIO->new( -file => ">" . $outputfile, -format => 'Fasta', -alphabet => 'protein' ); my %protein_sequence_objs; while ( my $seq = $input_fasta_file_obj->next_seq ) { $seq->desc(undef); my $protseq = $seq->translate( -codontable_id => $self->translation_table ); $output_protein_file_obj->write_seq($protseq); } return 1; } sub _convert_nucleotide_to_protein { my ($self) = @_; $self->_fastatranslate( $self->_extracted_nucleotide_fasta_file_from_bed_filename, $self->_unfiltered_output_filename ); unlink( $self->_extracted_nucleotide_fasta_file_from_bed_filename ); } sub _does_sequence_contain_too_many_unknowns { my ( $self, $sequence_obj ) = @_; my $maximum_number_of_Xs = int( ( $sequence_obj->length() * $self->maximum_percentage_of_unknowns ) / 100 ); my $number_of_Xs_found = () = $sequence_obj->seq() =~ /X/g; if ( $number_of_Xs_found > $maximum_number_of_Xs ) { return 1; } else { return 0; } } sub _filter_fasta_sequences { my ( $self, $filename ) = @_; my $temp_output_file = $filename . '.tmp.filtered.fa'; my $out_fasta_obj = Bio::SeqIO->new( -file => ">" . $temp_output_file, -format => 'Fasta' ); my $fasta_obj = Bio::SeqIO->new( -file => $filename, -format => 'Fasta' ); my $sequence_found = 0; while ( my $seq = $fasta_obj->next_seq() ) { if ( $self->_does_sequence_contain_too_many_unknowns($seq) ) { next; } $seq->desc(undef); $out_fasta_obj->write_seq($seq); $sequence_found = 1; } if ( $sequence_found == 0 ) { $self->logger->error( "Could not extract any protein sequences from " . $self->gff_file . ". Does the file contain the assembly as well as the annotation?" ); } # Replace the original file. move( $temp_output_file, $filename ); return 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/ExtractProteomeFromGFFs.pm000066400000000000000000000057111304207556500222210ustar00rootroot00000000000000package Bio::Roary::ExtractProteomeFromGFFs; # ABSTRACT: Take in GFF files and create protein sequences in FASTA format =head1 SYNOPSIS Take in GFF files and create protein sequences in FASTA format use Bio::Roary::ExtractProteomeFromGFFs; my $plot_groups_obj = Bio::Roary::ExtractProteomeFromGFFs->new( gff_files => $fasta_files, ); $plot_groups_obj->fasta_files(); =cut use Moose; use Bio::Roary::Exceptions; use Bio::Roary::ExtractProteomeFromGFF; use File::Basename; use Cwd qw(getcwd); use File::Temp; with 'Bio::Roary::JobRunner::Role'; has 'gff_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'fasta_files' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build_fasta_files' ); has 'fasta_files_to_gff_files' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_fasta_files_to_gff_files' ); has 'apply_unknowns_filter' => ( is => 'rw', isa => 'Bool', default => 1 ); has '_queue' => ( is => 'rw', isa => 'Str', default => 'small' ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'working_directory' => ( is => 'ro', isa => 'File::Temp::Dir', default => sub { File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } ); sub _build__extract_proteome_objects { my ($self) = @_; my %extract_proteome_objects; for my $filename ( @{ $self->gff_files } ) { my $extract_proteome = Bio::Roary::ExtractProteomeFromGFF->new( gff_file => $filename, ); $extract_proteome_objects{ $filename } = $extract_proteome; } return \%extract_proteome_objects; } sub _build_fasta_files { my ($self) = @_; my @fasta_files = sort values( %{$self->fasta_files_to_gff_files} ); return \@fasta_files; } sub _build_fasta_files_to_gff_files { my ($self) = @_; my %fasta_files; my @commands_to_run; for my $filename ( @{ $self->gff_files } ) { print "Extracting proteins from $filename\n" if($self->verbose); my($gff_filename_without_directory, $directories, $suffix) = fileparse($filename); my $output_suffix = "proteome.faa"; my $output_filename = $filename.'.'.$output_suffix; $fasta_files{ $filename } = $self->working_directory.'/'.$gff_filename_without_directory.'.'.$output_suffix; push(@commands_to_run, "extract_proteome_from_gff --translation_table ".$self->translation_table." --apply_unknowns_filter ".$self->apply_unknowns_filter." -d ".$self->working_directory." -o $output_suffix $filename"); } #Farm out the computation and block until its ready my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, cpus => $self->cpus); $job_runner_obj->run(); return \%fasta_files; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/FilterFullClusters.pm000066400000000000000000000100751304207556500213360ustar00rootroot00000000000000package Bio::Roary::FilterFullClusters; # ABSTRACT: Take an a clusters file from CD-hit and the fasta file and output a fasta file without full clusters =head1 SYNOPSIS Take an a clusters file from CD-hit and the fasta file and output a fasta file without full clusters use Bio::Roary::FilterFullClusters; my $obj = Bio::Roary::FilterFullClusters->new( clusters_filename => $cluster_file, fasta_file => $fasta_file, number_of_input_files => 10, output_file => 'filtered_file' ); $obj->filter_full_clusters_from_fasta(); =cut use Moose; use Bio::SeqIO; with 'Bio::Roary::ClustersRole'; has 'number_of_input_files' => ( is => 'ro', isa => 'Int', required => 1 ); has 'fasta_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_file' => ( is => 'ro', isa => 'Str', required => 1 ); has '_greater_than_or_equal' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'cdhit_input_fasta_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'cdhit_output_fasta_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_groups_file' => ( is => 'ro', isa => 'Str', required => 1 ); has '_full_cluster_gene_names' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__full_cluster_gene_names' ); has '_input_seqio' => ( is => 'ro', isa => 'Bio::SeqIO', lazy => 1, builder => '_build__input_seqio' ); has '_output_seqio' => ( is => 'ro', isa => 'Bio::SeqIO', lazy => 1, builder => '_build__output_seqio' ); has '_all_full_cluster_genes' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__all_full_cluster_genes' ); sub _build__full_cluster_gene_names { my($self) = @_; my %full_cluster_gene_names ; for my $gene_name (keys %{$self->_clustered_genes}) { if($self->_greater_than_or_equal == 0) { if(defined($self->_clustered_genes->{$gene_name}) && @{$self->_clustered_genes->{$gene_name}} >= ($self->number_of_input_files -1)) { $full_cluster_gene_names{$gene_name}++; } } else { if(defined($self->_clustered_genes->{$gene_name}) && @{$self->_clustered_genes->{$gene_name}} == ($self->number_of_input_files -1)) { $full_cluster_gene_names{$gene_name}++; } } } return \%full_cluster_gene_names; } sub _build__input_seqio { my ($self) = @_; return Bio::SeqIO->new( -file => $self->fasta_file, -format => 'Fasta' ); } sub _build__output_seqio { my ( $self, $chunk_number ) = @_; return Bio::SeqIO->new( -file => ">".$self->output_file, -format => 'Fasta' ); } sub _build__all_full_cluster_genes { my ($self) = @_; my %full_cluster_genes; for my $gene_name (keys %{$self->_full_cluster_gene_names}) { $full_cluster_genes{$gene_name}++; for my $cluster_gene_name (@{$self->_clustered_genes->{$gene_name}}) { $full_cluster_genes{$cluster_gene_name}++; } } return \%full_cluster_genes; } sub _create_groups_file { my ($self) = @_; open(my $out_fh, '>>', $self->output_groups_file); for my $gene_name (keys %{$self->_full_cluster_gene_names}) { print {$out_fh} $gene_name."\t". join("\t", @{$self->_clustered_genes->{$gene_name}}). "\n"; } close($out_fh); } sub filter_complete_cluster_from_original_fasta { my ($self) = @_; my $input_seq_io = Bio::SeqIO->new( -file => $self->cdhit_input_fasta_file, -format => 'Fasta' ); my $output_seq_io = Bio::SeqIO->new( -file => ">".$self->cdhit_output_fasta_file, -format => 'Fasta' ); while ( my $input_seq = $input_seq_io->next_seq() ) { unless(defined($self->_all_full_cluster_genes->{$input_seq->display_id})) { $output_seq_io->write_seq($input_seq); } } $self->_create_groups_file; return $self; } sub filter_full_clusters_from_fasta { my ($self) = @_; while ( my $input_seq = $self->_input_seqio->next_seq() ) { unless(defined($self->_full_cluster_gene_names->{$input_seq->display_id})) { $self->_output_seqio->write_seq($input_seq); } } return $self; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/FilterUnknownsFromFasta.pm000066400000000000000000000046231304207556500223360ustar00rootroot00000000000000package Bio::Roary::FilterUnknownsFromFasta; # ABSTRACT: Take in fasta files, remove sequences with too many unknowns and return a list of the new files =head1 SYNOPSIS Take in fasta files, remove sequences with too many unknowns and return a list of the new files use Bio::Roary::FilterUnknownsFromFasta; my $obj = Bio::Roary::FilterUnknownsFromFasta->new( fasta_files => [], ); $obj->filtered_fasta_files(); =cut use Moose; use Bio::SeqIO; use Cwd; use Bio::Roary::Exceptions; use File::Basename; has 'fasta_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'apply_unknowns_filter' => ( is => 'rw', isa => 'Bool', default => 1 ); has 'maximum_percentage_of_unknowns' => ( is => 'ro', isa => 'Num', default => 5 ); has 'filtered_fasta_files' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build_filtered_fasta_files' ); has 'input_fasta_to_output_fasta' => ( is => 'ro', isa => 'HashRef', default => sub {{}} ); sub _build_filtered_fasta_files { my ($self) = @_; my @output_file_names; for my $fasta_file (@{$self->fasta_files}) { my ( $filename, $directories, $suffix ) = fileparse($fasta_file); push(@output_file_names, $self->_filter_fasta_sequences_and_return_new_file($filename,$fasta_file )); } return \@output_file_names; } sub _does_sequence_contain_too_many_unknowns { my ($self, $sequence_obj) = @_; my $maximum_number_of_Xs = int(($sequence_obj->length()*$self->maximum_percentage_of_unknowns)/100); my $number_of_Xs_found = () = $sequence_obj->seq() =~ /X/g; if($number_of_Xs_found > $maximum_number_of_Xs) { return 1; } else { return 0; } } sub _filter_fasta_sequences_and_return_new_file { my ($self, $output_file, $input_file) = @_; my $output_filename = $output_file.'.tmp.filtered.fa'; my $out_fasta_obj = Bio::SeqIO->new( -file => ">".$output_filename, -format => 'Fasta'); my $fasta_obj = Bio::SeqIO->new( -file => $input_file, -format => 'Fasta'); $self->input_fasta_to_output_fasta->{$input_file} = $output_filename; while(my $seq = $fasta_obj->next_seq()) { if($self->_does_sequence_contain_too_many_unknowns($seq)) { next; } # strip out extra details put in by fastatranslate $seq->description(undef); $out_fasta_obj->write_seq($seq); } return $output_filename; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/GeneNamesFromGFF.pm000066400000000000000000000045111304207556500205500ustar00rootroot00000000000000package Bio::Roary::GeneNamesFromGFF; # ABSTRACT: Parse a GFF and efficiently extract ID -> Gene Name =head1 SYNOPSIS Parse a GFF and efficiently extract ID -> Gene Name use Bio::Roary::GeneNamesFromGFF; my $obj = Bio::Roary::GeneNamesFromGFF->new( gff_file => 'abc.gff' ); $obj->ids_to_gene_name; =cut use Moose; use Bio::Tools::GFF; with 'Bio::Roary::ParseGFFAnnotationRole'; has 'ids_to_gene_name' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_ids_to_gene_name' ); has 'ids_to_product' => ( is => 'rw', isa => 'HashRef', default => sub { {} } ); has 'ids_to_gene_size' => ( is => 'rw', isa => 'HashRef', default => sub { {} } ); # Parsing with the perl GFF module is exceptionally slow. sub _build_ids_to_gene_name { my ($self) = @_; my %id_to_gene_name; my $gffio = Bio::Tools::GFF->new( -file => $self->gff_file, -gff_version => 3 ); while ( my $feature = $gffio->next_feature() ) { my $gene_id = $self->_get_feature_id($feature); next unless ($gene_id); if ( $feature->has_tag('gene') ) { my ( $gene_name, @junk ) = $feature->get_tag_values('gene'); $gene_name =~ s!"!!g; if ( $gene_name ne "" ) { $id_to_gene_name{$gene_id} = $gene_name; } } elsif ( $feature->has_tag('Name') ) { my ( $gene_name, @junk ) = $feature->get_tag_values('Name'); $gene_name =~ s!"!!g; if ( $gene_name ne "" ) { $id_to_gene_name{$gene_id} = $gene_name; } } if ( $feature->has_tag('product') ) { my ( $product, @junk ) = $feature->get_tag_values('product'); $self->ids_to_product->{$gene_id} = $product; } $self->ids_to_gene_size->{$gene_id} = $feature->end - $feature->start; } return \%id_to_gene_name; } sub _get_feature_id { my ( $self, $feature ) = @_; my ( $gene_id, @junk ); if ( $feature->has_tag('ID') ) { ( $gene_id, @junk ) = $feature->get_tag_values('ID'); } elsif ( $feature->has_tag('locus_tag') ) { ( $gene_id, @junk ) = $feature->get_tag_values('locus_tag'); } else { return undef; } $gene_id =~ s!["']!!g; return undef if ( $gene_id eq "" ); return $gene_id; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/GroupLabels.pm000066400000000000000000000032051304207556500177550ustar00rootroot00000000000000package Bio::Roary::GroupLabels; # ABSTRACT: Add labels to the groups =head1 SYNOPSIS Add labels to the groups use Bio::Roary::GroupLabels; my $obj = Bio::Roary::GroupLabels->new( groups_filename => 'abc.groups', output_filename => 'output.groups' ); $obj->add_labels; =cut use Moose; use Bio::Roary::Exceptions; has 'groups_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'labelled_groups_file' ); has '_input_fh' => ( is => 'ro', lazy => 1, builder => '_build__input_fh' ); has '_output_fh' => ( is => 'ro', lazy => 1, builder => '_build__output_fh' ); has '_group_default_prefix' => ( is => 'ro', isa => 'Str', default => 'group_' ); sub _build__input_fh { my ($self) = @_; open( my $fh, $self->groups_filename ) or Bio::Roary::Exceptions::FileNotFound->throw( error => "Group file not found:" . $self->groups_filename ); return $fh; } sub _build__output_fh { my ($self) = @_; open( my $fh, '>', $self->output_filename ) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => "Couldnt write output file:" . $self->output_filename ); return $fh; } sub add_labels { my ($self) = @_; my $counter = 1; my $in_fh = $self->_input_fh; while (<$in_fh>) { my $line = $_; next if ( $line eq "" ); print { $self->_output_fh } $self->_group_default_prefix . $counter . ": " . $line; $counter++; } close( $self->_input_fh ); close( $self->_output_fh ); return 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/GroupStatistics.pm000066400000000000000000000206761304207556500207200ustar00rootroot00000000000000package Bio::Roary::GroupStatistics; # ABSTRACT: Add labels to the groups =head1 SYNOPSIS Add labels to the groups use Bio::Roary::GroupStatistics; my $obj = Bio::Roary::GroupStatistics->new( output_filename => 'group_statitics.csv', annotate_groups_obj => $annotate_groups_obj, analyse_groups_obj => $analyse_groups_obj ); $obj->create_spreadsheet; =cut use Moose; use POSIX; use Text::CSV; use File::Basename; use Bio::SeqIO; use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; use Bio::Roary::AnnotateGroups; use Bio::Roary::PresenceAbsenceMatrix; has 'annotate_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnnotateGroups', required => 1 ); has 'analyse_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'gene_presence_absence.csv' ); has 'output_rtab_filename' => ( is => 'ro', isa => 'Str', default => 'gene_presence_absence.Rtab' ); has 'groups_to_contigs' => ( is => 'ro', isa => 'Maybe[HashRef]'); has '_output_fh' => ( is => 'ro', lazy => 1, builder => '_build__output_fh' ); has '_text_csv_obj' => ( is => 'ro', isa => 'Text::CSV', lazy => 1, builder => '_build__text_csv_obj' ); has '_sorted_file_names' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__sorted_file_names' ); has '_groups_to_files' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__groups_to_files' ); has '_files_to_groups' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__files_to_groups' ); has '_num_files_in_groups' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__num_files_in_groups' ); has '_verbose' => ( is => 'ro', isa => 'Bool', default => 0 ); sub _build__output_fh { my ($self) = @_; open( my $fh, '>', $self->output_filename ) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => "Couldnt write output file:" . $self->output_filename ); return $fh; } sub _build__text_csv_obj { my ($self) = @_; return Text::CSV->new( { binary => 1, always_quote => 1, eol => "\r\n" } ); } sub fixed_headers { my ($self) = @_; my @header = ( 'Gene', 'Non-unique Gene name', 'Annotation', 'No. isolates', 'No. sequences', 'Avg sequences per isolate', 'Genome Fragment','Order within Fragment', 'Accessory Fragment','Accessory Order with Fragment', 'QC','Min group size nuc', 'Max group size nuc', 'Avg group size nuc' ); return \@header; } sub _sample_headers { my ($self) = @_; my @header; for my $filename ( @{ $self->_sorted_file_names } ) { my $filename_cpy = basename($filename); $filename_cpy =~ s!\.gff\.proteome\.faa!!; push( @header, $filename_cpy ); } return \@header; } sub _header { my ($self) = @_; my @header = @{ $self->fixed_headers }; push( @header, @{$self->_sample_headers}); push( @header, 'Inference' ) if ( $self->_verbose ); return \@header; } sub _build__sorted_file_names { my ($self) = @_; my @sorted_file_names = sort( @{ $self->analyse_groups_obj->fasta_files } ); return \@sorted_file_names; } sub _non_unique_name_for_group { my ( $self, $annotated_group_name ) = @_; my $duplicate_gene_name = ''; my $prefix = $self->annotate_groups_obj->_group_default_prefix; if ( $annotated_group_name =~ /$prefix/ ) { my $non_unique_name_for_group = $self->annotate_groups_obj->_consensus_gene_name_for_group($annotated_group_name); if ( !( $non_unique_name_for_group =~ /$prefix/ ) ) { $duplicate_gene_name = $non_unique_name_for_group; } } return $duplicate_gene_name; } sub _build__groups_to_files { my ($self) = @_; my %groups_to_files; for my $group ( @{ $self->annotate_groups_obj->_groups } ) { my $genes = $self->annotate_groups_obj->_groups_to_id_names->{$group}; my %filenames; for my $gene_name ( @{$genes} ) { my $filename = $self->analyse_groups_obj->_genes_to_file->{$gene_name}; push( @{ $filenames{$filename} }, $gene_name ); } $groups_to_files{$group} = \%filenames; } return \%groups_to_files; } sub _build__files_to_groups { my ($self) = @_; my %files_to_groups; for my $group (keys %{$self->_groups_to_files}) { for my $filename (keys %{$self->_groups_to_files->{$group}}) { push(@{$files_to_groups{$filename}}, $group); } } return \%files_to_groups; } sub _build__num_files_in_groups { my ($self) = @_; my %num_files_in_groups; for my $group (@{ $self->annotate_groups_obj->_groups }) { my $num_files = $self->analyse_groups_obj->_count_num_files_in_group( $self->annotate_groups_obj->_groups_to_id_names->{$group}); $num_files_in_groups{$group} = $num_files; } return \%num_files_in_groups; } sub _row { my ( $self, $group ) = @_; my $genes = $self->annotate_groups_obj->_groups_to_id_names->{$group}; my $num_isolates_in_group = $self->analyse_groups_obj->_count_num_files_in_group($genes); my $num_sequences_in_group = $#{$genes} + 1; my $avg_sequences_per_isolate = ceil( ( $num_sequences_in_group / $num_isolates_in_group ) * 100 ) / 100; my $annotation = $self->annotate_groups_obj->consensus_product_for_id_names($genes); my $annotated_group_name = $self->annotate_groups_obj->_groups_to_consensus_gene_names->{$group}; my $duplicate_gene_name = $self->_non_unique_name_for_group($annotated_group_name); my $genome_number = ''; my $qc_comment = ''; my $order_within_fragement = ''; my $accessory_order_within_fragement = ''; my $accessory_genome_number = ''; if(defined($self->groups_to_contigs) && defined($self->groups_to_contigs->{$annotated_group_name})) { $genome_number = $self->groups_to_contigs->{$annotated_group_name}->{label}; $qc_comment = $self->groups_to_contigs->{$annotated_group_name}->{comment}; $order_within_fragement = $self->groups_to_contigs->{$annotated_group_name}->{order}; $accessory_genome_number = $self->groups_to_contigs->{$annotated_group_name}->{accessory_label}; $accessory_order_within_fragement = $self->groups_to_contigs->{$annotated_group_name}->{accessory_order}; } my $group_size = $self->annotate_groups_obj->group_nucleotide_lengths->{$group}; my @row = ( $annotated_group_name, $duplicate_gene_name, $annotation, $num_isolates_in_group, $num_sequences_in_group, $avg_sequences_per_isolate,$genome_number,$order_within_fragement,$accessory_genome_number,$accessory_order_within_fragement,$qc_comment,$group_size->{min}, $group_size->{max}, $group_size->{average} ); for(my $i =0; $i < @row; $i++) { if(!defined($row[$i])) { $row[$i] = ''; } } for my $filename ( @{ $self->_sorted_file_names } ) { my $group_to_file_genes = $self->_groups_to_files->{$group}->{$filename}; if ( defined($group_to_file_genes) && @{$group_to_file_genes} > 0 ) { push( @row, join( "\t", @{$group_to_file_genes} ) ); next; } else { push( @row, '' ); } } ## ADD INFERENCE AND FULL ANNOTATION IF VERBOSE REQUESTED ## if ( $self->_verbose ){ my ( $full_annotation, $inference ); $row[2] = $self->annotate_groups_obj->full_annotation($group); push( @row, $self->annotate_groups_obj->inference($group) ); } return \@row; } sub create_rtab { my ($self) = @_; my $presence_absence_matrix_obj = Bio::Roary::PresenceAbsenceMatrix->new( output_filename => $self->output_rtab_filename, annotate_groups_obj => $self->annotate_groups_obj, sorted_file_names => $self->_sorted_file_names, groups_to_files => $self->_groups_to_files, num_files_in_groups => $self->_num_files_in_groups, sample_headers => $self->_sample_headers, ); $presence_absence_matrix_obj->create_matrix_file; return $self; } sub create_spreadsheet { my ($self) = @_; $self->_text_csv_obj->print( $self->_output_fh, $self->_header ); for my $group (sort {$self->_num_files_in_groups->{$b}<=>$self->_num_files_in_groups->{$a} || $a cmp $b} keys %{$self->_num_files_in_groups}){ $self->_text_csv_obj->print( $self->_output_fh, $self->_row($group) ); } close( $self->_output_fh ); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/InflateClusters.pm000066400000000000000000000057531304207556500206570ustar00rootroot00000000000000package Bio::Roary::InflateClusters; # ABSTRACT: Take the clusters file from cd-hit and use it to inflate the output of MCL =head1 SYNOPSIS Take the clusters file from cd-hit and use it to inflate the output of MCL use Bio::Roary::InflateClusters; my $obj = Bio::Roary::InflateClusters->new( clusters_filename => 'example.clstr', mcl_filename => 'example.mcl', output_file => 'example.output' ); $obj->inflate; =cut use Moose; use Bio::Roary::Exceptions; with 'Bio::Roary::ClustersRole'; has 'mcl_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_file' => ( is => 'ro', isa => 'Str', default => 'inflated_results' ); has '_mcl_fh' => ( is => 'ro',lazy => 1, builder => '_build__mcl_fh' ); has '_output_fh' => ( is => 'ro',lazy => 1, builder => '_build__output_fh' ); has 'cdhit_groups_filename' => ( is => 'ro', isa => 'Maybe[Str]' ); sub _build__output_fh { my($self) = @_; open(my $fh, '>', $self->output_file) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => 'Cant write to file: ' . $self->output_file ); return $fh; } sub _build__mcl_fh { my($self) = @_; open(my $fh, $self->mcl_filename) or Bio::Roary::Exceptions::FileNotFound->throw( error => 'Cant open file: ' . $self->mcl_filename ); return $fh; } sub _inflate_line { my($self, $line) = @_; my @inflated_genes; chomp($line); my @gene_names = split(/[\t\s]+/, $line); for my $gene_name (@gene_names) { push(@inflated_genes, $self->_inflate_gene($gene_name)); } return join(' ',@inflated_genes); } sub _inflate_gene { my($self, $gene_name) = @_; my $inflated_gene = $gene_name; if(defined($self->_clustered_genes->{$gene_name})) { $inflated_gene = $inflated_gene."\t". join("\t",@{$self->_clustered_genes->{$gene_name}}); delete($self->_clustered_genes->{$gene_name}); } return $inflated_gene; } sub inflate { my($self) = @_; my $mcl_fh = $self->_mcl_fh; # Inflate genes from cdhit which were sent to mcl while(<$mcl_fh>) { my $line = $_; print { $self->_output_fh } $self->_inflate_line($line) . "\n"; } # Inflate any clusters that were in the clusters file but not sent to mcl for my $gene_name(keys %{$self->_clustered_genes}) { next unless(defined($self->_clustered_genes->{$gene_name})); print { $self->_output_fh } $gene_name."\t". join("\t",@{$self->_clustered_genes->{$gene_name}})."\n"; } if(defined($self->cdhit_groups_filename)) { # Add clusters which were excluded because the groups were full at the cdhit stage open(my $cdhit_fh, $self->cdhit_groups_filename) or Bio::Roary::Exceptions::FileNotFound->throw( error => "CD hit group file not found: " . $self->cdhit_groups_filename); while(<$cdhit_fh>) { my $line = $_; if(defined($line)) { print { $self->_output_fh } $line ; } } } close($self->_output_fh); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/IterativeCdhit.pm000066400000000000000000000103531304207556500204500ustar00rootroot00000000000000package Bio::Roary::IterativeCdhit; # ABSTRACT: Run CDhit iteratively with reducing thresholds, removing full clusters each time =head1 SYNOPSIS Run CDhit iteratively with reducing thresholds, removing full clusters each time use Bio::Roary::IterativeCdhit; my $obj = Bio::Roary::IterativeCdhit->new( output_cd_hit_filename => 'output_cd_hit_filename.fa', output_combined_filename => 'output_combined_filename.fa', number_of_input_files => 5, output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa', ); $obj->run; =cut use Moose; use Bio::SeqIO; use Bio::Roary::Exceptions; use Bio::Roary::External::Cdhit; use Bio::Roary::FilterFullClusters; use File::Copy; use Log::Log4perl qw(:easy); # CD hit is run locally has 'output_cd_hit_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_combined_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'number_of_input_files' => ( is => 'ro', isa => 'Int', required => 1 ); has 'output_filtered_clustered_fasta' => ( is => 'ro', isa => 'Str', required => 1 ); has 'lower_bound_percentage' => ( is => 'ro', isa => 'Num', default => 0.98 ); has 'upper_bound_percentage' => ( is => 'ro', isa => 'Num', default => 0.99 ); has 'step_size_percentage' => ( is => 'ro', isa => 'Num', default => 0.005 ); has 'cpus' => ( is => 'ro', isa => 'Int', default => 1 ); has 'logger' => ( is => 'ro', lazy => 1, builder => '_build_logger'); sub _build_logger { my ($self) = @_; Log::Log4perl->easy_init(level => $ERROR); my $logger = get_logger(); return $logger; } sub run { my ($self) = @_; $self->filter_complete_clusters( $self->output_cd_hit_filename, 1, $self->output_combined_filename, $self->number_of_input_files, $self->output_filtered_clustered_fasta, 1 ); for ( my $percent_match = $self->upper_bound_percentage ; $percent_match >= $self->lower_bound_percentage ; $percent_match -= $self->step_size_percentage ) { $self->filter_complete_clusters( $self->output_cd_hit_filename, $percent_match, $self->output_combined_filename, $self->number_of_input_files, $self->output_filtered_clustered_fasta, 0 ); } my $cdhit_obj = Bio::Roary::External::Cdhit->new( input_file => $self->output_combined_filename, output_base => $self->output_cd_hit_filename, _length_difference_cutoff => $self->lower_bound_percentage, _sequence_identity_threshold => $self->lower_bound_percentage, cpus => $self->cpus, logger => $self->logger ); $cdhit_obj->run(); return $cdhit_obj->clusters_filename; } sub filter_complete_clusters { my ( $self, $output_cd_hit_filename, $percentage_match, $output_combined_filename, $number_of_input_files, $output_filtered_clustered_fasta, $greater_than_or_equal ) = @_; my $cdhit_obj = Bio::Roary::External::Cdhit->new( input_file => $output_combined_filename, output_base => $output_cd_hit_filename, _length_difference_cutoff => $percentage_match, _sequence_identity_threshold => $percentage_match, cpus => $self->cpus, ); $cdhit_obj->run(); my $filter_clusters = Bio::Roary::FilterFullClusters->new( clusters_filename => $cdhit_obj->clusters_filename, fasta_file => $output_cd_hit_filename, number_of_input_files => $number_of_input_files, output_file => $output_filtered_clustered_fasta, _greater_than_or_equal => $greater_than_or_equal, cdhit_input_fasta_file => $output_combined_filename, cdhit_output_fasta_file => $output_combined_filename . '.filtered', output_groups_file => $output_combined_filename . '.groups' ); $filter_clusters->filter_complete_cluster_from_original_fasta(); move( $filter_clusters->cdhit_output_fasta_file, $output_combined_filename ); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/JobRunner/000077500000000000000000000000001304207556500171045ustar00rootroot00000000000000Roary-3.8.0/lib/Bio/Roary/JobRunner/Local.pm000066400000000000000000000024401304207556500204740ustar00rootroot00000000000000package Bio::Roary::JobRunner::Local; # ABSTRACT: Execute a set of commands locally =head1 SYNOPSIS Execute a set of commands locally use Bio::Roary::JobRunner::Local; my $obj = Bio::Roary::JobRunner::Local->new( commands_to_run => ['ls', 'echo "abc"'], ); $obj->run(); =cut use Moose; use Log::Log4perl qw(:easy); has 'commands_to_run' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'logger' => ( is => 'ro', lazy => 1, builder => '_build_logger'); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'memory_in_mb' => ( is => 'rw', isa => 'Int', default => '200' ); sub run { my ($self) = @_; for my $command_to_run ( @{ $self->commands_to_run } ) { $self->logger->info($command_to_run); system($command_to_run ); } 1; } sub _construct_dependancy_params { my ($self) = @_; return ''; } sub submit_dependancy_job { my ( $self,$command_to_run) = @_; $self->logger->info($command_to_run); system($command_to_run ); } sub _build_logger { my ($self) = @_; my $level = $ERROR; if($self->verbose) { $level = $DEBUG; } Log::Log4perl->easy_init($level); my $logger = get_logger(); return $logger; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/JobRunner/Parallel.pm000066400000000000000000000033411304207556500211770ustar00rootroot00000000000000package Bio::Roary::JobRunner::Parallel; # ABSTRACT: Use GNU Parallel =head1 SYNOPSIS Execute a set of commands using GNU parallel use Bio::Roary::JobRunner::Parallel; my $obj = Bio::Roary::JobRunner::Local->new( commands_to_run => ['ls', 'echo "abc"'], max_jobs => 4 ); $obj->run(); =cut use Moose; use File::Temp qw/ tempfile /; use Log::Log4perl qw(:easy); use File::Slurper 'write_text'; use File::Temp qw/ tempfile /; has 'commands_to_run' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'cpus' => ( is => 'ro', isa => 'Int', default => 1 ); has 'logger' => ( is => 'ro', lazy => 1, builder => '_build_logger'); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'memory_in_mb' => ( is => 'rw', isa => 'Int', default => '200' ); sub run { my ($self) = @_; my($fh, $temp_command_filename) = tempfile(); write_text($temp_command_filename, join("\n", @{ $self->commands_to_run }) ); for my $command_to_run(@{ $self->commands_to_run }) { $self->logger->info($command_to_run); } my $parallel_command = "parallel --gnu -j ".$self->cpus." < ".$temp_command_filename ; $self->logger->info($parallel_command ); system($parallel_command); 1; } sub _construct_dependancy_params { my ($self) = @_; return ''; } sub submit_dependancy_job { my ( $self,$command_to_run) = @_; $self->logger->info($command_to_run); system($command_to_run ); } sub _build_logger { my ($self) = @_; my $level = $ERROR; if($self->verbose) { $level = $DEBUG; } Log::Log4perl->easy_init($level); my $logger = get_logger(); return $logger; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/JobRunner/Role.pm000066400000000000000000000032461304207556500203500ustar00rootroot00000000000000package Bio::Roary::JobRunner::Role; # ABSTRACT: A role to add job runner functionality =head1 SYNOPSIS A role to add job runner functionality with 'Bio::Roary::JobRunner::Role'; =cut use Moose::Role; use Log::Log4perl qw(:easy); use File::Spec; has 'job_runner' => ( is => 'rw', isa => 'Str', default => 'Local' ); has '_job_runner_class' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__job_runner_class' ); has 'memory_in_mb' => ( is => 'rw', isa => 'Int', default => '200' ); has '_queue' => ( is => 'rw', isa => 'Str', default => 'normal' ); has 'dont_wait' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'cpus' => ( is => 'ro', isa => 'Int', default => 1 ); has 'logger' => ( is => 'ro', lazy => 1, builder => '_build_logger'); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); sub _build_logger { my ($self) = @_; my $level = $ERROR; if($self->verbose) { $level = $DEBUG; } Log::Log4perl->easy_init($level); my $logger = get_logger(); return $logger; } sub _build__job_runner_class { my ($self) = @_; my $job_runner_class = "Bio::Roary::JobRunner::" . $self->job_runner; eval "require $job_runner_class"; return $job_runner_class; } sub _find_exe { my($self,$executables) = @_; # If there is an explicit full path passed in, just return. if($executables->[0] =~ m!/!) { return $executables->[0]; } for my $dir (File::Spec->path) { for my $exec (@{$executables}) { my $exe = File::Spec->catfile($dir, $exec); return $exe if -x $exe; } } return $executables->[0]; } 1; Roary-3.8.0/lib/Bio/Roary/LookupGeneFiles.pm000066400000000000000000000024331304207556500205730ustar00rootroot00000000000000package Bio::Roary::LookupGeneFiles; # ABSTRACT: Take in an ordering of genes and a directory and return an ordered list of file locations =head1 SYNOPSIS Take in an ordering of genes and a directory and return an ordered list of file locations use Bio::Roary::LookupGeneFiles; my $obj = Bio::Roary::LookupGeneFiles->new( multifasta_directory => 'pan_genome_sequences', ordered_genes => ['gene5','gene2','gene3'], ); $obj->ordered_gene_files(); =cut use Moose; has 'multifasta_directory' => ( is => 'ro', isa => 'Str', default => 'pan_genome_sequences' ); has 'ordered_genes' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'ordered_gene_files' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build_ordered_gene_files' ); sub _build_ordered_gene_files { my ($self) = @_; my @gene_files; for my $gene (@{$self->ordered_genes}) { $gene =~ s!\W!_!gi; my $filename = $gene.'.fa.aln'; my $gene_filepath = join('/',($self->multifasta_directory, $filename)); if(! -e $gene_filepath) { print "Core gene file missing: ". $gene_filepath."\n"; } else { push(@gene_files, $gene_filepath); } } return \@gene_files; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/MergeMultifastaAlignments.pm000066400000000000000000000104051304207556500226510ustar00rootroot00000000000000package Bio::Roary::MergeMultifastaAlignments; # ABSTRACT: Merge multifasta alignment files with equal numbers of sequences. =head1 SYNOPSIS Merge multifasta alignment files with equal numbers of sequences.So each sequence in each file gets concatenated together. It is assumed the sequences are in the correct order. use Bio::Roary::MergeMultifastaAlignments; my $obj = Bio::Roary::MergeMultifastaAlignments->new( multifasta_files => [], output_filename => 'output_merged.aln' ); $obj->merge_files; =cut use Moose; use Bio::SeqIO; use Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL; has 'multifasta_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'sample_names' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'sample_names_to_genes' => ( is => 'rw', isa => 'HashRef', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'core_alignment.aln' ); has 'output_header_filename' => ( is => 'ro', isa => 'Str', default => 'core_alignment_header.embl' ); has '_output_seqio_obj' => ( is => 'ro', isa => 'Bio::SeqIO', lazy => 1, builder => '_build__output_seqio_obj' ); has '_gene_lengths' => ( is => 'rw', isa => 'HashRef', lazy => 1, builder => '_build__gene_lengths' ); has '_gene_to_sequence' => ( is => 'rw', isa => 'HashRef', default => sub { {} } ); has '_sorted_multifasta_files' => ( is => 'rw', isa => 'ArrayRef', lazy => 1, builder => '_build__sorted_multifasta_files' ); sub BUILD { my ($self) = @_; $self->_gene_lengths; } sub _input_seq_io_obj { my ( $self, $filename ) = @_; return Bio::SeqIO->new( -file => $filename, -format => 'Fasta' ); } sub _build__output_seqio_obj { my ($self) = @_; return Bio::SeqIO->new( -file => ">" . $self->output_filename, -format => 'Fasta' ); } sub _build__gene_lengths { my ($self) = @_; my %gene_lengths; for my $filename ( @{ $self->_sorted_multifasta_files } ) { my $seq_io = $self->_input_seq_io_obj($filename); next unless ( defined($seq_io) ); while ( my $seq_record = $seq_io->next_seq ) { # Save all of the gene sequences to memory, massive speedup but a bit naughty. $self->_gene_to_sequence->{$filename}->{ $seq_record->display_id } = $seq_record->seq; $gene_lengths{$filename} = $seq_record->length() if ( !defined( $gene_lengths{$filename} ) ); } } return \%gene_lengths; } sub _build__sorted_multifasta_files { my ($self) = @_; my @sorted_gene_files = sort @{ $self->multifasta_files }; return \@sorted_gene_files; } sub _sequence_for_sample_from_gene_file { my ( $self, $sample_name, $gene_file ) = @_; # loop over this to get the geneIDs for my $gene_id ( keys %{ $self->_gene_to_sequence->{$gene_file} } ) { if ( defined( $self->sample_names_to_genes->{$sample_name}->{$gene_id} ) ) { return $self->_gene_to_sequence->{$gene_file}->{$gene_id}; } } return $self->_padded_string_for_gene_file($gene_file); } sub _padded_string_for_gene_file { my ( $self, $gene_file ) = @_; return '' unless ( defined( $self->_gene_lengths->{$gene_file} ) ); return 'N' x ( $self->_gene_lengths->{$gene_file} ); } sub _create_merged_sequence_for_sample { my ( $self, $sample_name ) = @_; my $merged_sequence = ''; for my $gene_file ( @{ $self->_sorted_multifasta_files } ) { $merged_sequence .= $self->_sequence_for_sample_from_gene_file( $sample_name, $gene_file ); } return $merged_sequence; } sub merge_files { my ($self) = @_; for my $sample_name ( @{ $self->sample_names } ) { my $sequence = $self->_create_merged_sequence_for_sample($sample_name); my $seq_io = Bio::Seq->new( -display_id => $sample_name, -seq => $sequence ); $self->_output_seqio_obj->write_seq($seq_io); } # Create a header file which gives the coordinates of each gene in the multifasta Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new( multifasta_files => $self->_sorted_multifasta_files, gene_lengths => $self->_gene_lengths, output_filename => $self->output_header_filename )->create_file(); return 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/OrderGenes.pm000066400000000000000000000355441304207556500176060ustar00rootroot00000000000000package Bio::Roary::OrderGenes; # ABSTRACT: Take in GFF files and create a matrix of what genes are beside what other genes =head1 SYNOPSIS Take in the analyse groups and create a matrix of what genes are beside what other genes use Bio::Roary::OrderGenes; my $obj = Bio::Roary::OrderGenes->new( analyse_groups_obj => $analyse_groups_obj, gff_files => ['file1.gff','file2.gff'] ); $obj->groups_to_contigs; =cut use Moose; use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; use Bio::Roary::ContigsToGeneIDsFromGFF; use Graph; use Graph::Writer::Dot; use File::Basename; has 'gff_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'analyse_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', required => 1 ); has 'core_definition' => ( is => 'ro', isa => 'Num', default => 1.0 ); has 'pan_graph_filename' => ( is => 'ro', isa => 'Str', default => 'core_accessory_graph.dot' ); has 'accessory_graph_filename' => ( is => 'ro', isa => 'Str', default => 'accessory_graph.dot' ); has 'sample_weights' => ( is => 'ro', isa => 'Maybe[HashRef]' ); has 'samples_to_clusters' => ( is => 'ro', isa => 'Maybe[HashRef]' ); has 'group_order' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_group_order' ); has 'groups_to_sample_names' => ( is => 'rw', isa => 'HashRef', default => sub { {} } ); has 'group_graphs' => ( is => 'ro', isa => 'Graph', lazy => 1, builder => '_build_group_graphs' ); has 'groups_to_contigs' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_groups_to_contigs' ); has '_groups_to_file_contigs' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__groups_to_file_contigs' ); has '_groups' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_groups' ); has 'number_of_files' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build_number_of_files' ); has '_groups_qc' => ( is => 'ro', isa => 'HashRef', default => sub { {} } ); has '_percentage_of_largest_weak_threshold' => ( is => 'ro', isa => 'Num', default => 0.9 ); sub _build_number_of_files { my ($self) = @_; return @{ $self->gff_files }; } sub _build_groups { my ($self) = @_; my %groups; for my $group_name ( @{ $self->analyse_groups_obj->_groups } ) { $groups{$group_name}++; } return \%groups; } sub _build__groups_to_file_contigs { my ($self) = @_; my @overlapping_hypothetical_gene_ids; my %samples_to_groups_contigs; # Open each GFF file for my $filename ( @{ $self->gff_files } ) { my @groups_to_contigs; my $contigs_to_ids_obj = Bio::Roary::ContigsToGeneIDsFromGFF->new( gff_file => $filename ); my ( $sample_name, $directories, $suffix ) = fileparse($filename); $sample_name =~ s/\.gff//gi; # Loop over each contig in the GFF file for my $contig_name ( keys %{ $contigs_to_ids_obj->contig_to_ids } ) { my @groups_on_contig; # loop over each gene in each contig in the GFF file for my $gene_id ( @{ $contigs_to_ids_obj->contig_to_ids->{$contig_name} } ) { # convert to group name my $group_name = $self->analyse_groups_obj->_genes_to_groups->{$gene_id}; next unless ( defined($group_name) ); if ( $contigs_to_ids_obj->overlapping_hypothetical_protein_ids->{$gene_id} ) { $self->_groups_qc->{$group_name} = 'Hypothetical protein with no hits to refseq/uniprot/clusters/cdd/tigrfams/pfam overlapping another protein with hits'; } push( @groups_on_contig, $group_name ); } push( @groups_to_contigs, \@groups_on_contig ); } $samples_to_groups_contigs{$sample_name} = \@groups_to_contigs; } return \%samples_to_groups_contigs; } sub _build_group_order { my ($self) = @_; my %group_order; my %groups_to_sample_names; for my $sample_name ( keys %{ $self->_groups_to_file_contigs } ) { my $groups_to_file_contigs = $self->_groups_to_file_contigs->{$sample_name}; for my $groups_on_contig ( @{$groups_to_file_contigs} ) { for ( my $i = 1 ; $i < @{$groups_on_contig} ; $i++ ) { my $group_from = $groups_on_contig->[ $i - 1 ]; my $group_to = $groups_on_contig->[$i]; if ( defined( $self->sample_weights ) && $self->sample_weights->{$sample_name} ) { $group_order{$group_from}{$group_to} += $self->sample_weights->{$sample_name}; push( @{ $groups_to_sample_names{$group_from} }, $sample_name ); } else { $group_order{$group_from}{$group_to}++; } } if ( @{$groups_on_contig} == 1 ) { my $group_from = $groups_on_contig->[0]; my $group_to = $groups_on_contig->[0]; if ( defined( $self->sample_weights ) && $self->sample_weights->{$sample_name} ) { $group_order{$group_from}{$group_to} += $self->sample_weights->{$sample_name}; push( @{ $groups_to_sample_names{$group_from} }, $sample_name ); } else { $group_order{$group_from}{$group_to}++; } } } } $self->groups_to_sample_names( \%groups_to_sample_names ); return \%group_order; } sub _build_group_graphs { my ($self) = @_; return Graph->new( undirected => 1 ); } sub _save_graph_to_file { my ( $self, $graph, $output_filename ) = @_; my $writer = Graph::Writer::Dot->new(); $writer->write_graph( $graph, $output_filename ); return 1; } sub _add_groups_to_graph { my ($self) = @_; for my $current_group ( keys %{ $self->group_order() } ) { for my $group_to ( keys %{ $self->group_order->{$current_group} } ) { my $weight = 1.0 / ( $self->group_order->{$current_group}->{$group_to} ); $self->group_graphs->add_weighted_edge( $current_group, $group_to, $weight ); } } } sub _reorder_connected_components { my ( $self, $graph_groups ) = @_; my @ordered_graph_groups; my @paths_and_weights; for my $graph_group ( @{$graph_groups} ) { my %groups; $groups{$_}++ for ( @{$graph_group} ); my $edge_sum = 0; for my $current_group ( keys %groups ) { for my $group_to ( keys %{ $self->group_order->{$current_group} } ) { next unless defined( $groups{$group_to} ); $edge_sum += $self->group_order->{$current_group}->{$group_to}; } } my %samples_in_graph; for my $current_group ( keys %groups ) { my $sample_names = $self->groups_to_sample_names->{$current_group}; if ( defined($sample_names) ) { for my $sample_name ( @{$sample_names} ) { $samples_in_graph{$sample_name}++; } } } my @sample_names = sort keys %samples_in_graph; if ( @{$graph_group} == 1 ) { push( @paths_and_weights, { path => $graph_group, average_weight => $edge_sum, sample_names => \@sample_names } ); } else { my $graph = Graph->new( undirected => 1 ); for my $current_group ( keys %groups ) { for my $group_to ( keys %{ $self->group_order->{$current_group} } ) { if ( $groups{$group_to} ) { my $weight = 1 / $self->group_order->{$current_group}->{$group_to}; $graph->add_weighted_edge( $current_group, $group_to, $weight ); } } } my $minimum_spanning_tree = $graph->minimum_spanning_tree; my $dfs_obj = Graph::Traversal::DFS->new($minimum_spanning_tree); my @reordered_dfs_groups = $dfs_obj->dfs; push( @paths_and_weights, { path => \@reordered_dfs_groups, average_weight => $edge_sum, sample_names => \@sample_names } ); } } return $self->_order_by_samples_and_weights( \@paths_and_weights ); } sub _order_by_samples_and_weights { my ( $self, $paths_and_weights ) = @_; my @ordered_graph_groups; if ( !defined( $self->samples_to_clusters ) ) { my @ordered_paths_and_weights = sort { $a->{average_weight} <=> $b->{average_weight} } @{$paths_and_weights}; @ordered_graph_groups = map { $_->{path} } @ordered_paths_and_weights; return \@ordered_graph_groups; } # Find the largest cluster in each graph and regroup my %largest_cluster_to_paths_and_weights; for my $graph_details ( @{$paths_and_weights} ) { my %cluster_count; for my $sample_name ( @{ $graph_details->{sample_names} } ) { if ( defined( $self->samples_to_clusters->{$sample_name} ) ) { $cluster_count{ $self->samples_to_clusters->{$sample_name} }++; } } my $largest_cluster = ( sort { $cluster_count{$b} <=> $cluster_count{$a} || $a cmp $b} keys %cluster_count )[0]; if ( !defined($largest_cluster) ) { my @ordered_paths_and_weights = sort { $b->{average_weight} <=> $a->{average_weight} } @{$paths_and_weights}; @ordered_graph_groups = map { $_->{path} } @ordered_paths_and_weights; return \@ordered_graph_groups; } push( @{ $largest_cluster_to_paths_and_weights{$largest_cluster}{graph_details} }, $graph_details ); $largest_cluster_to_paths_and_weights{$largest_cluster}{largest_cluster_size} += $cluster_count{$largest_cluster}; } # go through each cluster group and order by weight my @clustered_ordered_graph_groups; for my $cluster_name ( sort { $largest_cluster_to_paths_and_weights{$b}->{largest_cluster_size} <=> $largest_cluster_to_paths_and_weights{$a}->{largest_cluster_size} } keys %largest_cluster_to_paths_and_weights ) { my @ordered_paths_and_weights = sort { $b->{average_weight} <=> $a->{average_weight} } @{ $largest_cluster_to_paths_and_weights{$cluster_name}->{graph_details} }; @ordered_graph_groups = map { $_->{path} } @ordered_paths_and_weights; for my $graph_group (@ordered_graph_groups) { push( @clustered_ordered_graph_groups, $graph_group ); } } return \@clustered_ordered_graph_groups; } sub _build_groups_to_contigs { my ($self) = @_; $self->_add_groups_to_graph; my %groups_to_contigs; my $counter = 1; my $overall_counter = 1; my $counter_filtered = 1; # Accessory my $accessory_graph = $self->_create_accessory_graph; my @group_graphs = $accessory_graph->connected_components(); my $reordered_graphs = $self->_reorder_connected_components( \@group_graphs ); $self->_save_graph_to_file( $accessory_graph, $self->accessory_graph_filename ); for my $contig_groups ( @{$reordered_graphs} ) { my $order_counter = 1; for my $group_name ( @{$contig_groups} ) { $groups_to_contigs{$group_name}{accessory_label} = $counter; $groups_to_contigs{$group_name}{accessory_order} = $order_counter; $groups_to_contigs{$group_name}{'accessory_overall_order'} = $overall_counter; $order_counter++; $overall_counter++; } $counter++; } # Core + accessory my @group_graphs_all = $self->group_graphs->connected_components(); my $reordered_graphs_all = $self->_reorder_connected_components( \@group_graphs_all ); $self->_save_graph_to_file( $self->group_graphs, $self->pan_graph_filename ); $overall_counter = 1; $counter = 1; $counter_filtered = 1; for my $contig_groups ( @{$reordered_graphs_all} ) { my $order_counter = 1; for my $group_name ( @{$contig_groups} ) { $groups_to_contigs{$group_name}{label} = $counter; $groups_to_contigs{$group_name}{comment} = ''; $groups_to_contigs{$group_name}{order} = $order_counter; $groups_to_contigs{$group_name}{'core_accessory_overall_order'} = $overall_counter; if ( @{$contig_groups} <= 2 ) { $groups_to_contigs{$group_name}{comment} = 'Investigate'; } elsif ( $self->_groups_qc->{$group_name} ) { $groups_to_contigs{$group_name}{comment} = $self->_groups_qc->{$group_name}; } else { $groups_to_contigs{$group_name}{'core_accessory_overall_order_filtered'} = $counter_filtered; $counter_filtered++; } $order_counter++; $overall_counter++; } $counter++; } $counter_filtered = 1; for my $contig_groups ( @{$reordered_graphs} ) { for my $group_name ( @{$contig_groups} ) { if ( ( !defined( $groups_to_contigs{$group_name}{comment} ) ) || ( defined( $groups_to_contigs{$group_name}{comment} ) && $groups_to_contigs{$group_name}{comment} eq '' ) ) { $groups_to_contigs{$group_name}{'accessory_overall_order_filtered'} = $counter_filtered; $counter_filtered++; } } } return \%groups_to_contigs; } sub _create_accessory_graph { my ($self) = @_; my $graph = Graph->new( undirected => 1 ); my %core_groups; my %group_freq; for my $sample_name ( keys %{ $self->_groups_to_file_contigs } ) { my $groups_to_file_contigs = $self->_groups_to_file_contigs->{$sample_name}; for my $groups_on_contig ( @{$groups_to_file_contigs} ) { for my $current_group ( @{$groups_on_contig} ) { $group_freq{$current_group}++; } } } for my $current_group ( keys %{ $self->group_order() } ) { next if ( $group_freq{$current_group} >= ( $self->number_of_files * $self->core_definition ) ); for my $group_to ( keys %{ $self->group_order->{$current_group} } ) { if ( $group_freq{$group_to} >= ( $self->number_of_files * $self->core_definition ) ) { $graph->add_vertex($current_group); } else { my $weight = 1.0 / ( $self->group_order->{$current_group}->{$group_to} ); $graph->add_weighted_edge( $current_group, $group_to, $weight ); } } } return $graph; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/000077500000000000000000000000001304207556500165005ustar00rootroot00000000000000Roary-3.8.0/lib/Bio/Roary/Output/BlastIdentityFrequency.pm000066400000000000000000000032061304207556500235000ustar00rootroot00000000000000package Bio::Roary::Output::BlastIdentityFrequency; # ABSTRACT: Take in blast results and find the percentage identity graph =head1 SYNOPSIS Take in blast results and find the percentage identity graph use Bio::Roary::Output::BlastIdentityFrequency; my $obj = Bio::Roary::Output::BlastIdentityFrequency->new( input_filename => '_blast_results', output_filename => 'blast_identity_frequency.Rtab', ); $obj->create_file(); =cut use Moose; use Bio::SeqIO; use Bio::Roary::Exceptions; has 'input_filename' => ( is => 'ro', isa => 'Str', default => '_blast_results' ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'blast_identity_frequency.Rtab' ); has '_output_fh' => ( is => 'ro', lazy => 1, builder => '_build__output_fh' ); has '_input_fh' => ( is => 'ro', lazy => 1, builder => '_build__input_fh' ); sub _build__output_fh { my ($self) = @_; open( my $fh, '>', $self->output_filename ) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => "Couldnt write output file:" . $self->output_filename ); return $fh; } sub _build__input_fh { my ($self) = @_; my $input_string = 'awk \'{print $3}\' '.$self->input_filename.' | awk \'BEGIN {FS="."}; {print $1}\'| sort | uniq -c | awk \'{print $2"\t"$1}\''; open( my $fh, '-|', $input_string ) or die "Couldnt open results file"; return $fh; } sub create_file { my ($self) = @_; my $input_fh = $self->_input_fh; while(<$input_fh>) { print {$self->_output_fh} $_; } close($self->_input_fh); close($self->_output_fh); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/CoreGeneAlignmentCoordinatesEMBL.pm000066400000000000000000000057441304207556500252310ustar00rootroot00000000000000package Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL; # ABSTRACT: Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes =head1 SYNOPSIS Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes use Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL; my $obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new( output_filename => 'core_alignment_header.embl', multifasta_files => [ 't/data/multifasta_files/1.aln', 't/data/multifasta_files/outof_order.aln', 't/data/multifasta_files/2.aln', 't/data/multifasta_files/3.aln' ], gene_lengths => { 't/data/multifasta_files/1.aln' => 1, 't/data/multifasta_files/outof_order.aln' => 10, 't/data/multifasta_files/2.aln' => 100, 't/data/multifasta_files/3.aln' => 1000 }, ); $obj->create_file; =cut use Moose; use Bio::Roary::Exceptions; use File::Basename; with 'Bio::Roary::Output::EMBLHeaderCommon'; has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'core_alignment_header.embl' ); has 'multifasta_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'gene_lengths' => ( is => 'ro', isa => 'HashRef', required => 1 ); has '_current_coordinate' => ( is => 'rw', isa => 'Int', default => 1 ); has '_output_fh' => ( is => 'ro', lazy => 1, builder => '_build__output_fh' ); sub _build__output_fh { my ($self) = @_; open( my $fh, '>', $self->output_filename ) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => "Couldnt write output file:" . $self->output_filename ); return $fh; } sub _gene_name_from_filename { my ( $self, $filename ) = @_; my $gene_name = basename($filename); $gene_name =~ s!\.aln!!; $gene_name =~ s!\.fa!!; return $gene_name; } sub _header_block { my ( $self, $gene_filename ) = @_; my $gene_name = $self->_gene_name_from_filename($gene_filename); my $gene_length = $self->gene_lengths->{$gene_filename}; my $end_coordinate = $self->_current_coordinate + $gene_length - 1; my $annotation_type = $self->_annotation_type($gene_name); my $tab_file_entry = join( '', ( 'FT', $annotation_type, $self->_current_coordinate, '..', $end_coordinate, "\n" ) ); $tab_file_entry .= "FT /label=$gene_name\n"; $tab_file_entry .= "FT /locus_tag=$gene_name\n"; $self->_current_coordinate( $end_coordinate + 1 ); return $tab_file_entry; } sub create_file { my ($self) = @_; print { $self->_output_fh } $self->_header_top; for my $filename ( @{ $self->multifasta_files } ) { print { $self->_output_fh } $self->_header_block($filename); } print { $self->_output_fh } $self->_header_bottom; close( $self->_output_fh ); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/DifferenceBetweenSets.pm000066400000000000000000000075251304207556500232520ustar00rootroot00000000000000package Bio::Roary::Output::DifferenceBetweenSets; # ABSTRACT: Given two sets of isolates and a group file, output whats unique in each and whats in common =head1 SYNOPSIS Given two sets of isolates and a group file, output whats unique in each and whats in common use Bio::Roary::Output::DifferenceBetweenSets; my $obj = Bio::Roary::Output::DifferenceBetweenSets->new( analyse_groups => $analyse_groups, input_filenames_sets => [ ['aaa.faa','bbb.faa'], ['ccc.faa','ddd.faa'] ], ); $obj->groups_set_one_unique(); $obj->groups_set_two_unique(); $obj->groups_in_common(); =cut use Moose; use Bio::SeqIO; use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; use Bio::Roary::Output::QueryGroups; has 'analyse_groups' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', required => 1 ); has 'input_filenames_sets' => ( is => 'ro', isa => 'ArrayRef[ArrayRef]', required => 1 ); has 'output_filename_base' => ( is => 'ro', isa => 'Str', default => 'set_difference' ); has '_query_groups_objs' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__query_groups_objs' ); # TODO: update to handle more than 2 input sets sub _build__query_groups_objs { my ($self) = @_; my @query_groups_objs; for my $file_name_set ( @{ $self->input_filenames_sets } ) { push( @query_groups_objs, Bio::Roary::Output::QueryGroups->new( analyse_groups => $self->analyse_groups, input_filenames => $file_name_set ) ); } my @all_input_files = (@{ $self->input_filenames_sets->[0] },@{ $self->input_filenames_sets->[1] }); push( @query_groups_objs, Bio::Roary::Output::QueryGroups->new( analyse_groups => $self->analyse_groups, input_filenames => \@all_input_files ) ); return \@query_groups_objs; } sub _subtract_arrays { my ( $self, $array_1, $array_2 ) = @_; my %array_1 = map { $_ => 1 } @{$array_1}; my @difference = grep { not $array_1{$_} } @{$array_2}; return \@difference; } sub _groups_unique { my ( $self, $output_filename, $query_group1, $query_group2 ) = @_; my $unique_groups = $self->_subtract_arrays( $query_group2->_groups, $query_group1->_groups ); $query_group1->groups_with_external_inputs( $output_filename, $unique_groups ); } sub groups_set_one_unique_filename { my ($self) = @_; return $self->output_filename_base . '_unique_set_one'; } sub groups_set_two_unique_filename { my ($self) = @_; return $self->output_filename_base . '_unique_set_two'; } sub groups_in_common_filename { my ($self) = @_; return $self->output_filename_base . '_common_set'; } sub groups_set_one_unique { my ($self) = @_; $self->_groups_unique( $self->groups_set_one_unique_filename, $self->_query_groups_objs->[0], $self->_query_groups_objs->[1] ); } sub groups_set_two_unique { my ($self) = @_; $self->_groups_unique( $self->groups_set_two_unique_filename, $self->_query_groups_objs->[1], $self->_query_groups_objs->[0] ); } sub groups_in_common { my ($self) = @_; my $unique_group_1 = $self->_subtract_arrays( $self->_query_groups_objs->[0]->_groups, $self->_query_groups_objs->[1]->_groups ); my $unique_group_2 = $self->_subtract_arrays( $self->_query_groups_objs->[1]->_groups, $self->_query_groups_objs->[0]->_groups ); my $common_groups_1 = $self->_subtract_arrays( $unique_group_1,$self->_query_groups_objs->[2]->_groups); my $common_groups_2 = $self->_subtract_arrays( $unique_group_2,$common_groups_1); $self->_query_groups_objs->[2]->groups_with_external_inputs( $self->groups_in_common_filename, $common_groups_2 ); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/EMBLHeaderCommon.pm000066400000000000000000000020231304207556500220340ustar00rootroot00000000000000package Bio::Roary::Output::EMBLHeaderCommon; # ABSTRACT: a role containing some common methods for embl header files =head1 SYNOPSIS a role containing some common methods for embl header files with 'Bio::Roary::Output::EMBLHeaderCommon'; =cut use Moose::Role; sub _header_top { my ($self) = @_; my $header_lines = 'ID Genome standard; DNA; PRO; 1234 BP.' . "\n"; $header_lines .= 'XX' . "\n"; $header_lines .= 'FH Key Location/Qualifiers' . "\n"; $header_lines .= 'FH' . "\n"; return $header_lines; } sub _header_bottom { my ($self) = @_; my $header_lines = 'XX' . "\n"; $header_lines .= 'SQ Sequence 1234 BP; 789 A; 1717 C; 1693 G; 691 T; 0 other;' . "\n"; $header_lines .= '//' . "\n"; return $header_lines; } sub _annotation_type { my ( $self, $annotated_group_name ) = @_; my $annotation_type = " feature "; if ( $annotated_group_name =~ /group_/ ) { $annotation_type = " misc_feature "; } return $annotation_type; } 1; Roary-3.8.0/lib/Bio/Roary/Output/EmblGroups.pm000066400000000000000000000225261304207556500211240ustar00rootroot00000000000000package Bio::Roary::Output::EmblGroups; # ABSTRACT: Create a tab/embl file with the features for drawing pretty pictures =head1 SYNOPSIS reate a tab/embl file with the features for drawing pretty pictures use Bio::Roary::Output::EmblGroups; my $obj = Bio::Roary::Output::EmblGroups->new( output_filename => 'group_statitics.csv', annotate_groups_obj => $annotate_groups_obj, analyse_groups_obj => $analyse_groups_obj ); $obj->create_file; =cut use Moose; use POSIX; use File::Basename; use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; use Bio::Roary::AnnotateGroups; with 'Bio::Roary::Output::EMBLHeaderCommon'; has 'annotate_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnnotateGroups', required => 1 ); has 'analyse_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'core_accessory.tab' ); has 'output_header_filename' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_output_header_filename' ); has 'groups_to_contigs' => ( is => 'ro', isa => 'Maybe[HashRef]' ); has 'ordering_key' => ( is => 'ro', isa => 'Str', default => 'core_accessory_overall_order' ); has '_output_fh' => ( is => 'ro', lazy => 1, builder => '_build__output_fh' ); has '_output_header_fh' => ( is => 'ro', lazy => 1, builder => '_build__output_header_fh' ); has '_sorted_file_names' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__sorted_file_names' ); has '_groups_to_files' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__groups_to_files' ); has 'heatmap_lookup_table' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build_heatmap_lookup_table' ); sub _build__output_fh { my ($self) = @_; open( my $fh, '>', $self->output_filename ) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => "Couldnt write output file:" . $self->output_filename ); return $fh; } sub _build__output_header_fh { my ($self) = @_; open( my $fh, '>', $self->output_header_filename ) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => "Couldnt write output file:" . $self->output_filename ); return $fh; } sub _build_output_header_filename { my ($self) = @_; my $base_name = $self->output_filename; $base_name =~ s/\.tab/.header.embl/i; return $base_name; } sub _build__sorted_file_names { my ($self) = @_; my @sorted_file_names = sort( @{ $self->analyse_groups_obj->fasta_files } ); return \@sorted_file_names; } sub _build__groups_to_files { my ($self) = @_; my %groups_to_files; for my $group ( @{ $self->annotate_groups_obj->_groups } ) { my $genes = $self->annotate_groups_obj->_groups_to_id_names->{$group}; my %filenames; for my $gene_name ( @{$genes} ) { my $filename = $self->analyse_groups_obj->_genes_to_file->{$gene_name}; push( @{ $filenames{$filename} }, $gene_name ); } $groups_to_files{$group} = \%filenames; } return \%groups_to_files; } sub _block { my ( $self, $group ) = @_; my @taxon_names_array; my $annotated_group_name = $self->annotate_groups_obj->_groups_to_consensus_gene_names->{$group}; return '' if ( !( defined( $self->groups_to_contigs->{$annotated_group_name} ) && defined( $self->groups_to_contigs->{$annotated_group_name}->{ $self->ordering_key } ) ) ); return '' if ( defined( $self->groups_to_contigs->{$annotated_group_name}->{comment} ) && $self->groups_to_contigs->{$annotated_group_name}->{comment} ne '' ); my $coordindates = $self->groups_to_contigs->{$annotated_group_name}->{ $self->ordering_key }; for my $filename ( @{ $self->_sorted_file_names } ) { my $group_to_file_genes = $self->_groups_to_files->{$group}->{$filename}; if ( defined($group_to_file_genes) && @{$group_to_file_genes} > 0 ) { my $filename_cpy = basename($filename); $filename_cpy =~ s!\.gff\.proteome\.faa!!; push( @taxon_names_array, $filename_cpy ); next; } } my $colour = $self->_get_heat_map_colour( \@taxon_names_array, $self->annotate_groups_obj->_number_of_files ); my $taxon_names = join( " ", @taxon_names_array ); my $tab_file_entry = "FT variation $coordindates\n"; $tab_file_entry .= "FT /colour=$colour\n"; $tab_file_entry .= "FT /gene=$annotated_group_name\n"; $tab_file_entry .= "FT /taxa=\"$taxon_names\"\n"; return $tab_file_entry; } sub _get_heat_map_colour { my ( $self, $taxon_names, $number_of_files ) = @_; return $self->heatmap_lookup_table->[0] if ( @{$taxon_names} == 1 ); my $number_of_colours = @{ $self->heatmap_lookup_table }; return $self->heatmap_lookup_table->[ $number_of_colours - 1 ] if ( @{$taxon_names} == $number_of_files ); my $block_size = $number_of_files / @{ $self->heatmap_lookup_table }; my $colour_index = ceil( @{$taxon_names} / $block_size ) - 1; return $self->heatmap_lookup_table->[$colour_index]; } sub _build_heatmap_lookup_table { my ($self) = @_; return [ 4, # blue (RGB values: 0 0 255) 5, # cyan (RGB values: 0 255 255) 9, # light sky blue (RGB values: 135 206 250) 8, # pale green (RGB values: 152 251 152) 3, # green (RGB values: 0 255 0) 7, # yellow (RGB values: 255 255 0) 10, # orange (RGB values: 255 165 0) 16, # light red (RGB values: 255 127 127) 15, # mid red: (RGB values: 255 63 63) 2, # red (RGB values: 255 0 0) ]; } sub _block_colour { my ( $self, $accessory_label ) = @_; my $colour = 2; return $colour unless ( defined($accessory_label) ); $colour += $accessory_label % 6; return $colour; } sub _header_block { my ( $self, $group ) = @_; my $annotated_group_name = $self->annotate_groups_obj->_groups_to_consensus_gene_names->{$group}; my $colour = 1; return '' if ( !( defined( $self->groups_to_contigs->{$annotated_group_name} ) && defined( $self->groups_to_contigs->{$annotated_group_name}->{ $self->ordering_key } ) ) ); return '' if ( defined( $self->groups_to_contigs->{$annotated_group_name}->{comment} ) && $self->groups_to_contigs->{$annotated_group_name}->{comment} ne '' ); my $coordindates = $self->groups_to_contigs->{$annotated_group_name}->{ $self->ordering_key }; my $annotation_type = $self->_annotation_type($annotated_group_name); $colour = $self->_block_colour( $self->groups_to_contigs->{$annotated_group_name}->{accessory_label} ); my $tab_file_entry = "FT$annotation_type$coordindates\n"; $tab_file_entry .= "FT /label=$annotated_group_name\n"; $tab_file_entry .= "FT /locus_tag=$annotated_group_name\n"; $tab_file_entry .= "FT /colour=$colour\n"; return $tab_file_entry; } sub _fragment_blocks { my ( $self, $fh ) = @_; my %fragment_numbers; for my $group ( @{ $self->annotate_groups_obj->_groups } ) { my $annotated_group_name = $self->annotate_groups_obj->_groups_to_consensus_gene_names->{$group}; next unless ( defined( $self->groups_to_contigs->{$annotated_group_name}->{accessory_label} ) ); next unless ( defined( $self->groups_to_contigs->{$annotated_group_name}->{ $self->ordering_key } ) ); next if ( $self->groups_to_contigs->{$annotated_group_name}->{ $self->ordering_key } eq '' ); push( @{ $fragment_numbers{ $self->groups_to_contigs->{$annotated_group_name}->{accessory_label} } }, $self->groups_to_contigs->{$annotated_group_name}->{ $self->ordering_key } ); } for my $accessory_label ( keys %fragment_numbers ) { next unless ( defined( $fragment_numbers{$accessory_label} ) ); my @sorted_fragment = sort { $a <=> $b } @{ $fragment_numbers{$accessory_label} }; my $tab_file_entry = ''; if ( @sorted_fragment > 1 ) { my $min = $sorted_fragment[0]; my $max = $sorted_fragment[-1]; next if ( !defined($min) || !defined($max) || $min eq '' || $max eq '' ); $tab_file_entry = "FT feature $min" . '..' . "$max\n"; } elsif ( @sorted_fragment == 1 ) { my $min = $sorted_fragment[0]; next if ( !defined($min) || $min eq '' ); $tab_file_entry = "FT feature $min\n"; } else { next; } $tab_file_entry .= "FT /colour=" . $self->_block_colour($accessory_label) . "\n"; print {$fh} $tab_file_entry; } } sub create_files { my ($self) = @_; print { $self->_output_header_fh } $self->_header_top(); for my $group ( @{ $self->annotate_groups_obj->_groups } ) { print { $self->_output_fh } $self->_block($group); print { $self->_output_header_fh } $self->_header_block($group); } $self->_fragment_blocks( $self->_output_header_fh ); print { $self->_output_header_fh } $self->_header_bottom(); close( $self->_output_header_fh ); close( $self->_output_fh ); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/GroupMultifasta.pm000066400000000000000000000040321304207556500221630ustar00rootroot00000000000000package Bio::Roary::Output::GroupMultifasta; # ABSTRACT: Take in a group and create a multifasta file =head1 SYNOPSIS Take in a group and create a multifasta file use Bio::Roary::Output::GroupMultifasta; my $obj = Bio::Roary::Output::GroupMultifasta->new( group_name => 'aaa', analyse_groups => $analyse_groups, output_filename_base => 'abc' ); $obj->create_file(); =cut use Moose; use Bio::SeqIO; use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; has 'group_name' => ( is => 'ro', isa => 'Str', required => 1 ); has 'analyse_groups' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', required => 1 ); has 'output_filename_base' => ( is => 'ro', isa => 'Str', default => 'output_groups' ); has '_genes' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__genes' ); has '_output_seq_io' => ( is => 'ro', lazy => 1, builder => '_build__output_seq_io' ); sub _build__output_seq_io { my ($self) = @_; my $output_name = $self->output_filename_base . '_' . $self->group_name; $output_name =~ s!\W!_!g; $output_name .= '.fa'; return Bio::SeqIO->new( -file => ">" . $output_name, -format => 'Fasta' ); } sub _build__genes { my ($self) = @_; return $self->analyse_groups->_groups_to_genes->{ $self->group_name }; } sub _lookup_sequence { my ( $self, $gene, $filename ) = @_; return undef if(! defined($filename)); my $fasta_obj = Bio::SeqIO->new( -file => $filename, -format => 'Fasta' ); while ( my $seq = $fasta_obj->next_seq() ) { next unless ( $seq->display_id eq $gene ); return $seq; } return undef; } sub create_file { my ($self) = @_; for my $gene ( @{ $self->_genes } ) { my $seq = $self->_lookup_sequence( $gene, $self->analyse_groups->_genes_to_file->{$gene} ); next unless ( defined($seq) ); $self->_output_seq_io->write_seq($seq); } 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/GroupsMultifastaNucleotide.pm000066400000000000000000000146131304207556500243700ustar00rootroot00000000000000package Bio::Roary::Output::GroupsMultifastaNucleotide; # ABSTRACT: Take in a GFF files and a groups file and output one multifasta file per group with nucleotide sequences. =head1 SYNOPSIS Take in a GFF files and a groups file and output one multifasta file per group with nucleotide sequences. use Bio::Roary::Output::GroupsMultifastas; my $obj = Bio::Roary::Output::GroupsMultifastasNucleotide->new( group_names => ['aaa','bbb'], ); $obj->populate_files(); =cut use Moose; use Bio::SeqIO; use File::Path qw(make_path); use File::Basename; use File::Copy; use File::Temp qw/ tempfile /; use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; use Bio::Tools::GFF; with 'Bio::Roary::BedFromGFFRole'; has 'gff_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'group_names' => ( is => 'ro', isa => 'ArrayRef', required => 0 ); has 'output_directory' => ( is => 'ro', isa => 'Str', required => 1 ); has 'pan_reference_groups_seen' => ( is => 'rw', isa => 'HashRef', required => 1 ); has 'number_of_gff_files' => ( is => 'ro', isa => 'Int', required => 1 ); has 'pan_reference_filename' => ( is => 'ro', isa => 'Str',default => 'pan_genome_reference.fa' ); has 'dont_delete_files' => ( is => 'ro', isa => 'Bool',default => 0 ); has 'core_definition' => ( is => 'ro', isa => 'Num', default => 1.0 ); has 'annotate_groups' => ( is => 'ro', isa => 'Bio::Roary::AnnotateGroups', required => 1 ); has 'output_multifasta_files' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'fasta_file' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_fasta_file' ); has '_input_seqio' => ( is => 'ro', isa => 'Bio::SeqIO', lazy => 1, builder => '_build__input_seqio' ); has 'output_filename' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_output_filename' ); sub _build_output_filename { my ($self) = @_; my ( $filename, $directories, $suffix ) = fileparse($self->gff_file); return join('/',($self->output_directory, $filename.'.tmp_nuc_sequences.fa' )); } sub _build__input_seqio { my ($self) = @_; return Bio::SeqIO->new( -file => $self->fasta_file, -format => 'Fasta' ); } sub _bed_output_filename { my ($self) = @_; return join( '.', ( $self->output_filename, 'intermediate.bed' ) ); } sub populate_files { my ($self) = @_; while ( my $input_seq = $self->_input_seqio->next_seq() ) { if ( $self->annotate_groups->_ids_to_groups->{$input_seq->display_id} ) { my $current_group = $self->annotate_groups->_ids_to_groups->{$input_seq->display_id}; my $gene_name = $self->annotate_groups->_groups_to_consensus_gene_names->{$current_group}; if(! defined($self->pan_reference_groups_seen->{$current_group})) { my $pan_output_seq = $self->_pan_genome_reference_io_obj($current_group); $pan_output_seq->write_seq(Bio::Seq->new( -display_id => $input_seq->display_id, -desc => ($gene_name ? $gene_name : $current_group), -seq => $input_seq->seq ) ); $self->pan_reference_groups_seen->{$current_group} = 1; } my $number_of_genes = @{$self->annotate_groups->_groups_to_id_names->{$current_group}}; # Theres no need to align noncore files next if($self->dont_delete_files == 0 && $number_of_genes < ($self->core_definition * $self->number_of_gff_files )); my $output_seq = $self->_group_seq_io_obj($current_group,$number_of_genes); $output_seq->write_seq($input_seq); } } unlink($self->fasta_file); 1; } sub _group_file_name { my ($self,$group_name,$num_group_genes) = @_; my $annotated_group_name = $self->annotate_groups->_groups_to_consensus_gene_names->{$group_name}; $annotated_group_name =~ s!\W!_!gi; my $filename = $annotated_group_name.'.fa'; my $group_file_name = join('/',($self->output_directory, $filename )); return $group_file_name; } sub _pan_genome_reference_io_obj { my ($self) = @_; return Bio::SeqIO->new( -file => ">>".$self->pan_reference_filename, -format => 'Fasta' ); } sub _group_seq_io_obj { my ($self,$group_name,$num_group_genes) = @_; my $filename = $self->_group_file_name($group_name,$num_group_genes); return Bio::SeqIO->new( -file => ">>".$filename, -format => 'Fasta' ); } sub _extracted_nucleotide_fasta_file_from_bed_filename { my ($self) = @_; return join( '.', ( $self->output_filename, 'intermediate.extracted.fa' ) ); } sub _create_nucleotide_fasta_file_from_gff { my ($self) = @_; open(my $input_fh, $self->gff_file); open(my $output_fh, '>', $self->_nucleotide_fasta_file_from_gff_filename); my $at_sequence = 0; while(<$input_fh>) { my $line = $_; if($line =~/^>/) { $at_sequence = 1; } if($at_sequence == 1) { print {$output_fh} $line; } } close($input_fh); close($output_fh); } sub _nucleotide_fasta_file_from_gff_filename { my ($self) = @_; return join( '.', ( $self->output_filename, 'intermediate.fa' ) ); } sub _extract_nucleotide_regions { my ($self) = @_; $self->_create_nucleotide_fasta_file_from_gff; $self->_create_bed_file_from_gff; my $cmd = 'bedtools getfasta -s -fi ' . $self->_nucleotide_fasta_file_from_gff_filename . ' -bed ' . $self->_bed_output_filename . ' -fo ' . $self->_extracted_nucleotide_fasta_file_from_bed_filename . ' -name > /dev/null 2>&1'; system($cmd); unlink( $self->_nucleotide_fasta_file_from_gff_filename ); unlink( $self->_bed_output_filename ); unlink( $self->_nucleotide_fasta_file_from_gff_filename . '.fai' ); return $self->_extracted_nucleotide_fasta_file_from_bed_filename; } sub _cleanup_fasta { my ($self,$infile) = @_; my($fh, $outfile) = tempfile(); return unless ( -e $infile ); open( my $in, '<', $infile ); open( my $out, '>', $outfile ); while ( my $line = <$in> ) { chomp $line; $line =~ s/"//g if ( $line =~ /^>/ ); if($line =~ /^(>[^:]+)/) { $line = $1; } print $out "$line\n"; } close $in; close $out; move( $outfile, $infile); return $infile; } sub _build_fasta_file { my ($self) = @_; my $fasta_filename = $self->_extract_nucleotide_regions; return $self->_cleanup_fasta($fasta_filename); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/GroupsMultifastaProtein.pm000066400000000000000000000037401304207556500237140ustar00rootroot00000000000000package Bio::Roary::Output::GroupsMultifastaProtein; # ABSTRACT: Take a multifasta nucleotide file and output it as proteins. =head1 SYNOPSIS Take a multifasta nucleotide file and output it as proteins. use Bio::Roary::Output::GroupsMultifastaProtein; my $obj = Bio::Roary::Output::GroupsMultifastaProtein->new( nucleotide_fasta_file => 'example.fa' ); $obj->convert_nucleotide_to_protein(); =cut use Moose; use Bio::SeqIO; use File::Path qw(make_path); use File::Basename; use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; has 'nucleotide_fasta_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_output_filename' ); has '_suffix' => ( is => 'ro', isa => 'Str', default => '.faa' ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); sub _build_output_filename { my ($self) = @_; my ( $filename, $directories, $suffix ) = fileparse($self->nucleotide_fasta_file, qr/\.[^.]*/); return join('',($directories, $filename.$self->_suffix)); } # Read all the sequences for a gene into memory to sort them - very small files so shouldnt be a problem sub _fastatranslate { my ($self) = @_; my $input_fasta_file_obj = Bio::SeqIO->new(-file => $self->nucleotide_fasta_file, -format => 'Fasta' ); my $output_protein_file_obj = Bio::SeqIO->new(-file =>">".$self->output_filename, -format => 'Fasta', -alphabet => 'protein' ); my %protein_sequence_objs; while (my $seq = $input_fasta_file_obj->next_seq){ $protein_sequence_objs{$seq->display_id} = $seq->translate(-codontable_id => $self->translation_table ); } for my $sequence_name ( sort keys %protein_sequence_objs) { $output_protein_file_obj->write_seq($protein_sequence_objs{$sequence_name}); } return 1; } sub convert_nucleotide_to_protein { my ($self) = @_; $self->_fastatranslate(); 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/GroupsMultifastas.pm000066400000000000000000000026441304207556500225400ustar00rootroot00000000000000package Bio::Roary::Output::GroupsMultifastas; # ABSTRACT: Take in a list of groups and create multifastas files for each group =head1 SYNOPSIS Take in a list of groups and create multifastas files for each group use Bio::Roary::Output::GroupsMultifastas; my $obj = Bio::Roary::Output::GroupsMultifastas->new( group_names => ['aaa','bbb'], analyse_groups => $analyse_groups ); $obj->create_files(); =cut use Moose; use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; use Bio::Roary::Output::GroupMultifasta; has 'group_names' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'analyse_groups' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', required => 1 ); has 'output_filename_base' => ( is => 'ro', isa => 'Str', default => 'output_groups' ); sub create_files { my ($self) = @_; for my $group_name ( @{ $self->group_names } ) { # Check the group name exists next unless($self->analyse_groups->_groups_to_genes->{$group_name}); my $group_multifasta = Bio::Roary::Output::GroupMultifasta->new( group_name => $group_name, analyse_groups => $self->analyse_groups, output_filename_base => $self->output_filename_base ); $group_multifasta->create_file; } 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/GroupsMultifastasNucleotide.pm000066400000000000000000000062631304207556500245550ustar00rootroot00000000000000 package Bio::Roary::Output::GroupsMultifastasNucleotide; # ABSTRACT: Take in a set of GFF files and a groups file and output one multifasta file per group with nucleotide sequences. =head1 SYNOPSIS Take in a set of GFF files and a groups file and output one multifasta file per group with nucleotide sequences. use Bio::Roary::Output::GroupsMultifastasNucleotide; my $obj = Bio::Roary::Output::GroupsMultifastasNucleotide->new( group_names => ['aaa','bbb'], analyse_groups => $analyse_groups ); $obj->create_files(); =cut use Moose; use File::Path qw(make_path); use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; use Bio::Roary::Output::GroupsMultifastaNucleotide; has 'gff_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'group_names' => ( is => 'ro', isa => 'ArrayRef', required => 0 ); has 'annotate_groups' => ( is => 'ro', isa => 'Bio::Roary::AnnotateGroups', required => 1 ); has 'output_multifasta_files' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'core_definition' => ( is => 'ro', isa => 'Num', default => 1.0 ); has 'dont_delete_files' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'output_directory' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_output_directory'); has '_number_of_groups' => ( is => 'rw', isa => 'Num', lazy => 1, builder => '_build__number_of_groups' ); has 'group_limit' => ( is => 'rw', isa => 'Num', default => 50000 ); sub _build_output_directory { my ($self) = @_; my $output_directory = 'pan_genome_sequences'; return $output_directory; } sub _build__number_of_groups { my $self = shift; return $self->annotate_groups->_group_counter; } sub create_files { my ($self) = @_; my $num_groups = $self->_number_of_groups; my $limit = $self->group_limit; if ( $num_groups > $limit ){ print STDERR "Number of clusters ($num_groups) exceeds limit ($limit). Multifastas not created. Please check the spreadsheet for contamination from different species or increase the --group_limit parameter.\n"; return 0; } make_path($self->output_directory); unlink('pan_genome_reference.fa'); my $number_of_gff_files = @{$self->gff_files}; my %pan_reference_groups_seen; # if its output_multifasta_files == false then you want to create the core genome and delete all intermediate multifasta files for my $gff_file ( @{ $self->gff_files } ) { my $gff_multifasta = Bio::Roary::Output::GroupsMultifastaNucleotide->new( gff_file => $gff_file, group_names => $self->group_names, output_directory => $self->output_directory, annotate_groups => $self->annotate_groups, output_multifasta_files => $self->output_multifasta_files, pan_reference_groups_seen => \%pan_reference_groups_seen, core_definition => $self->core_definition, dont_delete_files => $self->dont_delete_files, number_of_gff_files => $number_of_gff_files ); $gff_multifasta->populate_files; } 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/NumberOfGroups.pm000066400000000000000000000110361304207556500217540ustar00rootroot00000000000000package Bio::Roary::Output::NumberOfGroups; # ABSTRACT: Create raw output files of group counts for turning into plots =head1 SYNOPSIS # ABSTRACT: Create raw output files of group counts for turning into plots use Bio::Roary::Output::NumberOfGroups; my $obj = Bio::Roary::Output::NumberOfGroups->new( group_statistics_obj => $group_stats ); $obj->create_files(); =cut use Moose; use List::Util qw(shuffle); use Bio::Roary::AnnotateGroups; use Bio::Roary::GroupStatistics; has 'group_statistics_obj' => ( is => 'ro', isa => 'Bio::Roary::GroupStatistics', required => 1 ); has 'number_of_iterations' => ( is => 'ro', isa => 'Int', default => 10); has 'groups_to_contigs' => ( is => 'ro', isa => 'Maybe[HashRef]' ); has 'annotate_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnnotateGroups', required => 1 ); has 'core_definition' => ( is => 'ro', isa => 'Num', default => 1.0 ); has 'output_raw_filename_conserved_genes' => ( is => 'ro', isa => 'Str', default => 'number_of_conserved_genes.Rtab' ); has 'output_raw_filename_unique_genes' => ( is => 'ro', isa => 'Str', default => 'number_of_unique_genes.Rtab' ); has 'output_raw_filename_total_genes' => ( is => 'ro', isa => 'Str', default => 'number_of_genes_in_pan_genome.Rtab' ); has 'output_raw_filename_new_genes' => ( is => 'ro', isa => 'Str', default => 'number_of_new_genes.Rtab' ); has '_conserved_genes' => ( is => 'ro', isa => 'ArrayRef', default => sub { [] } ); has '_unique_genes' => ( is => 'ro', isa => 'ArrayRef', default => sub { [] } ); has '_total_genes' => ( is => 'ro', isa => 'ArrayRef', default => sub { [] } ); has '_new_genes' => ( is => 'ro', isa => 'ArrayRef', default => sub { [] } ); sub create_output_files { my ($self) = @_; for ( my $i = 0 ; $i < $self->number_of_iterations ; $i++ ) { $self->_single_iteration_gene_expansion; } $self->_create_raw_output_file( $self->output_raw_filename_conserved_genes, $self->_conserved_genes ); $self->_create_raw_output_file( $self->output_raw_filename_unique_genes, $self->_unique_genes ); $self->_create_raw_output_file( $self->output_raw_filename_total_genes, $self->_total_genes ); $self->_create_raw_output_file( $self->output_raw_filename_new_genes, $self->_new_genes ); return 1; } sub _create_raw_output_file { my ( $self, $filename, $output_data ) = @_; open( my $fh, '>', $filename ); for my $iterations ( @{$output_data} ) { print {$fh} join( "\t", @{$iterations} ); print {$fh} "\n"; } close($fh); } sub _shuffle_input_files { my ($self) = @_; my @shuffled_input_files = shuffle( @{ $self->group_statistics_obj->_sorted_file_names } ); return \@shuffled_input_files; } sub _single_iteration_gene_expansion { my ($self) = @_; my %existing_groups; my @conserved_genes_added_per_file; my @unique_genes_added_per_file; my @total_genes_added_per_file; my @new_genes_added_per_file; my $shuffled_input_files = $self->_shuffle_input_files(); my $files_counter = 1; for my $input_file ( @{$shuffled_input_files} ) { my $unique_groups_counter = 0; my $total_groups_counter = 0; my $new_group_counter = 0; my $conserved_groups_counter = 0; my $new_groups = $self->group_statistics_obj->_files_to_groups->{$input_file}; for my $group ( @{$new_groups} ) { if ( !defined( $existing_groups{$group} ) ) { $new_group_counter++; } $existing_groups{$group}++; } for my $group ( keys %existing_groups ) { if ( $existing_groups{$group} >= ($files_counter*$self->core_definition) ) { $conserved_groups_counter++; } if ( $existing_groups{$group} == 1 ) { $unique_groups_counter++; } $total_groups_counter++; } push( @conserved_genes_added_per_file, $conserved_groups_counter ); push( @unique_genes_added_per_file, $unique_groups_counter ); push( @total_genes_added_per_file, $total_groups_counter ); push( @new_genes_added_per_file, $new_group_counter ); $files_counter++; } push( @{ $self->_conserved_genes }, \@conserved_genes_added_per_file ); push( @{ $self->_unique_genes }, \@unique_genes_added_per_file ); push( @{ $self->_total_genes }, \@total_genes_added_per_file ); push( @{ $self->_new_genes }, \@new_genes_added_per_file ); return; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/Output/QueryGroups.pm000066400000000000000000000110711304207556500213430ustar00rootroot00000000000000package Bio::Roary::Output::QueryGroups; # ABSTRACT: Output the groups of the union of a set of input isolates =head1 SYNOPSIS Output the groups of the union of a set of input isolates use Bio::Roary::Output::QueryGroups; my $obj = Bio::Roary::Output::QueryGroups->new( analyse_groups => $analyse_groups ); $obj->groups_union(); $obj->groups_intersection(); $obj->groups_complement(); =cut use Moose; use Bio::SeqIO; use Bio::Roary::Exceptions; use Bio::Roary::AnalyseGroups; use POSIX; has 'analyse_groups' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', required => 1 ); has 'input_filenames' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'output_union_filename' => ( is => 'ro', isa => 'Str', default => 'union_of_groups.gg' ); has 'output_intersection_filename' => ( is => 'ro', isa => 'Str', default => 'intersection_of_groups.gg' ); has 'output_complement_filename' => ( is => 'ro', isa => 'Str', default => 'complement_of_groups.gg' ); has 'core_definition' => ( is => 'ro', isa => 'Num', default => 1.0 ); has '_groups_freq' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build__groups_freq' ); has '_groups_intersection' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__groups_intersection' ); has '_groups_complement' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__groups_complement' ); has '_groups' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__groups' ); has '_number_of_isolates' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_builder__number_of_isolates' ); has '_min_no_isolates_for_core' => ( is => 'rw', isa => 'Int', lazy_build => 1 ); sub _build__min_no_isolates_for_core { my ( $self ) = @_; my $threshold = ceil( $self->_number_of_isolates * $self->core_definition ); return $threshold; } sub _builder__number_of_isolates { my ($self) = @_; return @{ $self->input_filenames }; } sub _build__groups_freq { my ($self) = @_; my %groups_freq; for my $filename ( @{ $self->input_filenames } ) { my $genes = $self->analyse_groups->_files_to_genes->{$filename}; my %file_groups_seen; for my $gene ( @{$genes} ) { next if(!defined($gene)); next if(!defined($self->analyse_groups->_genes_to_groups->{$gene})); next if(defined($file_groups_seen{$self->analyse_groups->_genes_to_groups->{$gene}})); push(@{$groups_freq{ $self->analyse_groups->_genes_to_groups->{$gene} }}, $gene); $file_groups_seen{$self->analyse_groups->_genes_to_groups->{$gene}} = 1; } } return \%groups_freq; } sub _build__groups { my ($self) = @_; my %groups_freq = %{ $self->_groups_freq }; my @groups = sort { @{$groups_freq{$b}} <=> @{$groups_freq{$a}} } keys %groups_freq; return \@groups; } sub _build__groups_intersection { my ($self) = @_; my @groups_intersection; for my $group ( @{$self->_groups} ) { if ( scalar @{$self->_groups_freq->{$group}} >= $self->_min_no_isolates_for_core ) { push( @groups_intersection, $group ); } } return \@groups_intersection; } sub _build__groups_complement { my ($self) = @_; my %groups_intersection = map { $_ => 1 } @{ $self->_groups_intersection }; my @complement = grep { not $groups_intersection{$_} } @{ $self->_groups }; return \@complement; } sub _print_out_groups { my ( $self, $filename, $groups ) = @_; open( my $fh, '>', $filename ) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => 'Couldnt write to file: ' . $filename ); my %groups_freq = %{ $self->_groups_freq }; my @sorted_groups = sort { @{$groups_freq{$b}} <=> @{$groups_freq{$a}} } @{$groups}; for my $group ( @sorted_groups ) { print {$fh} $group.': '.join("\t",@{$self->_groups_freq->{$group}}) . "\n"; } close($fh); return $self; } sub groups_complement { my ($self) = @_; $self->_print_out_groups( $self->output_complement_filename, $self->_groups_complement ); } sub groups_intersection { my ($self) = @_; $self->_print_out_groups( $self->output_intersection_filename, $self->_groups_intersection ); } sub groups_union { my ($self) = @_; $self->_print_out_groups( $self->output_union_filename, $self->_groups ); } sub groups_with_external_inputs { my ($self, $output_filename,$groups) = @_; $self->_print_out_groups( $output_filename, $groups ); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/ParallelAllAgainstAllBlast.pm000066400000000000000000000122261304207556500226540ustar00rootroot00000000000000package Bio::Roary::ParallelAllAgainstAllBlast; # ABSTRACT: Run all against all blast in parallel =head1 SYNOPSIS Run blastp in parallel over a FASTA file of proteins use Bio::Roary::ParallelAllAgainstAllBlast; my $obj = Bio::Roary::ParallelAllAgainstAllBlast->new( fasta_file => 'abc.fa', ); $obj->run(); =cut use Moose; use Bio::Roary::Exceptions; use Bio::Roary::ChunkFastaFile; use Bio::Roary::External::Makeblastdb; use Bio::Roary::External::Blastp; use Cwd; use File::Temp; use File::Basename; with 'Bio::Roary::JobRunner::Role'; has 'fasta_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'blast_results_file_name' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_blast_results_file_name' ); has 'makeblastdb_exec' => ( is => 'ro', isa => 'Str', default => 'makeblastdb' ); has 'blastp_exec' => ( is => 'ro', isa => 'Str', default => 'blastp' ); has 'segmasker_exec' => ( is => 'ro', isa => 'Str', default => 'segmasker' ); has 'perc_identity' => ( is => 'ro', isa => 'Num', default => 98 ); has '_chunk_fasta_file_obj' => ( is => 'ro', isa => 'Bio::Roary::ChunkFastaFile', lazy => 1, builder => '_build__chunk_fasta_file_obj' ); has '_sequence_file_names' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__sequence_file_names' ); has '_makeblastdb_obj' => ( is => 'ro', isa => 'Bio::Roary::External::Makeblastdb', lazy => 1, builder => '_build__makeblastdb_obj' ); has '_blast_database' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__blast_database' ); has 'cpus' => ( is => 'ro', isa => 'Int', default => 1 ); has '_working_directory' => ( is => 'ro', isa => 'File::Temp::Dir', default => sub { File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } ); has '_working_directory_name' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__working_directory_name' ); has 'memory_in_mb' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build_memory_in_mb' ); sub BUILD { my ($self) = @_; $self->_makeblastdb_obj(); } sub _build__blast_database { my ($self) = @_; return $self->_makeblastdb_obj->output_database; } sub _build__makeblastdb_obj { my ($self) = @_; my $blast_database = Bio::Roary::External::Makeblastdb->new( fasta_file => $self->fasta_file, exec => $self->makeblastdb_exec, job_runner => $self->job_runner, cpus => $self->cpus ); $blast_database->run(); return $blast_database; } sub _build__chunk_fasta_file_obj { my ($self) = @_; return Bio::Roary::ChunkFastaFile->new( fasta_file => $self->fasta_file, ); } sub _build__sequence_file_names { my ($self) = @_; return $self->_chunk_fasta_file_obj->sequence_file_names; } sub _build__working_directory_name { my ($self) = @_; return $self->_working_directory->dirname(); } sub _build_blast_results_file_name { my ($self) = @_; return join( '/', ( $self->_working_directory_name, 'blast_results' ) ); } sub _combine_blast_results { my ( $self, $output_files ) = @_; for my $output_file ( @{$output_files} ) { Bio::Roary::Exceptions::FileNotFound->throw( error => "Cant find blast results: " . $output_file ) unless ( -e $output_file ); } if ( -e $self->blast_results_file_name ) { system( "rm " . $self->blast_results_file_name ); } system( "touch " . $self->blast_results_file_name ); for my $output_file ( @{$output_files} ) { system( "cat $output_file >> " . $self->blast_results_file_name ); } return 1; } sub _build_memory_in_mb { my ($self) = @_; my $filename = $self->fasta_file; my $file_size = 3000; if(-e $filename) { $file_size = -s $filename; $file_size *=12; $file_size = int($file_size/1000000); $file_size = 3000 if($file_size < 3000); } return $file_size; } sub run { my ($self) = @_; my @expected_output_files; my @commands_to_run; for my $filename ( @{ $self->_sequence_file_names } ) { my ( $filename_without_directory, $directories, $suffix ) = fileparse($filename); my $output_seq_results_file = join( '/', ( $self->_working_directory_name, $filename_without_directory . '.out' ) ); my $blast_database = Bio::Roary::External::Blastp->new( fasta_file => $filename, blast_database => $self->_blast_database, exec => $self->blastp_exec, output_file => $output_seq_results_file, perc_identity => $self->perc_identity ); push( @expected_output_files, $output_seq_results_file ); push( @commands_to_run, $blast_database->_command_to_run() ); $self->logger->info( "Running command: " . $blast_database->_command_to_run() ); } my $job_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->memory_in_mb, queue => $self->_queue, cpus => $self->cpus ); $job_runner_obj->run(); $self->logger->info( "Combining blast results" ); $self->_combine_blast_results(\@expected_output_files); return 1; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/ParseGFFAnnotationRole.pm000066400000000000000000000016511304207556500220130ustar00rootroot00000000000000package Bio::Roary::ParseGFFAnnotationRole; # ABSTRACT: A role for parsing a gff file efficiently =head1 SYNOPSIS with 'Bio::Roary::ParseGFFAnnotationRole'; =cut use Moose::Role; use Bio::Tools::GFF; has 'gff_file' => ( is => 'ro', isa => 'Str', required => 1 ); has '_tags_to_filter' => ( is => 'ro', isa => 'Str', default => '(CDS|ncRNA|tRNA|tmRNA|rRNA)' ); has '_gff_parser' => ( is => 'ro', isa => 'Bio::Tools::GFF', lazy => 1, builder => '_build__gff_parser' ); has '_awk_filter' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__awk_filter' ); sub _gff_fh_input_string { my ($self) = @_; return 'sed -n \'/##gff-version 3/,/^>/p\' '.$self->gff_file.'| grep -v \'^>\''." | " . $self->_awk_filter; } sub _build__awk_filter { my ($self) = @_; return 'awk \'BEGIN {FS="\t"};{ if ($3 ~/' . $self->_tags_to_filter . '/) print $9;}\' '; } 1; Roary-3.8.0/lib/Bio/Roary/PostAnalysis.pm000066400000000000000000000353311304207556500201740ustar00rootroot00000000000000package Bio::Roary::PostAnalysis; # ABSTRACT: Post analysis of pan genomes =head1 SYNOPSIS Create a pan genome =cut use Moose; use File::Copy; use Bio::Roary::InflateClusters; use Bio::Roary::AnalyseGroups; use Bio::Roary::GroupLabels; use Bio::Roary::AnnotateGroups; use Bio::Roary::GroupStatistics; use Bio::Roary::Output::GroupsMultifastasNucleotide; use Bio::Roary::Output::NumberOfGroups; use Bio::Roary::OrderGenes; use Bio::Roary::Output::EmblGroups; use Bio::Roary::SplitGroups; use Bio::Roary::AccessoryBinaryFasta; use Bio::Roary::External::Fasttree; use Bio::Roary::AccessoryClustering; use Bio::Roary::AssemblyStatistics; use Log::Log4perl qw(:easy); has 'fasta_files' => ( is => 'rw', isa => 'ArrayRef', required => 1 ); has 'input_files' => ( is => 'rw', isa => 'ArrayRef', required => 1 ); has 'output_filename' => ( is => 'rw', isa => 'Str', default => 'clustered_proteins' ); has 'output_pan_geneome_filename' => ( is => 'rw', isa => 'Str', default => 'pan_genome.fa' ); has 'output_statistics_filename' => ( is => 'rw', isa => 'Str', default => 'gene_presence_absence.csv' ); has 'output_multifasta_files' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'verbose_stats' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has 'cpus' => ( is => 'ro', isa => 'Int', default => 1 ); has 'clusters_filename' => ( is => 'rw', isa => 'Str', required => 1 ); has 'dont_delete_files' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'dont_split_groups' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'dont_create_rplots' => ( is => 'rw', isa => 'Bool', default => 1 ); has 'group_limit' => ( is => 'rw', isa => 'Num', default => 50000 ); has '_output_mcl_filename' => ( is => 'ro', isa => 'Str', default => '_uninflated_mcl_groups' ); has '_output_inflate_unsplit_clusters_filename' => ( is => 'ro', isa => 'Str', default => '_inflated_unsplit_mcl_groups' ); has '_output_inflate_clusters_filename' => ( is => 'ro', isa => 'Str', default => '_inflated_mcl_groups' ); has '_output_group_labels_filename' => ( is => 'ro', isa => 'Str', default => '_labeled_mcl_groups' ); has '_output_combined_filename' => ( is => 'ro', isa => 'Str', default => '_combined_files' ); has '_input_cd_hit_groups_file' => ( is => 'ro', isa => 'Str', default => '_combined_files.groups' ); has 'core_accessory_tab_output_filename' => ( is => 'ro', isa => 'Str', default => 'core_accessory.tab' ); has 'accessory_tab_output_filename' => ( is => 'ro', isa => 'Str', default => 'accessory.tab' ); has 'core_accessory_ordering_key' => ( is => 'ro', isa => 'Str', default => 'core_accessory_overall_order_filtered' ); has 'accessory_ordering_key' => ( is => 'ro', isa => 'Str', default => 'accessory_overall_order_filtered' ); has 'core_definition' => ( is => 'ro', isa => 'Num', default => 1.0 ); has 'pan_genome_reference_filename' => ( is => 'ro', isa => 'Str', default => 'pan_genome_reference.fa' ); has '_inflate_clusters_obj' => ( is => 'ro', isa => 'Bio::Roary::InflateClusters', lazy => 1, builder => '_build__inflate_clusters_obj' ); has '_group_labels_obj' => ( is => 'ro', isa => 'Bio::Roary::GroupLabels', lazy => 1, builder => '_build__group_labels_obj' ); has '_annotate_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnnotateGroups', lazy => 1, builder => '_build__annotate_groups_obj' ); has '_analyse_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', lazy => 1, builder => '_build__analyse_groups_obj' ); has '_order_genes_obj' => ( is => 'ro', isa => 'Bio::Roary::OrderGenes', lazy => 1, builder => '_build__order_genes_obj' ); has '_group_statistics_obj' => ( is => 'ro', isa => 'Bio::Roary::GroupStatistics', lazy => 1, builder => '_build__group_statistics_obj' ); has '_number_of_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::Output::NumberOfGroups', lazy => 1, builder => '_build__number_of_groups_obj' ); has '_accessory_binary_fasta' => ( is => 'ro', isa => 'Bio::Roary::AccessoryBinaryFasta', lazy => 1, builder => '_build__accessory_binary_fasta' ); has '_groups_multifastas_nuc_obj' => ( is => 'ro', isa => 'Bio::Roary::Output::GroupsMultifastasNucleotide', lazy => 1, builder => '_build__groups_multifastas_nuc_obj' ); has '_split_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::SplitGroups', lazy => 1, builder => '_build__split_groups_obj' ); has '_accessory_binary_tree' => ( is => 'ro', isa => 'Bio::Roary::External::Fasttree', lazy => 1, builder => '_build__accessory_binary_tree' ); has '_accessory_clustering' => ( is => 'ro', isa => 'Maybe[Bio::Roary::AccessoryClustering]', lazy => 1, builder => '_build__accessory_clustering' ); has '_assembly_statistics' => ( is => 'ro', isa => 'Bio::Roary::AssemblyStatistics', lazy => 1, builder => '_build__assembly_statistics' ); has 'logger' => ( is => 'ro', lazy => 1, builder => '_build_logger' ); sub _build_logger { my ($self) = @_; Log::Log4perl->easy_init( level => $ERROR ); my $logger = get_logger(); return $logger; } sub run { my ($self) = @_; $self->logger->info("Reinflate clusters"); $self->_inflate_clusters_obj->inflate(); $self->logger->info("Split groups with paralogs"); ## SPLIT GROUPS WITH PARALOGS ## if ( $self->dont_split_groups ) { move( $self->_output_inflate_unsplit_clusters_filename, $self->_output_inflate_clusters_filename ); } else { $self->_split_groups_obj->split_groups; } $self->logger->info("Labelling the groups"); $self->_group_labels_obj->add_labels(); $self->logger->info("Transfering the annotation to the groups"); $self->_annotate_groups_obj->reannotate; $self->logger->info("Creating accessory binary gene presence and absence fasta"); $self->_accessory_binary_fasta->create_accessory_binary_fasta; $self->logger->info("Creating accessory binary gene presence and absence tree"); $self->_accessory_binary_tree->run; $self->logger->info("Creating accessory gene presence and absence clusters"); if ( $self->_accessory_clustering ) { $self->_accessory_clustering->sample_weights; } $self->logger->info("Creating the spreadsheet with gene presence and absence"); $self->_group_statistics_obj->create_spreadsheet; $self->_group_statistics_obj->create_rtab; $self->logger->info("Creating summary statistics of the spreadsheet"); $self->_assembly_statistics->create_summary_output; $self->logger->info("Creating tab files for R"); $self->_number_of_groups_obj->create_output_files; system("create_pan_genome_plots.R") unless ( $self->dont_create_rplots == 1 ); $self->logger->info("Create EMBL files"); $self->_create_embl_files; my $clusters_not_exceeded = 1; if ( $self->output_multifasta_files ) { $self->logger->info("Creating files with the nucleotide sequences for every cluster"); $clusters_not_exceeded = $self->_groups_multifastas_nuc_obj->create_files(); } $self->_delete_intermediate_files; if ( $clusters_not_exceeded == 0 && $self->output_multifasta_files ) { $self->logger->error("Exiting early because number of clusters is too high"); exit(); } } sub _build__assembly_statistics { my ($self) = @_; return Bio::Roary::AssemblyStatistics->new( spreadsheet => $self->_group_statistics_obj->output_filename, core_definition => $self->core_definition, logger => $self->logger ); } sub _build__accessory_clustering { my ($self) = @_; if ( ( -e $self->_accessory_binary_fasta->output_filename ) && ( -s $self->_accessory_binary_fasta->output_filename > 5 ) ) { $self->logger->info( $self->_accessory_binary_fasta->output_filename ); return Bio::Roary::AccessoryClustering->new( input_file => $self->_accessory_binary_fasta->output_filename, cpus => $self->cpus, logger => $self->logger ); } else { $self->logger->info("Theres no accessory binary file so skipping accessory binary clustering"); return undef; } } sub _build__accessory_binary_tree { my ($self) = @_; return Bio::Roary::External::Fasttree->new( input_file => $self->_accessory_binary_fasta->output_filename, verbose => $self->verbose, logger => $self->logger ); } sub _build__accessory_binary_fasta { my ($self) = @_; return Bio::Roary::AccessoryBinaryFasta->new( input_files => $self->fasta_files, annotate_groups_obj => $self->_annotate_groups_obj, analyse_groups_obj => $self->_analyse_groups_obj, logger => $self->logger ); } sub _build__split_groups_obj { my ($self) = @_; return Bio::Roary::SplitGroups->new( groupfile => $self->_output_inflate_unsplit_clusters_filename, gff_files => $self->input_files, fasta_files => $self->fasta_files, outfile => $self->_output_inflate_clusters_filename, dont_delete => $self->dont_delete_files, logger => $self->logger ); } sub _build__number_of_groups_obj { my ($self) = @_; return Bio::Roary::Output::NumberOfGroups->new( group_statistics_obj => $self->_group_statistics_obj, groups_to_contigs => $self->_order_genes_obj->groups_to_contigs, annotate_groups_obj => $self->_annotate_groups_obj, core_definition => $self->core_definition, logger => $self->logger ); } sub _build__group_statistics_obj { my ($self) = @_; return Bio::Roary::GroupStatistics->new( output_filename => $self->output_statistics_filename, annotate_groups_obj => $self->_annotate_groups_obj, analyse_groups_obj => $self->_analyse_groups_obj, groups_to_contigs => $self->_order_genes_obj->groups_to_contigs, _verbose => $self->verbose_stats, logger => $self->logger ); } sub _build__order_genes_obj { my ($self) = @_; if ( defined( $self->_accessory_clustering ) ) { return Bio::Roary::OrderGenes->new( analyse_groups_obj => $self->_analyse_groups_obj, gff_files => $self->input_files, core_definition => $self->core_definition, sample_weights => $self->_accessory_clustering->sample_weights, samples_to_clusters => $self->_accessory_clustering->samples_to_clusters, logger => $self->logger ); } else { return Bio::Roary::OrderGenes->new( analyse_groups_obj => $self->_analyse_groups_obj, gff_files => $self->input_files, core_definition => $self->core_definition, logger => $self->logger ); } } sub _build__group_labels_obj { my ($self) = @_; return Bio::Roary::GroupLabels->new( groups_filename => $self->_output_inflate_clusters_filename, output_filename => $self->_output_group_labels_filename, logger => $self->logger ); } sub _build__annotate_groups_obj { my ($self) = @_; return Bio::Roary::AnnotateGroups->new( gff_files => $self->input_files, output_filename => $self->output_filename, groups_filename => $self->_output_group_labels_filename, logger => $self->logger ); } sub _build__analyse_groups_obj { my ($self) = @_; return Bio::Roary::AnalyseGroups->new( fasta_files => $self->fasta_files, groups_filename => $self->output_filename, logger => $self->logger ); } sub _build__inflate_clusters_obj { my ($self) = @_; return Bio::Roary::InflateClusters->new( clusters_filename => $self->clusters_filename, cdhit_groups_filename => $self->_input_cd_hit_groups_file, mcl_filename => $self->_output_mcl_filename, output_file => $self->_output_inflate_unsplit_clusters_filename, logger => $self->logger ); } sub _build__groups_multifastas_nuc_obj { my ($self) = @_; return Bio::Roary::Output::GroupsMultifastasNucleotide->new( output_multifasta_files => $self->output_multifasta_files, gff_files => $self->input_files, annotate_groups => $self->_annotate_groups_obj, group_names => $self->_analyse_groups_obj->_groups, group_limit => $self->group_limit, core_definition => $self->core_definition, dont_delete_files => $self->dont_delete_files, logger => $self->logger ); } sub _create_embl_files { my ($self) = @_; my $core_accessory_tab_obj = Bio::Roary::Output::EmblGroups->new( output_filename => $self->core_accessory_tab_output_filename, annotate_groups_obj => $self->_annotate_groups_obj, analyse_groups_obj => $self->_analyse_groups_obj, ordering_key => $self->core_accessory_ordering_key, groups_to_contigs => $self->_order_genes_obj->groups_to_contigs, logger => $self->logger ); $core_accessory_tab_obj->create_files; my $accessory_tab_obj = Bio::Roary::Output::EmblGroups->new( output_filename => $self->accessory_tab_output_filename, annotate_groups_obj => $self->_annotate_groups_obj, analyse_groups_obj => $self->_analyse_groups_obj, ordering_key => $self->accessory_ordering_key, groups_to_contigs => $self->_order_genes_obj->groups_to_contigs, logger => $self->logger ); $accessory_tab_obj->create_files; } sub _delete_intermediate_files { my ($self) = @_; return if ( $self->dont_delete_files == 1 ); $self->logger->info("Cleaning up files"); for my $fasta_file ( @{ $self->fasta_files } ) { unlink($fasta_file) if ( -e $fasta_file ); } unlink( $self->_output_mcl_filename ); unlink( $self->_output_inflate_clusters_filename ); unlink( $self->_output_group_labels_filename ); unlink( $self->_output_combined_filename ); unlink( $self->clusters_filename ); unlink( $self->clusters_filename . '.clstr' ); unlink( $self->clusters_filename . '.bak.clstr' ); unlink('_gff_files'); unlink('_fasta_files'); unlink('_clustered_filtered.fa'); unlink( $self->_input_cd_hit_groups_file ); unlink('database_masking.asnb'); unlink('_clustered'); unlink('_accessory_clusters'); unlink('_accessory_clusters.clstr'); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/PrepareInputFiles.pm000066400000000000000000000103451304207556500211420ustar00rootroot00000000000000package Bio::Roary::PrepareInputFiles; # ABSTRACT: Take in a mixture of FASTA and GFF input files and output FASTA proteomes only =head1 SYNOPSIS Take in a mixture of FASTA and GFF input files and output FASTA proteomes only use Bio::Roary::PrepareInputFiles; my $obj = Bio::Roary::PrepareInputFiles->new( input_files => ['abc.gff','ddd.faa'], ); $obj->fasta_files; =cut use Moose; use Bio::Roary::Exceptions; use Bio::Roary::ExtractProteomeFromGFFs; use Bio::Roary::FilterUnknownsFromFasta; use Cwd qw(getcwd); use File::Temp; has 'input_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'job_runner' => ( is => 'ro', isa => 'Str', default => 'Local' ); has 'cpus' => ( is => 'ro', isa => 'Int', default => 1 ); has '_input_gff_files' => ( is => 'ro', isa => 'Maybe[ArrayRef]', lazy => 1, builder => '_build__input_gff_files' ); has '_input_fasta_files' => ( is => 'ro', isa => 'Maybe[ArrayRef]', lazy => 1, builder => '_build__input_fasta_files' ); has '_input_fasta_files_filtered' => ( is => 'ro', isa => 'Maybe[ArrayRef]', lazy => 1, builder => '_build__input_fasta_files_filtered' ); has '_input_fasta_files_filtered_obj' => ( is => 'ro', isa => 'Bio::Roary::FilterUnknownsFromFasta', lazy => 1, builder => '_build__input_fasta_files_filtered_obj' ); has '_derived_fasta_files' => ( is => 'ro', isa => 'Maybe[ArrayRef]', lazy => 1, builder => '_build__derived_fasta_files' ); has '_extract_proteome_obj' => ( is => 'ro', isa => 'Bio::Roary::ExtractProteomeFromGFFs', lazy => 1, builder => '_build__extract_proteome_obj' ); has 'apply_unknowns_filter' => ( is => 'rw', isa => 'Bool', default => 1 ); has 'translation_table' => ( is => 'rw', isa => 'Int', default => 11 ); has 'verbose' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_fasta_filter_obj' => ( is => 'ro', isa => 'Bio::Roary::FilterUnknowsFromFasta', lazy => 1, builder => '_fasta_filter_obj' ); has 'working_directory' => ( is => 'ro', isa => 'File::Temp::Dir', default => sub { File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } ); sub _build__input_gff_files { my ($self) = @_; my @gff_files = grep( /\.gff$/, @{ $self->input_files } ); return \@gff_files; } sub _build__input_fasta_files { my ($self) = @_; my @fasta_files = grep( !/\.gff$/, @{ $self->input_files } ); return \@fasta_files; } sub _build__input_fasta_files_filtered_obj { my ($self) = @_; return Bio::Roary::FilterUnknownsFromFasta->new( fasta_files => $self->_input_fasta_files ); } sub _build__input_fasta_files_filtered { my ($self) = @_; return undef if ( !defined( $self->_input_fasta_files ) ); return $self->_input_fasta_files_filtered_obj->filtered_fasta_files(); } sub _build__extract_proteome_obj { my ($self) = @_; return Bio::Roary::ExtractProteomeFromGFFs->new( gff_files => $self->_input_gff_files, job_runner => $self->job_runner, apply_unknowns_filter => $self->apply_unknowns_filter, translation_table => $self->translation_table, cpus => $self->cpus, verbose => $self->verbose, working_directory => $self->working_directory, ); } sub _build__derived_fasta_files { my ($self) = @_; return undef if ( !defined( $self->_input_gff_files ) ); return $self->_extract_proteome_obj->fasta_files(); } sub fasta_files { my ($self) = @_; my @output_fasta_files = ( @{ $self->_input_fasta_files_filtered }, @{ $self->_derived_fasta_files } ); return \@output_fasta_files; } sub lookup_fasta_files_from_unknown_input_files { my ( $self, $input_files ) = @_; $self->fasta_files; my @output_fasta_files; for my $input_file ( @{$input_files} ) { if ( defined( $self->_extract_proteome_obj->fasta_files_to_gff_files->{$input_file} ) ) { push( @output_fasta_files, $self->_extract_proteome_obj->fasta_files_to_gff_files->{$input_file} ); } else { push( @output_fasta_files, $self->_input_fasta_files_filtered_obj->input_fasta_to_output_fasta->{$input_file} ); } } return \@output_fasta_files; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/PresenceAbsenceMatrix.pm000066400000000000000000000060121304207556500217470ustar00rootroot00000000000000package Bio::Roary::PresenceAbsenceMatrix; # ABSTRACT: Create a matrix with presence and absence =head1 SYNOPSIS Create a matrix with presence and absence. Since its computationally intensive to generate the inputs, calculate them once in the GroupStatistics module and pass them through. use Bio::Roary::PresenceAbsenceMatrix; my $obj = Bio::Roary::PresenceAbsenceMatrix->new( annotate_groups_obj => $annotate_groups_obj, output_filename => 'gene_presence_absence.Rtab', sorted_file_names => $sorted_file_names, groups_to_files => $groups_to_files, num_files_in_groups => $num_files_in_groups, sample_headers => $sample_headers, ); $obj->create_matrix_file; =cut use Moose; use Text::CSV; use Bio::SeqIO; use Bio::Roary::Exceptions; use Bio::Roary::AnnotateGroups; has 'annotate_groups_obj' => ( is => 'ro', isa => 'Bio::Roary::AnnotateGroups', required => 1 ); has 'sorted_file_names' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'groups_to_files' => ( is => 'ro', isa => 'HashRef', required => 1 ); has 'num_files_in_groups' => ( is => 'ro', isa => 'HashRef', required => 1 ); has 'sample_headers' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'gene_presence_absence.Rtab' ); has '_output_fh' => ( is => 'ro', lazy => 1, builder => '_build__output_fh' ); has '_text_csv_obj' => ( is => 'ro', isa => 'Text::CSV', lazy => 1, builder => '_build__text_csv_obj' ); sub _build__output_fh { my ($self) = @_; open( my $fh, '>', $self->output_filename ) or Bio::Roary::Exceptions::CouldntWriteToFile->throw( error => "Couldnt write output file:" . $self->output_filename ); return $fh; } sub _build__text_csv_obj { my ($self) = @_; return Text::CSV->new( { binary => 1, always_quote => 0, sep_char => "\t", eol => "\r\n" } ); } sub create_matrix_file { my ($self) = @_; # Header row unshift @{ $self->sample_headers }, 'Gene'; $self->_text_csv_obj->print( $self->_output_fh, $self->sample_headers ); for my $group ( sort { $self->num_files_in_groups->{$b} <=> $self->num_files_in_groups->{$a} || $a cmp $b } keys %{ $self->num_files_in_groups } ) { my @row; my $annotated_group_name = $self->annotate_groups_obj->_groups_to_consensus_gene_names->{$group}; push( @row, $annotated_group_name ); for my $filename ( @{ $self->sorted_file_names } ) { my $group_to_file_genes = $self->groups_to_files->{$group}->{$filename}; if ( defined($group_to_file_genes) && @{$group_to_file_genes} > 0 ) { push( @row, 1 ); next; } else { push( @row, 0 ); } } $self->_text_csv_obj->print( $self->_output_fh, \@row ); } close( $self->_output_fh ); return $self; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/QC/000077500000000000000000000000001304207556500155035ustar00rootroot00000000000000Roary-3.8.0/lib/Bio/Roary/QC/Report.pm000066400000000000000000000142511304207556500173170ustar00rootroot00000000000000package Bio::Roary::QC::Report; # ABSTRACT: generate a report based on kraken output =head1 SYNOPSIS =cut use Moose; use File::Temp; use File::Path 'rmtree'; use Cwd; use File::Basename; with 'Bio::Roary::JobRunner::Role'; has 'input_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'kraken_exec' => ( is => 'ro', isa => 'Str', default => 'kraken' ); has 'kraken_report_exec' => ( is => 'ro', isa => 'Str', default => 'kraken-report' ); has 'kraken_db' => ( is => 'ro', isa => 'Str', required => 1 ); has 'outfile' => ( is => 'rw', isa => 'Str', default => 'qc_report.csv' ); has '_kraken_data' => ( is => 'rw', isa => 'ArrayRef', lazy_build => 1 ); has '_header' => ( is => 'rw', isa => 'Str', lazy_build => 1 ); has 'kraken_memory' => ( is => 'rw', isa => 'Int', default => 2000 ); has '_tmp_directory_obj' => ( is => 'rw', lazy_build => 1 ); has '_tmp_directory' => ( is => 'rw', lazy_build => 1, isa => 'Str', ); sub _nuc_fasta_filename { my ($self, $gff) = @_; my $prefix = basename( $gff, ".gff" ); my $outfile = $self->_tmp_directory . "/$prefix.fna"; return $outfile; } sub _extract_nuc_fasta_cmd { my ($self, $gff) = @_; my $outfile = $self->_nuc_fasta_filename($gff); my $cmd = "sed -n '/##FASTA/,//p' $gff | grep -v \'##FASTA\' > $outfile"; return $cmd; } sub _extract_nuc_files_from_all_gffs { my ($self) = @_; my @nuc_files; my @commands_to_run; for my $input_file(@{$self->input_files}) { push(@nuc_files,$self->_nuc_fasta_filename($input_file)); push(@commands_to_run,$self->_extract_nuc_fasta_cmd($input_file)); } my $kraken_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->kraken_memory, verbose => $self->verbose, cpus => $self->cpus ); $kraken_runner_obj->run(); return \@nuc_files; } sub _kraken_cmd { my ( $self, $a, $kraken_output ) = @_; my $kcmd = $self->kraken_exec . " --fasta-input ". " --preload ". " --db " . $self->kraken_db . " --output $kraken_output $a > /dev/null 2>&1"; return $kcmd; } sub _kraken_report_cmd { my ( $self, $k, $report_output ) = @_; my $krcmd = $self->kraken_report_exec . " --db " . $self->kraken_db . " $k > $report_output"; return $krcmd; } sub _kraken_output_filename { my ( $self, $assembly ) = @_; my $kraken_output = $assembly; $kraken_output =~ s/fna$/kraken/; return $kraken_output; } sub _run_kraken_on_nuc_files { my ( $self, $nuc_files ) = @_; my @kraken_output_files; my @commands_to_run; for my $nuc_file(@{$nuc_files}) { my $kraken_output = $self->_kraken_output_filename($nuc_file); push(@kraken_output_files, $kraken_output ); push(@commands_to_run, $self->_kraken_cmd( $nuc_file, $kraken_output )); } my $kraken_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->kraken_memory, verbose => $self->verbose, cpus => $self->cpus ); $kraken_runner_obj->run(); for my $filename(@{$nuc_files}) { unlink($filename); } return \@kraken_output_files; } sub _kraken_report_output_filename { my ( $self, $assembly ) = @_; return $assembly.".report"; } sub _run_kraken_report_on_kraken_files { my ( $self, $kraken_files ) = @_; my @kraken_report_output_files; my @commands_to_run; for my $nuc_file(@{$kraken_files}) { my $kraken_output = $self->_kraken_report_output_filename($nuc_file); push(@kraken_report_output_files, $kraken_output ); push(@commands_to_run, $self->_kraken_report_cmd( $nuc_file, $kraken_output )); } my $kraken_runner_obj = $self->_job_runner_class->new( commands_to_run => \@commands_to_run, memory_in_mb => $self->kraken_memory, verbose => $self->verbose, cpus => $self->cpus ); $kraken_runner_obj->run(); for my $filename(@{$kraken_files}) { unlink($filename); } return \@kraken_report_output_files; } sub _build__kraken_data { my $self = shift; my $nuc_files = $self->_extract_nuc_files_from_all_gffs(); my $kraken_files = $self->_run_kraken_on_nuc_files($nuc_files); my $kraken_report_files = $self->_run_kraken_report_on_kraken_files( $kraken_files ); return $self->_parse_kraken_reports($kraken_report_files); } sub _parse_kraken_reports { my ( $self, $kraken_report_files ) = @_; my @report_rows; for my $kraken_report(@{$kraken_report_files}) { push(@report_rows, $self->_parse_kraken_report($kraken_report)); } for my $kraken_report(@{$kraken_report_files}) { unlink($kraken_report); } return \@report_rows; } sub _parse_kraken_report { my ( $self, $kraken_report ) = @_; # parse report open( my $report_fh, '<', $kraken_report ); my $sample_name = $kraken_report; $sample_name =~ s/.report$//; $sample_name =~ s/.kraken$//; my($sample_base_name, $dirs, $suffix) = fileparse($sample_name); my ( $top_genus, $top_species ); while ( <$report_fh> ){ my @parts = split( "\t" ); chomp @parts; $top_genus = $parts[5] if ( (! defined $top_genus) && $parts[3] eq 'G' ); $top_species = $parts[5] if ( (! defined $top_species) && $parts[3] eq 'S' ); last if (defined $top_genus && defined $top_species); } close($report_fh); $top_genus ||= "not_found"; $top_genus =~ s/^\s+//g; $top_species ||= "not_found"; $top_species =~ s/^\s+//g; return [ $sample_base_name, $top_genus, $top_species ]; } sub _build__header { return join( ',', ( 'Sample', 'Genus', 'Species' ) ); } sub _build__tmp_directory_obj { return File::Temp->newdir(DIR => getcwd, CLEANUP => 1 ); } sub _build__tmp_directory { my $self = shift; return $self->_tmp_directory_obj->dirname(); } sub report { my $self = shift; open( OUTFILE, '>', $self->outfile ); print OUTFILE $self->_header . "\n"; for my $line ( @{ $self->_kraken_data } ){ print OUTFILE join( ',', @{ $line } ) . "\n"; } close OUTFILE; } __PACKAGE__->meta->make_immutable; no Moose; 1; Roary-3.8.0/lib/Bio/Roary/ReformatInputGFFs.pm000066400000000000000000000121361304207556500210460ustar00rootroot00000000000000package Bio::Roary::ReformatInputGFFs; # ABSTRACT: Take in gff files and add suffix where a gene id is seen twice =head1 SYNOPSIS Take in gff files and add suffix where a gene id is seen twice use Bio::Roary::ReformatInputGFFs; my $obj = Bio::Roary::PrepareInputFiles->new( gff_files => ['abc.gff','ddd.faa'], ); $obj->fix_duplicate_gene_ids; $obj->fixed_gff_files; =cut use Moose; use Bio::Roary::Exceptions; use Cwd; use Log::Log4perl qw(:easy); use Bio::Tools::GFF; use File::Path qw(make_path); use File::Basename; has 'gff_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'logger' => ( is => 'ro', lazy => 1, builder => '_build_logger' ); has '_tags_to_filter' => ( is => 'ro', isa => 'Str', default => '(CDS|ncRNA|tRNA|tmRNA|rRNA)' ); has 'output_directory' => ( is => 'ro', isa => 'Str', default => 'fixed_input_files' ); has 'suffix_counter' => ( is => 'rw', isa => 'Int', default => 1 ); has 'fixed_gff_files' => ( is => 'rw', isa => 'ArrayRef', default => sub { [] } ); sub _build_logger { my ($self) = @_; Log::Log4perl->easy_init( $ERROR ); my $logger = get_logger(); return $logger; } sub fix_duplicate_gene_ids { my ($self) = @_; my %gene_ids_seen_before; for my $file ( @{ $self->gff_files } ) { my $ids_seen = 0; my $ids_from_file = $self->_get_ids_for_gff_file($file); if ( @{$ids_from_file} < 1 ) { $self->logger->warn( "Input GFF file doesnt contain annotation we can use so excluding it from the analysis: $file" ); } else { for my $gene_id ( @{$ids_from_file} ) { if ( $gene_ids_seen_before{$gene_id} ) { $self->logger->warn( "Input file contains duplicate gene IDs, attempting to fix by adding a unique suffix. New GFF in the fixed_input_files directory. $file " ); my $updated_file = $self->_add_suffix_to_gene_ids_and_return_new_file($file); push( @{ $self->fixed_gff_files }, $updated_file ) if ( defined($updated_file) ); $ids_seen = 1; last; } $gene_ids_seen_before{$gene_id}++; } if ( $ids_seen == 0 ) { push( @{ $self->fixed_gff_files }, $file ); } } } return 1; } sub _add_suffix_to_gene_ids_and_return_new_file { my ( $self, $input_file ) = @_; my ( $filename, $directories, $suffix ) = fileparse( $input_file, qr/\.[^.]*/ ); make_path( $self->output_directory ) if ( !( -d $self->output_directory ) ); my $output_file = $self->output_directory . '/' . $filename . $suffix; open( my $input_gff_fh, $input_file ); open( my $out_gff_fh, '>', $output_file ); my $found_fasta = 0; while (<$input_gff_fh>) { my $line = $_; if ( $line =~ /^\#\#FASTA/ ) { $found_fasta = 1; } if ( $line =~ /\#/ || $found_fasta == 1 ) { print {$out_gff_fh} $line; next; } my @cells = split( /\t/, $line ); my @tags = split( /;/, $cells[8] ); my $found_id = 0; for ( my $i = 0 ; $i < @tags ; $i++ ) { if ( $tags[$i] =~ /^(ID=["']?)([^;"']+)(["']?)/ ) { my $current_id = $2; $current_id .= '___' . $self->suffix_counter; $tags[$i] = $1 . $current_id . $3; $self->suffix_counter( $self->suffix_counter + 1 ); $found_id++; last; } } if ( $found_id == 0 ) { unshift( @tags, 'ID=id___' . $self->suffix_counter ); $self->suffix_counter( $self->suffix_counter + 1 ); } $cells[8] = join( ';', @tags ); print {$out_gff_fh} join( "\t", @cells ); } if ( $found_fasta == 0 ) { $self->logger->warn( "Input GFF file doesnt appear to have the FASTA sequence at the end of the file so is being excluded from the analysis: $input_file" ); return undef; } close($out_gff_fh); close($input_gff_fh); return $output_file; } sub _get_ids_for_gff_file { my ( $self, $file ) = @_; my @gene_ids; my $tags_regex = $self->_tags_to_filter; my $gffio = Bio::Tools::GFF->new( -file => $file, -gff_version => 3 ); while ( my $feature = $gffio->next_feature() ) { next if !( $feature->primary_tag =~ /$tags_regex/ ); my $gene_id = $self->_get_feature_id($feature); push( @gene_ids, $gene_id ) if ( defined($gene_id) ); } return \@gene_ids; } sub _get_feature_id { my ( $self, $feature ) = @_; my ( $gene_id, @junk ); if ( $feature->has_tag('ID') ) { ( $gene_id, @junk ) = $feature->get_tag_values('ID'); } elsif ( $feature->has_tag('locus_tag') ) { ( $gene_id, @junk ) = $feature->get_tag_values('locus_tag'); } else { return undef; } $gene_id =~ s!["']!!g; return undef if ( $gene_id eq "" ); return $gene_id; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/ReorderSpreadsheet.pm000066400000000000000000000075071304207556500213410ustar00rootroot00000000000000package Bio::Roary::ReorderSpreadsheet; # ABSTRACT: Take in a tree file and a spreadsheet and output a spreadsheet with reordered columns =head1 SYNOPSIS Take in a tree file and a spreadsheet and output a spreadsheet with reordered columns use Bio::Roary::ReorderSpreadsheet; my $obj = Bio::Roary::ReorderSpreadsheet->new( tree_file => $tree_file, spreadsheet => 'groups.csv' ); $obj->reorder_spreadsheet(); =cut use Moose; use Text::CSV; use Bio::Roary::SampleOrder; use Bio::Roary::GroupStatistics; with 'Bio::Roary::SpreadsheetRole'; has 'tree_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'spreadsheet' => ( is => 'ro', isa => 'Str', required => 1 ); has 'tree_format' => ( is => 'ro', isa => 'Str', default => 'newick' ); has 'output_filename' => ( is => 'ro', isa => 'Str', default => 'reordered_groups_stats.csv' ); has 'search_strategy' => ( is => 'ro', isa => 'Str', default => 'depth' ); has 'sortby' => ( is => 'ro', isa => 'Maybe[Str]'); has '_sample_order' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__sample_order' ); has '_column_mappings' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__column_mappings' ); sub BUILD { my ($self) = @_; # read the headers first $self->_column_mappings; } sub reorder_spreadsheet { my ($self) = @_; # make sure the file handle is at the start seek($self->_input_spreadsheet_fh ,0,0); while ( my $row = $self->_csv_parser->getline( $self->_input_spreadsheet_fh ) ) { $self->_csv_output->print($self->_output_spreadsheet_fh, $self->_remap_columns($row)); } close($self->_output_spreadsheet_fh); close($self->_input_spreadsheet_fh); return 1; } sub _remap_columns { my ($self, $row) = @_; my @output_row; for(my $output_index = 0; $output_index < @{$self->_column_mappings}; $output_index++) { my $input_index = $self->_column_mappings->[$output_index]; push(@output_row, $row->[$input_index]); } return \@output_row; } sub _column_mappings_populate_fixed_headers { my ($self, $column_mappings,$header_row) = @_; my $column_counter = 0; for($column_counter = 0; $column_counter < $self->_num_fixed_headers; $column_counter++) { push(@{$column_mappings}, $column_counter); shift(@{$header_row}); } return $column_counter; } sub _build__column_mappings { my ($self) = @_; my $header_row = $self->_csv_parser->getline( $self->_input_spreadsheet_fh ); my @column_mappings; my $column_counter = $self->_column_mappings_populate_fixed_headers(\@column_mappings, $header_row); # put the input column names into an array where the key is the name and the value is the order my %input_sample_order; for(my $i = 0; $i < @{$header_row}; $i++) { $input_sample_order{$header_row->[$i]} = $i + $column_counter; } # Go through the order of the samples from the tree and see if the headers exist for my $sample_name (@{$self->_sample_order}) { if(defined($input_sample_order{$sample_name})) { push(@column_mappings, $input_sample_order{$sample_name}); delete($input_sample_order{$sample_name}); } $column_counter++; } # Add any columns not in the tree to the end for my $sample_name (keys %input_sample_order) { push(@column_mappings, $input_sample_order{$sample_name}); delete($input_sample_order{$sample_name}); $column_counter++; } return \@column_mappings; } sub _build__sample_order { my ($self) = @_; my $obj = Bio::Roary::SampleOrder->new( tree_file => $self->tree_file, tree_format => $self->tree_format, search_strategy => $self->search_strategy, sortby => $self->sortby ); return $obj->ordered_samples(); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/SampleOrder.pm000066400000000000000000000024401304207556500177530ustar00rootroot00000000000000package Bio::Roary::SampleOrder; # ABSTRACT: Take in a tree file and return an ordering of the samples =head1 SYNOPSIS Take in a tree file and return an ordering of the samples. Defaults to depth first search use Bio::Roary::SampleOrder; my $obj = Bio::Roary::SampleOrder->new( tree_file => $tree_file, ); $obj->ordered_samples(); =cut use Moose; use Bio::TreeIO; has 'tree_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'tree_format' => ( is => 'ro', isa => 'Str', default => 'newick' ); has 'ordered_samples' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build_ordered_samples' ); # 'b|breadth' first order or 'd|depth' first order has 'search_strategy' => ( is => 'ro', isa => 'Str', default => 'depth' ); has 'sortby' => (is => 'ro', isa => 'Maybe[Str]'); sub _build_ordered_samples { my ($self) = @_; my $input = Bio::TreeIO->new( -file => $self->tree_file, -format => $self->tree_format ); my $tree = $input->next_tree; my @taxa; for my $leaf_node ( $tree->get_nodes($self->search_strategy,$self->sortby) ) { if($leaf_node->is_Leaf) { push( @taxa, $leaf_node->id ); } } return \@taxa; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/SequenceLengths.pm000066400000000000000000000021421304207556500206320ustar00rootroot00000000000000package Bio::Roary::SequenceLengths; # ABSTRACT: Take in a fasta file and create a hash with the length of each sequence =head1 SYNOPSIS Add labels to the groups use Bio::Roary::SequenceLengths; my $obj = Bio::Roary::SequenceLengths->new( fasta_file => 'abc.fa', ); $obj->sequence_lengths; =cut use Moose; use Bio::SeqIO; use Bio::Roary::Exceptions; has 'fasta_file' => ( is => 'ro', isa => 'Str', required => 1 ); has 'sequence_lengths' => ( is => 'ro', isa => 'HashRef', lazy => 1, builder => '_build_sequence_lengths' ); has '_input_seqio' => ( is => 'ro', isa => 'Bio::SeqIO', lazy => 1, builder => '_build__input_seqio' ); sub _build__input_seqio { my ($self) = @_; return Bio::SeqIO->new( -file => $self->fasta_file, -format => 'Fasta' ); } sub _build_sequence_lengths { my ($self) = @_; my %sequence_lengths; while ( my $input_seq = $self->_input_seqio->next_seq() ) { $sequence_lengths{ $input_seq->display_id } = $input_seq->length(); } return \%sequence_lengths; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/SortFasta.pm000066400000000000000000000077521304207556500174570ustar00rootroot00000000000000package Bio::Roary::SortFasta; # ABSTRACT: sort a fasta file by name =head1 SYNOPSIS sort a fasta file by name use Bio::Roary::SortFasta; my $obj = Bio::Roary::SortFasta->new( input_filename => 'infasta.fa', ); $obj->sort_fasta->replace_input_with_output_file; =cut use Moose; use File::Copy; use Bio::SeqIO; has 'input_filename' => ( is => 'ro', isa => 'Str', required => 1 ); has 'output_filename' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build_output_filename' ); has 'make_multiple_of_three' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'remove_nnn_from_end' => ( is => 'ro', isa => 'Bool', default => 0 ); has 'similarity' => ( is => 'rw', isa => 'Num', default => 1 ); has 'sequences_unaligned' => ( is => 'rw', isa => 'Bool', default => 0 ); has '_input_seqio' => ( is => 'ro', isa => 'Bio::SeqIO', lazy => 1, builder => '_build__input_seqio' ); has '_output_seqio' => ( is => 'ro', isa => 'Bio::SeqIO', lazy => 1, builder => '_build__output_seqio' ); sub _build_output_filename { my ($self) = @_; return $self->input_filename . ".sorted.fa"; } sub _build__input_seqio { my ($self) = @_; return Bio::SeqIO->new( -file => $self->input_filename, -format => 'Fasta' ); } sub _build__output_seqio { my ($self) = @_; return Bio::SeqIO->new( -file => ">" . $self->output_filename, -format => 'Fasta' ); } sub _add_padding_to_make_sequence_length_multiple_of_three { my ( $self, $input_seq ) = @_; my $seq_length = $input_seq->length(); if ( $seq_length % 3 == 1 ) { $input_seq->seq( $input_seq->seq() . "NN" ); } elsif ( $seq_length % 3 == 2 ) { $input_seq->seq( $input_seq->seq() . "N" ); } return $input_seq; } sub _remove_nnn_from_all_sequences { my ( $self, $input_sequences ) = @_; for my $sequence_name ( sort keys %{$input_sequences} ) { my $sequence = $input_sequences->{$sequence_name}->seq(); $sequence =~ s/NNN$//i; $input_sequences->{$sequence_name}->seq($sequence); } return $input_sequences; } sub sort_fasta { my ($self) = @_; my %input_sequences; my $nnn_at_end_of_all_sequences = 1; my $sequence; my $variation_detected = 0; while ( my $input_seq = $self->_input_seqio->next_seq() ) { $sequence = $input_seq->seq if(!defined($sequence)); $self->_add_padding_to_make_sequence_length_multiple_of_three($input_seq) if ( $self->make_multiple_of_three ); $nnn_at_end_of_all_sequences = 0 if ( $nnn_at_end_of_all_sequences == 1 && !( $input_seq->seq() =~ /NNN$/i ) ); $input_sequences{ $input_seq->display_id } = $input_seq; my $factor = $self->_percentage_similarity($sequence, $input_seq->seq); if($factor < $self->similarity) { $self->similarity($factor); } } $self->_remove_nnn_from_all_sequences( \%input_sequences ) if ( $self->remove_nnn_from_end && $nnn_at_end_of_all_sequences ); my $sequence_length = 0; my $sequences_unaligned = 0; for my $sequence_name ( sort keys %input_sequences ) { $sequence_length = $input_sequences{$sequence_name}->length if($sequence_length == 0); $self->sequences_unaligned(1) if($input_sequences{$sequence_name}->length != $sequence_length); $self->_output_seqio->write_seq( $input_sequences{$sequence_name} ); } return $self; } sub replace_input_with_output_file { my ($self) = @_; move( $self->output_filename, $self->input_filename ); return $self; } sub _percentage_similarity { my ($self, $string1, $string2) = @_; my $num_differences = 0; my $string1_length = length($string1); for(my $i = 0; $i < $string1_length && $i< length($string2); $i++) { $num_differences++ if( substr($string1, $i, 1) ne substr($string2, $i, 1)); } return 1 if($num_differences == 0); return 0 if($string1_length == 0); return (1.0 - ($num_differences/$string1_length)); } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/SplitGroups.pm000066400000000000000000000203711304207556500200340ustar00rootroot00000000000000package Bio::Roary::SplitGroups; # ABSTRACT: split groups =head1 SYNOPSIS use Bio::Roary::SplitGroups; =cut use Moose; use Bio::Roary::AnalyseGroups; use File::Path qw(make_path remove_tree); use File::Copy qw(move); use File::Temp; use File::Basename; use File::Slurper 'read_lines'; use Cwd; has 'groupfile' => ( is => 'ro', isa => 'Str', required => 1 ); has 'fasta_files' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); has 'outfile' => ( is => 'ro', isa => 'Str', required => 1 ); has 'iterations' => ( is => 'ro', isa => 'Int', default => 5 ); has 'dont_delete' => ( is => 'ro', isa => 'Bool', default => 0 ); has '_neighbourhood_size' => ( is => 'ro', isa => 'Int', default => 5 ); has '_group_filelist' => ( is => 'rw', isa => 'ArrayRef', lazy_build => 1 ); has '_tmp_dir_object' => ( is => 'ro', isa => 'File::Temp::Dir', default => sub { File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } ); has '_tmp_dir' => ( is => 'ro', isa => 'Str', lazy => 1, builder => '_build__tmp_dir' ); has '_analyse_groups_obj' => ( is => 'ro', lazy_build => 1 ); has '_genes_to_files' => ( is => 'ro', lazy_build => 1 ); has '_genes_to_groups' => ( is => 'rw', isa => 'HashRef' ); has '_first_gene_of_group_which_doesnt_have_paralogs' => ( is => 'rw', isa => 'HashRef', default => sub {{}} ); has '_genes_to_neighbourhood' => ( is => 'rw', isa => 'HashRef', lazy => 1, builder => '_build__genes_to_neighbourhood' ); has '_gene_files_temp_dir_obj' => ( is => 'ro', isa => 'File::Temp::Dir', default => sub { File::Temp->newdir( DIR => getcwd, CLEANUP => 1 ); } ); has '_do_sorting' => ( is => 'rw', isa => 'Bool', default => 0 ); # set to 1 for testing only sub _build__tmp_dir { my ($self) = @_; return $self->_tmp_dir_object->dirname(); } sub _build__analyse_groups_obj { my ( $self ) = @_; return Bio::Roary::AnalyseGroups->new( fasta_files => $self->fasta_files, groups_filename => $self->groupfile ); } sub _build__genes_to_files { my ( $self ) = @_; return $self->_analyse_groups_obj->_genes_to_file; } sub _build__group_filelist { my ( $self ) = @_; my $tmp = $self->_tmp_dir; my @filelist = ( $self->groupfile ); for my $i ( 1..($self->iterations - 1) ){ push( @filelist, "$tmp/group_$i" ); } push( @filelist, $self->outfile ); return \@filelist; } sub _build__genes_to_neighbourhood { my ( $self ) = @_; my %genes_to_neighbourhood; for my $fasta_file( @{$self->fasta_files}) { my ( $filename, $directories, $suffix ) = fileparse( $fasta_file, qr/\.[^.]*/ ); system('grep \> '.$fasta_file.'| sed \'s/>//\' >'.$self->_gene_files_temp_dir_obj."/".$filename.$suffix ) ; my @genes = read_lines($self->_gene_files_temp_dir_obj."/".$filename.$suffix ); for(my $i =0; $i< @genes; $i++) { for(my $offset = 1; $offset <= $self->_neighbourhood_size; $offset++) { if($i -$offset >= 0) { push(@{$genes_to_neighbourhood{$genes[$i]}}, $genes[$i - $offset ]); } if($i +$offset <@genes) { push(@{$genes_to_neighbourhood{$genes[$i]}}, $genes[$i + $offset ]); } } } } return \%genes_to_neighbourhood; } sub split_groups { my ( $self ) = @_; # iteratively for my $x ( 0..($self->iterations - 1) ){ my ( $in_groups, $out_groups ) = $self->_get_files_for_iteration( $x ); # read in groups, check paralogs and split my @newgroups; my $any_paralogs = 0; $self->_set_genes_to_groups( $in_groups ); open( my $group_handle, '<', $in_groups ); while( my $line = <$group_handle> ){ my @group = split( /\s+/, $line ); if($self->_first_gene_of_group_which_doesnt_have_paralogs->{$group[0]}) { push( @newgroups, \@group ); } elsif(@group == 1) { $self->_first_gene_of_group_which_doesnt_have_paralogs->{$group[0]}++; push( @newgroups, \@group ); } elsif( $self->_contains_paralogs( \@group ) ){ my @true_orthologs = @{ $self->_true_orthologs( \@group ) }; push( @newgroups, @true_orthologs); $any_paralogs = 1; } else { $self->_first_gene_of_group_which_doesnt_have_paralogs->{$group[0]}++; push( @newgroups, \@group ); } } close( $group_handle ); # check if next iteration required, move output if not unless ($any_paralogs){ move $in_groups, $self->outfile; # input file will be the same as new output file if no splitting has been performed last; } # write split groups to file open( my $outfile_handle, '>', $out_groups ); for my $g ( @newgroups ) { my $group_str = join( "\t", @{ $g } ) . "\n"; print $outfile_handle $group_str; } close( $outfile_handle ); } } sub _set_genes_to_groups { my ( $self, $groupfile ) = @_; my %genes2groups; my $c = 0; open( my $gfh, '<', $groupfile ); while( my $line = <$gfh> ){ chomp $line; my @genes = split( /\s+/, $line ); for my $g ( @genes ){ $genes2groups{$g} = $c; } $c++; } close($gfh); $self->_genes_to_groups( \%genes2groups ); } sub _update_genes_to_groups { my ( $self, $groups ) = @_; my %genes2groups = %{ $self->_genes_to_groups }; my $c = 1; for my $g ( @{ $groups } ){ for my $h ( @{ $g } ){ $genes2groups{$h} .= ".$c"; } $c++; } $self->_genes_to_groups( \%genes2groups ); } sub _get_files_for_iteration { my ( $self, $n ) = @_; my @filelist = @{ $self->_group_filelist }; return ( $filelist[$n], $filelist[$n+1] ); } sub _contains_paralogs { my ( $self, $group ) = @_; return 1 if defined $self->_find_paralogs( $group ); return 0; } sub _find_paralogs { my ( $self, $group ) = @_; my %occ; for my $gene ( @{ $group } ){ my $gene_file = $self->_genes_to_files->{ $gene }; push( @{ $occ{$gene_file} }, $gene ); } # pick the smallest number of paralogs my $smallest_number = 1000000; my $smallest_group; for my $v ( values %occ ){ my $v_len = scalar( @{$v} ); if ( $v_len < $smallest_number && $v_len > 1 ){ $smallest_number = $v_len; $smallest_group = $v; } } return $smallest_group if ( defined $smallest_group ); return undef; } sub _true_orthologs { my ( $self, $group ) = @_; # first, create CGN hash for group my %cgns; for my $g ( @{ $group } ){ $cgns{$g} = $self->_parse_gene_neighbourhood( $g ); } # finding paralogs in the group my @paralogs = @{ $self->_find_paralogs( $group ) }; my @paralog_cgns_groups; for my $p ( @paralogs ){ my %paralog_groups ; for my $paralog_gene (@{$cgns{$p}}) { my $gene_paralog_group = $self->_genes_to_groups->{$paralog_gene}; next unless( defined($gene_paralog_group)); $paralog_groups{$self->_genes_to_groups->{$paralog_gene}}++; } push( @paralog_cgns_groups, \%paralog_groups ); } # create data structure to hold new groups my @new_groups; for my $p ( @paralogs ){ push( @new_groups, [ $p ] ); } push( @new_groups, [] ); # extra "leftovers" array to gather genes that don't share CGN with anything # cluster other members of the group to their closest match for my $g ( @{ $group } ){ next if ( grep {$_ eq $g} @paralogs ); my $closest = $self->_closest_cgn( $cgns{$g}, \@paralog_cgns_groups ); push( @{ $new_groups[$closest] }, $g ); } # check for "leftovers", remove if absent my $last = pop @new_groups; push( @new_groups, $last ) if ( @$last > 0 ); # sort if ( $self->_do_sorting ){ my @sorted_new_groups; for my $gr ( @new_groups ){ my @s_gr = sort @{ $gr }; push( @sorted_new_groups, \@s_gr ); } return \@sorted_new_groups; } return \@new_groups; } sub _closest_cgn { my ( $self, $cgn, $p_cgns ) = @_; my @paralog_cgns = @{ $p_cgns }; my $best_score = 0; my $bs_index = -1; # return -1 to add to "leftovers" array if no better score is found for my $i ( 0..$#paralog_cgns ){ my $p_cgn = $paralog_cgns[$i]; my $score = $self->_shared_cgn_score( $cgn, $p_cgn ); if ( $score > $best_score ){ $best_score = $score; $bs_index = $i; } } return $bs_index; } sub _shared_cgn_score { my ( $self, $cgn1, $cgn2 ) = @_; my $total_shared = 0; for my $i ( @{ $cgn1 } ){ my $input_group = $self->_genes_to_groups->{$i}; next unless(defined($input_group)); $total_shared++ if($cgn2->{$input_group}); } if( (scalar @{ $cgn1 }) == 0) { return 0; } my $score = $total_shared/scalar @{ $cgn1 }; return $score; } sub _parse_gene_neighbourhood { my ( $self, $gene_id ) = @_; return $self->_genes_to_neighbourhood->{$gene_id }; } no Moose; __PACKAGE__->meta->make_immutable; 1; Roary-3.8.0/lib/Bio/Roary/SpreadsheetRole.pm000066400000000000000000000035441304207556500206350ustar00rootroot00000000000000package Bio::Roary::SpreadsheetRole; # ABSTRACT: Read and write a spreadsheet =head1 SYNOPSIS with 'Bio::Roary::SpreadsheetRole'; =cut use Moose::Role; has 'spreadsheet' => ( is => 'ro', isa => 'Str', required => 1 ); has '_fixed_headers' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__fixed_headers' ); has '_input_spreadsheet_fh' => ( is => 'ro', lazy => 1, builder => '_build__input_spreadsheet_fh' ); has '_output_spreadsheet_fh' => ( is => 'ro', lazy => 1, builder => '_build__output_spreadsheet_fh' ); has '_fixed_headers' => ( is => 'ro', isa => 'ArrayRef', lazy => 1, builder => '_build__fixed_headers' ); has '_num_fixed_headers' => ( is => 'ro', isa => 'Int', lazy => 1, builder => '_build__num_fixed_headers' ); has '_csv_parser' => ( is => 'ro', isa => 'Text::CSV',lazy => 1, builder => '_build__csv_parser' ); has '_csv_output' => ( is => 'ro', isa => 'Text::CSV',lazy => 1, builder => '_build__csv_output' ); sub BUILD { my ($self) = @_; $self->_input_spreadsheet_fh; } sub _build__fixed_headers { my ($self) = @_; my @fixed_headers = @{Bio::Roary::GroupStatistics->fixed_headers()}; return \@fixed_headers; } sub _build__csv_parser { my ($self) = @_; return Text::CSV->new( { binary => 1, always_quote => 1} ); } sub _build__csv_output { my ($self) = @_; return Text::CSV->new( { binary => 1, always_quote => 1, eol => "\r\n"} ); } sub _build__input_spreadsheet_fh { my ($self) = @_; open( my $fh, $self->spreadsheet ) or die "Couldnt open input spreadsheet: ".$self->spreadsheet ; return $fh; } sub _build__output_spreadsheet_fh { my ($self) = @_; open( my $fh, '>', $self->output_filename ); return $fh; } sub _build__num_fixed_headers { my ($self) = @_; return @{$self->_fixed_headers}; } 1; Roary-3.8.0/t/000077500000000000000000000000001304207556500130705ustar00rootroot00000000000000Roary-3.8.0/t/00_requires_external.t000077500000000000000000000006161304207556500173230ustar00rootroot00000000000000#!/usr/bin/env perl use Test::Most; use FindBin; plan tests => 8; bail_on_fail if 0; use Env::Path 'PATH'; my $OPSYS = $^O; my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS"; for my $dir ($BINDIR, $FindBin::RealBin) { if (-d $dir) { $ENV{PATH} .= ":$dir"; } } ok(scalar PATH->Whence($_), "$_ in PATH") for qw(blastp makeblastdb mcl mcxdeblast bedtools prank parallel mafft); Roary-3.8.0/t/Bio/000077500000000000000000000000001304207556500136015ustar00rootroot00000000000000Roary-3.8.0/t/Bio/Roary/000077500000000000000000000000001304207556500146755ustar00rootroot00000000000000Roary-3.8.0/t/Bio/Roary/AccessoryBinaryFasta.t000077500000000000000000000045121304207556500211460ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::AccessoryBinaryFasta'); } my $dummy_annotate_groups = Bio::Roary::AnnotateGroups->new( gff_files => ['t/data/query_1.gff','t/data/query_2.gff','t/data/query_3.gff'], groups_filename => 't/data/query_groups', ); my $dummy_analyse_groups = Bio::Roary::AnalyseGroups->new( fasta_files => ['t/data/query_1.fa','t/data/query_2.fa','t/data/query_3.fa'], groups_filename => 't/data/query_groups' ); ok( my $obj = Bio::Roary::AccessoryBinaryFasta->new( input_files => [ 't/abc/aaa', 't/abc/bbb', 't/abc/ccc', 't/abc/ddd' ], groups_to_files => { group_1 => { 't/abc/aaa' => [1] }, group_2 => { 't/abc/aaa' => [1], 't/abc/bbb' => [2] }, group_3 => { 't/abc/aaa' => [1], 't/abc/bbb' => [2], 't/abc/ccc' => [3] }, group_4 => { 't/abc/aaa' => [1], 't/abc/bbb' => [2], 't/abc/ccc' => [3], 't/abc/ddd' => [4] }, }, _lower_bound_value => 0, _upper_bound_value => 4, annotate_groups_obj => $dummy_annotate_groups, analyse_groups_obj => $dummy_analyse_groups ), 'initialise accessory binary fasta file' ); ok( $obj->create_accessory_binary_fasta(), 'create output file' ); compare_ok( 'accessory_binary_genes.fa', 't/data/expected_accessory_binary_genes.fa','binary accessory fasta file created'); ok( $obj = Bio::Roary::AccessoryBinaryFasta->new( input_files => [ 'aaa', 'bbb', 'ccc', 'ddd' ], groups_to_files => { group_1 => { 'aaa' => [1] }, group_2 => { 'aaa' => [1], 'bbb' => [2] }, group_3 => { 'aaa' => [1], 'bbb' => [2], 'ccc' => [3] }, group_4 => { 'aaa' => [1], 'bbb' => [2], 'ccc' => [3], 'ddd' => [4] }, }, annotate_groups_obj => $dummy_annotate_groups, analyse_groups_obj => $dummy_analyse_groups ), 'initialise accessory binary fasta file bounded' ); is($obj->_lower_bound_value, 1, 'lower bound value'); is($obj->_upper_bound_value, 3, 'upper bound value'); ok( $obj->create_accessory_binary_fasta(), 'create output file bounded' ); compare_ok( 'accessory_binary_genes.fa', 't/data/expected_accessory_binary_genes_bounded.fa','binary accessory fasta file created bounded'); done_testing(); Roary-3.8.0/t/Bio/Roary/AccessoryClustering.t000077500000000000000000000062271304207556500210670ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::AccessoryClustering'); } my $identity_to_num_clusters = { '1' => [ 10, 10 ], '0.99' => [ 4, 5 ], '0.95' => [ 2, 4 ], '0.90' => [ 1, 1 ], }; for my $percentage_identity ( keys %{$identity_to_num_clusters} ) { ok( my $obj = Bio::Roary::AccessoryClustering->new( input_file => 't/data/input_accessory_binary.fa', identity => $percentage_identity ), "initialise object with identity of $percentage_identity" ); ok( my @clusters = keys %{ $obj->clusters_to_samples }, "build the clusters for $percentage_identity" ); ok( $obj->sample_weights, "build samples weights for $percentage_identity" ); ok( $obj->samples_to_clusters, "build samples to clusters for $percentage_identity" ); my $min_cluster_size = $identity_to_num_clusters->{$percentage_identity}->[0]; my $max_cluster_size = $identity_to_num_clusters->{$percentage_identity}->[1]; ok( ( @clusters >= $min_cluster_size && @clusters <= $max_cluster_size ? 1 : 0 ), "check number of clusters as expected, allowing for some variation for $percentage_identity" ); } my $obj = Bio::Roary::AccessoryClustering->new( input_file => 't/data/input_accessory_binary.fa', identity => 0.9 ); is_deeply( $obj->samples_to_clusters, { 'seq6' => 'seq1', 'seq3' => 'seq1', 'seq7' => 'seq1', 'seq9' => 'seq1', 'seq10' => 'seq1', 'seq2' => 'seq1', 'seq8' => 'seq1', 'seq1' => 'seq1', 'seq4' => 'seq1', 'seq5' => 'seq1' }, 'samples to clusters' ); my @sample_weights = values %{ $obj->sample_weights }; is_deeply( \@sample_weights, [ 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1 ], 'sample weights' ); $obj = Bio::Roary::AccessoryClustering->new( input_file => 't/data/input_accessory_binary.fa', identity => 1 ); is_deeply( $obj->samples_to_clusters, { 'seq6' => 'seq6', 'seq3' => 'seq3', 'seq7' => 'seq7', 'seq9' => 'seq9', 'seq10' => 'seq10', 'seq2' => 'seq2', 'seq8' => 'seq8', 'seq1' => 'seq1', 'seq4' => 'seq4', 'seq5' => 'seq5' }, 'samples to clusters' ); @sample_weights = values %{ $obj->sample_weights }; is_deeply( \@sample_weights, [ 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 ], 'sample weights' ); $obj = Bio::Roary::AccessoryClustering->new( input_file => 't/data/large_accessory_binary_genes.fa' ); ok( my @clusters = keys %{ $obj->clusters_to_samples }, "build the clusters for large_accessory_binary_genes.fa" ); ok( $obj->sample_weights, "build samples weights for large_accessory_binary_genes.fa" ); ok( $obj->samples_to_clusters, "build samples to clusters for large_accessory_binary_genes.fa" ); ok( ( @clusters >= 6 && @clusters <= 14 ? 1 : 0 ), "check number of clusters as expected, allowing for some variation for large_accessory_binary_genes.fa" ); unlink('_accessory_clusters'); unlink('_accessory_clusters.clstr'); done_testing(); Roary-3.8.0/t/Bio/Roary/AnalyseGroups.t000066400000000000000000000036421304207556500176630ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::AnalyseGroups'); } ok( my $plot_groups_obj = Bio::Roary::AnalyseGroups->new( fasta_files => [ 't/data/example_1.faa', 't/data/example_2.faa' ], groups_filename => 't/data/example_groups' ), 'initialise with two fasta files' ); is( $plot_groups_obj->_number_of_isolates, 2, 'Number of isolates' ); is_deeply( $plot_groups_obj->_genes_to_file, { '1234#10_00003' => 't/data/example_1.faa', '1234#10_00017' => 't/data/example_2.faa', '1234#10_00001' => 't/data/example_1.faa', '1234#10_00016' => 't/data/example_2.faa', '1234#10_00007' => 't/data/example_1.faa', '1234#10_00006' => 't/data/example_1.faa', '1234#10_00018' => 't/data/example_2.faa', '1234#10_00005' => 't/data/example_1.faa', '1234#10_00002' => 't/data/example_1.faa' }, 'genes map to the correct files' ); is_deeply( $plot_groups_obj->_groups_to_genes, { 'group_3' => [ '1234#10_00005', '1234#10_00005' ], 'group_5' => [ '1234#10_00016' ], 'group_4' => [ '1234#10_00006', '1234#10_00007' ], 'group_6' => [ '1234#10_00017' ], 'group_1' => [ '1234#10_00001', '1234#10_00002' ], 'group_2' => [ '1234#10_00003', '1234#10_00018', '1234#10_00005' ] }, 'Groups to genes hash' ); is_deeply( $plot_groups_obj->_genes_to_groups, { '1234#10_00003' => 'group_2', '1234#10_00017' => 'group_6', '1234#10_00001' => 'group_1', '1234#10_00016' => 'group_5', '1234#10_00007' => 'group_4', '1234#10_00006' => 'group_4', '1234#10_00018' => 'group_2', '1234#10_00005' => 'group_3', '1234#10_00002' => 'group_1' }, 'genes to groups hash' ); done_testing(); Roary-3.8.0/t/Bio/Roary/AnnotateGroups.t000077500000000000000000000055271304207556500200470ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Moose; use Test::Files; use File::Slurper qw(read_lines); BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::AnnotateGroups'); } my $obj; ok( $obj = Bio::Roary::AnnotateGroups->new( gff_files => [ 't/data/query_1.gff', 't/data/query_2.gff', 't/data/query_3.gff' ], groups_filename => 't/data/query_groups', ), 'initalise' ); ok( $obj->reannotate, 'reannotate' ); is_deeply( $obj->_ids_to_gene_size, { 'abc_00012' => 188, '2_3' => 1001, '1_1' => 959, 'abc_00004' => 716, '3_3' => 1001, '3_2' => 725, '2_2' => 725, 'abc_00006' => 725, 'abc_00008' => 935, '1_6' => 134, 'abc_00015' => 134, '3_1' => 959, 'abc_00014' => 134, 'abc_01705' => 1556, 'abc_00013' => 75, 'abc_00010' => 227, '1_2' => 725, 'abc_00011' => 947, 'abc_00016' => 686, '2_7' => 134, '1_3' => 1001, '2_1' => 959, '3_5' => 686, 'abc_00002' => 146, 'abc_00003' => 197 }, 'gene lengths as expected' ); is_deeply( $obj->group_nucleotide_lengths, { 'group_3' => { 'average' => 1001, 'min' => 1001, 'max' => 1001 }, 'group_5' => { 'average' => 686, 'min' => 686, 'max' => 686 }, 'group_7' => { 'average' => 134, 'min' => 134, 'max' => 134 }, 'group_1' => { 'average' => 959, 'min' => 959, 'max' => 959 }, 'group_6' => { 'average' => 134, 'min' => 134, 'max' => 134 }, 'group_2' => { 'average' => 725, 'min' => 725, 'max' => 725 } }, 'group lengths' ); compare_files( 'reannotated_groups_file', 't/data/expected_reannotated_groups_file', 'groups reannotated as expected' ); unlink('reannotated_groups_file'); ok( $obj = Bio::Roary::AnnotateGroups->new( gff_files => [ 't/data/gene_name_field/annotation_1.gff', 't/data/gene_name_field/annotation_2.gff' ], groups_filename => 't/data/gene_name_field/groups', ), 'initalise where gene key is replaced by Name' ); ok( $obj->reannotate, 'reannotate' ); compare_files('reannotated_groups_file', 't/data/gene_name_field/expected_reannotated_groups_file', 'Reannoated groups file has the gene names transferred' ); unlink('reannotated_groups_file'); done_testing(); Roary-3.8.0/t/Bio/Roary/AssemblyStatistics.t000066400000000000000000000107221304207556500207160ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::AssemblyStatistics'); } my $obj; ok( $obj = Bio::Roary::AssemblyStatistics->new( spreadsheet => 't/data/input_block_spreadsheet.csv' ), 'initialise spreadsheet' ); my @genes = sort keys %{ $obj->_genes_to_rows }; is_deeply( \@genes, [ 'SBOV29371', 'SBOV38871', 'SBOV43201', 'STY3593', 'STY4162', 'bcsC_1', 'betC_2', 'comM_2', 'dmsA4_1', 'dosC', 'dsbA_3', 'fadH_1', 'fimD_3', 'fliB_2', 'fliF', 'ftsN', 'gatY_1', 'glfT2', 'group_1000', 'group_1001', 'group_1004', 'group_1006', 'group_1009', 'group_220', 'group_277', 'group_281', 'group_283', 'group_284', 'group_288', 'hemD', 'hsrA_2', 'icsA', 'kdpD', 'ligB_1', 'marT_1', 'nepI', 'rffH', 'rpoS', 'selA_1', 'speC_3', 'sptP', 'srgB', 'stp', 'tmcA', 'tub', 'yadA', 'ybbW_1', 'yhaO_2', 'yicJ_1', 'yigZ' ], 'all gene rows available' ); is_deeply( $obj->ordered_genes, [ 'dmsA4_1', 'group_1000', 'group_1001', 'SBOV43201', 'dosC', 'stp', 'fliB_2', 'fliF', 'dsbA_3', 'srgB', 'fimD_3', 'betC_2', 'tmcA', 'tub', 'rffH', 'hemD', 'group_1006', 'STY3593', 'group_1004', 'yigZ', 'group_220', 'glfT2', 'kdpD', 'speC_3', 'ybbW_1', 'sptP', 'SBOV29371', 'rpoS', 'fadH_1', 'yhaO_2', 'bcsC_1', 'STY4162', 'yadA', 'ligB_1', 'icsA', 'marT_1', 'selA_1', 'nepI', 'gatY_1', 'SBOV38871', 'group_288', 'hsrA_2', 'group_281', 'group_283', 'group_284', 'yicJ_1', 'ftsN', 'group_277', 'group_1009', 'comM_2' ], 'ordered genes' ); is_deeply( $obj->sample_names_to_column_index, { 'threeblocks' => 18, 'nocontigs' => 17, 'contigwithgaps' => 16, 'oneblock' => 14, 'threeblocksinversion' => 19, 'oneblockrev' => 15 }, 'sample names to column index' ); is_deeply( $obj->_sample_statistics('oneblock'), { num_blocks => 1, largest_block_size => 50 }, 'one block' ); is_deeply( $obj->_sample_statistics('oneblockrev'), { num_blocks => 1, largest_block_size => 50 }, 'one block reversed' ); is_deeply( $obj->_sample_statistics('contigwithgaps'), { num_blocks => 1, largest_block_size => 50 }, 'one block where there are gaps everywhere' ); is_deeply( $obj->_sample_statistics('nocontigs'), { num_blocks => 50, largest_block_size => 1 }, 'no contiguous blocks' ); is_deeply( $obj->_sample_statistics('threeblocks'), { num_blocks => 3, largest_block_size => 21 }, 'three blocks' ); is_deeply( $obj->_sample_statistics('threeblocksinversion'), { num_blocks => 3, largest_block_size => 20 }, 'three blocks with an inversion in the middle' ); is_deeply( $obj->gene_category_count, { core => 50 }, 'Gene category counts' ); # t/data/gene_category_count.csv ok( $obj = Bio::Roary::AssemblyStatistics->new( spreadsheet => 't/data/gene_category_count.csv' ), 'initialise spreadsheet with variable numbers of genes in samples' ); is_deeply( $obj->gene_category_count, { 'core' => 1, 'cloud' => 4, 'soft_core' => 1, 'shell' => 24 }, 'Categories as expected' ); ok($obj->create_summary_output, 'create output file'); compare_ok('summary_statistics.txt', 't/data/expected_summary_statistics.txt', 'summary statistics as expected'); # t/data/gene_category_count.csv ok( $obj = Bio::Roary::AssemblyStatistics->new( spreadsheet => 't/data/gene_category_count.csv', core_definition => 0.9667 ), 'initialise spreadsheet with core of 96.67%' ); is_deeply( $obj->gene_category_count, { 'core' => 1, 'soft_core' => 1, 'cloud' => 4, 'shell' => 24 }, 'Categories as expected with cd of 96.67%' ); # t/data/gene_category_count.csv ok( $obj = Bio::Roary::AssemblyStatistics->new( spreadsheet => 't/data/gene_category_count.csv', core_definition => 0.9666 ), 'initialise spreadsheet with core of 96.66%' ); is_deeply( $obj->gene_category_count, { 'core' => 2, 'cloud' => 4, 'shell' => 24 }, 'Categories as expected with cd of 96.66%' ); unlink('summary_statistics.txt'); done_testing(); Roary-3.8.0/t/Bio/Roary/ChunkFastaFile.t000066400000000000000000000025231304207556500177130ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::ChunkFastaFile'); } my $obj; ok($obj = Bio::Roary::ChunkFastaFile->new( fasta_file => 't/data/example_1.faa', ),'initalise object to produce a single sequence file'); is_deeply($obj->sequence_file_names, [$obj->_working_directory_name.'/0.seq'], 'a single sequence file is created' ); compare_ok('t/data/example_1.faa', $obj->_working_directory_name.'/0.seq', 'input and output file should be the same'); ok($obj = Bio::Roary::ChunkFastaFile->new( fasta_file => 't/data/example_1.faa', target_chunk_size => 1, ),'initalise object to produce one file per sequence'); is_deeply($obj->sequence_file_names, [ $obj->_working_directory_name.'/0.seq', $obj->_working_directory_name.'/1.seq', $obj->_working_directory_name.'/2.seq', $obj->_working_directory_name.'/3.seq', $obj->_working_directory_name.'/4.seq', $obj->_working_directory_name.'/5.seq', ], 'a sequence file per sequence is created' ); compare_ok('t/data/expected_0.seq',$obj->_working_directory_name.'/0.seq', 'the first sequence file is as expected'); compare_ok('t/data/expected_5.seq', $obj->_working_directory_name.'/5.seq', 'the last sequence file is as expected'); done_testing(); Roary-3.8.0/t/Bio/Roary/CombinedProteome.t000066400000000000000000000016671304207556500203270ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::CombinedProteome'); } my $obj; ok( $obj = Bio::Roary::CombinedProteome->new( proteome_files => [ 't/data/example_1.faa', 't/data/example_2.faa' ], output_filename => 'combined_proteome.fa' ), 'initalise object with two files' ); ok( $obj->create_combined_proteome_file, 'Create a combined file' ); compare_ok('combined_proteome.fa', 't/data/expected_combined_proteome.fa', 'Combined file is as expected' ); unlink('combined_proteome.fa'); throws_ok{ Bio::Roary::CombinedProteome->new( proteome_files => [ 't/data/example_1.faa', 't/data/non_existant_file.faa' ], output_filename => 'combined_proteome.fa') } qr /Cant open file/, 'non existant files should throw an error'; done_testing(); Roary-3.8.0/t/Bio/Roary/CommandLine/000077500000000000000000000000001304207556500170635ustar00rootroot00000000000000Roary-3.8.0/t/Bio/Roary/CommandLine/ExtractProteomeFromGff.t000066400000000000000000000015351304207556500236500ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::ExtractProteomeFromGff'); } my $script_name = 'Bio::Roary::CommandLine::ExtractProteomeFromGff'; my $cwd = getcwd(); system('touch empty_file'); my %scripts_and_expected_files = ( 't/data/example_annotation.gff' => ['example_annotation.gff.proteome.faa','t/data/example_annotation.gff.proteome.faa.expected' ], '-t 1 t/data/example_annotation.gff' => ['example_annotation.gff.proteome.faa','t/data/example_annotation.gff.proteome.faa.expected' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); mock_execute_script_and_check_output( $script_name, \%scripts_and_expected_files ); done_testing(); Roary-3.8.0/t/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.t000066400000000000000000000022221304207556500250060ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Data::Dumper; use Cwd; use File::Which; BEGIN { unshift( @INC, './lib' ) } BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::GeneAlignmentFromNucleotides'); } my $script_name = 'Bio::Roary::CommandLine::GeneAlignmentFromNucleotides'; my $cwd = getcwd(); system('touch empty_file'); system('cp t/data/nuc_to_be_aligned.fa t/data/f.fa'); my %scripts_and_expected_files = ( 't/data/f.fa' => [ 't/data/f.fa.aln', 't/data/expected_nuc_multifasta.fa.aln' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); SKIP: { skip "prank not installed", 2 unless ( which('prank') ); mock_execute_script_and_check_output( $script_name, \%scripts_and_expected_files ); } SKIP: { skip "mafft not installed", 2 unless ( which('mafft') ); system('cp t/data/nuc_to_be_aligned.fa t/data/f.fa'); %scripts_and_expected_files = ( '--mafft t/data/f.fa' => [ 't/data/f.fa.aln', 't/data/expected_nuc_multifasta_mafft.fa.aln' ], ); mock_execute_script_and_check_output( $script_name, \%scripts_and_expected_files ); } done_testing(); Roary-3.8.0/t/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.t000066400000000000000000000016311304207556500245440ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp'); } my $script_name = 'Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp'; my $cwd = getcwd(); system('touch empty_file'); my %scripts_and_expected_files = ( '-m '.$cwd.'/t/bin/dummy_makeblastdb -b '.$cwd.'/t/bin/dummy_blastp -j Local t/data/example_1.faa' => [ 'blast_results', 't/data/empty_file' ], '-o different_output_filename -m '.$cwd.'/t/bin/dummy_makeblastdb -b '.$cwd.'/t/bin/dummy_blastp -j Local t/data/example_1.faa' => [ 'different_output_filename', 't/data/empty_file' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); mock_execute_script_and_check_output( $script_name, \%scripts_and_expected_files ); done_testing();Roary-3.8.0/t/Bio/Roary/CommandLine/QueryRoary.t000077500000000000000000000115541304207556500214030ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::QueryRoary'); } my $script_name = 'Bio::Roary::CommandLine::QueryRoary'; my $cwd = getcwd(); system('touch empty_file'); system('touch empty_file2'); my %scripts_and_expected_files = ( '-g t/data/example_groups -a gene_multifasta -n group_2 t/data/example_1.faa t/data/example_2.faa' => [ 'pan_genome_results_group_2.fa', 't/data/expected_output_groups_group_2.fa' ], '-g t/data/example_groups -a gene_multifasta -n group_5 t/data/example_1.faa t/data/example_2.faa ' => [ 'pan_genome_results_group_5.fa', 't/data/expected_output_groups_group_5.fa' ], '-g t/data/example_groups -a gene_multifasta -n group_2,group_5 t/data/example_1.faa t/data/example_2.faa' => [ 'pan_genome_results_group_5.fa', 't/data/expected_output_groups_group_5.fa' ], '-g t/data/example_groups -a gene_multifasta -n group_5,group_2 t/data/example_1.faa t/data/example_2.faa ' => [ 'pan_genome_results_group_5.fa', 't/data/expected_output_groups_group_5.fa' ], '-g t/data/example_groups -a gene_multifasta -n group_5,group_2 t/data/example_1.faa t/data/example_2.faa ' => [ 'pan_genome_results_group_2.fa', 't/data/expected_output_groups_group_2.fa' ], '-g t/data/example_groups -a gene_multifasta -n group_2,group_5 t/data/example_1.faa t/data/example_2.faa ' => [ 'pan_genome_results_group_2.fa', 't/data/expected_output_groups_group_2.fa' ], '-g t/data/example_groups -n group_which_doesnt_exist t/data/example_1.faa t/data/example_2.faa' => [ 'empty_file', 't/data/empty_file' ], '-g t/data/query_groups -a union t/data/query_1.fa t/data/query_2.fa t/data/query_3.fa' => [ 'pan_genome_results', 't/data/expected_union_of_groups.gg' ], '-g t/data/query_groups -a intersection t/data/query_1.fa t/data/query_2.fa t/data/query_3.fa' => [ 'pan_genome_results', 't/data/expected_intersection_of_groups.gg' ], '-g t/data/query_groups -a complement t/data/query_1.fa t/data/query_2.fa t/data/query_3.fa' => [ 'pan_genome_results', 't/data/expected_complement_of_groups.gg' ], '-g t/data/query_groups -a difference -i t/data/query_1.fa -t t/data/query_2.fa,t/data/query_3.fa' => [ 'set_difference_unique_set_one', 't/data/expected_set_difference_unique_set_one' ], '-g t/data/query_groups -a difference -i t/data/query_1.fa -t t/data/query_2.fa,t/data/query_3.fa' => [ 'set_difference_unique_set_two', 't/data/expected_set_difference_unique_set_two' ], '-g t/data/query_groups -a difference -i t/data/query_1.fa -t t/data/query_2.fa,t/data/query_3.fa' => [ 'set_difference_common_set', 't/data/expected_set_difference_common_set' ], '-g t/data/query_groups -a difference -i t/data/query_1.fa -t t/data/query_2.fa,t/data/query_3.fa ' => [ 'set_difference_unique_set_two_statistics.csv', 't/data/expected_set_difference_unique_set_two_statistics.csv' ], '-g t/data/query_groups -a difference -i t/data/query_1.fa -t t/data/query_2.fa,t/data/query_3.fa ' => [ 'set_difference_unique_set_one_statistics.csv', 't/data/expected_set_difference_unique_set_one_statistics.csv' ], '-g t/data/query_groups -a difference -i t/data/query_1.fa -t t/data/query_2.fa,t/data/query_3.fa ' => [ 'set_difference_common_set_statistics.csv', 't/data/expected_set_difference_common_set_statistics.csv' ], '-g t/data/query_groups -a difference -i t/data/query_1.gff -t t/data/query_2.gff,t/data/query_3.gff' => [ 'set_difference_common_set_statistics.csv', 't/data/expected_gff_set_difference_common_set_statistics.csv' ], '-h' => [ 'empty_file2', 't/data/empty_file' ], ); mock_execute_script_and_check_output_sorted( $script_name, \%scripts_and_expected_files ); unlink('set_difference_unique_set_two') if ( -e 'set_difference_unique_set_two' ); unlink('set_difference_common_set') if ( -e 'set_difference_common_set' ); unlink('pan_genome_results_group_5.fa') if ( -e 'pan_genome_results_group_5.fa' ); unlink('gene_presence_absence.csv') if ( -e 'gene_presence_absence.csv' ); unlink('set_difference_unique_set_two_statistics.csv') if ( -e 'set_difference_unique_set_two_statistics.csv' ); unlink('set_difference_unique_set_one_statistics.csv') if ( -e 'set_difference_unique_set_one_statistics.csv' ); unlink('set_difference_common_set_statistics.csv') if ( -e 'set_difference_common_set_statistics.csv' ); unlink('pan_genome_reference.fa') if ( -e 'pan_genome_reference.fa' ); unlink('set_difference_core_accessory_graph.dot') if ( -e 'set_difference_core_accessory_graph.dot' ); unlink('set_difference_accessory_graph.dot') if ( -e 'set_difference_accessory_graph.dot' ); done_testing(); Roary-3.8.0/t/Bio/Roary/CommandLine/Roary.t000077500000000000000000000221651304207556500203550ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Data::Dumper; use File::Path qw( remove_tree); use File::Which; use File::Path qw(make_path); use Cwd qw(abs_path getcwd); use File::Find::Rule; #Test changes current working directory so relative paths can get out of sync local $ENV{PERL5LIB} = join(':', ("$ENV{PERL5LIB}", abs_path('./lib'), abs_path('./t/lib'))); local $ENV{PATH} = join(':', ("$ENV{PATH}", abs_path('./bin'))); BEGIN { unshift( @INC, abs_path('./lib') ) } BEGIN { unshift( @INC, abs_path('./t/lib') ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::Roary'); use_ok('Bio::Roary::CommandLine::CreatePanGenome'); use Bio::Roary::SequenceLengths; } my $script_name = 'Bio::Roary::CommandLine::Roary'; my $cwd = getcwd(); local $ENV{PATH} = "$ENV{PATH}:./bin"; my %scripts_and_expected_files; system('touch empty_file'); cleanup_files(); %scripts_and_expected_files = ( ' -j Parallel --dont_split_groups t/data/query_1.gff t/data/query_2.gff t/data/query_5.gff ' => [ 'gene_presence_absence.csv', 't/data/overall_gene_presence_absence.csv' ], ' -j Local -t 1 --dont_split_groups t/data/genbank_gbff/genbank1.gff t/data/genbank_gbff/genbank2.gff t/data/genbank_gbff/genbank3.gff' => [ 'gene_presence_absence.csv', 't/data/genbank_gbff/genbank_gene_presence_absence.csv' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); mock_execute_script_and_check_output_sorted( $script_name, \%scripts_and_expected_files, [ 0, 6, 7, 8, 9 ] ); cleanup_files(); stderr_should_have($script_name,'-a', 'Looking for'); my $current_cwd = getcwd(); stderr_should_have($script_name,'-v --output_directory t/data/directory_which_doesnt_exist t/data/query_1.gff t/data/query_2.gff t/data/query_5.gff', 'Output directory created'); ok( ( -e 't/data/directory_which_doesnt_exist/clustered_proteins' ), 'pan genome files should be in directory' ); is(getcwd(),$current_cwd , 'current working directory should not have changed after script is finished'); SKIP: { skip "prank not installed", 11 unless ( which('prank') ); %scripts_and_expected_files = ( '-j Local --dont_delete_files --dont_split_groups --output_multifasta_files t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'pan_genome_sequences/mdoH.fa.aln', 't/data/mdoH.fa.aln' ], ); mock_execute_script_and_check_output( $script_name, \%scripts_and_expected_files ); ok( -e 'core_gene_alignment.aln', 'Core gene alignment exists' ); ok( my $seq_len = Bio::Roary::SequenceLengths->new( fasta_file => 'core_gene_alignment.aln', ), 'Check size of the core_gene_alignment.aln init' ); my @keys = keys %{ $seq_len->sequence_lengths }; is( $seq_len->sequence_lengths->{ $keys[0] }, 64983, 'length of first sequence' ); ok( -e 'core_alignment_header.embl', 'Core gene alignment header exists' ); ok( -e 'accessory.tab' ); ok( -e 'core_accessory.tab' ); ok( -e 'number_of_conserved_genes.Rtab' ); ok( -e 'number_of_genes_in_pan_genome.Rtab' ); ok( -e 'number_of_new_genes.Rtab' ); ok( -e 'number_of_unique_genes.Rtab' ); ok( -e 'blast_identity_frequency.Rtab' ); cleanup_files(); %scripts_and_expected_files = ( '-j Local --output_multifasta_files t/data/core_alignment_gene_lookup/query_1.gff t/data/core_alignment_gene_lookup/query_2.gff t/data/core_alignment_gene_lookup/query_3.gff' => [ 'core_gene_alignment.aln', 't/data/core_alignment_gene_lookup/expected_core_gene_alignment.aln' ], ); mock_execute_script_and_check_output( $script_name, \%scripts_and_expected_files ); cleanup_files(); } SKIP: { skip "extended tests not run", 40 unless ( defined($ENV{ROARY_FULL_TESTS})); %scripts_and_expected_files = ( '-o some_different_output -i 90 -p 2 --translation_table 1 t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'some_different_output', 't/data/expected_some_different_output' ], ); mock_execute_script_and_check_output_sorted( $script_name, \%scripts_and_expected_files, [ 0 ] ); stderr_should_have($script_name,'--translation_table 1 -o some_different_output --core_definition 60 -p 2 -e --mafft --group_limit 10 t/data/real_data_1.gff t/data/real_data_2.gff', 'Exiting early because number of clusters is too high'); stderr_should_have($script_name,'--verbose_stats --group_limit 10 -e t/data/query_1.gff t/data/query_2.gff t/data/query_5.gff', 'Exiting early because number of clusters is too high'); stderr_should_not_have($script_name,'-e --group_limit 10 t/data/query_1.gff t/data/query_2.gff t/data/query_5.gff ', 'Cant access the multifasta base directory'); stderr_should_have($script_name,'-i 90 --core_definition 60 -p 2 -v t/data/real_data_1.gff t/data/real_data_2.gff ','Cleaning up files'); stderr_should_have($script_name,'-i 30 t/data/query_1.gff t/data/query_2.gff t/data/query_5.gff','The percentage identity is too low'); stderr_should_not_have($script_name,'--dont_delete_files -v t/data/query_1.gff t/data/query_2.gff t/data/query_5.gff ','Cleaning up files'); stderr_should_have($script_name,'-v --group_limit 100000 -e t/data/query_1.gff t/data/query_2.gff t/data/query_5.gff ' ,'Running command: pan_genome_core_alignment'); stderr_should_have($script_name,'--translation_table 1 -v t/data/real_data_1.gff t/data/real_data_2.gff ' ,'Cleaning up files'); stderr_should_have($script_name,'-e -v t/data/real_data_1.gff t/data/real_data_2.gff ','Creating files with the nucleotide sequences for every cluster'); SKIP: { skip "kraken not installed", 2 unless ( which('kraken') ); skip "kraken-report not installed", 2 unless ( which('kraken-report') ); stderr_should_have($script_name,'-v --qc t/data/real_data_1.gff t/data/real_data_2.gff' ,'Running Kraken on each input assembly'); } %scripts_and_expected_files = ( # output '-o some_different_output -e --dont_delete_files t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'pan_genome_sequences/mdoH.fa.aln', 't/data/mdoH.fa.aln' ], '-o some_different_output --core_definition 60 t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'summary_statistics.txt', 't/data/expected_core_60_summary_statistics.txt' ], '-e -i 95.3 --translation_table 1 -v --group_limit 100000 --qc t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'core_gene_alignment.aln', 't/data/expected_real_data_core_gene_alignment.aln' ], '-e --verbose_stats t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'core_gene_alignment.aln', 't/data/expected_real_data_core_gene_alignment.aln' ], '--core_definition 60 t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'summary_statistics.txt', 't/data/expected_core_60_summary_statistics.txt' ], '-p 2 -e --dont_delete_files t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'pan_genome_sequences/mdoH.fa.aln', 't/data/mdoH.fa.aln' ], '-p 2 --core_definition 60 t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'summary_statistics.txt', 't/data/expected_core_60_summary_statistics.txt' ], '-p 2 -e --mafft t/data/real_data_1.gff t/data/real_data_2.gff' => [ 'core_gene_alignment.aln', 't/data/expected_mafft_real_data_core_gene_alignment.aln' ], ); mock_execute_script_and_check_output_sorted( $script_name, \%scripts_and_expected_files ); } cleanup_files(); done_testing(); sub cleanup_files { remove_tree('pan_genome_sequences'); remove_tree('fixed_input_files'); remove_tree('t/data/directory_which_doesnt_exist'); remove_tree('locus_tags_gffs_output'); unlink('_blast_results'); unlink('_clustered'); unlink('_clustered.bak.clstr'); unlink('_clustered.clstr'); unlink('_combined_files'); unlink('_combined_files.groups'); unlink('_fasta_files'); unlink('_gff_files'); unlink('_inflated_mcl_groups'); unlink('_inflated_unsplit_mcl_groups'); unlink('_labeled_mcl_groups'); unlink('_uninflated_mcl_groups'); unlink('accessory.header.embl'); unlink('accessory.header.tab'); unlink('accessory.tab'); unlink('blast_identity_frequency.Rtab'); unlink('clustered_proteins'); unlink('core_accessory.header.embl'); unlink('core_accessory.header.tab'); unlink('core_accessory.tab'); unlink('core_gene_alignment.aln'); unlink('database_masking.asnb'); unlink('example_1.faa.tmp.filtered.fa'); unlink('example_2.faa.tmp.filtered.fa'); unlink('example_3.faa.tmp.filtered.fa'); unlink('gene_presence_absence.csv'); unlink('number_of_conserved_genes.Rtab'); unlink('number_of_genes_in_pan_genome.Rtab'); unlink('number_of_new_genes.Rtab'); unlink('number_of_unique_genes.Rtab'); unlink('pan_genome.fa'); unlink('query_1.gff.proteome.faa'); unlink('query_2.gff.proteome.faa'); unlink('query_3.gff.proteome.faa'); unlink('query_5.gff.proteome.faa'); unlink('real_data_1.gff.proteome.faa'); unlink('real_data_2.gff.proteome.faa'); unlink('pan_genome_reference.fa'); unlink('accessory_graph.dot'); unlink('core_accessory_graph.dot'); unlink('some_different_output'); unlink('core_alignment_header.embl'); } Roary-3.8.0/t/Bio/Roary/CommandLine/RoaryCoreAlignment.t000066400000000000000000000015321304207556500230150ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::RoaryCoreAlignment'); } my $script_name = 'Bio::Roary::CommandLine::RoaryCoreAlignment'; system('touch empty_file'); my %scripts_and_expected_files = ( '-m t/data/core_alignment -s t/data/core_alignment.csv' => [ 'core_gene_alignment.aln', 't/data/expected_core_gene_alignment.aln' ], '-m t/data/core_alignment -s t/data/core_alignment_core0.66.csv --core_definition 0.66' => [ 'core_gene_alignment.aln', 't/data/expected_core_gene_alignment_core0.66.aln' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); mock_execute_script_and_check_output( $script_name, \%scripts_and_expected_files ); done_testing(); Roary-3.8.0/t/Bio/Roary/CommandLine/RoaryPostAnalysis.t000077500000000000000000000110731304207556500227230ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Data::Dumper; use File::Path qw( remove_tree); use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::RoaryPostAnalysis'); } my $script_name = 'Bio::Roary::CommandLine::RoaryPostAnalysis'; my $cwd = getcwd(); local $ENV{PATH} = "$ENV{PATH}:./bin"; system('cp t/data/post_analysis/* .'); system('touch empty_file'); my %scripts_and_expected_files = ( '-o clustered_proteins -p pan_genome.fa -s gene_presence_absence.csv -c _clustered.clstr -i _gff_files -f _fasta_files -j Local --dont_create_rplots --dont_split_groups' => [ 'clustered_proteins', 't/data/clustered_proteins_post_analysis' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); SKIP: { skip "Tests dont take variablity into account", 2 if(1); mock_execute_script_and_check_output_sorted_groups( $script_name, \%scripts_and_expected_files ); ok( -e 'number_of_unique_genes.Rtab', 'number_of_unique_genes.Rtab exists'); ok( -e 'number_of_new_genes.Rtab', 'number_of_new_genes exists'); ok( -e 'number_of_genes_in_pan_genome.Rtab', 'number_of_genes_in_pan_genome exists'); ok( -e 'number_of_conserved_genes.Rtab','number_of_conserved_genes'); ok( -e 'gene_presence_absence.csv', 'gene_presence_absence exists'); ok( -e 'core_accessory.tab', 'core_accessory.tab exists'); ok( -e 'core_accessory.header.embl','core_accessory.header.embl exists'); ok( -e 'accessory.tab','accessory.tab exists'); ok( -e 'accessory.header.embl','accessory.header.embl exists'); ok( -e 'summary_statistics.txt' ,'summary_statistics.txt exists'); compare_tab_files_with_variable_coordinates('accessory.header.embl', 't/data/post_analysis_expected/accessory.header.embl'); compare_tab_files_with_variable_coordinates('accessory.tab', 't/data/post_analysis_expected/accessory.tab'); compare_tab_files_with_variable_coordinates('core_accessory.header.embl', 't/data/post_analysis_expected/core_accessory.header.embl'); compare_tab_files_with_variable_coordinates('core_accessory.tab', 't/data/post_analysis_expected/core_accessory.tab'); cleanup_files(); system('cp t/data/post_analysis/* .'); system('touch empty_file'); %scripts_and_expected_files = ( '-t 1 -o clustered_proteins -p pan_genome.fa -s gene_presence_absence.csv -c _clustered.clstr -i _gff_files -f _fasta_files -j Local --dont_create_rplots --dont_split_groups' => [ 'clustered_proteins', 't/data/clustered_proteins_post_analysis' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); mock_execute_script_and_check_output_sorted_groups( $script_name, \%scripts_and_expected_files ); ok( -e 'number_of_unique_genes.Rtab', 'number_of_unique_genes.Rtab exists'); ok( -e 'number_of_new_genes.Rtab', 'number_of_new_genes exists'); ok( -e 'number_of_genes_in_pan_genome.Rtab', 'number_of_genes_in_pan_genome exists'); ok( -e 'number_of_conserved_genes.Rtab','number_of_conserved_genes'); ok( -e 'gene_presence_absence.csv', 'gene_presence_absence exists'); ok( -e 'core_accessory.tab', 'core_accessory.tab exists'); ok( -e 'core_accessory.header.embl','core_accessory.header.embl exists'); ok( -e 'accessory.tab','accessory.tab exists'); ok( -e 'accessory.header.embl','accessory.header.embl exists'); compare_tab_files_with_variable_coordinates('accessory.header.embl', 't/data/post_analysis_expected/accessory.header.embl'); compare_tab_files_with_variable_coordinates('accessory.tab', 't/data/post_analysis_expected/accessory.tab'); compare_tab_files_with_variable_coordinates('core_accessory.header.embl', 't/data/post_analysis_expected/core_accessory.header.embl'); compare_tab_files_with_variable_coordinates('core_accessory.tab', 't/data/post_analysis_expected/core_accessory.tab'); } cleanup_files(); done_testing(); sub cleanup_files { unlink('_clustered'); unlink('_clustered.bak.clstr'); unlink('_clustered.clstr'); unlink('_combined_files'); unlink('_combined_files.groups'); unlink('_fasta_files'); unlink('_gff_files'); unlink('_uninflated_mcl_groups'); unlink('query_1.gff.proteome.faa'); unlink('query_2.gff.proteome.faa'); unlink('query_6.gff.proteome.faa'); unlink('accessory.header.embl'); unlink('accessory.tab'); unlink('core_accessory.header.embl'); unlink('core_accessory.tab'); unlink('gene_presence_absence.csv'); unlink('number_of_unique_genes.Rtab'); unlink('number_of_new_genes.Rtab'); unlink('number_of_genes_in_pan_genome.Rtab'); unlink('number_of_conserved_genes.Rtab'); } Roary-3.8.0/t/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.t000066400000000000000000000057211304207556500240640ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::RoaryReorderSpreadsheet'); } my $script_name = 'Bio::Roary::CommandLine::RoaryReorderSpreadsheet'; system('touch empty_file'); my %scripts_and_expected_files = ( '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -o different_output_name.csv' => [ 'different_output_name.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -f newick' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth -b height' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_depth_height.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth -b creation' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_depth_creation.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth -b alpha' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_depth_alpha.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a depth -b revalpha' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_depth_revalpha.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth -b height' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_breadth_height.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth -b creation' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_breadth_creation.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth -b alpha' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_breadth_alpha.csv' ], '-t t/data/reorder_isolates.tre -s t/data/reorder_isolates_input.csv -a breadth -b revalpha' => [ 'reordered_spreadsheet.csv', 't/data/reorder_isolates_expected_output_breadth_revalpha.csv' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); mock_execute_script_and_check_output( $script_name, \%scripts_and_expected_files ); done_testing(); Roary-3.8.0/t/Bio/Roary/CommandLine/TransferAnnotationToGroups.t000066400000000000000000000013551304207556500245760ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { use Test::Most; use_ok('Bio::Roary::CommandLine::TransferAnnotationToGroups'); } my $script_name = 'Bio::Roary::CommandLine::TransferAnnotationToGroups'; my $cwd = getcwd(); system('touch empty_file'); my %scripts_and_expected_files = ( '-g t/data/query_groups t/data/query_1.gff t/data/query_2.gff t/data/query_3.gff' => [ 'reannotated_groups', 't/data/expected_reannotated_groups_file' ], '-h' => [ 'empty_file', 't/data/empty_file' ], ); mock_execute_script_and_check_output_sorted( $script_name, \%scripts_and_expected_files ); done_testing(); Roary-3.8.0/t/Bio/Roary/ContigsToGeneIDsFromGFF.t000077500000000000000000000044541304207556500213530ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::ContigsToGeneIDsFromGFF'); } ok( my $obj = Bio::Roary::ContigsToGeneIDsFromGFF->new( gff_file => 't/data/query_1.gff' ), 'Initialise contigs to gene ids obj' ); is_deeply( $obj->contig_to_ids, { 'abc|SC|contig000001' => [ '1_1', 'abc_00002', 'abc_00003', 'abc_00004', '1_2', 'abc_00006', '1_3', 'abc_00008', 'abc_01705', 'abc_00010', 'abc_00011', 'abc_00012', 'abc_00013', 'abc_00014', '1_6', 'abc_00016' ] }, 'Contigs match expected with standard output' ); ok( $obj = Bio::Roary::ContigsToGeneIDsFromGFF->new( gff_file => 't/data/query_1_alternative_patterns.gff' ), 'Initialise contigs to gene ids obj with alternative ID patterns' ); is_deeply( $obj->contig_to_ids, { 'abc|SC|contig000001' => [ '1_1', 'abc_00002', 'abc_00003', 'abc_00004', '1_2', 'abc_00006' ] }, 'Contigs match expected with alternative output' ); is_deeply( $obj->_genes_annotation, [ { 'database_annotation_exists' => 1, 'product' => 'superantigen-like protein', 'end' => '3337', 'start' => '2621', 'contig' => 'abc|SC|contig000001', 'id_name' => 'abc_00004' }, { 'database_annotation_exists' => 1, 'product' => 'hypothetical protein', 'end' => '4170', 'start' => '3445', 'contig' => 'abc|SC|contig000001', 'id_name' => '1_2' }, { 'database_annotation_exists' => 1, 'product' => 'superantigen-like protein', 'end' => '4990', 'start' => '4265', 'contig' => 'abc|SC|contig000001', 'id_name' => 'abc_00006' } ], 'Product annotation with non standard format' ); done_testing(); Roary-3.8.0/t/Bio/Roary/EmblGroups.t000066400000000000000000000044231304207556500171440ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::Output::EmblGroups'); } my $annotate_groups = Bio::Roary::AnnotateGroups->new( gff_files => ['t/data/query_1.gff','t/data/query_2.gff','t/data/query_3.gff'], groups_filename => 't/data/query_groups', ); my $analyse_groups = Bio::Roary::AnalyseGroups->new( fasta_files => ['t/data/query_1.fa','t/data/query_2.fa','t/data/query_3.fa'], groups_filename => 't/data/query_groups' ); ok(my $obj = Bio::Roary::Output::EmblGroups->new( output_filename => 'group_statitics.csv', annotate_groups_obj => $annotate_groups, analyse_groups_obj => $analyse_groups ), 'initialise embl groups'); is($obj->_get_heat_map_colour(['a','b','c','d'], 4),2, 'heatmap colour'); is($obj->_get_heat_map_colour(['a','b','c'], 4),16, 'heatmap colour'); is($obj->_get_heat_map_colour(['a','b'], 4),3, 'heatmap colour'); is($obj->_get_heat_map_colour(['a'], 4),4, 'heatmap colour'); is($obj->_get_heat_map_colour(['a','b','c','d','e','f','g','h','i','j'], 10),2, 'heatmap colour loop over each colour 10'); is($obj->_get_heat_map_colour(['a','b','c','d','e','f','g','h','i' ], 10),15, 'heatmap colour loop over each colour 9'); is($obj->_get_heat_map_colour(['a','b','c','d','e','f','g','h' ], 10),16, 'heatmap colour loop over each colour 8'); is($obj->_get_heat_map_colour(['a','b','c','d','e','f','g' ], 10),10, 'heatmap colour loop over each colour 7'); is($obj->_get_heat_map_colour(['a','b','c','d','e','f' ], 10),7, 'heatmap colour loop over each colour 6'); is($obj->_get_heat_map_colour(['a','b','c','d','e' ], 10),3, 'heatmap colour loop over each colour 5'); is($obj->_get_heat_map_colour(['a','b','c','d' ], 10),8, 'heatmap colour loop over each colour 4'); is($obj->_get_heat_map_colour(['a','b','c' ], 10),9, 'heatmap colour loop over each colour 3'); is($obj->_get_heat_map_colour(['a','b' ], 10),5, 'heatmap colour loop over each colour 2'); is($obj->_get_heat_map_colour(['a' ], 10),4, 'heatmap colour loop over each colour 1 '); done_testing(); Roary-3.8.0/t/Bio/Roary/External/000077500000000000000000000000001304207556500164575ustar00rootroot00000000000000Roary-3.8.0/t/Bio/Roary/External/Blastp.t000066400000000000000000000015031304207556500200700ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } use Bio::Roary::External::Makeblastdb; BEGIN { use Test::Most; use_ok('Bio::Roary::External::Blastp'); } my $cwd = getcwd(); my $obj; ok($obj = Bio::Roary::External::Blastp->new( fasta_file => 't/data/some_fasta_file.fa', blast_database => 'some_blast_database', exec => $cwd.'/t/bin/dummy_blastp', ),'initialise object'); is($obj->_command_to_run, $cwd.'/t/bin/dummy_blastp -query t/data/some_fasta_file.fa -db some_blast_database -evalue 1e-06 -num_threads 1 -outfmt 6 -max_target_seqs 2000 | awk \'{ if ($3 > 98) print $0;}\' 2> /dev/null 1> results.out', 'Command constructed as expected'); ok($obj->run(), 'run dummy command'); unlink('results.out'); done_testing(); Roary-3.8.0/t/Bio/Roary/External/Cdhit.t000066400000000000000000000021641304207556500177020ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::External::Cdhit'); } my $cwd = getcwd(); my $obj; ok($obj = Bio::Roary::External::Cdhit->new( input_file => 't/data/some_fasta_file.fa', output_base => 'output', exec => $cwd.'/t/bin/dummy_cd-hit', ),'initialise object'); is($obj->_command_to_run, $cwd.'/t/bin/dummy_cd-hit -i t/data/some_fasta_file.fa -o output -T 1 -M 1800 -g 1 -s 1 -d 256 -c 1 > /dev/null 2>&1', 'Command constructed as expected'); ok($obj->run(), 'run dummy command'); unlink('output'); unlink('output.clstr'); unlink('output.bak.clstr'); ok($obj = Bio::Roary::External::Cdhit->new( input_file => 't/data/some_fasta_file.fa', output_base => 'output', exec => $cwd.'/t/bin/dummy_cd-hit', cpus => 1000 ),'initialise object with lots of threads'); is($obj->_command_to_run, $cwd.'/t/bin/dummy_cd-hit -i t/data/some_fasta_file.fa -o output -T 40 -M 1800 -g 1 -s 1 -d 256 -c 1 > /dev/null 2>&1', 'number of threads capped at a lower level'); done_testing(); Roary-3.8.0/t/Bio/Roary/External/CheckTools.t000066400000000000000000000012361304207556500207040ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Cwd; use Test::Output; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::External::CheckTools'); } ok( my $check_tools = Bio::Roary::External::CheckTools->new(), 'initialise checking for tools' ); for my $tool ( ( 'parallel', 'blastp', 'makeblastdb', 'mcl', 'bedtools', 'prank', 'mafft', 'grep', 'sed', 'awk', ) ) { my $pattern = "Looking for '$tool' - found "; stderr_like { $check_tools->check_tool($tool); } qr/$pattern/, "Check for $tool"; } stderr_like { $check_tools->check_all_tools; } qr/Looking for /, "Check for all tools"; 1; done_testing(); Roary-3.8.0/t/Bio/Roary/External/Mafft.t000066400000000000000000000020731304207556500177030ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Cwd; use Test::Files; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use Bio::Roary::SortFasta; use_ok('Bio::Roary::External::Mafft'); } ok( my $obj = Bio::Roary::External::Mafft->new( input_filename => 't/data/mafft_input.fa', output_filename => 't/data/mafft_input.fa.aln', job_runner => 'Local' ), 'initialise mafft obj' ); is( $obj->_command_to_run, 'mafft --auto --quiet t/data/mafft_input.fa > t/data/mafft_input.fa.aln', 'Command constructed as expected' ); ok( $obj->run(), 'run mafft' ); ok(-e 't/data/mafft_input.fa.aln', 'output file exists'); my $sort_fasta_after_revtrans = Bio::Roary::SortFasta->new( input_filename => 't/data/mafft_input.fa.aln', remove_nnn_from_end => 1, ); $sort_fasta_after_revtrans->sort_fasta->replace_input_with_output_file; compare_ok( 't/data/mafft_input.fa.aln', 't/data/expected_mafft_input.fa.aln', "output for mafft matches" ); unlink('t/data/mafft_input.fa.aln'); done_testing(); Roary-3.8.0/t/Bio/Roary/External/Makeblastdb.t000077500000000000000000000014471304207556500210660ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::External::Makeblastdb'); } my $cwd = getcwd(); my $obj; ok($obj = Bio::Roary::External::Makeblastdb->new( fasta_file => 't/data/some_fasta_file.fa', exec => $cwd.'/t/bin/dummy_makeblastdb', mask_data => 'masking_data_file' ),'initialise object'); is($obj->_command_to_run, $cwd.'/t/bin/dummy_makeblastdb -in t/data/some_fasta_file.fa -dbtype prot -out '.$obj->_working_directory->dirname().'/output_contigs -logfile /dev/null', 'Command constructed as expected'); ok($obj->run(), 'run dummy command'); unlink("output_contigs.phr"); unlink("output_contigs.pin"); unlink("output_contigs.psq"); 1; done_testing(); Roary-3.8.0/t/Bio/Roary/External/Mcl.t000066400000000000000000000022561304207556500173640ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Cwd; use Test::Files; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::External::Mcl'); } my $cwd = getcwd(); my $obj; ok( $obj = Bio::Roary::External::Mcl->new( blast_results => 'some_blast_results', mcxdeblast_exec => $cwd . '/t/bin/dummy_mcxdeblast', mcl_exec => $cwd . '/t/bin/dummy_mcl', output_file => 'output.groups' ), 'initialise object with dummy values' ); is( $obj->_command_to_run, $cwd . '/t/bin/dummy_mcxdeblast -m9 --score=r --line-mode=abc some_blast_results 2> /dev/null | ' . $cwd . '/t/bin/dummy_mcl - --abc -I 1.5 -o output.groups > /dev/null 2>&1', 'Command constructed as expected' ); ok( $obj->run(), 'run dummy command' ); unlink('output.groups'); ok( $obj = Bio::Roary::External::Mcl->new( blast_results => 't/data/blast_results', ), 'initialise object with real values' ); ok( $obj->run(), 'run the real command' ); compare_ok('output_groups', 't/data/expected_output_groups', 'outgroups as expected'); unlink('output_groups'); 1; done_testing(); Roary-3.8.0/t/Bio/Roary/External/Prank.t000077500000000000000000000022271304207556500177250ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Cwd; use Test::Files; use Bio::Roary::SortFasta; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::External::Prank'); } ok( my $obj = Bio::Roary::External::Prank->new( input_filename => 't/data/prank_input.fa', output_filename => 't/data/prank_input.fa.aln', job_runner => 'Local' ), 'initialise prank obj' ); is( $obj->_command_to_run, 'prank -d=t/data/prank_input.fa -o=t/data/prank_input.fa.aln -codon -F -quiet -once > /dev/null 2>&1 && mv t/data/prank_input.fa.aln*.fas t/data/prank_input.fa.aln', 'Command constructed as expected' ); ok( $obj->run(), 'run prank' ); ok(-e 't/data/prank_input.fa.aln', 'output file exists'); my $sort_fasta_after_revtrans = Bio::Roary::SortFasta->new( input_filename => 't/data/prank_input.fa.aln', remove_nnn_from_end => 1, ); $sort_fasta_after_revtrans->sort_fasta->replace_input_with_output_file; compare_ok( 't/data/prank_input.fa.aln', 't/data/expected_prank_input.fa.aln', "output for prank matches" ); unlink('t/data/prank_input.fa.aln'); done_testing(); Roary-3.8.0/t/Bio/Roary/ExtractCoreGenesFromSpreadsheet.t000077500000000000000000000015611304207556500233110ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::ExtractCoreGenesFromSpreadsheet'); } my $obj; ok($obj = Bio::Roary::ExtractCoreGenesFromSpreadsheet->new( spreadsheet => 't/data/core_group_statistics.csv', ),'initalise obj'); is_deeply($obj->ordered_core_genes, ['argF','speH','group_5'], 'Correct ordering'); is_deeply($obj->sample_names_to_genes, { 'query_2' => { '2_3' => 1, '2_7' => 1, '2_2' => 1 }, 'query_1' => { '1_6' => 1, '1_3' => 1, '1_2' => 1 } }, 'Correct of sample names to genes is correct'); done_testing(); Roary-3.8.0/t/Bio/Roary/ExtractProteomeFromGFFs.t000077500000000000000000000103671304207556500215530ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use File::Basename; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::ExtractProteomeFromGFFs'); } my $plot_groups_obj; ok( $plot_groups_obj = Bio::Roary::ExtractProteomeFromGFFs->new( gff_files => [ 't/data/example_annotation.gff', 't/data/example_annotation_2.gff' ], ), 'initialise object' ); my @sorted_fasta_files = map { basename($_) } sort( @{ $plot_groups_obj->fasta_files() } ); my @sorted_expected_files = sort( ( 'example_annotation.gff.proteome.faa', 'example_annotation_2.gff.proteome.faa' ) ); is_deeply( \@sorted_fasta_files, \@sorted_expected_files, 'one file created' ); compare_ok( $plot_groups_obj->fasta_files->[0] , 't/data/example_annotation.gff.proteome.faa.expected', 'content of proteome 1 as expected' ); unlink('example_annotation.gff.proteome.faa'); unlink('example_annotation_2.gff.proteome.faa'); ok( $plot_groups_obj = Bio::Roary::ExtractProteomeFromGFFs->new( gff_files => [ 't/data/example_annotation_no_fasta_line.gff', 't/data/example_annotation_2.gff' ], ), 'initialise object where one GFF has no FASTA line' ); compare_ok( $plot_groups_obj->fasta_files->[0] , 't/data/example_annotation.gff.proteome.faa.expected', 'content of proteome 1 as expected' ); unlink('example_annotation_no_fasta_line.gff.proteome.faa'); unlink('example_annotation_2.gff.proteome.faa'); ok( $plot_groups_obj = Bio::Roary::ExtractProteomeFromGFFs->new( gff_files => [ 't/data/genbank_gbff/genbank1.gff', 't/data/genbank_gbff/genbank2.gff', 't/data/genbank_gbff/genbank3.gff' ], ), 'initialise object with genbank gff files' ); @sorted_fasta_files = map { basename($_) } sort( @{ $plot_groups_obj->fasta_files() } ); @sorted_expected_files = sort( ( 'genbank1.gff.proteome.faa', 'genbank2.gff.proteome.faa', 'genbank3.gff.proteome.faa' ) ); is_deeply( \@sorted_fasta_files, \@sorted_expected_files, 'GB files created output' ); for my $full_filename ( @{ $plot_groups_obj->fasta_files() } ) { my $base_filename = basename($full_filename); compare_ok($full_filename, 't/data/genbank_gbff/' . $base_filename . '.expected', "content of proteome $full_filename as expected" ); } unlink('genbank1.gff.proteome.faa'); unlink('genbank2.gff.proteome.faa'); unlink('genbank3.gff.proteome.faa'); ok( $plot_groups_obj = Bio::Roary::ExtractProteomeFromGFFs->new( gff_files => [ 't/data/locus_tag_gffs/query_1.gff', 't/data/locus_tag_gffs/query_2.gff', 't/data/locus_tag_gffs/query_3.gff' ], ), 'initialise object with locus tag id gff files' ); @sorted_fasta_files = map { basename($_) } sort( @{ $plot_groups_obj->fasta_files() } ); @sorted_expected_files = sort( ( 'query_1.gff.proteome.faa', 'query_2.gff.proteome.faa', 'query_3.gff.proteome.faa' ) ); is_deeply( \@sorted_fasta_files, \@sorted_expected_files, 'locus tag id files created output' ); for my $full_filename ( @{ $plot_groups_obj->fasta_files() } ) { my $base_filename = basename($full_filename); compare_ok($full_filename, 't/data/locus_tag_gffs/' . $base_filename . '.expected' , "content of proteome $full_filename as expected" ); } unlink('query_1.gff.proteome.faa'); unlink('query_2.gff.proteome.faa'); unlink('query_3.gff.proteome.faa'); ok( $plot_groups_obj = Bio::Roary::ExtractProteomeFromGFFs->new( gff_files => [ 't/data/allow_no_fasta_delimiter/annotation_1.gff', 't/data/allow_no_fasta_delimiter/annotation_2.gff' ], ), 'initialise object with multi contig files' ); @sorted_fasta_files = map { basename($_) } sort( @{ $plot_groups_obj->fasta_files() } ); @sorted_expected_files = sort( ( 'annotation_1.gff.proteome.faa', 'annotation_2.gff.proteome.faa' ) ); is_deeply( \@sorted_fasta_files, \@sorted_expected_files, 'locus tag id files created output' ); for my $full_filename ( @{ $plot_groups_obj->fasta_files() } ) { my $base_filename = basename($full_filename); compare_ok($full_filename, 't/data/allow_no_fasta_delimiter/' . $base_filename . '.expected' , "content of proteome $full_filename as expected" ); } unlink('annotation_1.gff.proteome.faa'); unlink('annotation_2.gff.proteome.faa'); done_testing(); Roary-3.8.0/t/Bio/Roary/FilterFullClusters.t000066400000000000000000000024441304207556500206630ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::FilterFullClusters'); } ok(my $filter_clusters = Bio::Roary::FilterFullClusters->new( clusters_filename => 't/data/clusters_to_inflate', fasta_file => 't/data/clusters_input.fa', number_of_input_files => 6, output_file => 'output_filtered.fa', _greater_than_or_equal => 1, cdhit_input_fasta_file => 't/data/clusters_to_inflate_original_input.fa', cdhit_output_fasta_file => 'filtered_original_input.fa', output_groups_file => 'output_groups', ),'initialise object'); ok($filter_clusters->filter_full_clusters_from_fasta(),'filter the clusters'); ok($filter_clusters->filter_complete_cluster_from_original_fasta(),'filter original input and save full groups'); compare_ok('output_filtered.fa', 't/data/expected_output_filtered.fa', 'content as expected'); compare_ok('output_groups', 't/data/expected_output_groups_cdhit', 'content as expected'); compare_ok('filtered_original_input.fa', 't/data/expected_filtered_original_input.fa', 'content as expected'); unlink('output_groups'); unlink('filtered_original_input.fa'); unlink('output_filtered.fa'); done_testing(); Roary-3.8.0/t/Bio/Roary/GeneNamesFromGFF.t000077500000000000000000000037071304207556500201050ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::GeneNamesFromGFF'); } my $obj; ok( $obj = Bio::Roary::GeneNamesFromGFF->new( gff_file => 't/data/query_1.gff' ), 'initialise reading GFF file' ); is_deeply( $obj->ids_to_gene_name, { '1_3' => 'argF', '1_1' => 'different', '1_2' => 'speH', 'abc_00016' => 'yfnB', 'abc_00008' => 'arcC1' }, 'ids to gene names as expected' ); is_deeply( $obj->ids_to_gene_size, { 'abc_00012' => 188, '1_1' => 959, 'abc_00004' => 716, 'abc_00006' => 725, 'abc_00008' => 935, '1_6' => 134, 'abc_00014' => 134, 'abc_01705' => 1556, 'abc_00013' => 75, 'abc_00010' => 227, '1_2' => 725, 'abc_00011' => 947, 'abc_00016' => 686, '1_3' => 1001, 'abc_00002' => 146, 'abc_00003' => 197 }, 'ids to gene lengths as expected' ); ok( $obj = Bio::Roary::GeneNamesFromGFF->new( gff_file => 't/data/query_2.gff' ), 'initialise reading another GFF file' ); is_deeply( $obj->ids_to_gene_name, { '2_3' => 'argF', '2_1' => 'hly', '2_2' => 'speH', 'abc_00016' => 'yfnB', 'abc_00008' => 'arcC1' }, 'ids to gene names as expected again' ); ok( $obj = Bio::Roary::GeneNamesFromGFF->new( gff_file => 't/data/locus_tag_gffs/query_1.gff' ), 'initialise a GFF file with locus tags only' ); is_deeply( $obj->ids_to_gene_name, { 'abc_00005' => 'speH', 'abc_00007' => 'argF', 'abc_00001' => 'different', 'abc_00016' => 'yfnB', 'abc_00008' => 'arcC1' }, 'ids to gene names with GFF file with locus tags only' ); done_testing(); Roary-3.8.0/t/Bio/Roary/GroupLabels.t000066400000000000000000000010641304207556500173020ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::GroupLabels'); } ok( my $obj = Bio::Roary::GroupLabels->new( groups_filename => 't/data/example_groups_without_labels' ), 'initialise with a groups file' ); ok($obj->add_labels, 'Add labels to groups'); compare_ok($obj->output_filename, 't/data/expected_group_labels', 'groups labeled as expected'); unlink('labelled_groups_file'); done_testing(); Roary-3.8.0/t/Bio/Roary/GroupStatistics.t000077500000000000000000000055071304207556500202430ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::GroupStatistics'); } my $annotate_groups = Bio::Roary::AnnotateGroups->new( gff_files => ['t/data/query_1.gff','t/data/query_2.gff','t/data/query_3.gff'], groups_filename => 't/data/query_groups', ); my $analyse_groups = Bio::Roary::AnalyseGroups->new( fasta_files => ['t/data/query_1.fa','t/data/query_2.fa','t/data/query_3.fa'], groups_filename => 't/data/query_groups' ); my $obj; ok($obj = Bio::Roary::GroupStatistics->new( annotate_groups_obj => $annotate_groups, analyse_groups_obj => $analyse_groups ),'Initialise group statistics object'); ok($obj->create_spreadsheet,'Create the CSV file'); ok(-e 'gene_presence_absence.csv', 'CSV file exists'); compare_ok('gene_presence_absence.csv','t/data/expected_group_statitics.csv', 'Spreadsheet content as expected'); ok($obj->create_rtab,'Create the Rtab file'); ok(-e 'gene_presence_absence.Rtab', 'Rtab file exists'); compare_ok('gene_presence_absence.Rtab','t/data/expected_gene_presence_and_absence.Rtab', 'Rtab matrix content as expected'); unlink('gene_presence_absence.csv'); unlink('gene_presence_absence.Rtab'); ############################ my $annotate_groups_2 = Bio::Roary::AnnotateGroups->new( gff_files => ['t/data/query_1.gff','t/data/query_2.gff','t/data/query_3.gff','t/data/query_4_missing_genes.gff'], groups_filename => 't/data/query_groups_missing_genes', ); my $analyse_groups_2 = Bio::Roary::AnalyseGroups->new( fasta_files => ['t/data/query_1.fa','t/data/query_2.fa','t/data/query_3.fa','t/data/query_4_missing_genes.fa'], groups_filename => 't/data/query_groups_missing_genes' ); ok($obj = Bio::Roary::GroupStatistics->new( annotate_groups_obj => $annotate_groups_2, analyse_groups_obj => $analyse_groups_2, output_filename => 'missing_genes_stats.csv' ),'Initialise group statistics object where one isolate has only 1 gene'); ok($obj->create_spreadsheet,'Create the CSV file'); ok(-e 'missing_genes_stats.csv', 'CSV file exists'); compare_ok('missing_genes_stats.csv','t/data/expected_group_statitics_missing_genes.csv', 'Spreadsheet content as expected with missing genes'); unlink('missing_genes_stats.csv'); ## TEST VERBOSE STATS ## ok($obj = Bio::Roary::GroupStatistics->new( annotate_groups_obj => $annotate_groups, analyse_groups_obj => $analyse_groups, _verbose => 1, output_filename => 'verbose_stats.csv' ),'Initialise group statistics object'); ok($obj->create_spreadsheet,'Create the CSV file'); ok(-e 'verbose_stats.csv', 'CSV file exists'); compare_ok('verbose_stats.csv','t/data/expected_group_statitics_verbose.csv', 'Verbose spreadsheet content as expected'); unlink('verbose_stats.csv'); done_testing(); Roary-3.8.0/t/Bio/Roary/InflateClusters.t000066400000000000000000000017521304207556500201760ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::InflateClusters'); } my $obj; ok( $obj = Bio::Roary::InflateClusters->new( clusters_filename => 't/data/clustersfile', mcl_filename => 't/data/mcl_file', output_file => 'example.output' ),'initialise object'); ok($obj->inflate,'inflate the results'); compare_ok('example.output','t/data/expected_inflated_results', 'inflated results as expected'); unlink('example.output'); ok( $obj = Bio::Roary::InflateClusters->new( clusters_filename => 't/data/clusters_to_inflate', mcl_filename => 't/data/clusters_to_inflate.mcl', output_file => 'example.output' ),'initialise object'); ok($obj->inflate,'inflate the results'); compare_ok('example.output','t/data/expected_clusters_to_inflate', 'inflated results as expected'); unlink('example.output'); done_testing(); Roary-3.8.0/t/Bio/Roary/OrderGenes.t000077500000000000000000000132531304207556500171260ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use File::Slurper 'read_text'; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::OrderGenes'); use Bio::Roary::AnalyseGroups; } my $no_accessory_100 = order_genes_obj( 't/data/accessory_graphs/no_accessory', 1 ); my $no_accessory_50 = order_genes_obj( 't/data/accessory_graphs/no_accessory', 0.5 ); my $one_bubble_100 = order_genes_obj( 't/data/accessory_graphs/one_bubble', 1 ); my $one_bubble_50 = order_genes_obj( 't/data/accessory_graphs/one_bubble', 0.5 ); my $one_branch_100 = order_genes_obj( 't/data/accessory_graphs/one_branch', 1 ); my $one_branch_50 = order_genes_obj( 't/data/accessory_graphs/one_branch', 0.5 ); my $two_graphs_100 = order_genes_obj( 't/data/accessory_graphs/two_graphs', 1 ); my $two_graphs_50 = order_genes_obj( 't/data/accessory_graphs/two_graphs', 0.5 ); my $single_gene_100 = order_genes_obj( 't/data/accessory_graphs/single_gene_contig', 1 ); my $single_gene_50 = order_genes_obj( 't/data/accessory_graphs/single_gene_contig', 0.5 ); my $core_deletion_100 = order_genes_obj( 't/data/accessory_graphs/core_deletion', 1 ); my $core_deletion_50 = order_genes_obj( 't/data/accessory_graphs/core_deletion', 0.5 ); my $core_island_100 = order_genes_obj( 't/data/accessory_graphs/core_island', 1 ); my $core_island_50 = order_genes_obj( 't/data/accessory_graphs/core_island', 0.5 ); cleanup(); my $analyse_groups = Bio::Roary::AnalyseGroups->new( fasta_files => [ 't/data/accessory_graphs/file_1.fa', 't/data/accessory_graphs/file_2.fa', 't/data/accessory_graphs/file_3.fa' ], groups_filename => 't/data/accessory_graphs/core_island' ); ok( my $obj = Bio::Roary::OrderGenes->new( analyse_groups_obj => $analyse_groups, gff_files => [ 't/data/accessory_graphs/file_1.gff', 't/data/accessory_graphs/file_2.gff', 't/data/accessory_graphs/file_3.gff' ], core_definition => 1, sample_weights => { 'file_1' => 0.5, 'file_2' => 1, 'file_3' => 0.1 } ), "Initialise order genes object for sample weights" ); ok( $obj->groups_to_contigs, 'build the graph for sample weights' ); ok( -e 'core_accessory_graph.dot', 'core accessory graph created for sample weights' ); ok( -e 'accessory_graph.dot', 'accessory graph created for sample weights' ); my $actual_graph = read_text('accessory_graph.dot'); $actual_graph =~ s/group_[\w]/group_X/gi; is_deeply( $actual_graph, read_text('t/data/expected_sample_weights_accessory_graph.dot'), 'graph weights changed' ); # Check how the final graphs get reordered. $obj = Bio::Roary::OrderGenes->new( analyse_groups_obj => $analyse_groups, gff_files => [ 't/data/accessory_graphs/file_1.gff', 't/data/accessory_graphs/file_2.gff', 't/data/accessory_graphs/file_3.gff' ], core_definition => 1, sample_weights => { 'file_1' => 0.5, 'file_2' => 1, 'file_3' => 0.1 }, samples_to_clusters => { 's1' => 'c1', 's2' => 'c1', 's3' => 'c2', 's4' => 'c2' }, ); my @paths_and_weights = ( { path => [ 'g1', 'g2' ], average_weight => 3, sample_names => [ 's1', 's2' ] }, { path => [ 'g5', 'g6' ], average_weight => 2, sample_names => [ 's3', 's4' ] }, { path => [ 'g3', 'g4' ], average_weight => 1, sample_names => [ 's1', 's2' ] } ); my @expected_path_order = ( [ 'g1', 'g2' ], [ 'g3', 'g4' ], [ 'g5', 'g6' ] ); is_deeply( $obj->_order_by_samples_and_weights( \@paths_and_weights ), \@expected_path_order, 'graphs reordered as expected' ); cleanup(); done_testing(); sub order_genes_obj { my ( $groups_filename, $core_definition ) = @_; cleanup(); my $analyse_groups = Bio::Roary::AnalyseGroups->new( fasta_files => [ 't/data/accessory_graphs/file_1.fa', 't/data/accessory_graphs/file_2.fa', 't/data/accessory_graphs/file_3.fa' ], groups_filename => $groups_filename ); ok( my $obj = Bio::Roary::OrderGenes->new( analyse_groups_obj => $analyse_groups, gff_files => [ 't/data/accessory_graphs/file_1.gff', 't/data/accessory_graphs/file_2.gff', 't/data/accessory_graphs/file_3.gff' ], core_definition => $core_definition ), "Initialise order genes object for $groups_filename" ); ok( $obj->groups_to_contigs, 'build the graph' ); check_all_groups_in_output_graph( $groups_filename, $obj->groups_to_contigs, $core_definition ); ok( -e 'core_accessory_graph.dot', 'core accessory graph created' ); ok( -e 'accessory_graph.dot', 'accessory graph created' ); return $obj; } sub check_all_groups_in_output_graph { my ( $groups_filename, $groups_to_contigs, $core_definition ) = @_; open( my $groups_in, $groups_filename ); while (<$groups_in>) { chomp; my $line = $_; next if ( $line eq '' ); my ( $group, $attributes ) = split( ':', $line ); ok( ( $groups_to_contigs->{$group} ), "group $group found in file $groups_filename" ); # Check to see if the accessory groups are tagged properly $attributes =~ s/ //gi; my @sequence_ids = split( /\t/, $attributes ); if ( @sequence_ids >= 3 * $core_definition ) { ok( !defined( $groups_to_contigs->{$group}->{accessory_label} ), "group $group is core so shouldnt have any accessory labels" ); } else { ok( defined( $groups_to_contigs->{$group}->{accessory_label} ), "group $group is accessory so should have accessory label" ); } } } sub cleanup { unlink('core_accessory_graph.dot'); unlink('accessory_graph.dot'); } Roary-3.8.0/t/Bio/Roary/Output/000077500000000000000000000000001304207556500161755ustar00rootroot00000000000000Roary-3.8.0/t/Bio/Roary/Output/CoreGeneAlignmentCoorindatesEMBL.t000066400000000000000000000030771304207556500245520ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL'); } ok( my $core_gene_obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new( multifasta_files => [ 't/data/multifasta_files/1.fa.aln', 't/data/multifasta_files/outof_order.fa.aln', 't/data/multifasta_files/2.fa.aln', 't/data/multifasta_files/3.fa.aln' ], gene_lengths => { 't/data/multifasta_files/1.fa.aln' => 1, 't/data/multifasta_files/outof_order.fa.aln' => 10, 't/data/multifasta_files/2.fa.aln' => 100, 't/data/multifasta_files/3.fa.aln' => 1000 }, output_filename => 'output_name.embl' ), 'initialise core gene obj' ); is('efg',$core_gene_obj->_gene_name_from_filename('t/abc/efg.fa.aln'), 'Get gene name with directory'); is('efg',$core_gene_obj->_gene_name_from_filename('efg.fa.aln'), 'Get gene name with no directory'); is('efg',$core_gene_obj->_gene_name_from_filename('efg'), 'Get gene name where theres no extension'); is('efg',$core_gene_obj->_gene_name_from_filename('efg.fa'), 'Get gene name with partial extension'); ok($core_gene_obj->create_file,'create the embl header file'); compare_ok('output_name.embl', 't/data/multifasta_files/expected_output.embl', 'content of embl file as expected'); is(1112,$core_gene_obj->_current_coordinate,'next coordinate'); unlink('output_name.embl'); done_testing(); Roary-3.8.0/t/Bio/Roary/Output/DifferenceBetweenSets.t000066400000000000000000000025471304207556500225750ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Moose; BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::Output::DifferenceBetweenSets'); } my $plot_groups_obj = Bio::Roary::AnalyseGroups->new( fasta_files => [ 't/data/query_1.fa', 't/data/query_2.fa','t/data/query_3.fa' ], groups_filename => 't/data/query_groups' ); ok(my $obj = Bio::Roary::Output::DifferenceBetweenSets->new( analyse_groups => $plot_groups_obj, input_filenames_sets => [ ['t/data/query_1.fa'], ['t/data/query_2.fa','t/data/query_3.fa'] ] ),'initialise set difference obj'); ok($obj->groups_set_one_unique,'create set one unique'); ok($obj->groups_set_two_unique,'create set two unique'); ok($obj->groups_in_common,'create common set unique'); compare_files('set_difference_unique_set_one','t/data/expected_set_difference_unique_set_one','set one file content as expected'); compare_files('set_difference_unique_set_two','t/data/expected_set_difference_unique_set_two','set two file content as expected'); compare_files('set_difference_common_set','t/data/expected_set_difference_common_set','common set file content as expected'); unlink('set_difference_unique_set_one'); unlink('set_difference_unique_set_two'); unlink('set_difference_common_set'); done_testing(); Roary-3.8.0/t/Bio/Roary/Output/GroupsMultifastaProtein.t000066400000000000000000000011611304207556500232330ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::Output::GroupsMultifastaProtein'); } ok( my $obj = Bio::Roary::Output::GroupsMultifastaProtein->new( nucleotide_fasta_file => 't/data/nuc_multifasta.fa', ), 'initialise creating the nuc fasta obj' ); ok($obj->convert_nucleotide_to_protein(),'perform the conversion'); compare_ok('t/data/nuc_multifasta.faa', 't/data/expected_nuc_multifasta.faa', 'File content as expected'); unlink('t/data/nuc_multifasta.faa'); done_testing(); Roary-3.8.0/t/Bio/Roary/Output/GroupsMultifastas.t000077500000000000000000000025001304207556500220560ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::Output::GroupsMultifastas'); } my $plot_groups_obj = Bio::Roary::AnalyseGroups->new( fasta_files => [ 't/data/example_1.faa', 't/data/example_2.faa' ], groups_filename => 't/data/example_groups' ); ok( my $obj = Bio::Roary::Output::GroupsMultifastas->new( group_names => [ 'group_2', 'group_5' ], analyse_groups => $plot_groups_obj ), 'initialise creating multiple fastas' ); ok( $obj->create_files(), 'Create multiple fasta files' ); # Check that the files have been created ok( -e $obj->output_filename_base . '_group_2.fa', $obj->output_filename_base . '_group_2.fa'.' group created' ); ok( -e $obj->output_filename_base . '_group_5.fa', $obj->output_filename_base . '_group_2.fa'.' group created' ); compare_ok( $obj->output_filename_base . '_group_2.fa' , 't/data/expected_output_groups_group_2_multi.fa', 'group 2 contect as expected' ); compare_ok( $obj->output_filename_base . '_group_5.fa' , 't/data/expected_output_groups_group_5_multi.fa', 'group 5 contect as expected' ); unlink( $obj->output_filename_base . '_group_2.fa' ); unlink( $obj->output_filename_base . '_group_5.fa' ); done_testing(); Roary-3.8.0/t/Bio/Roary/Output/GroupsMultifastasNucleotide.t000066400000000000000000000062111304207556500240720ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use File::Path qw( remove_tree); use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use Test::Output; use_ok('Bio::Roary::Output::GroupsMultifastasNucleotide'); use Bio::Roary::AnnotateGroups; use Bio::Roary::AnalyseGroups; } cleanup_files(); my $gff_files = [ 't/data/query_1.gff', 't/data/query_2.gff','t/data/query_3.gff' ]; my $obj; my $annotate_groups = Bio::Roary::AnnotateGroups->new( gff_files => $gff_files, groups_filename => 't/data/query_groups_reference', ); ok($annotate_groups->reannotate); ok( $obj = Bio::Roary::Output::GroupsMultifastasNucleotide->new( group_names => [ 'group_2', 'group_5' ], gff_files => $gff_files, annotate_groups => $annotate_groups, dont_delete_files => 1, ), 'initialise creating multiple fastas where you dont delete non core files' ); ok( $obj->create_files(), 'Create multiple fasta files where you dont delete non core files' ); compare_ok('pan_genome_sequences/hly.fa', 't/data/pan_genome_sequences/hly.fa', 'Check multifasta content is correct for 3-hly.fa'); compare_ok('pan_genome_sequences/speH.fa','t/data/pan_genome_sequences/speH.fa','Check multifasta content is correct for 2-speH.fa'); compare_ok('pan_genome_sequences/argF.fa','t/data/pan_genome_sequences/argF.fa','Check multifasta content is correct for 2-argF.fa'); ok(-e 'pan_genome_reference.fa','pan genome reference file created'); compare_ok('pan_genome_reference.fa', 't/data/expected_g2_g5_pan_genome_reference.fa', 'pan genome reference as expected'); cleanup_files(); ok( $obj = Bio::Roary::Output::GroupsMultifastasNucleotide->new( group_names => [ 'group_2', 'group_5' ], gff_files => $gff_files, annotate_groups => $annotate_groups, dont_delete_files => 0, ), 'initialise creating multiple fastas where you delete non core files' ); ok( $obj->create_files(), 'Create multiple fasta files where you delete non core files' ); compare_ok('pan_genome_sequences/hly.fa', 't/data/pan_genome_sequences/hly.fa' , 'Check multifasta content is correct for 3-hly.fa '); ok(! -e 'pan_genome_sequences/speH.fa', 'Check 2-speH.fa doesnt exist since its non core'); ok(! -e 'pan_genome_sequences/argF.fa', 'Check 2-argF.fa doesnt exist since its non core'); cleanup_files(); # test group number limit ok( $obj = Bio::Roary::Output::GroupsMultifastasNucleotide->new( group_names => [ 'group_2', 'group_5' ], gff_files => $gff_files, annotate_groups => $annotate_groups, group_limit => 4 ), 'initialise creating multiple fastas' ); my $exp_stderr = "Number of clusters (8) exceeds limit (4). Multifastas not created. Please check the spreadsheet for contamination from different species or increase the --group_limit parameter.\n"; stderr_is { $obj->create_files() } $exp_stderr, 'multifasta creation fails when group limit exceeded'; cleanup_files(); done_testing(); sub cleanup_files { remove_tree('pan_genome_sequences'); unlink('reannotated_groups_file'); unlink('pan_genome_reference.fa'); }Roary-3.8.0/t/Bio/Roary/Output/NumberOfGroups.t000066400000000000000000000052561304207556500213070ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use Bio::Roary::AnnotateGroups; use Bio::Roary::AnalyseGroups; use Bio::Roary::GroupStatistics; use_ok('Bio::Roary::Output::NumberOfGroups'); } my $annotate_groups = Bio::Roary::AnnotateGroups->new( gff_files => ['t/data/query_1.gff','t/data/query_2.gff','t/data/query_3.gff'], groups_filename => 't/data/query_groups', ); my $analyse_groups = Bio::Roary::AnalyseGroups->new( fasta_files => ['t/data/query_1.fa','t/data/query_2.fa','t/data/query_3.fa'], groups_filename => 't/data/query_groups' ); my $group_statistics = Bio::Roary::GroupStatistics->new( annotate_groups_obj => $annotate_groups, analyse_groups_obj => $analyse_groups ); ok(my $obj = Bio::Roary::Output::NumberOfGroups->new( group_statistics_obj => $group_statistics, annotate_groups_obj => $annotate_groups ),'initialise object'); ok($obj->create_output_files, 'create the raw output file'); ok(-e 'number_of_conserved_genes.Rtab', 'check raw output file created'); compare_ok('t/data/expected_number_of_conserved_genes.tab', 'number_of_conserved_genes.Rtab', 'Content of total groups tab file as expected'); unlink('number_of_conserved_genes.Rtab'); ok(-e 'number_of_new_genes.Rtab', 'check raw output file created'); compare_ok('t/data/expected_number_of_new_genes.tab', 'number_of_new_genes.Rtab', ''); unlink('number_of_new_genes.Rtab'); ok(-e 'number_of_genes_in_pan_genome.Rtab', 'check raw output file created'); compare_ok('t/data/expected_number_of_genes_in_pan_genome.tab', 'number_of_genes_in_pan_genome.Rtab', 'Content of total groups tab file as expected'); unlink('number_of_genes_in_pan_genome.Rtab'); ok(-e 'number_of_unique_genes.Rtab', 'check raw output file created'); compare_ok('t/data/expected_number_of_unique_genes.tab', 'number_of_unique_genes.Rtab', 'Content of unique groups tab file as expected'); unlink('number_of_unique_genes.Rtab'); # Vary the core ok($obj = Bio::Roary::Output::NumberOfGroups->new( group_statistics_obj => $group_statistics, annotate_groups_obj => $annotate_groups, core_definition => 0.6 ),"initialise object with 60 percent core definition"); ok($obj->create_output_files, 'create the raw output files for 60 percent core def'); compare_ok('t/data/expected_number_of_conserved_genes_0.6.tab','number_of_conserved_genes.Rtab', 'Content of conserved genes with 60 percent core def'); unlink('number_of_conserved_genes.Rtab'); unlink('number_of_new_genes.Rtab'); unlink('number_of_genes_in_pan_genome.Rtab'); unlink('number_of_unique_genes.Rtab'); unlink('group_statitics.csv'); done_testing(); Roary-3.8.0/t/Bio/Roary/Output/QueryGroups.t000077500000000000000000000054231304207556500206760ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Moose; BEGIN { unshift( @INC, './t/lib' ) } with 'TestHelper'; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::Output::QueryGroups'); } my $plot_groups_obj = Bio::Roary::AnalyseGroups->new( fasta_files => [ 't/data/query_1.fa', 't/data/query_2.fa','t/data/query_3.fa' ], groups_filename => 't/data/query_groups' ); my $obj; ok($obj = Bio::Roary::Output::QueryGroups->new( analyse_groups => $plot_groups_obj, input_filenames => [ 't/data/query_1.fa', 't/data/query_2.fa','t/data/query_3.fa' ] ),'initialise groups query object'); ok($obj->groups_union(), 'create the union file'); ok($obj->groups_intersection(), 'create the intersection file'); ok($obj->groups_complement(), 'create the complement file'); compare_files('union_of_groups.gg','t/data/expected_union_of_groups.gg', 'contents of the union groups as expected'); compare_files('intersection_of_groups.gg', 't/data/expected_intersection_of_groups.gg', 'contents of the intersection groups as expected'); compare_files('complement_of_groups.gg', 't/data/expected_complement_of_groups.gg', 'contents of the complement groups as expected'); ###################################### # test varying core definition ok($obj = Bio::Roary::Output::QueryGroups->new( analyse_groups => $plot_groups_obj, input_filenames => [ 't/data/query_1.fa', 't/data/query_2.fa','t/data/query_3.fa' ], core_definition => 0.66 ),'initialise groups query object'); ok($obj->groups_intersection(), 'create the intersection file'); ok($obj->groups_complement(), 'create the complement file'); compare_files('intersection_of_groups.gg', 't/data/expected_intersection_of_groups_core0.66.gg', 'contents of the intersection groups as expected'); compare_files('complement_of_groups.gg', 't/data/expected_complement_of_groups_core0.66.gg', 'contents of the complement groups as expected'); unlink('union_of_groups.gg'); unlink('intersection_of_groups.gg'); unlink('complement_of_groups.gg'); ###################################### $plot_groups_obj = Bio::Roary::AnalyseGroups->new( fasta_files => [ 't/data/query_1.fa', 't/data/query_2.fa','t/data/query_3.fa' ], groups_filename => 't/data/query_groups_paralogs' ); ok($obj = Bio::Roary::Output::QueryGroups->new( analyse_groups => $plot_groups_obj, input_filenames => [ 't/data/query_1.fa', 't/data/query_2.fa','t/data/query_3.fa' ] ),'initialise groups query object with paralogs'); ok($obj->groups_intersection(), 'create the intersection file'); compare_files('intersection_of_groups.gg', 't/data/expected_intersection_of_groups_paralogs.gg', 'contents of the intersection groups with paralogs as expected'); unlink('intersection_of_groups.gg'); done_testing(); Roary-3.8.0/t/Bio/Roary/ParallelAllAgainstAllBlast.t000066400000000000000000000013601304207556500221750ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Cwd; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::ParallelAllAgainstAllBlast'); } my $obj; my $cwd = getcwd(); ok($obj = Bio::Roary::ParallelAllAgainstAllBlast->new( fasta_file => 't/data/example_1.faa', blastp_exec => $cwd.'/t/bin/dummy_blastp', makeblastdb_exec => $cwd.'/t/bin/dummy_makeblastdb', ),'initialise obj with mocked external applications'); ok($obj->run(),'Run locally'); ok(-e $obj->_working_directory_name.'/blast_results', 'Combined blast results'); unlink('output_contigs.phr'); unlink('output_contigs.pin'); unlink('output_contigs.psq'); unlink('results.out'); done_testing(); Roary-3.8.0/t/Bio/Roary/PrepareInputFiles.t000066400000000000000000000031401304207556500204610ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use File::Basename; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::PrepareInputFiles'); } my $obj; ok( $obj = Bio::Roary::PrepareInputFiles->new( input_files => [ 't/data/example_annotation.gff', 't/data/example_1.faa', 't/data/example_annotation_2.gff', 't/data/example_2.faa','t/data/sequences_with_unknowns.faa' ], ), 'initalise' ); my @sorted_fasta_files = sort map { basename($_) } sort @{$obj->fasta_files}; my @expected_fasta_files = sort(( 'example_1.faa.tmp.filtered.fa', 'example_2.faa.tmp.filtered.fa', 'example_annotation.gff.proteome.faa', 'example_annotation_2.gff.proteome.faa', 'sequences_with_unknowns.faa.tmp.filtered.fa' )); is_deeply( \@sorted_fasta_files, \@expected_fasta_files, 'proteome extracted from gff files, input fasta files filtered' ); my @input_files_lookup = sort map { basename($_) } @{$obj->lookup_fasta_files_from_unknown_input_files( [ 't/data/example_annotation_2.gff', 't/data/example_1.faa' ] )}; is_deeply( \@input_files_lookup, ['example_1.faa.tmp.filtered.fa','example_annotation_2.gff.proteome.faa'], 'previously created faa file looked up from gff filename' ); unlink('example_annotation.gff.proteome.faa'); unlink('example_annotation_2.gff.proteome.faa'); unlink('sequences_with_unknowns.faa.tmp.filtered.fa'); unlink('example_1.faa.tmp.filtered.fa'); unlink('example_2.faa.tmp.filtered.fa'); done_testing(); Roary-3.8.0/t/Bio/Roary/PresenceAbsenceMatrix.t000066400000000000000000000057331304207556500213040ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::PresenceAbsenceMatrix'); use Bio::Roary::AnnotateGroups; } my $obj; my $annotate_groups = Bio::Roary::AnnotateGroups->new( gff_files => [ 't/data/query_1.gff', 't/data/query_2.gff', 't/data/query_3.gff' ], groups_filename => 't/data/query_groups', ); my $sorted_file_names = [ 't/data/query_1.fa', 't/data/query_2.fa', 't/data/query_3.fa' ]; my $groups_to_files = { 'group_3' => { 't/data/query_1.fa' => [ '1_3' ], 't/data/query_3.fa' => [ '3_3' ] }, 'group_5' => { 't/data/query_3.fa' => [ '3_5' ] }, 'group_7' => { 't/data/query_2.fa' => [ '2_7' ] }, 'group_4' => { 't/data/query_3.fa' => [ '3_4' ], 't/data/query_2.fa' => [ '2_4' ] }, 'group_1' => { 't/data/query_1.fa' => [ '1_1' ], 't/data/query_3.fa' => [ '3_1' ], 't/data/query_2.fa' => [ '2_1' ] }, 'group_6' => { 't/data/query_1.fa' => [ '1_6' ] }, 'group_2' => { 't/data/query_1.fa' => [ '1_2' ], 't/data/query_2.fa' => [ '2_2' ] } }; my $num_files_in_groups = { 'group_3' => 2, 'group_5' => 1, 'group_7' => 1, 'group_4' => 2, 'group_1' => 3, 'group_6' => 1, 'group_2' => 2 }; my $sample_headers = [ 'query_1.fa', 'query_2.fa', 'query_3.fa' ]; ok( $obj = Bio::Roary::PresenceAbsenceMatrix->new( annotate_groups_obj => $annotate_groups, output_filename => 'test_gene_presence_absence.Rtab', sorted_file_names => $sorted_file_names, groups_to_files => $groups_to_files, num_files_in_groups => $num_files_in_groups, sample_headers => $sample_headers, ), 'initialise object' ); ok( $obj->create_matrix_file, 'create matrix file' ); ok( -e 'test_gene_presence_absence.Rtab', 'matrix file exists' ); compare_ok( 'test_gene_presence_absence.Rtab', 't/data/expected_gene_presence_and_absence.Rtab', 'Rtab matrix content as expected' ); # one gene one group $groups_to_files = {'group_1' => {'t/data/query_1.fa' => [ '1_1' ]}}; $num_files_in_groups = {'group_1' => 1}; ok( $obj = Bio::Roary::PresenceAbsenceMatrix->new( annotate_groups_obj => $annotate_groups, output_filename => 'test_gene_presence_absence.Rtab', sorted_file_names => $sorted_file_names, groups_to_files => $groups_to_files, num_files_in_groups => $num_files_in_groups, sample_headers => $sample_headers, ), 'initialise object one gene one group' ); ok( $obj->create_matrix_file, 'create matrix file one gene one group' ); compare_ok( 'test_gene_presence_absence.Rtab', 't/data/expected_one_gene_presence_and_absence.Rtab', 'Rtab matrix content as expected for one gene one group' ); unlink('test_gene_presence_absence.Rtab'); done_testing(); Roary-3.8.0/t/Bio/Roary/QC/000077500000000000000000000000001304207556500152005ustar00rootroot00000000000000Roary-3.8.0/t/Bio/Roary/QC/Report.t000077500000000000000000000066751304207556500166610ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; use File::Which; BEGIN { unshift( @INC, './lib' ) } BEGIN { use Test::Most; use_ok('Bio::Roary::QC::Report'); } my $kraken_data = [ [ 'assembly1', 'Clostridium', 'Clostridium difficile' ], [ 'assembly2', 'Escherichia', 'Escherichia coli' ], [ 'assembly3', 'Streptococcus', 'Streptococcus pneumoniae' ] ]; ok( my $qc_report_obj = Bio::Roary::QC::Report->new( input_files => [], outfile => "kraken_report.csv", _kraken_data => $kraken_data, kraken_db => 't/data/kraken_test/', job_runner => "Local" ), 'QC report object created with no input gff files' ); ok( $qc_report_obj->report, 'report generated' ); ok( -e 'kraken_report.csv', 'report file exists' ); compare_ok('kraken_report.csv',"t/data/exp_qc_report.csv", 'report file correct' ); unlink('kraken_report.csv'); ok( $qc_report_obj = Bio::Roary::QC::Report->new( input_files => [ 't/data/query_1.gff', 't/data/query_2.gff' ], outfile => "kraken_report.csv", job_runner => "Local", kraken_db => 't/data/kraken_test/', verbose => 0, ), 'QC report object created with data' ); is( $qc_report_obj->_tmp_directory . '/abc.fna', $qc_report_obj->_nuc_fasta_filename('abc.gff'), 'filename of nuc from gff' ); is( 'sed -n \'/##FASTA/,//p\' abc.gff | grep -v \'##FASTA\' > ' . $qc_report_obj->_tmp_directory . '/abc.fna', $qc_report_obj->_extract_nuc_fasta_cmd('abc.gff'), 'extract nuc command' ); ok( my $nuc_files = $qc_report_obj->_extract_nuc_files_from_all_gffs(), 'extract nuc files from gffs' ); is_deeply( [ $qc_report_obj->_tmp_directory . '/query_1.fna', $qc_report_obj->_tmp_directory . '/query_2.fna' ], $nuc_files, 'check extracted nuc files from gffs list' ); compare_ok( $qc_report_obj->_tmp_directory . '/query_1.fna' , 't/data/expected_query_1.fna', 'Check FASTA file 1 extracted as expected' ); compare_ok( $qc_report_obj->_tmp_directory . '/query_2.fna' , 't/data/expected_query_2.fna', 'Check FASTA file 2 extracted as expected' ); SKIP: { skip "kraken not installed", 2 unless ( which('kraken') ); skip "kraken-report not installed", 2 unless ( which('kraken-report') ); ok( my $kraken_files = $qc_report_obj->_run_kraken_on_nuc_files($nuc_files), 'run kraken over everything' ); is_deeply( [ $qc_report_obj->_tmp_directory . '/query_1.kraken', $qc_report_obj->_tmp_directory . '/query_2.kraken' ], $kraken_files, 'check kraken files are created from nuc files' ); ok(my $kraken_report_files = $qc_report_obj->_run_kraken_report_on_kraken_files( $kraken_files ), 'build reports'); is_deeply( [ $qc_report_obj->_tmp_directory . '/query_1.kraken.report', $qc_report_obj->_tmp_directory . '/query_2.kraken.report' ], $kraken_report_files, 'check kraken report files are created from kraken files' ); is_deeply([['query_1','Staphylococcus', 'Staphylococcus aureus'],['query_2','Staphylococcus', 'Staphylococcus aureus']],$qc_report_obj->_parse_kraken_reports($kraken_report_files),'check output report'); ok( $qc_report_obj->report, 'report generated with real data' ); ok( -e 'kraken_report.csv', 'report file exists with real data' ); compare_ok('kraken_report.csv',"t/data/exp_qc_report_real.csv", 'report file correct' ); unlink('kraken_report.csv'); } done_testing(); Roary-3.8.0/t/Bio/Roary/ReformatInputGFFs.t000077500000000000000000000071131304207556500203740ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use File::Path qw(remove_tree); use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::ReformatInputGFFs'); } my $obj; remove_tree('fixed_input_files'); ok($obj = Bio::Roary::ReformatInputGFFs->new(gff_files => ['t/data/reformat_input_gffs/query_1.gff']), 'initialise with one input gff'); ok($obj->fix_duplicate_gene_ids, 'fix duplicates with one input gff'); is_deeply($obj->fixed_gff_files, ['t/data/reformat_input_gffs/query_1.gff'] ,'list of gff files with one input gff, nothing should change'); ok(!( -d 'fixed_input_files'), 'Directory shouldnt exist because there arent any fixed input files'); ok($obj = Bio::Roary::ReformatInputGFFs->new(gff_files => ['t/data/reformat_input_gffs/query_1.gff', 't/data/reformat_input_gffs/query_2.gff',]), 'initialise with 2 input gffs'); ok(!( -d 'fixed_input_files'), 'Directory shouldnt exist before running'); is_deeply($obj->_get_ids_for_gff_file('t/data/reformat_input_gffs/query_1.gff'),[ '1_1', 'abc_00002', 'abc_00003', 'abc_00004', '1_2' ],'extract ids'); is_deeply($obj->_get_ids_for_gff_file('t/data/reformat_input_gffs/query_2.gff'),[ '1_1', 'abc_00002', 'abc_00003', 'abc_00004', '1_2' ],'extract ids'); ok($obj->fix_duplicate_gene_ids, 'fix duplicates with 2 input gffs'); ok(( -d 'fixed_input_files'), 'Directory should exist because there is one gff thats fixed'); is_deeply($obj->fixed_gff_files, ['t/data/reformat_input_gffs/query_1.gff','fixed_input_files/query_2.gff' ] ,'list of gff files one in the fixed directory'); ok(( -e 'fixed_input_files/query_2.gff'), 'fixed file should exist'); compare_ok('fixed_input_files/query_2.gff', 't/data/reformat_input_gffs/expected_fixed_query_2.gff', 'fixed file should have expected changes'); remove_tree('fixed_input_files'); ok($obj = Bio::Roary::ReformatInputGFFs->new(gff_files => ['t/data/reformat_input_gffs/query_1.gff', 't/data/reformat_input_gffs/query_2.gff', 't/data/reformat_input_gffs/query_3.gff']), 'initialise with 3 input gffs'); ok(!( -d 'fixed_input_files'), 'Directory shouldnt exist before running'); ok($obj->fix_duplicate_gene_ids, 'fix duplicates with 3 input gffs'); ok(( -d 'fixed_input_files'), 'Directory should exist because there is 2 gffs thats fixed'); is_deeply($obj->fixed_gff_files, ['t/data/reformat_input_gffs/query_1.gff','fixed_input_files/query_2.gff','fixed_input_files/query_3.gff' ] ,'list of gff files 2 in the fixed directory'); ok(( -e 'fixed_input_files/query_2.gff'), 'fixed file should exist'); ok(( -e 'fixed_input_files/query_3.gff'), 'fixed file should exist'); compare_ok('fixed_input_files/query_2.gff','t/data/reformat_input_gffs/expected_fixed_query_2.gff', 'fixed file should have expected changes'); compare_ok('fixed_input_files/query_3.gff', 't/data/reformat_input_gffs/expected_fixed_query_3.gff', 'fixed file should have expected changes'); remove_tree('fixed_input_files'); ok($obj = Bio::Roary::ReformatInputGFFs->new(gff_files => ['t/data/reformat_input_gffs/real_1.gff']), 'initialise with 1 gff that has shown to have a bug'); ok(my $fixed_file = $obj->_add_suffix_to_gene_ids_and_return_new_file('t/data/reformat_input_gffs/real_1.gff'), 'fix duplicates'); ok(( -e 'fixed_input_files/real_1.gff'), 'fixed file should exist'); compare_ok('fixed_input_files/real_1.gff', 't/data/reformat_input_gffs/expected_real_1.gff', 'fixed file should have expected changes'); remove_tree('fixed_input_files'); done_testing(); Roary-3.8.0/t/Bio/Roary/ReorderSpreadsheet.t000066400000000000000000000017741304207556500206650ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::ReorderSpreadsheet'); } ok( my $obj = Bio::Roary::ReorderSpreadsheet->new( tree_file => 't/data/reorder_isolates.tre', spreadsheet => 't/data/reorder_isolates_input.csv', output_filename => 'reorder_isolates_output.csv', sortby => 'height' ), 'initialise reordering the spreadsheet' ); is_deeply($obj->_column_mappings,[0,1,2,3,4,5,6,7,8,9,10,11,12,13],'Column mappings with fixed in same order and end columns ordered by tree file'); ok( $obj->reorder_spreadsheet(), 'run the reorder method' ); ok( -e $obj->output_filename, 'check the output file exists' ); compare_ok('t/data/reorder_isolates_expected_output.csv', 'reorder_isolates_output.csv', 'content of the spreadsheet as expected' ); unlink('reorder_isolates_output.csv'); done_testing(); Roary-3.8.0/t/Bio/Roary/SampleOrder.t000066400000000000000000000073521304207556500173060ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::SampleOrder'); } ok(my $obj = Bio::Roary::SampleOrder->new( tree_file => 't/data/reorder_isolates.tre', ), 'initialise sample order object'); is_deeply($obj->ordered_samples(),['query_1', 'query_3','query_4','query_2'],'order of sample names matches the tree'); ok( $obj = Bio::Roary::SampleOrder->new( tree_file => 't/data/raxml.tre', ), 'initialise sample order object with raxml tree'); is_deeply($obj->ordered_samples(),[ 'efgh_7#3', 'abcd_4#15', 'abcd_3#9', 'abcd_4#17', 'abcd_3#20', 'abcd_3#96', 'abcd_3#7', '6753_5#30', 'abcd_3#8', 'abcd_3#12', 'abcd_4#13', 'abcd_3#4', 'abcd_3#47', 'abcd_4#36', 'abcd_3#90', 'abcd_3#45', 'abcd_3#51', 'abcd_3#76', 'abcd_4#22', 'abcd_3#94', 'abcd_3#72', 'abcd_3#18', 'abcd_3#82', 'abcd_3#88', 'abcd_3#87', 'abcd_3#58', 'abcd_3#85', 'abcd_4#24', 'abcd_3#86', 'abcd_4#38', 'abcd_3#70', 'abcd_3#89', 'abcd_3#19', 'abcd_3#84', 'abcd_3#60', 'abcd_4#21', 'abcd_3#35', 'abcd_3#32', 'abcd_4#20', 'abcd_3#11', 'abcd_4#28', 'abcd_4#27', 'abcd_3#54', 'abcd_3#53', 'abcd_3#43', 'abcd_3#50', 'abcd_4#12', 'abcd_3#15', 'abcd_3#21', 'abcd_3#91', 'abcd_3#73', 'abcd_3#61', 'abcd_4#35', 'abcd_3#17', 'abcd_3#67', 'abcd_3#27', 'abcd_3#13', 'abcd_3#24', 'abcd_3#95', 'abcd_3#23', 'abcd_3#29', 'abcd_3#75', 'abcd_3#25', 'abcd_4#16', 'abcd_4#30', 'abcd_4#26', 'abcd_3#36', 'abcd_4#25', 'abcd_3#64', 'abcd_3#44', 'abcd_3#68', 'abcd_3#69', 'efgh_7#12', 'abcd_3#55', 'abcd_4#1', 'abcd_3#56', 'abcd_3#14', 'abcd_4#7', 'abcd_4#8', 'abcd_3#26', 'abcd_4#9', 'abcd_4#40', 'abcd_4#10', 'abcd_4#6', 'abcd_4#5', 'abcd_3#3', 'abcd_3#33', 'abcd_3#28', 'abcd_3#6', 'abcd_3#16', 'abcd_3#79', 'abcd_3#77', 'abcd_4#41', 'abcd_4#34', 'abcd_3#5', 'abcd_3#74', 'abcd_3#34', 'abcd_3#2', 'abcd_3#22', 'abcd_4#32', 'abcd_3#92', 'abcd_4#19', 'abcd_4#23', 'abcd_4#18', 'abcd_3#37', 'abcd_3#59', 'abcd_3#30', 'abcd_3#1', 'abcd_4#42', 'abcd_3#10', 'abcd_4#37', 'abcd_3#81', 'abcd_3#80', 'abcd_3#83', 'abcd_4#33', 'abcd_4#31', 'abcd_3#71', 'abcd_3#78', 'abcd_4#39', 'abcd_3#41', 'abcd_4#29', 'abcd_4#14', 'abcd_3#31', 'abcd_3#93', 'abcd_3#62', 'abcd_3#48', 'abcd_3#42', 'abcd_3#52', 'abcd_3#57', 'abcd_3#49', 'abcd_4#3', 'abcd_4#2', 'abcd_3#39', 'abcd_3#38', 'abcd_4#11', '5749_2#1' ],'order of sample names matches the raxml tree'); done_testing(); Roary-3.8.0/t/Bio/Roary/SequenceLengths.t000066400000000000000000000011741304207556500201620ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::SequenceLengths'); } ok( my $obj = Bio::Roary::SequenceLengths->new( fasta_file => 't/data/example_1.faa', ), 'Initialise object' ); is_deeply( $obj->sequence_lengths, { '1234#10_00006' => 211, '1234#10_00003' => 113, '1234#10_00001' => 145, '1234#10_00005' => 207, '1234#10_00002' => 246, '1234#10_00007' => 242 }, 'hash with lengths of each sequence' ); done_testing(); Roary-3.8.0/t/Bio/Roary/SortFasta.t000077500000000000000000000037341304207556500170020ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::SortFasta'); } my $obj; ok( $obj = Bio::Roary::SortFasta->new( input_filename => 't/data/out_of_order_fasta.fa', ), 'initalise object'); ok($obj->sort_fasta, 'sort the fasta file'); ok(-e 't/data/out_of_order_fasta.fa.sorted.fa', 'the new file exists'); compare_ok('t/data/out_of_order_fasta.fa.sorted.fa', 't/data/expected_out_of_order_fasta.fa.sorted.fa', 'check order of sorted fasta'); ok( $obj = Bio::Roary::SortFasta->new( input_filename => 't/data/uneven_sequences.fa', make_multiple_of_three => 1, ), 'initalise object with uneven sequences'); ok($obj->sort_fasta, 'sort the fasta file'); compare_ok($obj->output_filename, 't/data/expected_uneven_sequences.fa', "output sequences are now divisible by three"); ok( $obj = Bio::Roary::SortFasta->new( input_filename => 't/data/nnn_at_end.fa', remove_nnn_from_end => 1, ), 'initalise object with alignment with nnn at end '); ok($obj->sort_fasta, 'sort the fasta file and remove nnn at end'); compare_ok($obj->output_filename, 't/data/expected_nnn_at_end.fa', "output sequences are now divisible by three"); ok( $obj = Bio::Roary::SortFasta->new( input_filename => 't/data/uneven_sequences.fa', make_multiple_of_three => 1, remove_nnn_from_end => 1, ), 'initalise object with uneven sequences and remove nnn from end but nothing to remove'); ok($obj->sort_fasta, 'sort the fasta file'); compare_ok($obj->output_filename, 't/data/expected_uneven_sequences.fa', "output sequences are now divisible by three and no nnn removed"); is(0,$obj->_percentage_similarity("AAA","BBB"), 'totally different'); is(1,$obj->_percentage_similarity("AAA","AAA"), 'all the same'); is(0.5,$obj->_percentage_similarity("AAAA","AABB"), 'half different'); is(1,$obj->_percentage_similarity("AAAA","AAAABB"), 'first half the same'); done_testing(); Roary-3.8.0/t/Bio/Roary/SplitGroups.t000066400000000000000000000043551304207556500173640ustar00rootroot00000000000000#!/usr/bin/env perl use strict; use warnings; use Data::Dumper; use Test::Files; BEGIN { unshift( @INC, './lib' ) } $ENV{PATH} .= ":./bin"; BEGIN { use Test::Most; use_ok('Bio::Roary::SplitGroups'); } my $obj; # test 1 - 100% shared CGN ok( $obj = Bio::Roary::SplitGroups->new( groupfile => 't/data/split_groups/paralog_clusters1', fasta_files => [ 't/data/split_groups/paralogs1.fa', 't/data/split_groups/paralogs2.fa' ], outfile => 'blah.out', _do_sorting => 1 ), 'initalise object'); $obj->split_groups; ok( -e 'blah.out', 'output file exists' ); compare_ok('blah.out','t/data/split_groups/paralog_exp_clusters1', 'split group output correct for test 1'); # test 2 - partial sharing of CGN ok( $obj = Bio::Roary::SplitGroups->new( groupfile => 't/data/split_groups/paralog_clusters2', fasta_files => [ 't/data/split_groups/paralogs1.fa', 't/data/split_groups/paralogs2.fa' ], outfile => 'blah2.out', _do_sorting => 1 ), 'initalise object'); $obj->split_groups; ok( -e 'blah2.out', 'output file exists' ); compare_ok('blah2.out', 't/data/split_groups/paralog_exp_clusters2', 'split group output correct for test 2'); # test 3 - one gene with no shared CGN ok( $obj = Bio::Roary::SplitGroups->new( groupfile => 't/data/split_groups/paralog_clusters3', fasta_files => [ 't/data/split_groups/paralogs1.fa', 't/data/split_groups/paralogs2.fa' ], outfile => 'blah3.out', _do_sorting => 1 ), 'initalise object'); $obj->split_groups; ok( -e 'blah3.out', 'output file exists' ); compare_ok('blah3.out', 't/data/split_groups/paralog_exp_clusters3', 'split group output correct for test 3'); # test 4 - paralogs inside paralogs (inception paralog) ok( $obj = Bio::Roary::SplitGroups->new( groupfile => 't/data/split_groups/paralog_clusters4', fasta_files => [ 't/data/split_groups/paralogs1.fa', 't/data/split_groups/paralogs2.fa', 't/data/split_groups/paralogs3.fa' ], outfile => 'blah4.out', _do_sorting => 1 ), 'initalise object'); $obj->split_groups; ok( -e 'blah4.out', 'output file exists' ); compare_ok('blah4.out','t/data/split_groups/paralog_exp_clusters4', 'split group output correct for test 4'); unlink( "blah.out" ); unlink( "blah2.out" ); unlink( "blah3.out" ); unlink( "blah4.out" ); done_testing(); Roary-3.8.0/t/bin/000077500000000000000000000000001304207556500136405ustar00rootroot00000000000000Roary-3.8.0/t/bin/dummy_blastp000077500000000000000000000006051304207556500162670ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Getopt::Long; my ($output_filename,$query,$db,$evalue,$num_threads,$outfmt,$max_target_seqs) ; GetOptions( 'query=s' => \$query, 'db=s' => \$db, 'evalue=s' => \$evalue, 'num_threads=s' => \$num_threads, 'outfmt=s' => \$outfmt, 'max_target_seqs=s' => \$max_target_seqs, ); system("touch _blast_results"); 1;Roary-3.8.0/t/bin/dummy_cd-hit000077500000000000000000000001561304207556500161530ustar00rootroot00000000000000#!/usr/bin/env perl system("touch output"); system("touch output.clstr"); system("touch output.bak.clstr"); 1;Roary-3.8.0/t/bin/dummy_makeblastdb000077500000000000000000000006241304207556500172540ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Getopt::Long; my($output_filename,$dbtype,$in,$logfile,$parse_seqids,$mask_data); GetOptions( 'o|out=s' => \$output_filename, 'd|dbtype=s' => \$dbtype, 'l|logfile=s' => \$logfile, 'i|in=s' => \$in, 'mask_data=s' => \$mask_data, ); system("touch $output_filename.phr"); system("touch $output_filename.pin"); system("touch $output_filename.psq"); 1;Roary-3.8.0/t/bin/dummy_mcl000077500000000000000000000004021304207556500155500ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Getopt::Long; my ($output_filename,$abc_format,$inflation); GetOptions( 'o|output=s' => \$output_filename, 'i|inflation=s' => \$inflation, 'a|abc' => \$abc_format ); system("touch $output_filename"); 1;Roary-3.8.0/t/bin/dummy_mcxdeblast000077500000000000000000000000261304207556500171250ustar00rootroot00000000000000#!/usr/bin/env perl 1;Roary-3.8.0/t/bin/dummy_segmasker000077500000000000000000000005371304207556500167670ustar00rootroot00000000000000#!/usr/bin/env perl use Moose; use Getopt::Long; my($output_filename,$dbtype,$in,$logfile,$parse_seqids,$mask_data,$infmt,$outfmt); GetOptions( 'o|out=s' => \$output_filename, 'i|in=s' => \$in, 'infmt=s' => \$infmt, 'outfmt=s' => \$outfmt, 'mask_data=s' => \$mask_data, ); system("touch $output_filename"); 1;Roary-3.8.0/t/data/000077500000000000000000000000001304207556500140015ustar00rootroot00000000000000Roary-3.8.0/t/data/accessory_graphs/000077500000000000000000000000001304207556500173405ustar00rootroot00000000000000Roary-3.8.0/t/data/accessory_graphs/core_deletion000066400000000000000000000002411304207556500220730ustar00rootroot00000000000000group_A: 1_AA 2_AA 3_AA group_B: 1_BB 2_BB 3_BB group_C: 1_CC 2_CC 3_CC group_D: 1_DD group_E: 1_EE group_F: 1_FF group_G: 1_GG 2_GG 3_GG group_H: 1_HH 2_HH 3_HHRoary-3.8.0/t/data/accessory_graphs/core_island000066400000000000000000000004471304207556500215520ustar00rootroot00000000000000group_A: 1_core_island_A group_B: 1_core_island_B group_C: 1_core_island_C group_D: 1_core_island_D 2_core_island_D 3_core_island_D group_E: 1_core_island_E 2_core_island_E 3_core_island_E group_F: 1_core_island_F 2_core_island_F 3_core_island_F group_G: 1_core_island_G group_H: 1_core_island_HRoary-3.8.0/t/data/accessory_graphs/file_1.fa000066400000000000000000000005771304207556500210200ustar00rootroot00000000000000>1_A AAAA >1_B BBBB >1_C CCCC >1_E AAAA >1_F BBBB >1_F_insertion BBBB >1_G CCCC >1_H AAAA >1_I BBBB >1_J CCCC >1_Z DDDD >1_AA AAAA >1_BB AAAA >1_CC AAAA >1_DD AAAA >1_EE AAAA >1_FF AAAA >1_GG AAAA >1_HH AAAA >1_core_island_A AAAA >1_core_island_B AAAA >1_core_island_C AAAA >1_core_island_D AAAA >1_core_island_E AAAA >1_core_island_F AAAA >1_core_island_G AAAA >1_core_island_H AAAARoary-3.8.0/t/data/accessory_graphs/file_1.gff000066400000000000000000000025651304207556500211730ustar00rootroot00000000000000##gff-version 3 ##sequence-region contig01 1 1500 contig01 abc CDS 1 90 . - 0 ID=1_A contig01 abc CDS 100 190 . + 0 ID=1_B contig01 abc CDS 200 290 . + 0 ID=1_C contig01 abc CDS 300 390 . - 0 ID=1_E contig01 abc CDS 400 490 . + 0 ID=1_F contig01 abc CDS 500 590 . + 0 ID=1_F_insertion contig01 abc CDS 600 690 . + 0 ID=1_G contig01 abc CDS 700 790 . + 0 ID=1_H contig02 abc CDS 800 890 . + 0 ID=1_Z contig03 abc CDS 1 90 . - 0 ID=1_AA contig03 abc CDS 100 190 . + 0 ID=1_BB contig03 abc CDS 200 290 . + 0 ID=1_CC contig03 abc CDS 300 390 . - 0 ID=1_DD contig03 abc CDS 400 490 . + 0 ID=1_EE contig03 abc CDS 500 590 . + 0 ID=1_FF contig03 abc CDS 600 690 . + 0 ID=1_GG contig03 abc CDS 700 790 . + 0 ID=1_HH contig04 abc CDS 1 90 . - 0 ID=1_core_island_A contig04 abc CDS 100 190 . + 0 ID=1_core_island_B contig04 abc CDS 200 290 . + 0 ID=1_core_island_C contig04 abc CDS 300 390 . - 0 ID=1_core_island_D contig04 abc CDS 400 490 . + 0 ID=1_core_island_E contig04 abc CDS 500 590 . + 0 ID=1_core_island_F contig04 abc CDS 600 690 . + 0 ID=1_core_island_G contig04 abc CDS 700 790 . + 0 ID=1_core_island_H ##FASTA >contig01 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT >contig02 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT >contig03 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT >contig04 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT Roary-3.8.0/t/data/accessory_graphs/file_2.fa000066400000000000000000000003341304207556500210100ustar00rootroot00000000000000>2_A AAAA >2_B BBBB >2_C CCCC >2_E AAAA >2_F BBBB >2_G CCCC >2_H AAAA >2_I BBBB >2_J CCCC >2_Z DDDD >2_AA AAAA >2_BB AAAA >2_CC AAAA >2_GG AAAA >2_HH AAAA >2_core_island_D AAAA >2_core_island_E AAAA >2_core_island_F AAAARoary-3.8.0/t/data/accessory_graphs/file_2.gff000066400000000000000000000017311304207556500211660ustar00rootroot00000000000000##gff-version 3 ##sequence-region contig01 1 1500 contig01 abc CDS 1 90 . - 0 ID=2_A contig01 abc CDS 100 190 . + 0 ID=2_B contig01 abc CDS 200 290 . + 0 ID=2_C contig01 abc CDS 300 390 . - 0 ID=2_E contig01 abc CDS 400 490 . + 0 ID=2_F contig01 abc CDS 600 690 . + 0 ID=2_G contig01 abc CDS 700 790 . + 0 ID=2_H contig02 abc CDS 800 890 . + 0 ID=2_Z contig03 abc CDS 1 90 . - 0 ID=2_AA contig03 abc CDS 100 190 . + 0 ID=2_BB contig03 abc CDS 200 290 . + 0 ID=2_CC contig03 abc CDS 600 690 . + 0 ID=2_GG contig03 abc CDS 700 790 . + 0 ID=2_HH contig04 abc CDS 300 390 . - 0 ID=2_core_island_D contig04 abc CDS 400 490 . + 0 ID=2_core_island_E contig04 abc CDS 500 590 . + 0 ID=2_core_island_F ##FASTA >contig01 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT >contig02 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT >contig03 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT >contig04 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT Roary-3.8.0/t/data/accessory_graphs/file_3.fa000066400000000000000000000003341304207556500210110ustar00rootroot00000000000000>3_A AAAA >3_B BBBB >3_C CCCC >3_E AAAA >3_F BBBB >3_G CCCC >3_H AAAA >3_I BBBB >3_J CCCC >3_Z DDDD >3_AA AAAA >3_BB AAAA >3_CC AAAA >3_GG AAAA >3_HH AAAA >3_core_island_D AAAA >3_core_island_E AAAA >3_core_island_F AAAARoary-3.8.0/t/data/accessory_graphs/file_3.gff000066400000000000000000000017301304207556500211660ustar00rootroot00000000000000##gff-version 3 ##sequence-region contig01 1 1500 contig01 abc CDS 1 99 . - 0 ID=3_A contig01 abc CDS 100 199 . + 0 ID=3_B contig01 abc CDS 200 299 . + 0 ID=3_C contig01 abc CDS 300 390 . - 0 ID=3_E contig01 abc CDS 400 490 . + 0 ID=3_F contig01 abc CDS 600 690 . + 0 ID=3_G contig01 abc CDS 700 790 . + 0 ID=3_H contig02 abc CDS 800 890 . + 0 ID=3_Z contig03 abc CDS 1 90 . - 0 ID=3_AA contig03 abc CDS 100 190 . + 0 ID=3_BB contig03 abc CDS 200 290 . + 0 ID=3_CC contig03 abc CDS 600 690 . + 0 ID=3_GG contig03 abc CDS 700 790 . + 0 ID=3_HH contig04 abc CDS 300 390 . - 0 ID=3_core_island_D contig04 abc CDS 400 490 . + 0 ID=3_core_island_E contig04 abc CDS 500 590 . + 0 ID=3_core_island_F ##FASTA >contig01 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT >contig02 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT >contig03 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT >contig04 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTATRoary-3.8.0/t/data/accessory_graphs/no_accessory000066400000000000000000000000761304207556500217550ustar00rootroot00000000000000group_A: 1_A 2_A 3_A group_B: 1_B 2_B 3_B group_C: 1_C 2_C 3_CRoary-3.8.0/t/data/accessory_graphs/one_branch000066400000000000000000000001361304207556500213610ustar00rootroot00000000000000group_A: 1_A 2_A 3_A group_B1: 1_B group_B2: 2_B 3_B group_C: 1_C 2_C 3_C group_E: 1_E 2_E 3_ERoary-3.8.0/t/data/accessory_graphs/one_bubble000066400000000000000000000002011304207556500213500ustar00rootroot00000000000000group_C: 1_C 2_C 3_C group_E: 1_E 2_E 3_E group_bubble_1: 1_F group_bubble_2: 1_F_insertion group_F: 2_F 3_F group_G: 1_G 2_G 3_GRoary-3.8.0/t/data/accessory_graphs/single_gene_contig000066400000000000000000000000251304207556500231020ustar00rootroot00000000000000group_A: 1_Z 2_Z 3_Z Roary-3.8.0/t/data/accessory_graphs/two_graphs000066400000000000000000000001231304207556500214340ustar00rootroot00000000000000group_A: 1_A 2_A 3_A group_B: 1_B 2_B 3_B group_G: 1_G 2_G 3_G group_H: 1_H 2_H 3_HRoary-3.8.0/t/data/allow_no_fasta_delimiter/000077500000000000000000000000001304207556500210275ustar00rootroot00000000000000Roary-3.8.0/t/data/allow_no_fasta_delimiter/annotation_1.gff000066400000000000000000000273431304207556500241160ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 2340 ##sequence-region abc|SC|contig000002 1 2340 ##sequence-region abc|SC|contig000003 1 2340 ##sequence-region abc|SC|contig000004 1 2340 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00001;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000002 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00003;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000002 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000003 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00005;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000003 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00006;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000004 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00007;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000004 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00008;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >abc|SC|contig000002 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >abc|SC|contig000003 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >abc|SC|contig000004 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGRoary-3.8.0/t/data/allow_no_fasta_delimiter/annotation_1.gff.proteome.faa.expected000066400000000000000000000030701304207556500302640ustar00rootroot00000000000000>abc_00001 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00003 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00004 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00005 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00006 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00007 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00008 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* Roary-3.8.0/t/data/allow_no_fasta_delimiter/annotation_2.gff000066400000000000000000000273431304207556500241170ustar00rootroot00000000000000##gff-version 3 ##sequence-region efg|SC|contig000001 1 2340 ##sequence-region efg|SC|contig000002 1 2340 ##sequence-region efg|SC|contig000003 1 2340 ##sequence-region efg|SC|contig000004 1 2340 efg|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=efg_00001;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=efg_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|efg_00001 efg|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=efg_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=efg_00002;product=hypothetical protein;protein_id=gnl|SC|efg_00002 efg|SC|contig000002 Prodigal:2.60 CDS 172 1131 . - 0 ID=efg_00003;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=efg_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|efg_00001 efg|SC|contig000002 Prodigal:2.60 CDS 1804 1950 . + 0 ID=efg_00004;inference=ab initio prediction:Prodigal:2.60;locus_tag=efg_00002;product=hypothetical protein;protein_id=gnl|SC|efg_00002 efg|SC|contig000003 Prodigal:2.60 CDS 172 1131 . - 0 ID=efg_00005;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=efg_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|efg_00001 efg|SC|contig000003 Prodigal:2.60 CDS 1804 1950 . + 0 ID=efg_00006;inference=ab initio prediction:Prodigal:2.60;locus_tag=efg_00002;product=hypothetical protein;protein_id=gnl|SC|efg_00002 efg|SC|contig000004 Prodigal:2.60 CDS 172 1131 . - 0 ID=efg_00007;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=efg_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|efg_00001 efg|SC|contig000004 Prodigal:2.60 CDS 1804 1950 . + 0 ID=efg_00008;inference=ab initio prediction:Prodigal:2.60;locus_tag=efg_00002;product=hypothetical protein;protein_id=gnl|SC|efg_00002 >efg|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >efg|SC|contig000002 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >efg|SC|contig000003 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >efg|SC|contig000004 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGRoary-3.8.0/t/data/allow_no_fasta_delimiter/annotation_2.gff.proteome.faa.expected000066400000000000000000000030701304207556500302650ustar00rootroot00000000000000>efg_00001 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >efg_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >efg_00003 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >efg_00004 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >efg_00005 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >efg_00006 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >efg_00007 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >efg_00008 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* Roary-3.8.0/t/data/blast_results000066400000000000000000000015741304207556500166210ustar00rootroot000000000000001234#12_01975 1234#1_01317 100.00 60 0 0 1 60 30 89 8e-38 123 1234#1_01317 1234#1_01317 100.00 89 0 0 1 89 1 89 1e-60 182 1234#20_01662 1234#1_01317 100.00 37 0 0 1 37 53 89 3e-20 77.4 1234#3_01167 1234#1_01317 98.33 60 1 0 1 60 30 89 2e-37 122 6259_6#6_02209 6259_7#20_00601 99.71 684 2 0 1 684 1427 2110 0.0 1415 6259_7#20_00601 6259_7#20_00601 100.00 2110 0 0 1 2110 1 2110 0.0 4335 6593_5#7_01700 6259_7#20_00601 99.72 1057 3 0 1 1057 1054 2110 0.0 2181 6630_2#15_02136 6259_7#20_00601 100.00 1015 0 0 1 1015 1096 2110 0.0 2104 6630_4#12_02032 6259_7#20_00601 100.00 1046 0 0 1 1046 1065 2110 0.0 2164 6631_2#21_02147 6259_7#20_00601 99.13 578 5 0 1 578 1533 2110 0.0 1199 6631_4#23_02060 6259_7#20_00601 100.00 1290 0 0 1 1290 821 2110 0.0 2663 6631_7#21_02171 6259_7#20_00601 97.37 684 0 1 1 666 1427 2110 0.0 1371 6664_1#10_02278 6259_6#6_02209 100.00 404 0 0 1 404 281 684 0.0 838Roary-3.8.0/t/data/clustered_proteins000066400000000000000000000007311304207556500176420ustar00rootroot00000000000000speH: abc_00004 abc_00004 abc_00004 abc_00006 abc_00006 abc_00006 1_2 2_2 3_2 group_2: abc_00014 abc_00014 abc_00014 1_6 2_7 abc_00015 yfnB: abc_00016 abc_00016 3_5 group_5: abc_00003 abc_00003 abc_00003 argF: 1_3 2_3 3_3 group_8: abc_01705 abc_01705 abc_01705 group_9: abc_00010 abc_00010 abc_00010 hly: 1_1 2_1 3_1 arcC1: abc_00008 abc_00008 abc_00008 group_10: abc_00011 abc_00011 abc_00011 group_4: abc_00002 abc_00002 abc_00002 group_11: abc_00012 abc_00012 abc_00012 Roary-3.8.0/t/data/clustered_proteins_pan_genome000066400000000000000000000007451304207556500220370ustar00rootroot00000000000000group_13: abc_00014 abc_00014 speH: 1_2 2_2 arcC1: abc_00008 abc_00008 group_2: abc_00002 abc_00002 yfnB: abc_00016 abc_00016 group_10: abc_00010 abc_00010 group_12: abc_00012 abc_00012 hly: 1_1 2_1 group_6: abc_00006 abc_00006 group_9: abc_01705 abc_01705 group_14: 1_6 2_7 group_3: abc_00003 abc_00003 argF: 1_3 2_3 group_11: abc_00011 abc_00011 group_4: abc_00004 abc_00004 group_18: abc_50010 group_20: abc_50014 group_16: abc_50002 group_17: 3_3 group_21: 3_5 group_19: abc_50012 Roary-3.8.0/t/data/clustered_proteins_post_analysis000066400000000000000000000004741304207556500226160ustar00rootroot00000000000000group_12: abc_00002 abc_00002 group_13: abc_00003 abc_00003 group_5: 1_6 2_7 hly: 1_1 2_1 group_6: abc_01705 abc_01705 group_8: abc_00011 abc_00011 speH: 1_2 2_2 group_2: abc_00004 abc_00004 group_3: abc_00006 abc_00006 group_7: abc_00010 abc_00010 yfnB: abc_00016 abc_00016 arcC1: abc_00008 abc_00008 argF: 1_3 2_3 Roary-3.8.0/t/data/clusters_input.fa000066400000000000000000000006541304207556500174010ustar00rootroot00000000000000>2363_5_03666 AAAAAAAAAAAAAGGGGGGGGGGGGGG >4075_2#3_03437 AAAAAAAAAAAAAGGGGGGGGGGGGGG >4075_1#8_03461 AAAAAAAAAAAAAGGGGGGGGGGGGGG >2212_3_02841 AAAAAAAAAAAAAGGGGGGGGGGGGGG >2363_5_00947 AAAAAAAAAAAAAGGGGGGGGGGGGGG >2363_7_00085 AAAAAAAAAAAAAGGGGGGGGGGGGGG >2460_2_00826 AAAAAAAAAAAAAGGGGGGGGGGGGGG >4075_1#6_04091 AAAAAAAAAAAAAGGGGGGGGGGGGGG >4075_1#3_04238 AAAAAAAAAAAAAGGGGGGGGGGGGGG >3634_6_04078 AAAAAAAAAAAAAGGGGGGGGGGGGGG Roary-3.8.0/t/data/clusters_to_inflate000066400000000000000000000022131304207556500177720ustar00rootroot00000000000000>Cluster 43 0 2184aa, >2363_5_03666... * >Cluster 44 0 2138aa, >4075_2#3_03437... * >Cluster 45 0 2130aa, >2212_1_02994... at 99.48% 1 2130aa, >2212_6_02081... at 99.01% 2 2130aa, >2363_1_00606... at 99.48% 3 2130aa, >2363_2_02124... at 99.48% 4 2130aa, >2363_3_01371... at 99.39% 5 2130aa, >2363_6_01272... at 99.15% 6 2130aa, >2363_8_00966... at 99.48% 7 2130aa, >2541_2_02425... at 99.48% 8 2130aa, >2541_3_02449... at 99.01% 9 2130aa, >2541_7_00441... at 99.48% 10 2130aa, >2541_8_00644... at 99.48% 11 2130aa, >2781_2_02909... at 99.48% 12 2130aa, >3634_6_00968... at 99.48% 13 2130aa, >3634_7_01056... at 99.39% 14 2130aa, >3634_8_02606... at 99.48% 15 2137aa, >4075_1#8_03461... * >Cluster 46 0 2132aa, >2212_3_02841... * >Cluster 47 0 2130aa, >2363_5_00947... * >Cluster 48 0 2130aa, >2363_7_00085... * >Cluster 49 0 2130aa, >2460_2_00826... * >Cluster 50 0 2054aa, >4075_1#6_04091... * >Cluster 51 0 2042aa, >4075_1#3_04238... * >Cluster 52 0 1994aa, >2212_1_01414... at 99.75% 1 1994aa, >2363_1_00811... at 99.95% 2 1994aa, >2541_2_00696... at 99.95% 3 1994aa, >2541_8_00920... at 99.95% 4 2005aa, >3634_6_04078... * 5 2005aa, >3634_7_00911... at 99.95%Roary-3.8.0/t/data/clusters_to_inflate.mcl000066400000000000000000000002131304207556500205420ustar00rootroot000000000000002363_5_03666 4075_2#3_03437 4075_1#8_03461 2212_3_02841 2363_5_00947 2363_7_00085 2460_2_00826 4075_1#6_04091 4075_1#3_04238 3634_6_04078Roary-3.8.0/t/data/clusters_to_inflate_original_input.fa000066400000000000000000000013301304207556500234610ustar00rootroot00000000000000>2212_1_01414 AAAGGGTTT >4075_1#3_04238 AAAGGGTTT >4075_1#6_04091 AAAGGGTTT >2212_1_02994 AAAGGGTTT >2363_5_00947 AAAGGGTTT >2363_7_00085 AAAGGGTTT >2460_2_00826 AAAGGGTTT >2212_3_02841 AAAGGGTTT >4075_2#3_03437 AAAGGGTTT >2363_5_03666 AAAGGGTTT >2363_1_00811 AAAGGGTTT >2212_6_02081 AAAGGGTTT >2541_8_00644 AAAGGGTTT >2781_2_02909 AAAGGGTTT >3634_6_00968 AAAGGGTTT >3634_7_01056 AAAGGGTTT >3634_8_02606 AAAGGGTTT >4075_1#8_03461 AAAGGGTTT >2541_2_00696 AAAGGGTTT >2363_1_00606 AAAGGGTTT >2541_8_00920 AAAGGGTTT >2363_2_02124 AAAGGGTTT >3634_6_04078 AAAGGGTTT >2363_3_01371 AAAGGGTTT >3634_7_00911 AAAGGGTTT >2363_6_01272 AAAGGGTTT >2363_8_00966 AAAGGGTTT >2541_2_02425 AAAGGGTTT >2541_3_02449 AAAGGGTTT >2541_7_00441 AAAGGGTTT Roary-3.8.0/t/data/clustersfile000066400000000000000000000016131304207556500164310ustar00rootroot00000000000000>Cluster 1 0 4863aa, >6259_8#9_01142... * >Cluster 2 0 4666aa, >6631_2#11_00851... * >Cluster 3 0 4516aa, >6631_4#5_01901... * >Cluster 4 0 4230aa, >6664_1#21_00211... * >Cluster 5 0 4220aa, >6259_8#13_01077... * >Cluster 6 0 4201aa, >6630_4#9_00008... * 1 4201aa, >6631_1#23_00379... at 100.00% 2 4201aa, >6631_2#7_00715... at 99.95% 3 4201aa, >6631_5#1_00087... at 99.95% 4 4201aa, >6649_8#10_00838... at 99.95% 5 4201aa, >6664_1#13_00087... at 99.95% >Cluster 7 0 4195aa, >6259_5#1_00688... * >Cluster 8 0 4165aa, >6259_5#8_00815... * >Cluster 9 0 4153aa, >6259_7#7_02078... * 1 4153aa, >6259_7#8_01884... at 100.00% 2 4153aa, >6631_2#22_01965... at 99.95% >Cluster 10 0 4153aa, >6631_5#24_01032... * >Cluster 11 0 4124aa, >6593_5#13_00457... * 1 4124aa, >6630_1#9_00031... at 100.00% 2 4124aa, >6630_3#1_00008... at 100.00% 3 4124aa, >6630_3#2_00088... at 100.00% 4 4124aa, >6631_1#4_00087... at 100.00%Roary-3.8.0/t/data/core_alignment.csv000066400000000000000000000010351304207556500175030ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1","query_2" "hly","","Alpha-toxin","2","2","1","1","7",,,"",,,,"query_1_1","query_2_1" "speH","","hypothetical protein","2","2","1","1","11",,,"",,,,"query_1_2","query_2_2" "argF","","Ornithine carbamoyltransferase","2","2","1","1","6",,,"",,,,"query_1_3","query_2_3" Roary-3.8.0/t/data/core_alignment/000077500000000000000000000000001304207556500167675ustar00rootroot00000000000000Roary-3.8.0/t/data/core_alignment/argF.fa.aln000066400000000000000000000000431304207556500207240ustar00rootroot00000000000000>query_1_3 AAAAA- >query_2_3 CCCCC-Roary-3.8.0/t/data/core_alignment/hly.fa.aln000066400000000000000000000000411304207556500206370ustar00rootroot00000000000000>query_1_1 GGGGG >query_2_1 TTTTTRoary-3.8.0/t/data/core_alignment/speH.fa.aln000066400000000000000000000000411304207556500207420ustar00rootroot00000000000000>query_1_2 TTTTT >query_2_2 GGGGGRoary-3.8.0/t/data/core_alignment_core0.66.csv000066400000000000000000000010361304207556500210260ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1","query_2","query_3" "hly","","Alpha-toxin","1","1","1","1","7",,,"",,,,"query_1_1","","" "speH","","hypothetical protein","2","2","1","1","11",,,"",,,,"query_1_2","query_2_2","" "argF","","Ornithine carbamoyltransferase","1","1","1","1","6",,,"",,,,"","query_2_3","" Roary-3.8.0/t/data/core_alignment_gene_lookup/000077500000000000000000000000001304207556500213565ustar00rootroot00000000000000Roary-3.8.0/t/data/core_alignment_gene_lookup/expected_core_gene_alignment.aln000066400000000000000000000046041304207556500277230ustar00rootroot00000000000000>query_1 ATGAATCTACCTTTACCTGATAATTATGAATTTGTGTTTTTATCTGGTGGATTATCTGGG CATGCTGCAATGATGTCATTTTTTAATGTTTGTGGCATTGGATATTTGTATCATCATATG GATTTAATGAAAAATAGATATATAGATTATTACCATTTTTCTAGGATTGAAAATTTATAT TCAATTATAACATATGGACAATACAGTTTAACGCAAGGAATGAATAATATAGGTAAATAT TTGACTTTAATTAATAAAATTCCAATTCTTTTTTTGGTAAGAGATCCCATATCAAGACTA AAAACCGGAGTAAATCATCCTATTCTAAATCCAAAAAGTATGAAGGAGATATGTTTAAAC AATGATTATAGTGATGTGTTTAAGAATAAAATGTATGTTGGCGATATTGGAAAAAATTTT TACTATTCAGAAAAGCCAAGCATGAAATATTTACCTAGATTGAAATATGAAAATTTGGGA ATATTTTTAAAACCACAAGAATTTGAGCGTTTAAAGCAAGATTCTAAGCTATTTGATGTT GCTAAAAGATATTTGAATAATTTTATTGAAGCTTTAGAAGAGAGAATAGACCTAGAAAAA GCTAAATTATTTAAAGAAAAAGACGTGTTAAACTATTTAAAAGAAAATAAAGAATTAAGA GTTAAGTTAAAAAACATATTAGATAAAGAACTTGTTCATATTAAACAACATCGTCCAGAT ATAGTAGCTTCTTGGAAATACTATCAAGAATTTGAACAAATGTGCAAGGAGTTGAATGGT AATATTTAG >query_2 ATGAATCTACCTTTACCTGATAATTATGAATTTGTGTTTTTATCTGGTGGATTATCTGGG CATGCTGCAATGATGTCATTTTTTAATGTTTGTGGCATTGGATATTTGTATCATCATATG GATTTAATGAAAAATAGATATATAGATTATTACCATTTTTCTAGGATTGAAAATTTATAT TCAATTATAACATATGGACAATACAGTTTAACGCAAGGAATGAATAATATAGGTAAATAT TTGACTTTAATTAATNNNNNNNNNATTCTTTTTTTGGTAAGAGATCCCATATCAAGACTA AAAACCGGAGTAAATCATCCTATTCTAAATCCAAAAAGTATGAAGGAGATATGTTTAAAC AATGATTATAGTGATNNNNNNNNNAATAAAATGTATGTTGGCGATATTGGAAAAAATTTT TACTATTCAGAAAAGCCAAGCATGAAATATTTACCTAGATTGAAATATGAAAATTTGGGA ATATTTTTAAAACCACAAGAATTTGAGCGTTTAAAGCAAGATTCTAAGCTATTTGATGTT GCTAAAAGATATTTGAATAATTTTATTGAAGCTTTAGAAGAGAGAATAGACCTAGAAAAA GCTAAATTATTTAAAGAAAAAGACGTGTTAAACTATTTAAAAGAAAATAAAGAATTAAGA GTTAAGTTAAAAAACATATTAGATAAAGAACTTGTTCATATTAAACAACATCGTCCAGAT ATAGTAGCTTCTTGGAAATACTATCAAGAATTTGAACAAATGTGCAAGGAGTTGAATGGT AATATTTAG >query_3 ATGAATCTACCTTTACCTGATAATTATGAATTTGTGTTTTTATCTGGTGGATTATCTGGG CATGCTGCAATGATGTCATTTTTTAATGTTTGTGGCATTGGATATTTGTATCATCATATG GATTTAATGAAAAATAGATATATAGATTATTACCATTTTTCTAGGATTGAAAATTTATAT TCAATTATAACATATGGACAATACAGTTTAACGCAAGGAATGAATAATATAGGTAAATAT TTGACTTTAATTAATAAAATTCCAATTCTTTTTTTGGTAAGAGATCCCATATCAAGACTA AAAACCGGAGTAAATCATCCTATTCTAAATCCAAAAAGTATGAAGGAGATATGTTTAAAC AATGATTATAGTGATGTGTTTAAGAATAAAATGTATGTTGGCGATATTGGAAAAAATTTT TACTATTCAGAAAAGCCAAGCATGAAATATTTACCTAGATTGAAATATGAAAATTTGGGA ATATTTTTAAAACCACAAGAATTCGAGCGTTTAAAGCAAGATTCTAAGCTATTTGATGTT GCTAAAAGATATTTGAATAATTTTATTGAAGCTTTAGAAGAGAGAATAGACCTAGAAAAA GCTAAATTATTTAAAGAAAAAGACGTGTTAAACTATTTAAAAGAAAATAAAGAATTAAGA GTTAAGTTAAAAAACATATTAGATAAAGAACTTGTTCATATTAAACAACATCGTCCAGAT ATAGTAGCTTCTTGGAAATACTATCAAGAATTTGAACAAATGTGCAAGGAGTTGAATGGT AATATTTAG Roary-3.8.0/t/data/core_alignment_gene_lookup/query_1.gff000066400000000000000000000045731304207556500234400ustar00rootroot00000000000000##gff-version 3 ##sequence-region gnl|IFR|Ef_ABC123_contig000001 1 1320 gnl|IFR|Ef_ABC123_contig000001 Prodigal:2.6 CDS 52 513 . + 0 ID=Ef_ABC123_00010;Parent=Ef_ABC123_00010_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_ABC123_00010;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_ABC123_00010 gnl|IFR|Ef_ABC123_contig000001 Prodigal:2.6 CDS 510 746 . + 0 ID=Ef_ABC123_00020;Parent=Ef_ABC123_00020_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_ABC123_00020;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_ABC123_00020 gnl|IFR|Ef_ABC123_contig000001 Prodigal:2.6 CDS 878 1207 . + 0 ID=Ef_ABC123_00030;Parent=Ef_ABC123_00030_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:A911_06907;locus_tag=Ef_ABC123_00030;product=A911_06907 putative sugar transferase:1355468 reverse MW:73559;protein_id=gnl|IFR|Ef_ABC123_00030 ##FASTA >gnl|IFR|Ef_ABC123_contig000001 GAAAAAGAAAAAATAAACTATAAAAACATATCAGCTGAACTTGCTTGGGAAATGAATCTA CCTTTACCTGATAATTATGAATTTGTGTTTTTATCTGGTGGATTATCTGGGCATGCTGCA ATGATGTCATTTTTTAATGTTTGTGGCATTGGATATTTGTATCATCATATGGATTTAATG AAAAATAGATATATAGATTATTACCATTTTTCTAGGATTGAAAATTTATATTCAATTATA ACATATGGACAATACAGTTTAACGCAAGGAATGAATAATATAGGTAAATATTTGACTTTA ATTAATAAAATTCCAATTCTTTTTTTGGTAAGAGATCCCATATCAAGACTAAAAACCGGA GTAAATCATCCTATTCTAAATCCAAAAAGTATGAAGGAGATATGTTTAAACAATGATTAT AGTGATGTGTTTAAGAATAAAATGTATGTTGGCGATATTGGAAAAAATTTTTACTATTCA GAAAAGCCAAGCATGAAATATTTACCTAGATGATTAATGAAGATACAATGTATCAGACAT CGCTTTGCTTATTATTTTCAAATAGAGATATTACTTATATTGACATGGAAGAAATAAAAC CAGCAAAGGCATTCGATACAATGTGTGATTTAGCTAACAAATTTGGTTTTAAGAAACCAA CGGATAAAAAATTTTTTGAAGGAGTTATGAATGGAGATTTAGCAGGTTTTATACCTATTA ATTTATTTATTGATAAAAAAATTTAATTTATAATAACAAAGTTATTTATAAAGATAATGA TAGCATCCATCTTCAAATCACATCTACAAATTTAATTGAAATTTATAAACAATCTAAAGA ATATATCAACTTTACTAAAGAATTTTTTGATAAACCTTTGAAATATGAAAATTTGGGAAT ATTTTTAAAACCACAAGAATTTGAGCGTTTAAAGCAAGATTCTAAGCTATTTGATGTTGC TAAAAGATATTTGAATAATTTTATTGAAGCTTTAGAAGAGAGAATAGACCTAGAAAAAGC TAAATTATTTAAAGAAAAAGACGTGTTAAACTATTTAAAAGAAAATAAAGAATTAAGAGT TAAGTTAAAAAACATATTAGATAAAGAACTTGTTCATATTAAACAACATCGTCCAGATAT AGTAGCTTCTTGGAAATACTATCAAGAATTTGAACAAATGTGCAAGGAGTTGAATGGTAA TATTTAGGAGAAAGATTTGTAAATTAATAAAAAAAAGATATAATTGTGTTTAAAATTAGA GAAAGGAATCAATATGAAACAAGGGGATTTTACAAAAGTTGCAAAACATTATCACAATAGRoary-3.8.0/t/data/core_alignment_gene_lookup/query_2.gff000066400000000000000000000045731304207556500234410ustar00rootroot00000000000000##gff-version 3 ##sequence-region gnl|IFR|Ef_EFG123_contig000001 1 1320 gnl|IFR|Ef_EFG123_contig000001 Prodigal:2.6 CDS 52 513 . + 0 ID=Ef_EFG123_00010;Parent=Ef_EFG123_00010_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_EFG123_00010;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_EFG123_00010 gnl|IFR|Ef_EFG123_contig000001 Prodigal:2.6 CDS 510 746 . + 0 ID=Ef_EFG123_00020;Parent=Ef_EFG123_00020_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_EFG123_00020;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_EFG123_00020 gnl|IFR|Ef_EFG123_contig000001 Prodigal:2.6 CDS 878 1207 . + 0 ID=Ef_EFG123_00030;Parent=Ef_EFG123_00030_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:A911_06907;locus_tag=Ef_EFG123_00030;product=A911_06907 putative sugar transferase:1355468 reverse MW:73559;protein_id=gnl|IFR|Ef_EFG123_00030 ##FASTA >gnl|IFR|Ef_EFG123_contig000001 GAAAAAGAAAAAATAAACTATAAAAACATATCAGCTGAACTTGCTTGGGAAATGAATCTA CCTTTACCTGATAATTATGAATTTGTGTTTTTATCTGGTGGATTATCTGGGCATGCTGCA ATGATGTCATTTTTTAATGTTTGTGGCATTGGATATTTGTATCATCATATGGATTTAATG AAAAATAGATATATAGATTATTACCATTTTTCTAGGATTGAAAATTTATATTCAATTATA ACATATGGACAATACAGTTTAACGCAAGGAATGAATAATATAGGTAAATATTTGACTTTA ATTAATAANNNNNNNATTCTTTTTTTGGTAAGAGATCCCATATCAAGACTAAAAACCGGA GTAAATCATCCTATTCTAAATCCAAAAAGTATGAAGGAGATATGTTTAAACAATGATTAT AGTGATGTNNNNNNNAATAAAATGTATGTTGGCGATATTGGAAAAAATTTTTACTATTCA GAAAAGCCAAGCATGAAATATTTACCTAGATGATTAATGAAGATACAATGTATCAGACAT CGCTTTGCNNNNNNTTTTCAAATAGAGATATTACTTATATTGACATGGAAGAAATAAAAC CAGCAAAGGCATTCGATACAATGTGTGATTTAGCTAACAAATTTGGTTTTAAGAAACCAA CGGATAAAAAATTTTTTGAAGGAGTTATGAATGGAGATTTAGCAGGTTTTATACCTATTA ATTTATTTNNNNNNNAAAAAATTTAATTTATAATAACAAAGTTATTTATAAAGATAATGA TAGCATCCATCTTCAAATCACATCTACAAATTTAATTGAAATTTATAAACAATCTAAAGA ATATATCAACTTTACTAAAGAATTTTTTGATAAACCTTTGAAATATGAAAATTTGGGAAT ATTTTTAAAACCACAAGAATTTGAGCGTTTAAAGCAAGATTCTAAGCTATTTGATGTTGC TAAAAGATATTTGAATAATTTTATTGAAGCTTTAGAAGAGAGAATAGACCTAGAAAAAGC TAAATTATTTAAAGAAAAAGACGTGTTAAACTATTTAAAAGAAAATAAAGAATTAAGAGT TAAGTTAAAAAACATATTAGATAAAGAACTTGTTCATATTAAACAACATCGTCCAGATAT AGTAGCTTCTTGGAAATACTATCAAGAATTTGAACAAATGTGCAAGGAGTTGAATGGTAA TATTTAGGAGAAAGATTTGTAAATTAATAAAAAAAAGATATAATTGTGTTTAAAATTAGA GAAAGGAATCAATATGAAACAAGGGGATTTTACAAAAGTTGCAAAACATTATCACAATAGRoary-3.8.0/t/data/core_alignment_gene_lookup/query_3.gff000066400000000000000000000045731304207556500234420ustar00rootroot00000000000000##gff-version 3 ##sequence-region gnl|IFR|Ef_HIJ123_contig000001 1 1320 gnl|IFR|Ef_HIJ123_contig000001 Prodigal:2.6 CDS 52 513 . + 0 ID=Ef_HIJ123_00010;Parent=Ef_HIJ123_00010_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_HIJ123_00010;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_HIJ123_00010 gnl|IFR|Ef_HIJ123_contig000001 Prodigal:2.6 CDS 510 746 . + 0 ID=Ef_HIJ123_00020;Parent=Ef_HIJ123_00020_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:CJSA_1363;locus_tag=Ef_HIJ123_00020;product=CJSA_1363 putative sugar transferase:1372570 reverse MW:76273;protein_id=gnl|IFR|Ef_HIJ123_00020 gnl|IFR|Ef_HIJ123_contig000001 Prodigal:2.6 CDS 878 1207 . + 0 ID=Ef_HIJ123_00030;Parent=Ef_HIJ123_00030_gene;inference=ab initio prediction:Prodigal:2.6,similar to AA sequence:RefSeq:A911_06907;locus_tag=Ef_HIJ123_00030;product=A911_06907 putative sugar transferase:1355468 reverse MW:73559;protein_id=gnl|IFR|Ef_HIJ123_00030 ##FASTA >gnl|IFR|Ef_HIJ123_contig000001 GAAAAAGAAAAAATAAACTATAAAAACATATCAGCTGAACTTGCTTGGGAAATGAATCTA CCTTTACCTGATAATTATGAATTTGTGTTTTTATCTGGTGGATTATCTGGGCATGCTGCA ATGATGTCATTTTTTAATGTTTGTGGCATTGGATATTTGTATCATCATATGGATTTAATG AAAAATAGATATATAGATTATTACCATTTTTCTAGGATTGAAAATTTATATTCAATTATA ACATATGGACAATACAGTTTAACGCAAGGAATGAATAATATAGGTAAATATTTGACTTTA ATTAATAAAATTCCAATTCTTTTTTTGGTAAGAGATCCCATATCAAGACTAAAAACCGGA GTAAATCATCCTATTCTAAATCCAAAAAGTATGAAGGAGATATGTTTAAACAATGATTAT AGTGATGTGTTTAAGAATAAAATGTATGTTGGCGATATTGGAAAAAATTTTTACTATTCA GAAAAGCCAAGCATGAAATATTTACCTAGATGATTAATGAAGATACAATGTATCAGACAT CGCTTTGCTTATTATTTTCAAATAGAGATATTACTTATATTGACATGGAAGAAATAAAAC CAGCAAAGGCATTCGATACAATGTGTGATTCAGCTAACAAATTTGGTTTTAAGAAACCAA CGGATAAAAAATTTTTTGAAGGAGTTATGAATGGAGATTTAGCAGGTTTTATACCTATTA ATTTATTTATTGATAAAAAAATTTAATTTATAATAACAAAGTTATTTATAAAGATAATGA TAGCATCCATCTTCAAATCACATCTACAAATTTAATTGAAATTTATAAACAATCTAAAGA ATATATCAACTTTACTAAAGAATTTTTTGATAAACCTTTGAAATATGAAAATTTGGGAAT ATTTTTAAAACCACAAGAATTCGAGCGTTTAAAGCAAGATTCTAAGCTATTTGATGTTGC TAAAAGATATTTGAATAATTTTATTGAAGCTTTAGAAGAGAGAATAGACCTAGAAAAAGC TAAATTATTTAAAGAAAAAGACGTGTTAAACTATTTAAAAGAAAATAAAGAATTAAGAGT TAAGTTAAAAAACATATTAGATAAAGAACTTGTTCATATTAAACAACATCGTCCAGATAT AGTAGCTTCTTGGAAATACTATCAAGAATTTGAACAAATGTGCAAGGAGTTGAATGGTAA TATTTAGGAGAAAGATCTGTAAATTAATAAAAAAAAGATATAACTGTGTTTAAAATTAGA GAAAGGAATCAATATGAAACAAGGGGATTTTACAAAAGTTGCAAAACATTATCACAATAGRoary-3.8.0/t/data/core_group_statistics.csv000066400000000000000000000022061304207556500211340ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1","query_2" "group_5","","Gonococcal growth inhibitor III","2","2","1","3","2",,,"",,,,"1_6","2_7" "hly","","Alpha-toxin","2","2","1.01","1","7",,,"",,,,"1_1","2_1" "speH","","hypothetical protein","2","2","1","1","11",,,"",,,,"1_2","2_2" "argF","","Ornithine carbamoyltransferase","2","2","1","1","6",,,"",,,,"1_3","2_3" "group_12","","hypothetical protein","1","2","2","2","8",,,"",,,,"","abc_00002 abc_00002" "group_13","","hypothetical protein","1","2","2","1","9",,,"",,,,"","abc_00003 abc_00003" "group_6","","","1","2","1.99","","","","","",,,,"","abc_01705 abc_01705" "group_8","","C4-dicarboxylate transporter/malic acid transport protein","1","2","2","1","3",,,"",,,,"","abc_00011 abc_00011" "group_2","","superantigen-like protein","1","2","2","1","10",,,"",,,,"","abc_00004 abc_00004" "arcC1","","Carbamate kinase 1","2","2","0.99","1","5",,,"",,,,"","abc_00008 abc_00008" Roary-3.8.0/t/data/empty_file000066400000000000000000000000001304207556500160470ustar00rootroot00000000000000Roary-3.8.0/t/data/example_1.faa000066400000000000000000000030311304207556500163220ustar00rootroot00000000000000>1234#10_00001 nudix hydrolase MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP SPLFTEYMLDAVNLYLKEYAPLVH* >1234#10_00002 intramembrane serine protease MIIKLKIILNSYLIYYFLRGQNTLIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQ YFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALI SSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMV YSDITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFF YSNRS* >1234#10_00003 hypothetical protein VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >1234#10_00005 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* >1234#10_00006 imidazole glycerol phosphate synthase subunit HisH MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV EKNNIFGTQFHPEKSHTHGLKLLENFIRFI* >1234#10_00007 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase MIVIPAIDLFDNCAVRLFKGNYEEKKIYSSEPWKLAESFAKNGATLLHLVDLNGARNQLG VNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYALDNY GKERVVVAVDARDGIVKIAGWEKDSGIHYRDLLERLVKAGIEHIVFTDIAQDGTLAGPNL EAYREILNSYPFQVIASGGIASLKDLMDLSSLKTKISLYGVITGKALYEGKLDLAKAISS I* Roary-3.8.0/t/data/example_2.faa000066400000000000000000000026271304207556500163350ustar00rootroot00000000000000>1234#10_00016 hypothetical protein MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL DEIMVEPEKPKKK* >1234#10_00017 LipL45-like lipoprotein MKRYLSIVILCTFAMLLLVCSTNKSSGSDQVKTESNATSARIVWLLGDVKILSDSGEKKA ELGASLSSTDRVVTGPNGGAEIMVADSGIIKMSKNSDIEISSLMNPNGSDTNVQVNYGKI VTMVKKGQKTTEFTVSTPTALAGVRGTSFLTSVESPEGSKINCAKANCTVRFAVIEGTIA VSKKGESSEVILSKNRELRIEKNQKLTDKLIRSLQNDSLSEMKELIVLHKNETFEYGKLV EELKSSSEELKILSQSGSVEEVKAAFQKREADRNNADEITKTAKAVNETKYVQQDVQKEK LKLNPKETF* >1234#10_00018 putative lipoprotein MDFSFNLVDNNGTVMRSTFSPIRFFTFSFLWILIDCSSVQKIENFNSVLQEPTFKSLKEE EAILGGSSDSDYKIRKTGNTIPVFVLSPIQTPEGMDSKLAAFLSDEVRLIWAKVKGKQVR IQEMSWKNPSQLSQELKRLNVDAVIKTDIREVSGKWVVNQKITDPVKEIVYGSVDGSFQS PKIEDELQANQAYYLKHGSGVLALDAKSSLVPIWEKSLSSGEIDSILKKSIQGYLSFSAS SADTEVLFQGEKIGIASFRNYPLPEGLQQIQITRPGQKDISKSLQIRSGQTISIYQEWKE DRTLGGVRILSFPEALQVALDGLKMGETPFYRSNLTPGAMQLELVRETENGPLVYYEGQL IVDADKITEIALPYKTDNLISEPEFWKLSGEKGFQAFSGKTLDFQNVSSLPPGWYGVFSA PFVPENMELEGIIPITAESDSGIVAISFHTSKKTISLEYEKERLSVYSFPSNGNNVGTYK FKKEDKEDGRPFRIITDVKEGTIRLYLGYSKVLEDRLDVSGVWRISILTRGENFSKRSPL RNLKIEYKGYK* Roary-3.8.0/t/data/example_3.faa000066400000000000000000000044451304207556500163360ustar00rootroot00000000000000>3333#10_00016 hypothetical protein MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL DEIMVEPEKPKKK* >3333#10_00018 putative lipoprotein MDFSFNLVDNNGTVMRSTFSPIRFFTFSFLWILIDCSSVQKIENFNSVLQEPTFKSLKEE EAILGGSSDSDYKIRKTGNTIPVFVLSPIQTPEGMDSKLAAFLSDEVRLIWAKVKGKQVR IQEMSWKNPSQLSQELKRLNVDAVIKTDIREVSGKWVVNQKITDPVKEIVYGSVDGSFQS PKIEDELQANQAYYLKHGSGVLALDAKSSLVPIWEKSLSSGEIDSILKKSIQGYLSFSAS SADTEVLFQGEKIGIASFRNYPLPEGLQQIQITRPGQKDISKSLQIRSGQTISIYQEWKE DRTLGGVRILSFPEALQVALDGLKMGETPFYRSNLTPGAMQLELVRETENGPLVYYEGQL IVDADKITEIALPYKTDNLISEPEFWKLSGEKGFQAFSGKTLDFQNVSSLPPGWYGVFSA PFVPENMELEGIIPITAESDSGIVAISFHTSKKTISLEYEKERLSVYSFPSNGNNVGTYK FKKEDKEDGRPFRIITDVKEGTIRLYLGYSKVLEDRLDVSGVWRISILTRGENFSKRSPL RNLKIEYKGYK* >3333#10_00001 nudix hydrolase MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP SPLFTEYMLDAVNLYLKEYAPLVH* >3333#10_00003 hypothetical protein VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >3333#10_00005 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* >3333#10_00006 imidazole glycerol phosphate synthase subunit HisH MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV EKNNIFGTQFHPEKSHTHGLKLLENFIRFI* >3333#10_00007 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase MIVIPAIDLFDNCAVRLFKGNYEEKKIYSSEPWKLAESFAKNGATLLHLVDLNGARNQLG VNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYALDNY GKERVVVAVDARDGIVKIAGWEKDSGIHYRDLLERLVKAGIEHIVFTDIAQDGTLAGPNL EAYREILNSYPFQVIASGGIASLKDLMDLSSLKTKISLYGVITGKALYEGKLDLAKAISS I* Roary-3.8.0/t/data/example_annotation.gff000066400000000000000000000472321304207556500203620ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00001;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=abc_00005;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 ID=abc_00006;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 ID=abc_00007;eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=abc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 ID=abc_00008;eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=abc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 ID=abc_01705;inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=abc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 ID=abc_00010;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 ID=abc_00011;inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=abc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 ID=abc_00012;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 ID=abc_00013;inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=abc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 ID=abc_00014;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 ID=abc_00015;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 ID=abc_00016;eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=abc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/example_annotation.gff.proteome.faa.expected000066400000000000000000000063721304207556500245410ustar00rootroot00000000000000>abc_00001 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00003 MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYV SLKEH* >abc_00004 MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHF SFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQL WWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAR EALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD* >abc_00005 MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR QTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS N* >abc_00006 MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHF SLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEG YWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIR QTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKS N* >abc_00007 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTR CAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEN SGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMG MNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPD EVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVT DEVFESKASVVFQEAENRMHTIKAVMVATLGEF* >abc_00008 MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLN YAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPA FNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKN DTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINF NTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAA LEGKVGTVIKK* >abc_01705 VENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS* >abc_00010 MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGV PSEMIKDRQRKNNGV* >abc_00011 MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQ LNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKY LKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKA FPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLK EPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFF LKKENQDKFLRNASQ* >abc_00012 MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKKERSLDNMSLKNAELLYKFANSIFSN EN* >abc_00014 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF* >abc_00015 MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF* >abc_00016 LGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKL TKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYI VTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVG DSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR* Roary-3.8.0/t/data/example_annotation_2.gff000066400000000000000000000472321304207556500206030ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00001;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=abc_00005;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 ID=abc_00006;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 ID=abc_00007;eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=abc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 ID=abc_00008;eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=abc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 ID=abc_01705;inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=abc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 ID=abc_00010;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 ID=abc_00011;inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=abc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 ID=abc_00012;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 ID=abc_00013;inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=abc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 ID=abc_00014;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 ID=abc_00015;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 ID=abc_00016;eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=abc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/example_annotation_no_fasta_line.gff000066400000000000000000000472221304207556500232420ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00001;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=abc_00005;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 ID=abc_00006;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 ID=abc_00007;eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=abc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 ID=abc_00008;eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=abc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 ID=abc_01705;inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=abc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 ID=abc_00010;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 ID=abc_00011;inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=abc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 ID=abc_00012;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 ID=abc_00013;inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=abc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 ID=abc_00014;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 ID=abc_00015;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 ID=abc_00016;eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=abc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/example_groups000066400000000000000000000003251304207556500167560ustar00rootroot00000000000000group_1: 1234#10_00001 1234#10_00002 group_2: 1234#10_00003 1234#10_00018 1234#10_00005 group_3: 1234#10_00005 1234#10_00005 group_4: 1234#10_00006 1234#10_00007 group_5: 1234#10_00016 group_6: 1234#10_00017Roary-3.8.0/t/data/example_groups_without_labels000066400000000000000000000002371304207556500220650ustar00rootroot000000000000001234#10_00001 1234#10_00002 1234#10_00003 1234#10_00018 1234#10_00005 1234#10_00005 1234#10_00005 1234#10_00006 1234#10_00007 1234#10_00016 1234#10_00017Roary-3.8.0/t/data/exp_qc_report.csv000066400000000000000000000002311304207556500173640ustar00rootroot00000000000000Sample,Genus,Species assembly1,Clostridium,Clostridium difficile assembly2,Escherichia,Escherichia coli assembly3,Streptococcus,Streptococcus pneumoniae Roary-3.8.0/t/data/exp_qc_report_real.csv000066400000000000000000000001571304207556500203760ustar00rootroot00000000000000Sample,Genus,Species query_1,Staphylococcus,Staphylococcus aureus query_2,Staphylococcus,Staphylococcus aureus Roary-3.8.0/t/data/expected_0.seq000066400000000000000000000002631304207556500165340ustar00rootroot00000000000000>1234#10_00001 nudix hydrolase MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP SPLFTEYMLDAVNLYLKEYAPLVH* Roary-3.8.0/t/data/expected_5.seq000066400000000000000000000005521304207556500165420ustar00rootroot00000000000000>1234#10_00007 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase MIVIPAIDLFDNCAVRLFKGNYEEKKIYSSEPWKLAESFAKNGATLLHLVDLNGARNQLG VNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYALDNY GKERVVVAVDARDGIVKIAGWEKDSGIHYRDLLERLVKAGIEHIVFTDIAQDGTLAGPNL EAYREILNSYPFQVIASGGIASLKDLMDLSSLKTKISLYGVITGKALYEGKLDLAKAISS I* Roary-3.8.0/t/data/expected_accessory_binary_genes.fa000066400000000000000000000000501304207556500227050ustar00rootroot00000000000000>aaa AAAA >bbb CAAA >ccc CCAA >ddd CCCA Roary-3.8.0/t/data/expected_accessory_binary_genes_bounded.fa000066400000000000000000000000401304207556500244040ustar00rootroot00000000000000>aaa AA >bbb AA >ccc CA >ddd CC Roary-3.8.0/t/data/expected_clustered_proteins000066400000000000000000000004611304207556500215230ustar00rootroot00000000000000group_5: 1234#10_00006 3333#10_00006 group_1: 1234#10_00001 3333#10_00001 group_6: 1234#10_00007 3333#10_00007 group_9: 1234#10_00018 3333#10_00018 group_3: 1234#10_00003 3333#10_00003 group_7: 1234#10_00016 3333#10_00016 group_4: 1234#10_00005 3333#10_00005 group_8: 1234#10_00017 group_2: 1234#10_00002 Roary-3.8.0/t/data/expected_clusters_to_inflate000066400000000000000000000006161304207556500216600ustar00rootroot000000000000002363_5_03666 4075_2#3_03437 4075_1#8_03461 2212_1_02994 2212_6_02081 2363_1_00606 2363_2_02124 2363_3_01371 2363_6_01272 2363_8_00966 2541_2_02425 2541_3_02449 2541_7_00441 2541_8_00644 2781_2_02909 3634_6_00968 3634_7_01056 3634_8_02606 2212_3_02841 2363_5_00947 2363_7_00085 2460_2_00826 4075_1#6_04091 4075_1#3_04238 3634_6_04078 2212_1_01414 2363_1_00811 2541_2_00696 2541_8_00920 3634_7_00911 Roary-3.8.0/t/data/expected_combined_proteome.fa000066400000000000000000000056601304207556500216730ustar00rootroot00000000000000>1234#10_00001 nudix hydrolase MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP SPLFTEYMLDAVNLYLKEYAPLVH* >1234#10_00002 intramembrane serine protease MIIKLKIILNSYLIYYFLRGQNTLIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQ YFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALI SSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMV YSDITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFF YSNRS* >1234#10_00003 hypothetical protein VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >1234#10_00005 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* >1234#10_00006 imidazole glycerol phosphate synthase subunit HisH MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV EKNNIFGTQFHPEKSHTHGLKLLENFIRFI* >1234#10_00007 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase MIVIPAIDLFDNCAVRLFKGNYEEKKIYSSEPWKLAESFAKNGATLLHLVDLNGARNQLG VNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYALDNY GKERVVVAVDARDGIVKIAGWEKDSGIHYRDLLERLVKAGIEHIVFTDIAQDGTLAGPNL EAYREILNSYPFQVIASGGIASLKDLMDLSSLKTKISLYGVITGKALYEGKLDLAKAISS I* >1234#10_00016 hypothetical protein MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL DEIMVEPEKPKKK* >1234#10_00017 LipL45-like lipoprotein MKRYLSIVILCTFAMLLLVCSTNKSSGSDQVKTESNATSARIVWLLGDVKILSDSGEKKA ELGASLSSTDRVVTGPNGGAEIMVADSGIIKMSKNSDIEISSLMNPNGSDTNVQVNYGKI VTMVKKGQKTTEFTVSTPTALAGVRGTSFLTSVESPEGSKINCAKANCTVRFAVIEGTIA VSKKGESSEVILSKNRELRIEKNQKLTDKLIRSLQNDSLSEMKELIVLHKNETFEYGKLV EELKSSSEELKILSQSGSVEEVKAAFQKREADRNNADEITKTAKAVNETKYVQQDVQKEK LKLNPKETF* >1234#10_00018 putative lipoprotein MDFSFNLVDNNGTVMRSTFSPIRFFTFSFLWILIDCSSVQKIENFNSVLQEPTFKSLKEE EAILGGSSDSDYKIRKTGNTIPVFVLSPIQTPEGMDSKLAAFLSDEVRLIWAKVKGKQVR IQEMSWKNPSQLSQELKRLNVDAVIKTDIREVSGKWVVNQKITDPVKEIVYGSVDGSFQS PKIEDELQANQAYYLKHGSGVLALDAKSSLVPIWEKSLSSGEIDSILKKSIQGYLSFSAS SADTEVLFQGEKIGIASFRNYPLPEGLQQIQITRPGQKDISKSLQIRSGQTISIYQEWKE DRTLGGVRILSFPEALQVALDGLKMGETPFYRSNLTPGAMQLELVRETENGPLVYYEGQL IVDADKITEIALPYKTDNLISEPEFWKLSGEKGFQAFSGKTLDFQNVSSLPPGWYGVFSA PFVPENMELEGIIPITAESDSGIVAISFHTSKKTISLEYEKERLSVYSFPSNGNNVGTYK FKKEDKEDGRPFRIITDVKEGTIRLYLGYSKVLEDRLDVSGVWRISILTRGENFSKRSPL RNLKIEYKGYK* Roary-3.8.0/t/data/expected_combined_proteome_with_filtering.fa000066400000000000000000000105621304207556500247660ustar00rootroot00000000000000>1234#10_00001 nudix hydrolase MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP SPLFTEYMLDAVNLYLKEYAPLVH* >1234#10_00002 intramembrane serine protease MIIKLKIILNSYLIYYFLRGQNTLIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQ YFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALI SSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMV YSDITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFF YSNRS* >1234#10_00003 hypothetical protein VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >1234#10_00005 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* >1234#10_00006 imidazole glycerol phosphate synthase subunit HisH MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV EKNNIFGTQFHPEKSHTHGLKLLENFIRFI* >1234#10_00007 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase MIVIPAIDLFDNCAVRLFKGNYEEKKIYSSEPWKLAESFAKNGATLLHLVDLNGARNQLG VNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYALDNY GKERVVVAVDARDGIVKIAGWEKDSGIHYRDLLERLVKAGIEHIVFTDIAQDGTLAGPNL EAYREILNSYPFQVIASGGIASLKDLMDLSSLKTKISLYGVITGKALYEGKLDLAKAISS I* >1234_00186 GGDEF family protein MNFENEYDLEKLVNNSLDLLTIVDLSGNVLLVNPAFERTLGWKKEDLVGKDPFHLLHPED KESTYKEFEKLNQGLLTLSFQNRYICADGQYRYFSWTASPDLVSGLVYVTGRDITDVIES NRKISQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIHACDKESHPLSLLMID ADHFKDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEFIAALPNTSEPEANQI AERLVQTVREFSWEKRSVTISVGITTYNFNPTSKSINSEYLLNLIEQADKALYCSKVSGR XXXXXXXXXXXXXXXXXXXYYI* >1234_00325 only a few unknowns so keep MAFDPSVPQQQAQAPAGTLLFPEGSSANTLNVLHSGTVRYLTEVPGGRKLELFKLNGANL TPGSVALFTSGRYPFHLQAEEACVISTYAMNRDTISKSVGSRVSLGLMVARTLLREITEL FKKSNQIRKITSEIEKVNDNLSILYYQFNPSVFPDIKPGSPIPEVSADVVDPVMRLCREN LKLFFDNGGILPDRPSPQFLEEEHESQLTRLYPEEIDFQDGEFNFIRKLVMQDPKILNVL FTADPSMLAYVCSKLANVLDQISGILKTCLTDLDEAFRIFFIGENSLVEKFYLILDITSS GYGTAPAEFVIPVLGAFAGKIEKYKNGHQALFGVPVANISPNTQAFQSKAVTLAKKMEET APKVQAPVTSSATAGVDVDAIRKELDNSASVIIQFSGLGAEQIKEFSALMVKVKSLKNPL DPEGDNRKVRRTLGRHYWDMYQECFTKYMNSNRNVPKPVELMLKYGYFDETLVDDSQIAF MYTQKDPANFTSNVPISLGTEWLEKVFKREVPTSLDEMGQNFFEKVKLENRNIVIKKESD IPPELDNPDTRLKFEFASLYEANVRLTSGSPATHFPILTKFHSQMAIDKSYVSKKILEEV VHELMAVDYSIFHREVIYNNNELGITKEFIQKCVIPDFILVPSIGTKVMMWQDLSIHRGA GSKESPGRIVLPIFAQGDLKTMVADALAAFRWELTKSILGAEWNNVGNPSITADYTDYIQ FFKKNKDLSMEIKEKLASDFKRFRNDRDIFANDYQLWMKYEADGVQRLNKVVRGIFYRHI PFSKQVRDKVAXXXXXXXXXXXXXLLPLQRSITDLLILEIENILK* >1234_00377 Uncharacterized protein conserved in bacteria MTLNEFAKNVLFGSGLEDKLFSPPVHPVDIRSFDFLNVPSLPAREKKIQISEQKSKIPRL EQLFNEENRIITLHHFANHELMAIELFAWAILKFQDAPSSIRFGLYRTLLEEQTHLKMYL SEMKKGGMELGDRPLNFIFWKQVPKMQTLEKFXXXXXXXXXXXXXXXXXF* >1234#10_00016 hypothetical protein MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL DEIMVEPEKPKKK* >1234#10_00017 LipL45-like lipoprotein MKRYLSIVILCTFAMLLLVCSTNKSSGSDQVKTESNATSARIVWLLGDVKILSDSGEKKA ELGASLSSTDRVVTGPNGGAEIMVADSGIIKMSKNSDIEISSLMNPNGSDTNVQVNYGKI VTMVKKGQKTTEFTVSTPTALAGVRGTSFLTSVESPEGSKINCAKANCTVRFAVIEGTIA VSKKGESSEVILSKNRELRIEKNQKLTDKLIRSLQNDSLSEMKELIVLHKNETFEYGKLV EELKSSSEELKILSQSGSVEEVKAAFQKREADRNNADEITKTAKAVNETKYVQQDVQKEK LKLNPKETF* >1234#10_00018 putative lipoprotein MDFSFNLVDNNGTVMRSTFSPIRFFTFSFLWILIDCSSVQKIENFNSVLQEPTFKSLKEE EAILGGSSDSDYKIRKTGNTIPVFVLSPIQTPEGMDSKLAAFLSDEVRLIWAKVKGKQVR IQEMSWKNPSQLSQELKRLNVDAVIKTDIREVSGKWVVNQKITDPVKEIVYGSVDGSFQS PKIEDELQANQAYYLKHGSGVLALDAKSSLVPIWEKSLSSGEIDSILKKSIQGYLSFSAS SADTEVLFQGEKIGIASFRNYPLPEGLQQIQITRPGQKDISKSLQIRSGQTISIYQEWKE DRTLGGVRILSFPEALQVALDGLKMGETPFYRSNLTPGAMQLELVRETENGPLVYYEGQL IVDADKITEIALPYKTDNLISEPEFWKLSGEKGFQAFSGKTLDFQNVSSLPPGWYGVFSA PFVPENMELEGIIPITAESDSGIVAISFHTSKKTISLEYEKERLSVYSFPSNGNNVGTYK FKKEDKEDGRPFRIITDVKEGTIRLYLGYSKVLEDRLDVSGVWRISILTRGENFSKRSPL RNLKIEYKGYK* Roary-3.8.0/t/data/expected_complement_of_groups.gg000066400000000000000000000001321304207556500224230ustar00rootroot00000000000000group_3: 1_3 3_3 group_4: 2_4 3_4 group_2: 1_2 2_2 group_7: 2_7 group_5: 3_5 group_6: 1_6 Roary-3.8.0/t/data/expected_complement_of_groups_core0.66.gg000066400000000000000000000000471304207556500237520ustar00rootroot00000000000000group_7: 2_7 group_5: 3_5 group_6: 1_6 Roary-3.8.0/t/data/expected_core_60_summary_statistics.txt000066400000000000000000000003011304207556500237010ustar00rootroot00000000000000Core genes (60% <= strains <= 100%) 75 Soft core genes (59% <= strains < 60%) 0 Shell genes (15% <= strains < 59%) 20 Cloud genes (0% <= strains < 15%) 0 Total genes (0% <= strains <= 100%) 95 Roary-3.8.0/t/data/expected_core_gene_alignment.aln000066400000000000000000000000641304207556500223420ustar00rootroot00000000000000>query_1 AAAAA-GGGGGTTTTT >query_2 CCCCC-TTTTTGGGGG Roary-3.8.0/t/data/expected_core_gene_alignment_core0.66.aln000066400000000000000000000000551304207556500236640ustar00rootroot00000000000000>query_1 TTTTT >query_2 GGGGG >query_3 NNNNN Roary-3.8.0/t/data/expected_create_pan_genome.fa000066400000000000000000000052211304207556500216250ustar00rootroot00000000000000>1234#10_00016 (null) MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL DEIMVEPEKPKKK* >1234#10_00017 (null) MKRYLSIVILCTFAMLLLVCSTNKSSGSDQVKTESNATSARIVWLLGDVKILSDSGEKKA ELGASLSSTDRVVTGPNGGAEIMVADSGIIKMSKNSDIEISSLMNPNGSDTNVQVNYGKI VTMVKKGQKTTEFTVSTPTALAGVRGTSFLTSVESPEGSKINCAKANCTVRFAVIEGTIA VSKKGESSEVILSKNRELRIEKNQKLTDKLIRSLQNDSLSEMKELIVLHKNETFEYGKLV EELKSSSEELKILSQSGSVEEVKAAFQKREADRNNADEITKTAKAVNETKYVQQDVQKEK LKLNPKETF* >1234#10_00018 (null) MDFSFNLVDNNGTVMRSTFSPIRFFTFSFLWILIDCSSVQKIENFNSVLQEPTFKSLKEE EAILGGSSDSDYKIRKTGNTIPVFVLSPIQTPEGMDSKLAAFLSDEVRLIWAKVKGKQVR IQEMSWKNPSQLSQELKRLNVDAVIKTDIREVSGKWVVNQKITDPVKEIVYGSVDGSFQS PKIEDELQANQAYYLKHGSGVLALDAKSSLVPIWEKSLSSGEIDSILKKSIQGYLSFSAS SADTEVLFQGEKIGIASFRNYPLPEGLQQIQITRPGQKDISKSLQIRSGQTISIYQEWKE DRTLGGVRILSFPEALQVALDGLKMGETPFYRSNLTPGAMQLELVRETENGPLVYYEGQL IVDADKITEIALPYKTDNLISEPEFWKLSGEKGFQAFSGKTLDFQNVSSLPPGWYGVFSA PFVPENMELEGIIPITAESDSGIVAISFHTSKKTISLEYEKERLSVYSFPSNGNNVGTYK FKKEDKEDGRPFRIITDVKEGTIRLYLGYSKVLEDRLDVSGVWRISILTRGENFSKRSPL RNLKIEYKGYK* >1234#10_00001 (null) MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP SPLFTEYMLDAVNLYLKEYAPLVH* >1234#10_00002 (null) MIIKLKIILNSYLIYYFLRGQNTLIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQ YFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALI SSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMV YSDITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFF YSNRS* >1234#10_00003 (null) VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >1234#10_00005 (null) LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* >1234#10_00006 (null) MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV EKNNIFGTQFHPEKSHTHGLKLLENFIRFI* >1234#10_00007 (null) MIVIPAIDLFDNCAVRLFKGNYEEKKIYSSEPWKLAESFAKNGATLLHLVDLNGARNQLG VNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYALDNY GKERVVVAVDARDGIVKIAGWEKDSGIHYRDLLERLVKAGIEHIVFTDIAQDGTLAGPNL EAYREILNSYPFQVIASGGIASLKDLMDLSSLKTKISLYGVITGKALYEGKLDLAKAISS I* Roary-3.8.0/t/data/expected_example_annotation_1.faa000066400000000000000000000067401304207556500224470ustar00rootroot00000000000000>abc_00001 [revcomp]:[translate(1)] MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN* >abc_00002 [translate(1)] MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00003 [translate(1)] MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH* >abc_00004 [revcomp]:[translate(1)] MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD* >abc_00005 [revcomp]:[translate(1)] MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN* >abc_00006 [revcomp]:[translate(1)] MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKSN* >abc_00007 [translate(1)] MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAENSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF* >abc_00008 [translate(1)] MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK* >abc_01705 [translate(1)] VENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS* >abc_00010 [translate(1)] MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV* >abc_00011 [revcomp]:[translate(1)] MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKENQDKFLRNASQ* >abc_00012 [translate(1)] MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKKERSLDNMSLKNAELLYKFANSIFSNEN* >abc_00014 [translate(1)] MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF* >abc_00015 [translate(1)] MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF* >abc_00016 [translate(1)] LGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR* Roary-3.8.0/t/data/expected_filtered_original_input.fa000066400000000000000000000011101304207556500230640ustar00rootroot00000000000000>4075_1#3_04238 AAAGGGTTT >4075_1#6_04091 AAAGGGTTT >2212_1_02994 AAAGGGTTT >2363_5_00947 AAAGGGTTT >2363_7_00085 AAAGGGTTT >2460_2_00826 AAAGGGTTT >2212_3_02841 AAAGGGTTT >4075_2#3_03437 AAAGGGTTT >2363_5_03666 AAAGGGTTT >2212_6_02081 AAAGGGTTT >2541_8_00644 AAAGGGTTT >2781_2_02909 AAAGGGTTT >3634_6_00968 AAAGGGTTT >3634_7_01056 AAAGGGTTT >3634_8_02606 AAAGGGTTT >4075_1#8_03461 AAAGGGTTT >2363_1_00606 AAAGGGTTT >2363_2_02124 AAAGGGTTT >2363_3_01371 AAAGGGTTT >2363_6_01272 AAAGGGTTT >2363_8_00966 AAAGGGTTT >2541_2_02425 AAAGGGTTT >2541_3_02449 AAAGGGTTT >2541_7_00441 AAAGGGTTT Roary-3.8.0/t/data/expected_g2_g5_pan_genome_reference.fa000066400000000000000000000072761304207556500233170ustar00rootroot00000000000000>1_1 hly ATGAAAACACGTATAGTCAGCTCAGTAACAACAACACTATTGCTAGGTTCCATATTAATG AATCCTGTCGCTAATGCCGCAGATTCTGATATTAATATTAAAACCGGTACTACAGATATT GGAAGCAATACTACAGTAAAAACAGGTGATTTAGTCACTTATGATAAAGAAAATGGCATG CACAAAAAAGTATTTTATAGTTTTATCGATGATAAAAATCACAATAAAAAACTGCTAGTT ATTAGAACGAAAGGTACCATTGCTGGTCAATATAGAGTTTATAGCGAAGAAGGTGCTAAC AAAAGTGGTTTAGCCTGGCCTTCAGCCTTTAAGGTACAGTTGCAACTACCTGATAATGAA GTAGCTCAAATATCTGATTACTATCCAAGAAATTCGATTGATACAAAAGAGTATATGAGT ACTTTAACTTATGGATTCAACGGTAATGTTACTGGTGATGATACAGGAAAAATTGGCGGC CTTATTGGTGCAAATGTTTCGATTGGTCATACACTGAAATATGTTCAACCTGATTTCAAA ACAATTTTAGAGAGCCCAACTGATAAAAAAGTAGGCTGGAAAGTGATATTTAACAATATG GTGAATCAAAATTGGGGACCATATGATAGAGATTCTTGGAACCCGGTATATGGCAATCAA CTTTTCATGAAAACTAGAAATGGTTCTATGAAAGCAGCAGAGAACTTCCTTGATCCTAAC AAAGCAAGTTCTCTATTATCTTCAGGGTTTTCACCAGACTTCGCTACAGTTATTACTATG GATAGAAAAGCATCCAAACAACAAACAAATATAGATGTAATATACGAACGAGTTCGTGAT GACTACCAATTGCATTGGACTTCAACAAATTGGAAAGGTACCAATACTAAAGATAAATGG ACAGATCGTTCTTCAGAAAGATATAAAATCGATTGGGAAAAAGAAGAAATGACAAATTAA >1_2 speH ATGAACAATAACATCACGAAAAAAATTATTTTATCAACAACATTGTTACTATTAGGTACA GCATTTACACAATTTCCTAATACACCTATCAATTCTTCATCTGAAGCGAAAGCTTATTAT ATAAATCAAAACGAAACTAACGTTAATGAGTTAACTAAATATTACTCGCAAAAATATTTA ACCTTCTCTAACAGTACGTTATGGCAAAAAGATAACGGTACGATTCATGCAACGTTGTTA CAGTTTTCTTGGTATAGTCATATTCAAGTTTATGGACCTGAAAGTTGGGGCAATATCAAC CAATTAAGAAATAAAAGCGTTGATATTTTTGGCATAAAAGACCAAGAAACCATTGATTCT TTTGCATTATCTCAAGAAACGTTTACTGGTGGTGTTACTCCTGCAGCAACATCTAACGAT AAACACTATAAACTGAATGTAACATATAAAGATAAAGCAGAAACGTTTACTGGCGGATTT CCAGTTTATGAAGGCAATAAGCCTGTTTTAACTTTAAAAGAATTAGATTTTCGTATTCGT CAAACATTAATTAAAAGTAAAAAATTATATAATAATTCTTATAATAAAGGACAAATTAAA ATAACAGGTACAGACAATAACTACACAATAGATTTAAGTAAAAGGTTGCCATCAACTGAT GCAAATAGATATGTTAAAAAACCTCAAAATGCAAAAATTGAAGTTATCCTCGAAAAATCA AACTAA >1_3 argF ATGAAAAATTTACGAAACAGAAGTTTTTTAACTTTATTAGACTTTTCACGACAAGAGGTA GAATTCTTATTAACACTCTCCGAGGATTTAAAACGTGCTAAATATATTGGCACTGAAAAG CCTATGTTAAAAAATAAAAATATTGCACTGTTATTTGAAAAAGATTCTACAAGAACGCGA TGTGCATTTGAAGTTGCAGCGCATGATCAAGGTGCAAATGTAACTTATTTAGGCCCAACT GGATCACAAATGGGTAAAAAAGAAACAACTAAAGATACTGCACGTGTGCTTGGTGGAATG TATGATGGCATTGAATACCGTGGTTTTTCACAAAGAACAGTAGAAACTTTAGCTGAAAAT TCAGGCGTACCAGTGTGGAATGGTTTAACTGATGAAGATCATCCTACTCAAGTTCTTGCT GATTTCTTAACAGCAAAAGAAGTCTTAAAAAAAGATTATGCAGATATTAACTTTACATAT GTTGGAGATGGTCGTAATAACGTTGCAAATGCATTAATGCAAGGTGCTGCCATTATGGGT ATGAACTTCCATTTAGTTTGTCCAAAAGAATTAAATCCAACAGATGAATTATTAAATCGC TGTAAAAATATTGCCGCTGAAAATGGTGGCAACATATTAATCACAGATGATATTGACCAA GGTGTAAAAGGTTCGGATGTAATTTACACTGATGTTTGGGTATCAATGGGTGAACCTGAT GAAGTATGGAAAGAACGACTTGAATTATTGAAACCATATCAAGTAAATAAAGAAATGATG GATAAAACTGGTAATCCAAATGTTATTTTTGAGCATTGCTTACCATCTTTCCATAATGCT GATACGAAAATTGGTCAACAAATTTTTGAAAAATATGGTATTCGAGAAATGGAAGTTACA GATGAAGTATTCGAAAGTAAAGCTTCAGTTGTATTCCAAGAAGCTGAGAACAGAATGCAT ACAATCAAAGCAGTCATGGTTGCTACATTGGGTGAATTTTAA >1_6 group_6 ATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAACAACATGATAGT GTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTTTACTAGGTAAA TTATTTGGATTCTAA >2_7 group_7 ATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAACAACATGATAGT GTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTTTACTAGGTAAA TTATTTGGATTCTAA >3_5 yfnB TTGGGATATAAAAATATTTTGATAGACTTTGATGATACAATTGTTGATTTTTATGATGCA GAAGAATGGGCGTTTCACTATATGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGAT TTTTTAACATTTAAAAAAATCAATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTA ACGAAGTCTGAAGTATTATCAGAACGATTTGTGAATTACTTCAAACATCATCAAATGGAA GTTGATGGGCATCGTGCAGATGTGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAA TACTTTGATCAAACATTAGAAACAATTGTCGAATTATCGAAAAGACATGATTTATATATT GTTACTAATGGTGTAACCGAAACGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAA TATATTAAAAAGATATTTATATCTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTT TTTAATTATGTTTTTAATGATATTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGA GATTCTTTAACATCTGACATTCTAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTT AATTTTAGAGGATTTGATCATAATCCAGGAATTATACCTGATTATGAAATTAATTCATGG AAACAACTAAATGATATTGTACGTTAA Roary-3.8.0/t/data/expected_gene_presence_and_absence.Rtab000066400000000000000000000002031304207556500235730ustar00rootroot00000000000000Gene query_1.fa query_2.fa query_3.fa hly 1 1 1 speH 1 1 0 argF 1 0 1 group_4 0 1 1 yfnB 0 0 1 group_6 1 0 0 group_7 0 1 0 Roary-3.8.0/t/data/expected_gff_set_difference_common_set_statistics.csv000066400000000000000000000011101304207556500266540ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","959","959","959","1_1","2_1","3_1" "speH","","hypothetical protein","2","2","1","","","","","","725","725","725","1_2","2_2","" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1001","1001","1001","1_3","","3_3" Roary-3.8.0/t/data/expected_group_labels000066400000000000000000000003251304207556500202630ustar00rootroot00000000000000group_1: 1234#10_00001 1234#10_00002 group_2: 1234#10_00003 1234#10_00018 1234#10_00005 group_3: 1234#10_00005 1234#10_00005 group_4: 1234#10_00006 1234#10_00007 group_5: 1234#10_00016 group_6: 1234#10_00017Roary-3.8.0/t/data/expected_group_statitics.csv000066400000000000000000000017111304207556500216220ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1.fa","query_2.fa","query_3.fa" "hly","","Alpha-toxin","3","3","1","","","","","","959","959","959","1_1","2_1","3_1" "speH","","hypothetical protein","2","2","1","","","","","","725","725","725","1_2","2_2","" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1001","1001","1001","1_3","","3_3" "group_4","","","2","2","1","","","","","","","","","","2_4","3_4" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","686","686","686","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","134","134","134","1_6","","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","134","134","134","","2_7","" Roary-3.8.0/t/data/expected_group_statitics_missing_genes.csv000066400000000000000000000017741304207556500245450ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1.fa","query_2.fa","query_3.fa","query_4_missing_genes.fa" "hly","","Alpha-toxin","4","4","1","","","","","","959","959","959","1_1","2_1","3_1","4_1" "speH","","hypothetical protein","2","2","1","","","","","","725","725","725","1_2","2_2","","" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1001","1001","1001","1_3","","3_3","" "group_4","","","2","2","1","","","","","","","","","","2_4","3_4","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","686","686","686","","","3_5","" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","134","134","134","1_6","","","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","134","134","134","","2_7","","" Roary-3.8.0/t/data/expected_group_statitics_verbose.csv000066400000000000000000000043631304207556500233550ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1.fa","query_2.fa","query_3.fa","Inference" "hly","","Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein","3","3","1","","","","","","959","959","959","1_1","2_1","3_1","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6" "speH","","hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain","2","2","1","","","","","","725","725","725","1_2","2_2","","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11" "argF","","Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain","2","2","1","","","","","","1001","1001","1001","1_3","","3_3","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1" "group_4","","","2","2","1","","","","","","","","","","2_4","3_4", "yfnB","","Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase","1","1","1","","","","","","686","686","686","","","3_5","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1" "group_6","","Gonococcal growth inhibitor III,Staphylococcus haemolytic protein","1","1","1","","","","","","134","134","134","1_6","","","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5" "group_7","","Gonococcal growth inhibitor III,Staphylococcus haemolytic protein","1","1","1","","","","","","134","134","134","","2_7","","ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5" Roary-3.8.0/t/data/expected_inflated_results000066400000000000000000000005231304207556500211540ustar00rootroot000000000000006259_8#9_01142 6631_2#11_00851 6631_4#5_01901 6664_1#21_00211 6259_8#13_01077 6630_4#9_00008 6631_1#23_00379 6631_2#7_00715 6631_5#1_00087 6649_8#10_00838 6664_1#13_00087 6259_5#1_00688 6259_5#8_00815 6259_7#7_02078 6259_7#8_01884 6631_2#22_01965 6631_5#24_01032 6593_5#13_00457 6630_1#9_00031 6630_3#1_00008 6630_3#2_00088 6631_1#4_00087 Roary-3.8.0/t/data/expected_intersection_of_groups.gg000066400000000000000000000000251304207556500227670ustar00rootroot00000000000000group_1: 1_1 2_1 3_1 Roary-3.8.0/t/data/expected_intersection_of_groups_core0.66.gg000066400000000000000000000001101304207556500243040ustar00rootroot00000000000000group_1: 1_1 2_1 3_1 group_3: 1_3 3_3 group_4: 2_4 3_4 group_2: 1_2 2_2 Roary-3.8.0/t/data/expected_intersection_of_groups_paralogs.gg000066400000000000000000000000521304207556500246570ustar00rootroot00000000000000group_3: 1_3 2_4 3_3 group_1: 1_1 2_1 3_1 Roary-3.8.0/t/data/expected_mafft_input.fa.aln000066400000000000000000000073771304207556500212750ustar00rootroot00000000000000>1111#5_04506 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------atggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct attgataataaagttcaaccgcttatcaggcgttga >1234_8#75_04759 atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg ctggattctttccggcgggatagtgctttttatacctggttgtatcgtattgcggtcaat accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct attgataataaagttcaaccgcttatcaggcgttga >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_DT104_v1_02853 atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac ttaatgttttcagaagaactgagacagatagttttccgaactattgagtccctcccggaa gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct attgataataaagttcaaccgcttatcaggcgttga >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_SL1344_v2_02736 atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa gatttacgtatggcaatcaccttacgggagctggatggcctgagctgtgaagagatagcg gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct attgataataaagttcaaccgcttatcaggcgttga >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_D23580_v1_02783 atgagcgagcagttaacggaccaggtcctggttgaacgggtccagaagggagatcagaaa gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct attgataataaagttcaaccgcttatcaggcgttga >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_DT2_v1_02741 atgagcgagcagttaacggac---gtcctggttgaacgggtccagaagggagatcagaaa gcctttaacttactggtagtgcgctaccagcataaagtggcgagtctggtttcccgctat gtgccatcgggcgacgttcccgatgtcgtacaggaatcatttattaaggcctatcgcgcg ctggattctttccggggggatagtgctttttatacctggttgtatcgtattgcggtcaat accgcgaagaactacctggttgcgcaggggcgtcgtccgccttccagtgatgtagacgcg attgaagcagaaaactttgaaagcggcggcgcgctgaaagaaatttcgaaccctgagaac ttaatgttgtcagaagaactgagacagatagttttccgaactattgagtccctcccggaa gatttacgtatggcaatcaccttacgggagctggatggcctgagctatgaagagatagcg gctatcatggattgtccggtggggacggtgcgttcacgtatcttccgggcgcgggaagct attgataataaagttcaaccgcttatcaggcgttga Roary-3.8.0/t/data/expected_mafft_real_data_core_gene_alignment.aln000066400000000000000000004021061304207556500255160ustar00rootroot00000000000000>real_data_1 ATGAAAAAATCATTACTCGCTGTTGCTGTGGCAGGGGCTGTTTTGTTGTCATCCGCCGTA CAGGCGCAGACAACGCCGGAAGGTTATCAATTACAACAGGTGCTGATGATGAGCCGCCAT AATCTGCGGGCGCCGCTGGCGAATAATGGCAACGTACTGGCGCAGTCGACGCCGAACGCC TGGCCGGCGTGGGACGTTCCCGGCGGGCAACTGACGACGAAAGGCGGCGTGCTGGAAGTC TATATGGGACACTACACACGTGAATGGCTGGTCGCGCAGGGGCTGATACCGTCGGGAGAA TGTCCGGCGCCCGACACGGTATATGCCTATGCGAATAGTTTGCAGCGCACCGTCGCCACC GCGCAATTTTTCATTACCAGCGCTTTCCCCGGCTGTGATATTCCTGTTCATCATCAGGAA AAAATGGGCACTATGGACCCTACCTTCAATCCGGTGATTACCGATGATTCCGCCGCGTTC CGGCAACAGGCCGTACAGGCGATGGAAAAGGCGCGTAGTCAGCTACATCTTGATGAGAGT TATAAACTGCTTGAGCAGATAACGCATTATCAGGACTCGCCGTCCTGCAAAGAGAAGCAT CAGTGTTCGCTAATCGACGCGAAAGATACCTTCAGCGCGAACTATCAGCAAGAGCCTGGC GTGCAGGGGCCGCTGAAAGTAGGGAACTCGCTGGTGGATGCGTTTACCCTGCAATATTAC GAAGGCTTTCCGATGGATCAGGTCGCTTGGGGCGGGATCCACACCGATCGGCAGTGGAAG GTGCTGTCAAAACTGAAAAACGGCTACCAGGACAGCCTGTTTACCTCACCCACGGTGGCG CGCAATGTCGCTGCGCCGCTGGTAAAATATATCGATAAGGTGCTGGTTGCCGAGCGCGTT AGCGCGCCGAAGGTTACCGTGCTGGTGGGGCATGATTCCAATATCGCGTCGCTGCTGACG GCGCTGGATTTTAAACCCTATCAGCTCCATGACCAGTATGAGAGAACGCCGATTGGTGGT CAGCTTGTCTTCCAACGCTGGCATGACGGTAACGCTAACCGGGATTTGATGAAAATCGAG TATGTCTACCAGAGCGCCCGGCAGTTACGTAATGCGGAAGCGTTAACGCTCAAATCGCCT GCGCAAAGGGTAACGCTGGAACTGAAAGGATGTCCGGTGGATGCGAACGGCTTCTGTCCG CTGGATAAGTTCGATAACGTCATGAACACTGCTGCAAAATAGATGGAAAAGAATAATGAA GTCATTCAGACCCATCCGCTTGTAGGATGGGACATCAGCACCGTCGATAGCTATGATGCG CTGATGCTGCGTTTACACTACCAGACCCCAAATCGTCCGGAACCGGAAGGGACTGAAGTT GGTCAAACGCTCTGGTTAACGACAGATGTAGCCAGGCAATTTATTTCAATATTAGAAGCC GGCATCGCCAAAATAGAATCAGGCGATTACCAGGAAAACGAGTATCGTCACCATTAGATG GAACTTAAGGATTATTACGCCATTATGGGCGTGAAACCGACGGACGATCTCAAGACGATT AAGACCGCCTATCGCCGACTGGCCCGCAAGTACCATCCAGATGTCAGCAAAGAACCCGAT GCCGAAGCCCGTTTCAAAGAGGTTGCTGAAGCATGGGAAGTGCTGAGTGATGAGCAACGG CGCGCCGAGTATGACCAGTTATGGCAACACCGTAACGATCCACAATTTAATCGCCAGTTC CAGCAACACGAAGGCCAGCCGTATAACGCCGAAGATTTTGATGATATTTTCTCGTCTATT TTTGGTCAGCACGGTCGTCATTCGCACCACCGCCACGCCGCACGCGGTCATGATATCGAA ATTGAAGTGGCGGTATTCCTGGAAGAAACGCTGGAAGAGCACCAGCGTACGATTAGCTAT TCCGTCCCCGTTTATAACGCGTTCGGCCTGGTGGAGCGGGAAATTCCCAAAACATTGAAT GTGAAAATCCCGGCTGGCGTCAGCAACGGGCAACGAATCAGACTGAAAGGCCAGGGCACG CCGGGGGAAAACGGCGGACCTAATGGCGATTTATGGCTCGTTATCCATATTGCCCCGCAT CCGCTCTTTGATATCGTCAATCAGGATCTGGAAGTCGTCCTTCCGCTTGCCCCATGGGAG GCGGCGCTCGGCGCTAAGGTGTCTGTGCCAACGCTTAAAGAGCGTATTTTGCTGACCATT CCCCCCGGCAGCCAGGCAGGTCAGCGGCTGCGTATCAAAGGAAAAGGATTAGCCAGTAAA AAGCACACTGGCGATCTCTATGCCATCATCAAAATCGTTATGCCGCCGAAACCTGACGAG AAAACAGCTGCCCTGTGGCAACAACTGGCGGACGCGCAGTCGTCCTTTGACCCACGCCAG CAATGGGGGAAAGCATAAATGGCTAACATCACTGTCACCTTTACCATCACCGAATTTTGT TTGCACACCGGCGTGACGGAAGAGGAGCTAAACGAAATCGTCGGACTTGGCGTAATTGAG CCTTACGAAGACGATAACGCCGACTGGCAATTCGACGATCGCGCAGCGAGCGTGGTACAA CGCGCGCTACGCTTACGCGAGGAGCTGGCGCTCGACTGGCCAGGGATCGCGGTCGCGTTA ACGCTGCTGGAAGAGAATTCACGGCTGCGCGAAGAAAACCGGTTACTGCTGCAACGCCTT TCTCGCTTTATCTCGCATCCCTAAATGTCATCTTGTTGGAGATTTACGGATTCGCTAACA AGCCTATGGCATACTGCGTTGATGAAGATTTTATTGATTGAAGATAACCAGAAAACCATT GAGTGGGTACGTCAGGGACTCACGGAGGCAGGCTATGTGGTTGATTATGCCTGTGATGGA CGAGACGGATTACACCTAGCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATG CTGCCGGGGCTTGATGGATGGCAGGTTTTACGCGCGTTGCGCACTGCATATCAGCCCCCT GTTATTTGCCTGACGGCGCGCGACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGC GCTAATGATTACCTTGTTAAGCCTTTTTCCTTCGCCGAACTGCTGGCCCGGGTGAGAGCT CAACTCAGACAGCATGTCCCGGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGAT GCCACAAAGCAATCGGTGTTACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTC CTGCTCCTCTGGTTACTGGCGTCCCGGGCAGGGGAAATCGTGCCCCGAACCGCGATCGCC AGCGAAGTTTGGGGAATTAACTTTGATAGTGAAACCAACACCGTTGATGTCGCGATTCGT CGGCTGCGCGCCAAAGTAGACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCAGGGG ATGGGTTATCGATTACAGGCGGAAACGTCGCAGAATGGTTAAATGAAAAACAAATTGTTA TTTATGATGTTGACAATACTGGGTGCGCCTGGGATTGCAACCGCGACAAATTATGATCTG GCTCGTTCAGAGTATAATTTTGCGGTAAATGAATTAAGCAAGTCTTCATTTAATCAGGCG GCCATTATTGGTCAAGTCGGCACGGATAATAGTGCCAGAGTACGCCAGGAAGGATCAAAA CTATTGTCCGTTATTTCACAAGAAGGAGAAAATAATCGGGCGAAAGTCGACCAGGCAGGG AATTATAACTTTGCGTATATTGAGCAAACGGGCAATGCCAACGATGCCAGTATATCGCAA AGCGCTTACGGTAATAGTGCGGCTATTATCCAGAAAGGTTCTGGAAATAAGGCCAATATT ACCCAGTACGGTACGCAGAAAACAGCAGTTGTAGTGCAGAAACAGTCGCATATGGCTATT CGCGTCACCCAACGCTAAATGCATACTTTATTGCTCCTTGCCGCACTTTCAAATCAGATT ACGTTTACCACGACTCAGCAAGGCGATATTTACACGGTGATCCCTCAGGTCACATTAAAC GAACCCTGCGTCTGTCTGGTGCAAATTCTCTCTGTGCGCGACGGCGTCGGGGGACAAAGC CATACACAGCAAAAACAAACGCTATCTTTACCTGCTAATCAACCGATTGAGTTGTCTCGT CTTAGTGTAAATATATCTTCAGAGGACTCGGTTAAAATTATTGTTACTGTTTCGGACGGA CAATCACTGCATTTATCACAACAATGGCCGCCTTCTGCACAGTAGATGTTTAATGAAGTC CATAGTAGTCATGGTCACACACTATTGTTGATCACAAAGCCATCTCTGCAAGCTACGGCA TTATTGCAACATTTAAAGCAATCGCTGGCCATAACCGGAAAACTGCATAATATTCAACGT TCTCTGGAAGATATCTCAGCCGGTTGCATTGTTTTAATGGATATGATGGAAGCGGATAAG AAGCTTATCCACTATTGGCAGGATAATTTAAGCCGCAAAAACAATAATATAAAAACATTA TTGTTAAATACCCCTGACGATTATCCCTACCGTGAAATTGAAAACTGGCCTCATATTAAC GGCGTGTTTTACGCCACTGAAGACCAGGAACACGTGGTCAGCGGATTACAGGGTATTCTG CGGGGCGAATGCTATTTTTCACAAAAATTAGCCAGTTACCTGATTACACACTCAGGAAAT TACCGCTACAACAGCACCGAGTCCGCATTACTCACTCATCGCGAAAAAGAGATCCTCAAT AAGTTACGTATTGGTGCCTCTAATAATGAAATCGCCAGGTCGCTATTTATCAGCGAGAAT ACGGTTAAGACACATCTTTATAATCTTTTCAAAAAGATAGCTGTCAAAAATCGCACCCAG GCAGTTTCATGAATGAAACGCTATCTGACCTGGATTGTAGCAGCAGAGTTACTGTTCGCT ACCGGAAACCTGCATGCCAATGAAGTTGAAGTCGAGGTTCCCGGATTGTTAACCGACCAT ACCGTCTCTTCGATAGGACATGAATTCTATCGTGCATTCAGCGACAAATGGGAAAGCGAA TACACCGGCAATCTGACCATTAATGAAAGACCCAGTGCGCGTTGGGGAAGCTGGATCACC ATAACGGTAAATCAGGACGTTATTTTCCAGACCTTTTTATTTCCAATGAAAAGAGACTTC GAGAAAACCGTCGTCTTCGCATTAGCGCAAACAGAGGAAGCATTAAATCGCCGACAAATA GATCAAACGCTATTAAGTACGAGTGATTTAGCGCGTGATGAATTCTAAATGCGTGTTAAA CATGCAGTAGTGCTGCTCATGCTTTTTTCGCCATTAACCTGGGCTGGAAATATGACGTTC CAGTTCCGTAATCCTAACTTTGGTGGAAACCCCAATAACGGTTCCTTTTTATTGAATAGC GCCCAGGCGCAAAATTCATATAAAGACCCCGCTTATGATAACGATTTTGGTATCGAGACC CCCTCAGCGTTGGATAACTTTACGCAGGCTATTCAATCGCAAATTCTGGGCGGCTTGTTG ACCAATATTAATACCGGAAAACCAGGACGTATGGTGACCAATGATTTTATTATCGATATC GCTAATCGCGACGGACAGCTCCAGCTCAACGTCACGGACAGAAAAACGGGAAGAACCTCG ACCATCGAAGTGTCAGGTTTACAAACTCAGTCAACCGATTTTTAAATGCCGCGCTTACTT ATTTTGGTTGCCGTTTTATTGTTGAGCGGATGCTTAACTGCCCCGCCGAAACAAGCTGCG AAACCGACATTAATGCCCCGCGCACAAAGTTACAAAGATTTGACGCACTTACCTGCTCCC ACCGGTAAGATCTTTGTTTCGGTATATAACATTCAGGATGAAACGGGCCAATTTAAACCT TACCCGGCAAGTAACTTTTCCACGGCTGTGCCGCAGAGCGCCACCGCTATGTTGGTCACC GCGCTGAAAGATTCGCGCTGGTTTATCCCACTAGAACGACAAGGCTTACAGAATCTTTTG AATGAACGGAAAATTATTCGCGCAGCCCAGGAAAACGGCACCGTGGCGATGAATAACCGT ATCCCGCTTCAGTCGTTGACGGCGGCAAATATTATGGTGGAAGGTTCTATTATTGGTTAT GAAAGTAACGTCAAATCCGGCGGGGTCGGCGCAAGATATTTCGGTATTGGCGCCGATACG CAGTATCAGCTGGATCAGATTGCTGTCAACCTGCGCGTGGTTAACGTCAGTACGGGCGAG ATCCTTTCTTCGGTGAACACCAGTAAAACGATCCTTTCCTATGAAGTACAGGCAGGCGTG TTCCGTTTTATTGATTACCAGCGCTTACTGGAAGGCGAAATCGGCTATACCTCGAACGAA CCGGTGATGCTGTGTCTGATGTCAGCCATTGAAACCGGCGTTATCTTCCTCATTAATGAT GGTATCGATCGCGGACTGTGGGATTTGCAGAATAAAGCGGACAGGCAAAATGATATTCTG GTGAAATACCGTGAGCTGTCAGTACCGCCAGAATCCTGAATGTCTATTGCCGTAAATATG AATGACCCGACCAACACGGGCGTCAAAACGACGACCGGCAGCGGGTCGATGACCGGAAGC AACGCTGCCGATCTGCAAAGCAGTTTCCTGACCTTACTGGTCGCGCAATTGAAGAACCAG GACCCGACTAACCCATTACAAAATAATGAGTTAACGACACAGTTGGCGCAAATCAGTACC GTGAGCGGCATTGAAAAACTGAATACGACGCTGGGGGCTATTTCCGGGCAAATCGATAAT AGTCAGTCCCTACAGGCGACCACGCTGATTGGACATGGCGTTATGGTGCCTGGCACCACA ATTCTGGCGGGTAAAGGCGCGGAAGAAGGGGCCGTGACGTCCACGACGCCGTTTGGCGTG GAATTGCAACAGCCTGCGGACAAAGTGACGGCAACCATTACCGATAAAGATGGCCGGGTG GTACGGACGCTGGAGATCGGTGAGTTGCGAGCCGGGGTACACACCTTTACCTGGGATGGT AAGCAAACGGACGGAACAACGGTACCGAATGGTTCTTACAACATTGCGATTACCGCCAGC AATGGCGGGACGCAACTGGTGGCGCAGCCGCTGCAATTCGCTCTGGTACAGGGCGTGACG AAGGGCAGTAACGGCAACCTGTTGGATCTGGGTACCTACGGCACCACCACACTCGACGAA GTTCGGCAAATAATCTAAATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTGCGGCC ACCAACCTTGATGTTATCGGTAATAACATCGCCAACTCCGCCACCTATGGCTTTAAGTCC GGTACGGCATCATTTGCCGATATGTTCGCCGGTTCCAAAGTGGGGTTGGGCGTAAAAGTG GCGGGGATTACCCAGGATTTTACCGACGGTACGACAACGAACACCGGGCGCGGGCTGGAT GTCGCGATTAGCCAGAACGGTTTTTTCCGCCTGGTAGACAGCAACGGTTCCGTGTTCTAT AGCCGCAACGGCCAGTTCAAACTGGACGAGAACCGTAACCTGGTCAATATGCAGGGGATG CAGTTGACCGGCTATCCGGCCACCGGTACGCCGCCGACCATTCAGCAGGGGGCGAATCCT GCGCCGATCACCATTCCGAACACGCTGATGGCGGCGAAATCGACCACCACCGCGTCAATG CAGATCAACCTGAACTCAACGGACCCTGTACCGTCTAAAACGCCCTTTAGCGTGAGTGAT GCGGATTCGTATAACAAAAAAGGCACCGTCACCGTTTATGACAGCCAGGGTAATGCCCAT GACATGAACGTCTATTTTGTGAAAACCAAAGATAATGAATGGGCTGTGTACACCCATGAC AGCAGCGATCCTGCAGCCACTGCGCCAACAACGGCGTCCACTACGCTGAAATTCAATGAA AACGGGATTCTGGAGTCTGGCGGTACGGTGAACATCACCACCGGTACGATTAATGGCGCG ACAGCGGCCACCTTCTCCCTCAGCTTCCTTAACTCCATGCAGCAGAACACCGGGGCTAAT AACATCGTCGCCACCAATCAAAACGGCTATAAGCCTGGCGACCTGGTGAGCTACCAGATT AACAATGATGGCACCGTGGTTGGCAACTACTCCAACGAGCAGGAGCAGGTGCTGGGGCAG ATTGTGCTGGCTAACTTCGCCAACAACGAAGGTCTGGCATCCCAGGGCGATAACGTCTGG GCGGCGACGCAGGCCTCCGGGGTAGCGCTGCTGGGGACTGCCGGTTCCGGCAACTTCGGT AAGCTGACGAACGGCGCGCTGGAAGCCTCTAACGTGGATTTGAGTAAAGAGCTGGTGAAT ATGATCGTCGCGCAGCGTAACTACCAGTCGAATGCGCAGACCATCAAAACCCAGGACCAG ATCCTCAATACGCTGGTTAACCTGCGCTAAATGGATCACGCAATTTATACCGCCATGGGG GCGGCCAGCCAGACGCTTAACCAGCAGGCGGTAACGGCCAGCAACCTGGCTAATGCCTCA ACGCCGGGCTTTCGCGCGCAGCTTAACGCGCTACGCGCGGTGCCCGTTGATGGCCTCTCT TTAGCGACGCGCACGTTGGTTACGGCGTCGACGCCGGGGGCGGATATGACCCAGGGTCAG TTGGACTACACTTCCCGCCCGCTGGATGTTGCGTTACAGCAGGACGGCTGGCTGGTGGTG CAAGCGGCGGATGGCGCTGAAGGATATACCCGTAACGGGAATATCCAGGTGGGCCCGACC GGGCAGTTAACCATTCAGGGACATCCGGTTATCGGCGAAGGCGGCCCGATTACCGTTCCG GAAGGGTCGGAAATCACCATTGCGGCAGACGGCACGATCTCCGCGCTCAATCCCGGCGAC CCGCCAAACACGGTGGCGCCCGTTGGGCGGCTGAAGCTGGTCAAAGCGGAAGGCAATGAG GTGCAGCGGAGCGATGACGGTTTATTCCGCCTTACCGCCGAGGCACAGGCTGAACGCGGG GCGGTACTGGCCGCCGACCCGTCAATTCGCATTATGTCGGGCGTGCTGGAGGGCAGTAAC GTCAAGCCGGTTGAAGCCATGACCGACATGATCGCCAACGCACGTCGTTTTGAAATGCAG ATGAAGGTTATCACCAGCGTAGATGAGAACGAAGGGCGAGCTAACCAACTGCTGTCGATG AGTTAAATGATCAGTTCATTATGGATCGCCAAAACCGGTCTGGACGCGCAGCAAACCAAT ATGGATGTGATTGCCAATAACCTGGCAAACGTCAGCACCAATGGTTTTAAGCGTCAGCGC GCGGTATTTGAAGATCTGTTGTATCAGACCATCCGCCAGCCGGGCGCGCAGTCGTCCGAG CAGACGACGCTGCCTTCCGGGCTGCAAATCGGTACCGGCGTGCGTCCGGTCGCCACGGAG CGCCTGCACAGTCAGGGGAACCTGTCGCAGACCAACAACAGTAAAGATGTGGCGATTAAA GGGCAGGGCTTTTTCCAGGTCATGCTGCCGGACGGTACGTCTGCCTATACCCGCGACGGC TCTTTCCAGGTGGATCAGAATGGTCAACTGGTGACGGCGGGCGGTTTTCAGGTGCAGCCG GCAATCACCATTCCGGCCAACGCGTTAAGCATCACGATTGGCCGCGACGGCGTGGTCAGC GTTACCCAGCAAGGGCAGGCCGCGCCGGTTCAGGTCGGGCAGCTTAACCTGACCACCTTT ATGAACGACACCGGTCTGGAAAGCATCGGCGAGAACCTCTATATCGAAACGCAATCGTCC GGCGCGCCGAACGAAAGCACGCCGGGGCTCAACGGCGCGGGGTTGTTGTATCAAGGGTAT GTCGAAACGTCGAACGTTAACGTGGCGGAAGAGCTGGTGAACATGATTCAGGTTCAACGC GCCTATGAAATTAACAGTAAAGCAGTATCGACGACCGATCAGATGCTGCAGAAACTGACG CAACTCTAAATGGCCCTGATGGTCGCGACGCTGACAGGATGCGCCTGGATACCCGCTAAA CCGCTCGTGCAGGGGGCGACCACGGCGCAGCCGATACCTGGCCCGGTACCGGTGGCGAAT GGCTCCATATTTCAGTCTGCGCAGCCGATTAATTATGGCTATCAGCCGCTTTTTGAAGAT CGTCGACCGCGTAATATCGGCGATACGCTCACGATTGTGTTACAGGAAAACGTCAGCGCC AGTAAAAGCTCGTCGGCAAATGCCAGCCGCGACGGCAAAACCAGCTTTGGTTTTGATACG GTACCGCGTTATCTGCAGGGATTATTCGGTAATTCCCGCGCGGATATGGAGGCCTCCGGC GGCAACTCTTTTAATGGTAAAGGCGGCGCGAATGCCAGCAATACCTTTAGCGGCACGCTG ACCGTGACCGTCGATCAGGTTCTGGCCAATGGCAATTTACACGTCGTGGGGGAAAAACAG ATCGCGATTAATCAGGGAACGGAATTCATCCGCTTCTCCGGCGTGGTAAATCCACGCACC ATCAGCGGTAGCAACTCTGTTCCCTCGACACAGGTGGCGGATGCGCGGATTGAATATGTC GGGAACGGCTATATTAACGAAGCGCAAAATATGGGCTGGCTGCAACGTTTCTTCCTTAAT TTGTCGCCGATGTAAGTGTTTAAAGCTCTTGCAGGAATCGTTCTGGCACTGGTTGCCACT CTGGCGCACGCCGAGCGTATCCGGGATCTGACCAGTGTCCAGGGAGTACGGGAAAACTCG CTGATCGGCTACGGGCTGGTGGTCGGGCTGGACGGTACGGGCGACCAGACGACCCAGACG CCATTTACCACCCAGACGCTGAATAACATGCTGTCACAACTGGGGATTACGGTCCCCACC GGCACCAATATGCAGTTGAAAAACGTGGCGGCGGTGATGGTGACGGCGTCGTATCCGCCT TTTGCGCGACAGGGACAAACGATCGATGTCGTCGTTTCCTCAATGGGGAACGCTAAAAGT CTGCGTGGCGGGACGTTATTAATGACGCCGTTAAAAGGGGTGGACAGCCAGGTGTATGCT CTGGCGCAGGGCAATATTCTGGTCGGCGGCGCGGGCGCTTCCGCAGGCGGCAGTAGCGTG CAGGTTAACCAGCTTAATGGCGGGCGCATCACTAATGGCGCGATTATCGAACGCGAGTTG CCGACTCAGTTCGGCGCTGGCAACACCATTAATCTGCAATTGAACGACGAAGATTTTACG ATGGCGCAGCAAATTACCGACGCCATCAACCGCGCCCGCGGTTACGGCAGCGCCACTGCG CTTGATGCGCGAACGGTACAGGTACGCGTGCCCAGCGGCAACAGCTCGCAGGTGCGTTTT CTGGCGGACATTCAAAATATGGAAGTCAACGTGACGCCGCAGGATGCAAAAGTCGTGATC AACTCGCGTACCGGTTCGGTGGTCATGAATCGGGAAGTCACGCTGGATAGCTGCGCTGTG GCGCAGGGCAATTTGTCAGTGACAGTCAATCGCCAACTCAACGTCAACCAGCCGAATACG CCATTTGGCGGCGGGCAGACCGTGGTGACGCCACAGACTCAGATAGATTTGCGTCAGAGC GGCGGATCGCTACAGAGCGTGCGTTCCAGCGCCAATCTGAACAGCGTAGTGCGCGCGCTG AATGCGCTTGGCGCGACGCCGATGGATCTGATGTCGATTTTGCAGTCCATGCAGAGCGCG GGCTGTCTACGCGCCAAACTGGAAATCATCTGAATGATCGGAGACGGTAAATTGCTGGCC AGCGCGGCCTGGGATGCGCAATCTCTGAACGAACTGAAAGCGAAAGCGGGCCAGGACCCG GCGGCGAATATCCGTCCTGTGGCCCGTCAGGTGGAAGGGATGTTTGTGCAGATGATGCTG AAAAGTATGCGCGAGGCTTTACCCAAAGATGGTTTATTCAGCAGCGATCAGACGCGTCTG TATACCAGCATGTATGACCAGCAGATCGCCCAGCAGATGACCGCCGGTAAGGGATTGGGG CTGGCGGATATGATGGTTAAACAGATGACGGGCGGGCAGACGATGCCTGCAGATGATGCG CCGCAAGTACCGCTTAAATTCTCCCTGGAGACGGTAAACAGCTATCAAAATCAGGCGCTG ACCCAACTGGTGCGCAAAGCCATACCGAAAACGCCGGACAGCAGCGATGCGCCGCTCTCC GGCGACAGTAAAGACTTTCTGGCCCGGCTTTCGCTCCCGGCGAGGCTGGCCAGCGAACAA AGCGGGGTGCCGCATCATCTGATTCTGGCGCAGGCGGCGCTGGAGTCCGGCTGGGGGCAG CGGCAAATCCTGCGGGAGAATGGCGAACCCAGCTATAACGTATTTGGCGTGAAAGCGACC GCCAGTTGGAAAGGGCCGGTGACGGAAATCACCACCACTGAATACGAAAATGGCGAAGCG AAAAAAGTGAAAGCGAAATTCCGCGTCTATAGCTCGTATCTGGAGGCGTTATCGGATTAT GTCGCGCTGTTAACGCGTAACCCACGCTACGCTGCCGTGACCACTGCCGCCACGGCAGAG CAGGGCGCAGTGGCTCTGCAAAACGCCGGATACGCCACTGACCCGAATTACGCGCGTAAA TTGGCCAGCATGATTCAGCAGTTGAAAGCGATGAGTGAAAAGGTCAGCAAAACCTACAGC GCGAATCTCGACAATCTCTTTTAAATGTCCAGCTTGATTAATCACGCCATGAGCGGACTT AACGCCGCGCAGGCCGCGTTAAATACGGTCAGTAATAACATCAACAATTATAACGTTGCG GGTTATACCCGGCAGACAACTATTCTGGCGCAGGCAAACAGTACGTTAGGGGCTGGCGGC TGGATAGGTAATGGCGTTTACGTTTCAGGCGTACAGCGCGAATATGATGCGTTTATCACT AATCAGCTACGCGGCGCGCAAAACCAGAGCAGCGGCTTAACCACGCGCTATGAACAAATG TCGAAAATCGACAACCTGCTGGCCGATAAATCCAGCTCACTGTCTGGCTCGCTGCAGAGT TTTTTTACCAGCCTGCAAACGTTAGTCAGTAATGCGGAAGATCCTGCGGCGCGTCAGGCG CTGATTGGTAAAGCGGAAGGGCTGGTAAACCAGTTCAAAACCACCGATCAGTATCTGCGC GATCAGGATAAACAGGTCAATATCGCGATTGGCTCCAGCGTGGCGCAAATCAACAATTAC GCGAAGCAGATAGCTAACCTGAACGATCAAATCTCCCGTATGACGGGCGTAGGCGCGGGC GCATCGCCGAACGACCTGCTCGATCAACGTGATCAGTTGGTTAGCGAGCTTAACAAGATC GTTGGCGTCGAGGTGAGTGTACAGGACGGCGGCACCTATAACCTGACGATGGCCAATGGC TATACGCTGGTGCAGGGGTCGACGGCGCGTCAGTTGGCGGCGGTTCCCTCCAGCGCCGAC CCGACGCGAACGACTGTCGCTTATGTCGATGAGGCCGCCGGTAACATCGAAATTCCGGAA AAGTTGCTGAACACCGGTTCGCTCGGCGGGCTACTGACGTTCCGTTCTCAGGATCTGGAT CAGACTCGTAATACGCTGGGCCAGTTGGCGTTGGCGTTTGCCGATGCGTTTAACGCGCAG CATACCAAAGGTTATGACGCCGACGGCAATAAAGGGAAAGACTTCTTTAGCATTGGCTCG CCGGTGGTATATAGCAACAGTAATAATGCCGATAAAACGGTATCGCTAACCGCTAAGGTG GTCGACAGCACGAAGGTTCAGGCGACGGATTATAAGATTGTTTTTGACGGTACAGACTGG CAGGTTACTCGCACTGCGGATAACACCACCTTCACGGCAACAAAAGATGCTGACGGAAAA CTGGAGATTGACGGTCTGAAAGTGACGGTAGGGACTGGCGCACAGAAAAACGACAGTTTT CTTCTCAAGCCGGTCAGCAATGCTATCGTCGACATGAACGTTAAAGTGACAAATGAAGCC GAGATTGCGATGGCGTCTGAGTCAAAACTCGATCCTGATGTGGATACCGGCGACAGCGAT AACCGCAATGGTCAGGCATTGCTGGACTTACAAAACAGCAATGTAGTGGGCGGCAACAAA ACCTTTAACGATGCTTACGCCACGTTGGTCAGCGATGTGGGTAACAAAACGTCAACGCTG AAAACCAGCAGCACCACGCAGGCGAATGTGGTTAAACAGCTTTATAAACAGCAACAGTCG GTTTCCGGCGTTAACCTCGACGAAGAGTACGGCAATTTGCAGCGTTATCAGCAGTATTAT CTGGCGAATGCGCAAGTATTGCAGACCGCGAATGCGCTGTTTGATGCGTTATTGAATATT CGCTAAATGCGTATCAGTACCCAGATGATGTACGAACAAAATATGAGCGGCATCACTAAT TCTCAGGCCGAATGGATGAAGCTGGGCGAGCAGATGTCTACCGGTAAGCGCGTTACCAAC CCATCTGACGATCCGATCGCCGCGTCGCAGGCGGTAGTACTCTTTCAGGCGCAGGCGCAG AATAGCCAGTACGCCCTGGCGCGTACGTTTGCCACCCAAAAAGTGTCGCTGGAAGAAAGC GTACTCAGTCAGGTGACGACGGCGATTCAAACCGCGCAGGAAAAAATCGTCTATGCCGGA AACGGCACGTTAAGCGACGATGACCGCGCGTCGCTGGCGACGGATTTACAGGGGATCCGC GATCAGCTGATGAACCTGGCAAACAGCACTGACGGCAATGGTCGCTATATCTTTGCCGGG TATAAAACGGAAGCGGCGCCATTCGACCAGGCGACAGGTGGTTATCATGGCGGCGAGAAA AGTGTTACCCAGCAGGTGGATTCCGCACGCACGATGGTAATTGGCCATACGGGAGCGCAA ATTTTTAATAGCATCACCAGCAATGCGGTGCCGGAACCGGATGGCTCGGACTCCGAAAAG AATCTGTTTGTCATGCTCGATACGGCAATTGCCGCGCTCAAGACCCCGGTGGAAGGCAAT GACGTGGAAAAAGAAAAAGCCGCTGCCGCCATTGATAAAACCAATCGCGGCTTAAAAAAT TCGCTTAATAACGTCCTGACCGTTCGTGCGGAACTGGGAACGCAACTGAGCGAACTCAGT ACGCTGGATTCACTGGGAAGCGACCGTGCGCTGGGACAGAAGCTACAGATGAGCAACCTG GTAGATGTGGACTGGAACTCGGTCATTTCCTCCTACGTCATGCAACAGGCGGCATTACAG GCGTCCTATAAAACGTTTACCGACATGCAGGGAATGTCGCTTTTCCAGTTGAACCGGTAA ATGGAGATAATTTTTTATCACCCGACATTTAACGCCGCCTGGTGGGTAAATGCGCTGGAG AAGGCTCTCCCACATGCGCGCGTTCGTGAATGGAAGGTCGGTGATAACAACCCCGCAGAC TATGCGCTTGTATGGCAGCCCCCGGTTGAAATGCTGGCCGGAAGACGCTTAAAAGCCGTC TTTGTGCTGGGCGCGGGGGTGGATGCAATTCTGAGTAAATTAAATGCGCATCCGGAAATG CTGGACGCCTCCATTCCTCTATTCCGTCTGGAAGATACCGGAATGGGCCTGCAAATGCAG GAGTATGCCGCCAGCCAGGTATTACACTGGTTCCGTCGTTTCGATGATTATCAGGCGCTG AAAAATCAGGCGCTATGGAAACCGTTGCCGGAATATACCCGCGAAGAGTTTAGCGTCGGT ATCATAGGCGCAGGGGTACTGGGCGCAAAAGTGGCAGAAAGTCTACAGGCGTGGGGGTTC CCGTTACGTTGCTGGAGTCGTAGCCGCAAATCCTGGCCTGGCGTGGAAAGTTATGTAGGG CGTGAAGAACTGCGCGCTTTCCTGAACCAGACGCGGGTGCTGATTAATCTGCTGCCGAAT ACGGCCCAAACGGTAGGAATTATTAATAGCGAATTGTTGGATCAATTGCCGGATGGCGCT TACGTGCTGAATCTCGCGCGCGGCGTTCATGTTCAGGAGGCGGATCTGCTGGCTGCGCTT GATAGCGGTAAGCTAAAAGGCGCGATGTTGGATGTCTTTAGCCAGGAACCGTTACCGCAG GAAAGTCCATTATGGCGCCATCCGCGAGTCGCCATGACGCCGCACATTGCGGCAGTCACC CGTCCGGCGGAAGCCATCGATTATATTAGCCGCACCATTACCCAGCTGGAGAAGGGAGAG CCGGTGACGGGGCAGGTGGATCGGGCGAGAGGATATTGAATGTCCGTAATCAAGAAAAAT ATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATCCATTCTGCGGTAGGGCAACAA ACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATTGTTGAGCCACTGTGCGATATT TCTACTCACGCCGAAAATATTGATTTAACCTGCCTACGCGAAGGTAAAAAGCAAATGCAC CGGATAGACCTTCGGCAGGCATCTGGATTACCGCAGGATATTCAGTCCATTGCGACGGTA CGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTGATGAATATTGAGTACCGTTAA ATGGCAAACCATCGTGGCGGTTCCGGTAATTTTGCGGAAGACCGCGAAAGAGCATCAGAA GCAGGTCGTAAAAGTGGTCAGCACAGCGGGGGCAATTTTAAGAATGACCCGCAGCGTGCA TCCGAAGCAGGCAAAAAAGGGGGCAAAAGCAGTAACCGTAATCGCTAGATGGTAATGTCC GCACCAGGACACATTGTTTACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGT GGTGGTCTTGTCATCTTAAAAGCTCTCATCATTTCCCTTACTGTCCATACCCATGACGCC ATATGTGGTGCGCGTAGCCGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAG GAAGCCAACCCTCAGATGTGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTAT ACCTACAACTCAAGGTGCTATCCATGGGAAGACAAAAAGCAGTGAATGAAACGAATTTTC CTTACCTGCGCGGCGTTGTTGTTCAGCAGTCAGGCGTTGGCCGATGAGTGTGCCAGCGCC AGTACGCAGCTGGAAATGAATCGCTGCGCCGCCGCGCAATACCAGGCGGCAGATAAAAAG CTGAACGAAACCTATCAAAGCGCGATTAAGCGTGCGCAACCGCCGCAGCGTGAGCTATTG CAAAAAGCGCAGGTGGCATGGATTGCCCTGCGCGACGCCGATTGCGCGCTGATTCGCTCA GGTACGGAGGGCGGCAGCGTTCAACCCATGATCGCCAGCCAGTGCCTGACCGATAAAACG AACGAACGCGAAGCGTTTTTAGCCTCGCTGCTGCAATGTGAAGAGGGTGATTTGAGCTGC CCACTGCCGCCAGCCGGTTAAGTGCGTATATTCGCGGTGAGCATAATGGTGATTACCCTG AGCGGCTGCGGCAGTATTATCAGCAGAACGATCCCCGGACAAGGACACGGCAACCAGTAT TACCCTGGCGTGCAGTGGGATATGCGTGATTCCGCATGGCGCTATATCACTATCCTCGAT CTGCCCTTCTCACTGATCTTCGATACACTGCTACTGCCGCTCGATATTCACCACGGGCCT TATGAGTAAATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGACGAA AGCATGGGCAGTAACGATGTGCATTATCAGTCGTTTGCTCGTATGGCGGATTTCTTTGGT CGTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTCTTGATACCGGG CAGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTGCTA ACGCCGCCCTCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTTCTG ACGGTACGCGAAGAGCTGGTTTGGCCGCTGCTGGAAGTGCTTTATCCCGGCACCAGAGAG GCCTTCGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACGAGCTGGCGGCG CTCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGCGAA CATACCTTGGTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAGCTG GACGATCATGCCGCAACCGGGATGCGCGGTGAACTGAAACTTTTTCAGCGCTTTACCCTG TTAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCTGTGAGTTGCAT ATTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAACGC CTGATTTTTGATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAATGCT GTCAACGAGATCGCCTGGCAATTAGGTTTTAAAGATCCGGCTTATTTCGCCCGTTTCTTT AATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTCCTTCTTTTCTC AACTAAATGGGACGCACACCGGATTACAAAGCCGCCTTTGGCTGCGCTCTGGGCGCTAAC CCAGCCTTCTACGGCCAGTTTGAGCAGAACGCCCGTAACTGGTACACCCGTATTCAGGAG ACCGGCCTGTACTTTAACCATGCAATCGTCAACCCGCCCATTGACCGCCACAAACCTGCC GACGAAGTGAAAGACGTCTATATCAAGCTGGAGAAAGAGACGGACGCCGGGATTATTGTC AGCGGGGCGAAAGTTGTCGCCACTAACTCCGCCCTGACTCACTACAACATGATTGGTTTC GGCTCAGCCCAGGTGATGGGCGAAAACCCGGATTTTGCTCTGATGTTTGTCGCGCCAATG GATGCCGAAGGCGTAAAACTTATTTCGCGCGCCTCGTATGAAATGGTCGCGGGCGCGACG GGCTCGCCGTTTGATTATCCCCTCTCCAGCCGTTTTGATGAAAACGATGCCATTCTGGTG ATGGACAAGGTGCTGATCCCGTGGGAAAACGTATTAATTTACCGTGATTTCGATCGTTGT CGTCGCTGGACGATGGAAGGCGGCTTTGCCCGTATGTATCCACTGCAAGCCTGTGTTCGT CTGGCGGTAAAACTTGATTTCATTACCGCGCTGCTGAAAAAATCGCTCGAATGTACGGGT ACCGTAGAGTTCCGGGGCGTGCAGGCCGATCTCGGCGAAGTCGTGGCCTGGCGCAATATG TTCTGGGCATTGAGCGATTCTATGTGTTCTGAAGCAACCCCGTGGGTAAACGGCGCCTGG CTACCGGACCACGCCGCGCTGCAAACCTATCGTGTGATGGCCCCAATGGCCTACGCGAAA ATTAAAAATATTATTGAACGTAACGTTACCAGCGGCCTGATTTACCTGCCTTCCAGCGCC CGCGATCTGAATAATCCGCAAATCGACCAGTACCTGGCGAAATACGTACGCGGCTCTAAC GGAATGGACCATGTTGAACGTATCAAAATTCTTAAATTGATGTGGGATGCCATCGGCAGC GAGTTTGGCGGTCGCCATGAGCTGTACGAGATTAACTACTCGGGCAGCCAGGATGAAATT CGTCTGCAGTGTCTGCGTCAGGCCCAGAGCTCCGGCAATATGGATAAGATGATGGCAATG GTCGATCGCTGCCTCTCCGAATACGATCAGAATGGCTGGACGGTTTCGCATTTGCACAAT AACGACGACATCAATCAACTGGATAAGCTGCTGAAATAAATGCAAGTAGATGAACAACGT CTGCGTTTTCGCGATGCGATGGCAAGTCTGGCGGCAGCGGTCAACATCGTAACCACGGCG GGTCACGCCGGACGCTGCGGTATCACCGCAACAGCGGTTTGCTCAGTCACTGATACGCCG CCCTCCGTGATGGTATGTATTAATGCCAATAGCGCCATGAACCCCGTTTTTCAGGGCAAC GGCAGGCTGTGCATTAATGTACTTAACCATGAGCAGGAGCTGATGGCGCGCCACTTTGCC GGTATGACGGGGATGGCGATGGAGGAGCGTTTTCACCAGCCATGTTGGCAAAACGGGCCG CTGGGCCAGCCGGTACTTAACGGCGCGCTGGCCAGTCTTGAAGGCGAGATCAGCGAGGTA CAAACCATTGGCACGCATCTGGTGTATCTGGTGGCGATCAAAAATATTATTCTTAGCCAG GAGGGGCATGGCCTGATTTATTTCAAACGCCGTTTTCATCCGGTCAGACTTGAGATGGAA GCGCCTGTTTAAATGAAGGGTACTGTTTTCGCCGTTGCGTTAAACCATCGCAGCCAGCTT GATGCCTGGCAAGAGGCTTTCTCTCAGCCTCCCTATAATGCGCCGCCTAAAACCGCAGTG TGGTTCATCAAGCCGCGTAATACGGTGATTCGTCACGGCGAACCCATTCCTTATCCGCAG GGAGAAAAGGTACTGAGCGGCGCGACAGTGGCGCTCATTGTGGGGAAAACCGCCAGCCGG ATACGCCCTGAAGCGGCGGCGGACTATATCGCCGGGTATGCGCTGGCTAACGAGGTCAGC CTGCCGGAAGAGAGCTTTTATCGCCCGGCGATTAAAGCGAAATGTCGCGATGGCTTTTGC CCGCTGGGTGAAATGGCGCCGCTGAGTGATGTGGATAATCTCACCATTATCACTGAAATC AACGGACGAGAAGCGGACCACTGGAATACTGCCGATTTACAGCGTAGCGCCGCACAACTG CTTAGCGCGTTAAGTGAGTTCGCTACACTTAACCCTGGCGATGCGATCTTACTTGGTACG CCGCAGAATCGCGTTGCGCTGCGTCCCGGCGATCGGGTGCGTATTCTGGCGAAAGGTTTA CCCGCGCTGGAAAATCCGGTTGTCGCAGAAGATGAATTCGCCCGCCACCAGACGTTTACG TGGCCGCTGTCAGCGACGGGAACGTTATTTGCGCTGGGGTTGAACTACGCCGATCACGCC AGCGAGCTGGCATTTACGCCGCCGAAAGAGCCGCTGGTATTTATCAAAGCGCCAAACACC TTTACCGAACATCACCAAACGTCGGTGCGCCCGAACAACGTCGAATATATGCACTACGAA GCCGAGCTGGTCGTGGTGATTGGCAAAACGGCGCGTAAGGTGAGCGAAGCCGAAGCCATG GAGTATGTGGCCGGTTACACCGTCTGTAACGACTACGCGATCCGCGACTATCTGGAAAAC TACTACCGTCCGAATCTGCGGGTAAAAAGCCGCGACGGCCTGACGCCGATAGGCCCGTGG ATTGTGGATAAAGAGGCGGTTTCTGATCCGCACAACCTGACGTTACGCACCTTTGTCAAC GGTGAGCTGCGGCAGGAAGGGACGACCGCCGATCTGATCTTCAGCATCCCGTTCCTGATT TCTTATCTGAGCGAATTTATGACGTTGCAACCGGGCGACATGATTGCCACCGGTACGCCG AAAGGGCTGTCCGATGTGGTGCCGGGGGATGAAGTTGTCGTTGAAGTAGAAGGCGTGGGT CGCCTGGTTAACCGAATCGTCAGTGAGGAGAGCGCAAAATGAATGAAAAATGCTTTCAAA GACGCGTTAAAAGCGGGGCGCCCGCAAATCGGTTTGTGGCTGGGGCTTGCCAACAGTTAC AGCGCTGAACTGTTAGCGGGCGCCGGCTTCGACTGGCTACTGATTGACGGTGAACACGCG CCAAACAACGTGCAGACGGTGTTGACCCAGTTGCAGGCGATTGCGCCTTATCCCAGCCAG CCGGTGGTGCGTCCGTCATGGAACGATCCGGTACAGATTAAGCAACTGCTCGACGTCGGC GCGCAAACGCTGCTGATACCGATGGTGCAGAATGCCGATGAAGCGCGAAACGCCGTGGCG GCTACGCGTTATCCGCCTGCCGGTATTCGCGGCGTGGGCAGCGCGCTGGCGCGGGCATCG CGCTGGAATCGCATTCCGGACTATCTCCACCAGGCCAACGACGCCATGTGCGTACTGGTG CAGATTGAAACGCGTGAGGCGATGAGCAATCTGGCGTCAATTCTCGACGTGGATGGCATT GACGGCGTGTTTATTGGCCCGGCGGATCTCAGCGCCGATATGGGCTTTGCCGGCAATCCG CAGCACCCGGAAGTGCAGGCGGCGATTGAGAACGCCATCGTGCAGATACGCGCGGCGGGG AAAGCGCCGGGGATTCTGATGGCCAATGAAGCACTGGCGAAACGTTATCTGGAACTGGGG GCGCTATTTGTCGCCGTCGGCGTTGACACCACGCTGCTGGCGCGCGGAGCGGAGGCGCTG GCGGCGCGCTTTGGCGCAGAAAAAAAACTGTCCGGTGCGTCCGGCGTCTATTAAATGCAT GATTCATTAACCATCGCCTTGCTTCAGGCGCGCGAAGCGGCAATGACCTATTTCCGCCCC ATCGTTAAAAGCCACAATCTGACCGACCAGCAATGGCGCATTGTGCGAATCCTGGCCGAT AGCCCCTCTATGGATTTTCACGAGCTGGCCTTTCGTACCTGTATTTTGCGTCCAAGTCTG ACCGGAATATTGACGCGCATGGAGCGAGACGGACTGGTGTTGCGACTCAAGCCGGTTAAC GATCAGCGTAAGTTATATGTCATGTTGACGGAGCAGGGACAAACGTTGTACGCCCGTGCC CGGAGCGAGGTAGAAGAGGCTTATCGAAAAATTGAGGCCGATTTCACGCCCGAAAAAACA CAGCAATTGATGCTGCTGCTGGACGATCTTATTGCTCTGGGGCGCCAGCATCCTGATAGC GAAGCGGAAGCATAGATGAGCGACACATCATCTGCACTTCCGGAAAGCCCCGAGTCTGTC GGTTCGCACAACGCGCTCAGCACGGGTCAACAAACCGTCATAAATAAACTGTTCCGCCGA CTGATCGTATTTTTATTCGTGTTGTTTATCTTCTCGTTTTTAGACCGTATCAACATCGGT TTTGCCGGGTTGACGATGGGGCAGGATCTGGGGTTAAGCGCCACCATGTTTGGTCTTGCC ACGACGCTGTTTTACGCCACCTACGTCATTTTCGGCATTCCCAGCAACGTGATGTTGAGC ATCGTCGGCGCCCGCCGCTGGATTGCGACCATTATGGTGCTATGGGGCATTGCATCTACC GCCACGATGTTCGCGGTGGGACCGAAAAGCCTGTATGTGCTGCGAATGCTGGTGGGCATT ACCGAAGCGGGCTTTTTGCCAGGAATATTGCTCTATTTAACCTACTGGTTCCCGGCATTT TTCCGCGCCCGCGCCAACGCATTATTTATGATTGCCATGCCGGCCACTACCGCGTTGGGG TCAATTGTCTCCGGCTATATTTTATCGCTGGACGGCATATTCAATCTGCATGGATGGCAG TGGTTATTCCTGTTGGAAGGATTTCCGTCAGTTTTGTTAGGCATTATGGTCTGGTTTTAC CTGGATGATACCCCGGCAAAAGCCAAATGGCTGACGGCAGAGGATAAAAAATGTTTGCAG GAGATGATGGATAATGATCGCCTGACGCTGGTTCAGCCTGAGGGGGCCATCAGCCATAAC GCCATGCAGCAGCGTAGCCTGTGGCGCGAAGTATTCACGCCAATTGTACTGATGTATACG CTGGCCTATTTTTGCCTTACCAATACGCTTAGCGCCATTAGTATCTGGACGCCGCAAATC CTGAAAAGTTTTAATGAAGGCAGCAGCAATATCACCATCGGCCTGCTGGCGGCGATCCCG CAGATTTGTACTGTTCTGGGCATGATTTACTGGAGCCGCCATTCGGACAAACATCAGGAG CGTAAACACCACACTGCGTTACCGTTCCTGTTTGCCGCCGCGGGCTGGCTGCTGGCGTCG GCGACCGACCGTAACCTGATCCAGCTCCTGGGGATCGTGATGGCATCCACGGGTTCCTTT AGCGCGATGGCGATCTTCTGGACCACGCCGGATCAGTCGATCAGTTTACGCGCCAGGGCG ATAGGCATTGCGGTCATCAATGCCACCGGCAATATTGGCTCCGCGCTCAGCCCGGTTATG ATTGGCTGGCTAAAAGATATCACTGGTAGCTTCAATAGCGGACTCTGGTTTGTCGCTTCT CTGTTAGTCGTCGGCGCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCGCGC GCCACCCCTTGAATGGGCAAGTTAGCGTTAGCAGCAAAAATTACCCACGTGCCGTCGATG TATCTTTCTGAACTGCCAGGAAAAAATCACGGTTGTCGTCAGGCAGCCATTGATGGGCAT ATTGAAATTGGCAAGCGTTGCCGCGAAATGGGCGTTGACACCATTATCGTATTCGACACC CACTGGCTGGTGAATAGCGCTTACCACATTAATTGTGCCGACCATTTCCAGGGCGTCTAT ACCAGCAACGAATTGCCGCACTTTATTCGCGACATGACCTATGACTATGACGGTAATCCG GCGCTCGGCCATCTGATCGCCGACGAGGCGGTCAAACTGGGCGTGCGCGCCAAAGCGCAC AACATCCCGAGCCTGAAGCTGGAGTATGGCACGCTGGTGCCGATGCGCTACATGAACAGC GACAAGCACTTCAAAGTGGTCTCCATCTCGGCGTTCTGCACTGTGCATGATTTTGCCGAC AGCCGCAAACTGGGCGAAGCCATTCTCAAGGCGATTGAGAAATATGACGGTACCGTAGCG GTATTCGCCAGTGGTTCTCTGTCGCACCGTTTTATTGACGACCAACGGGCGGAAGAGGGG ATGAACAGCTACACCCGCGAGTTCGATCATCAAATGGACGAGCGCGTGGTCAAGCTGTGG CGCGAAGGCAAATTCAAGGAGTTTTGCACCATGTTGCCGGAGTACGCCGACTACTGCTAC GGCGAAGGCAACATGCACGACACGGTCATGCTACTGGGAATGCTGGGGTGGGACAAATAC GACGGCAAGGTGGAGTTCATCACCGACCTGTTCGCCAGCTCCGGTACCGGCCAGGTAAAC GCTGTTTTCCCGCTGCCTGCGTAAATGAAGAAAATAAATCATTGGATTAACGGCAAAAAC GTTGCAGGTAACGACTACTTCCAGACCACTAACCCGGCGACCGGTGATGTGCTGGCGGAA GTAGCCTCCGGCGGTGAAGCAGAAGTGAACCAGGCTGTCGCGGCGGCAAAAGAGGCGTTC CCGAAATGGGCCAACCTGCCGATGAAAGAGCGCGCGCGCCTGATGCGCCGCCTTGGCGAC CTGATTGACCAGCATGTGCCGGAAATCGCGGCGATGGAAACCGCCGACACCGGCCTGCCT ATTCACCAGACTAAAACGTGCTGAGTGCTGATCCCGCGCGCCTCGCATAACTTCGAATTC TTCGCCGAAGTGTGCCAGCAGATGAACGGCAAGACCTATCCGGTTGACGATAAAATGCTC AATTATACGCTGGTGCAGCCCGTCGGCGTCTGCGCGCTGGTGTCGCCGTGGAACGTGCCG TTTATGACCGCGACTTGGAAAGTTGCGCCGTGCCTGGCGCTGGGTAACACCGCGGTGCTC AAAATGTCCGAGCTGTCGCCGCTGACTGCCGACAGGCTGGGCGAGCTGGCACTGGAGGCA GGAATTCCGGCAGGCGTGCTGAACGTGGTGCAGGGCTACGGCGCGACGGCGGGCGATGCG CTGGTACGCCACCATGACGTGCGTGCGGTGTCGTTTACCGGCGGTACCGCCACCGGTCGC AATATCATGAAAAATGCCGGGCTGAAAAAATACTCGATGGAGCTGGGCGGCAAATCGCCG GTGCTGATTTTTGAAGACGCCGACATTGAGCGCGCGCTGGACGCCGCGCTGTTCACCATC TTCTCGATCAACGGCGAACGCTGCACCGCTGGGTCGCGCATCTTTATCCAGCAGAGCATT TACCCTGAGTTCGTGAAGCGCTTTGCCGAACGCGCGAATCGCCTGCGTGTCGGCGATCCG ACCGACCCGAACACCCAGGTCGGCGCGCTGATTAGCCAACAGCACTGGGAGAAAGTCTCC GGTTATATCCGCCTCGGCATTGAAGAGGGGGCAACGCTGCTGGCGGGCGGTGCGGAAAAA CCCACTGACCTGCCTGCGCATCTGAAAGGCGGTAACTTCCTGCGCCCAACCGTGCTGGCC GATGTCGACAACCGTATGCGCGTTGCGCAGGAAGAGATCTTTGGGCCGGTCGCCTGCCTG CTGCCATTCAAAGACGAAGCGGAAGGGTTACGTTTGGCGAACGATGTGGAATACGGTCTG GCCTCTTATATCTGGACCCAGGACGTGAGCAAAGTGTTGCGCCTGGCGCGTGGGATTGAA GCCGGCATGGTCTTCGTCAACACCCAGAACGTCCGCGACCTGCGCCAGCCGTTCGGCGGC GTGAAAGCCTCCGGTACCGGGCGCGAAGGCGGCGAATATAGCTTCGAAGTGTTTGCGGAA ATGAAAAACGTCTGCATCTCAATGGGCGACCATCCTATCCCAAAATGGGGAGTTTGAATG CCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGCCTG TTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATCCGC AGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTT GTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGC GAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTG GCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTA CACGCGTTATTTAAATAGATGCTCGATAAACAGACCCATACCCTGATCGCTCAGCGACTT AATCAGGCTGAAAAACAGCGTGAACAGATTCGCGCAGTGTCGCTGGATTATCCCAACATC ACTATTGAAGATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATTGCCGAAGGG CGCACGCTCAAAGGCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAA ATCAGCGAACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGAGAT ATCCCCACCGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCG AAACCGCTGCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTG ATTCCGGCGCTGGAACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGC CCGCGCAAAGTGTTCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGT GGTCGCCCCATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGC AACGGCGTGATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGC GTGGCGTGGCTGGCGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATC ATCCTCGGCGGCTCGTTCACCCGCCCGGTGCCGGCGCGCAAGGGCGACACCTTCCATGTC GATTACGGCAACATGGGCGCGATCAGTTGCCGGTTTGTGTAAATGAGCTCTGTACCCGCG CCGCGTGAATATTTTCTTGACTCTATCCGCGCATGGCTGATGTTGTTAGGGATTCCCTTT CATATCTCGTTGATCTATTCCACTCACAGTTGGCATGTCAATAGCGCCGCGCCATCGTGG TGGCTAACCCTGTTTAACGATTTTATCCACGCTTTTCGTATGCAGGTGTTTTTTGTTATT TCTGGTTATTTTTCGTACATGTTATTTTTACGTTATCCATTAAAACACTGGTGGAAAGTA CGGGTAGAACGTGTGGGTATTCCCATGCTTACCGCAATCCCTTTGCTTACCTTGCCGCAA TTTATCCTGTTGCAATATGTCAAAGAGAAAACAGAGAACTGGCCTACACTCTCTGCCTAT GAAAAATATAATACGTTAGCGTGGGAACTCATTTCACATCTGTGGTTTTTACTGGTGCTG GTGATATTAACCACCGTCAGCATCGGGATTTTTACCTGGTTCCAAAAAAGGCAGGAAACA AGCAAGCCTCGTCCCGCCGCTATTTCGCTGGCCAAACTTTCGCTTATTTTTTTCCTGCTG GGGGTGGCGTACGCTGCTATCAGGCGCATTATATTCATCGTATATCCGGCAATCCTCAGT GACGGCATGTTCAATTTTATTGTGATGCAAACGCTATTTTATGTGCCGTTTTTTATTCTC GGCGCGTTGGCCTTCATTCACCCCGATCTGAAAGCGCGCTTCACCACGCCCTCACGCGGA TGCACTTTAGGCGCTGCCGTTGCTTTTATCGCGTATCTGCTGAATCAACGTTATGGGAGC GGCGACGCCTGGATGTACGAAACCGAATCCGTGATTACGATGGTAATGGGGCTATGGATG GTGAACGTGGTATTTTCACTGGGGCATCGCTTGTTAAACTTTCAGTCCGCGCGTGTCACC TATTTCGTGAATGCTTCGCTGTTTATTTATCTGGTGCATCATCCCTTAACGCTTTTCTTT GGCGCGTATATTACACCGCATATCTCCTCCAACCTGATCGGGTTCTTGTGCGGGCTGATA TTTGTTATGGGTATTGCGTTAATTCTGTATGAAATTCATTTACGCATCCCGCTCCTGAAA TTTCTCTTTTCAGGTAAACCGCCGGTAAAACAAGAAAGCCGCGCCGCGATCGGGTAGATG AAACATAAACGACAAATGATGAAAATGCGTTGGTTGGGCGCAGCTATTATGTTAACGCTC TACGCATCATCGAGCTGGGCGTTCAGTATTGATGACGTGGCAAAACAAGCTCAATCTTTA GCCGGGAAAGGCTATGAGGCGCCTAAAAGCAACTTGCCCTCCGTTTTCCGCGACATGAAA TATGCGGATTATCAGCAGATCCAGTTTAACAGCGATAAAGCCTACTGGAACAACTTAAAG ACCCCTTTTAAGCTCGAATTTTACCATCAGGGGATGTACTTCGATACGCCGGTCAAGATT AACGAAGTGACGGCGACGACGGTCAAAAGAATCAAATACAGCCCGGATTACTTCAATTTT GGCAATGTTCAGCACGATAAAGACACGGTAAAAGATTTAGGCTTCGCCGGGTTCAAAGTC CTGTACCCCATTAACAGTAAAGATAAGAACGACGAAATCGTCAGTATGCTTGGCGCCAGC TATTTCCGCGTTATCGGCGCAGGCCAGGTGTATGGCTTATCTGCGCGCGGCCTGGCGATT GATACCGCCTTACCATCTGGTGAAGAGTTTCCCCGCTTTCGCGAGTTCTGGATTGAGCGT CCAAAACCCACCGATAAGCGTTTGACCGTCTATGCATTACTGGATTCTCCGCGCGCGACC GGCGCTTACCGTTTTGTGATCATTCCTGGCCGCGATACCGTGGTGGACGTGCAGTCAAAA GTCTATCTGCGCGATAAGGTGGGCAAGCTGGGCGTTGCGCCATTAACCAGTATGTTCCTG TTTGGGCCAAACCAGCCGTCGCCGACGACCAACTATCGTCCGGAATTGCATGACTCGAAC GGCTTATCCATTCATGCGGGTAATGGCGAGTGGATTTGGCGTCCGCTGAACAATCCAAAA CACCTCGCTGTGAGCAGCTATGCGATGGAAAACCCTCAGGGATTCGGCCTGTTGCAGCGT GGTCGCGAGTTCTCGCGCTTTGAAGATTTAGACGATCGCTATGACCTGCGTCCAAGCGCC TGGATTACCCCGAAAGGCGACTGGGGCAAAGGTAAGGTTGAACTGGTTGAAATTCCGACC AATGATGAAACCAACGATAACATCGTCGCTTACTGGACTCCGGATCAACTGCCGGAACCG GGTAAAGAGATGAACTTCAAGTACACTCTGACCTTCAGCCGCGATGAAGATAAACTTCAT GCGCCGGATAATGCCTGGGTGCTGCAAACACGCCGCTCAACGGGCGACGTTAAACAGTCG AATCTGATTCGCCAGCCCGACGGCACTATTGCCTTTGTGGTGGATTTCGTTGGCGCCGAC ATGAAAAAACTGCCGCCGGATACGCCCGTCGCTGCACAAACCAGCATTGGCGATAACGGT GAAATCGTTGACAGTAATGTACGCTATAACCCAGTCACTAAAGGCTGGCGTTTAATGCTG CGCGTGAAAGTCAAAGACGCGAAGAAAACCACGGAAATGCGTGCCGCATTGGTGAATGCC GATCAGACGCTAAGTGAAACCTGGAGCTACCAGTTACCTGCCAATGAATAAATGAATAAA ACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCATTGCCGAAA ACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTACTCGCGAGAA GACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCGGATTCATTG GCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCTATGCCAAAA GCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGCCGTTTCTGG GATCGCCTGCGTGGGCGGGATGTAACGCCGCGCTATGTTTCTCGTCTGACAAAAGAAGAG CAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATTTTGTTAATT TTGACTCTGGCGCAAACCGTCGTCGCGACCTGGTATATGAAGACCATTCTGCCCTATCAG GGATGGGCGCTCATCAATCCTATGGATATGGTGGGGCAGGATATTTGGGTCTCCTTTATG CAGCTCCTGCCCTACATGCTGCAAACCGGTATCCTGATTTTGTTTGCCGTGCTGTTCTGC TGGGTGTCTGCCGGATTCTGGACGGCGCTGATGGGCTTCCTGCAACTGCTTATCGGGCGC GATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCGGAACACCAG ACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCCGGTCTGCGC GCGACCTGGGAGTCCGTTAAAGCCACAGGCAACGCCGCGCATTTTGACGTCTATATCCTT AGCGATAGTTATAACCCGGATATCTGCGTGGCGGAGCAAAAGGCGTGGATGGAGCTCATC GCGGAAGTGCAGGGCGAAGGCCAAATTTTTTACCGTCGCCGCCGCCGCCGTATGAAACGC AAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGCTATATGGTG GTGCTGGACGCGGACTCAGTGATGAGCGGCGAGTGTCTGAGCGGGCTGGTGCGCCTGATG GAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGGATGGATACT CTGTATGCCCGCTGCCAACAGTTCGCGACCCGTGTTTATGGACCGCTGTTTACCGCCGGG CTGCACTTCTGGCAGTTGGGGGAGTCGCACTACTGGGGGCACAATGCCATTATCCGCGTG AAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCGTTCGCCGGA TCGATTCTTTCCCACGACTTTGTGGAGGCGGCGCTAATGCGTCGGGCAGGGTGGGGCGTC TGGATTGCCTACGATCTCCCCGGCTCCTATGAAGAGCTGCCGCCAAACCTGCTGGATGAG CTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTGTTCCTGGTG AAAGGAATGCACCCGGTGCATCGCGCCGTGTTCCTGACCGGGGTAATGTCATACCTGTCC GCGCCGTTATGGTTTATGTTCCTCGCGCTTTCTACCGCGCTGCAGGTCGTTCATGCGTTA ACAGAGCCGCAATATTTCCTTCAGCCGCGCCAGCTTTTTCCGGTCTGGCCGCAGTGGCGT CCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTGCCGAAGCTG CTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTCTGGCGCGTT ACGCTGTCGCTATTGCTGGAAGTGCTGTTCTCCGTGTTGCTGGCGCCGGTGCGTATGCTG TTTCATACCGTGTTTGTGGTCAGCGCGTTCCTCGGCTGGGAAGTGGTCTGGAACTCACCG CAACGCGACGATGATTCTACGCCGTGGGGAGAAGCCTTTATGCGTCACGGCTCTCAACTG CTGCTGGGGCTGGTCTGGGCGGTGGGTATGGCGTGGCTGGATTTACGCTTTCTGTTCTGG CTGGCGCCGATTGTCTTTTCGCTGATTCTGTCGCCATTTGTTTCGGTGATCTCCAGTCGT TCAACGGTAGGATTACGCACCAAACGCTGGAAGCTGTTCCTGATCCCGGAAGAGTATTCG CCGCCTCAGGTGTTGGTCGATACCGATAAATATCTGGAGATGAATCGCCGCCGTATTCTG GACGATGGCTTTATGCATGCGGTATTTAACCCGTCGCTTAATGCGCTGGCGACCGCGATG GCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGTCATGTGGAG CAGGCGCTAAACGAAACGCCGGAGAAACTGAACCGCGATCGGCGTCTGGTTTTGCTCAGC GATCCGGTGACGATGGCGCGTTTACACTATCGGGTCTGGAATGCGCCAGAGAGATACTCT TCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAGGGACGAACA TCGTCAGCGGGATAAatgtcgcgcgtctcgcaggcgaggaacctgggtaaatattttctt ctcatcgataacatgttagtggtgctgggttttttcgtcgtcttcccgctcatctctatt cgctttgtcgatcaaatggggtgggctgccgtaatggtagggatcgcgctcggcctgcgt cagtttattcaacaaggtctgggcatttttggcggcgccatcgccgatcgctttggcgcg aaaccgatgattgtcaccggtatgctgatgcgcgccgcaggctttgccaccatgggtatc gcgcatgagccctggctcttgtggttttcctgctttctttccggtctcggcggtacgctt ttcgacccgccgcgttcagcgctggtggtcaaattaattcgtccggagcaacggggccgc ttcttctctctgttgatgatgcaggacagcgcgggcgcggtgattggcgcgctgctggga agctggttgctacaatacgattttcgcctggtctgcgcgacgggcgctattttgttcata ttatgcgcccttttcaacgcatggctgcttccggcctggaagctatcaacggccagaacg ccggtgcgtgaaggaatgcgccgcgtcatgagcaataaaaggtttgtcacctacgtgctg acgctggcgggctactatatgctggcggtacaggtcatgttaatgctgccgattatggta aacgatatcgccggttcgcctgctgccgtgaaatggatgtacgctattgaggcgtgtctc tcgctgacgttgctctacccgattgcccgctggagcgaaaagcgttttcggctggagcat cggctgatggccggtttgctcgtcatgtcgctgagcatgctccccatcgggatggtgggc aatttacagcagctttttacgcttatttgcgctttctacatcggctcggttatcgccgaa ccggcgcgcgaaacgctcagcgcgtcgcccgcggacgcgagggcgcggggaagctatatg ggctttagccgtctgggattagccattggcggcgcgattagttatatcggcggcggctgg ttgtttgatatgggtaaagcgcttgcgcagcctgaactaccgtggatgatgctcggtatt atcggctttatcacctttttggctttaggctggcaatttagtcataagcgcacgccgcgc cggatgctggaacccggcgcctgaATGACCATGTATGCCACGCTGGAAGAAGCTATCGAT GCAGCCCGGGAAGAATTTCTGGCTGACCATCCAGGCCTCGAACAAGACGAAGCGAATGTG CAGCAGTTCAACGTTCAGAAATATGTACTGCAGGATGGGGACATCATGTGGCAGGTCGAA TTTTTCGCCGATGAAGGTGAAGATGGCGAATGTCTGCCGATGCTGAGTGGTGAAGCCGCA CAGAGCGTGTTTGACGGCGATTATGATGAGATAGAGATCCGCCAGGAATGGCAGGAAGAG AATACTTTGCATGAATGGGATGAAGGGGAATTCCAGCTTGAACCCCCGCTTGATACCGAG GAAGGCCGTACTGCGGCAGACGAATGGGATGAGCGTTAAATGTCACTATTAGCCAGGCTG GAACAAAGTGTACACGAAAACGGTGGGCTGATTGTCTCATGCCAACCGGTACCAGGCAGC CCTATGGATAAACCTGAAATTGTGGCTGCAATGGCACAGGCAGCGGCTTCGGCGGGTGCG GTCGCTGTGCGCATTGAAGGCATTGAGAATCTGCGGACTGTTCGTCCCCATCTTTCTGTT CCTATTATTGGGATAATTAAACGTGACCTTACAGGGTCGCCAGTCCGTATCACTCCATAT TTACAGGATGTTGACGCCCTGGCGCAGGCAGGTGCCGATATTATCGCTTTTGATGCCTCA TTCCGCTCTCGCCCGGTTGATATTGATAGTTTACTGACACGTATTCGCCTGCATGGATTA CTGGCGATGGCAGACTGTTCAACCGTGAATGAAGGCATAAGTTGCCATCAGAAAGGAATC GAATTCATTGGTACAACACTGTCTGGCTATACCGGTCCCATCACGCCGGTTGAGCCAGAT TTGGCAATGGTGACACAACTGAGTCATGCAGGTTGTCGTGTTATTGCCGAGGGGCGCTAT AACACGCCTGCACTGGCGGCCAATGCTATTGAGCATGGTGCCTGGGCAGTTACCGTTGGT TCCGCTATCACCCGTATCGAGCATATCTGTCAGTGGTTCAGTCACGCAGTAAAACGCTGA ATGAAAAATTTTAAGAAAATGATGACGCTAATGGCGCTATGTTTATCAGTTGCTATCACC ACATCAGGATATGCAACCACGCTTCCTGATATACCAGAACCACTGAAAAATGGTACTGGC GCTATTGATAATAATGGCGTGATTTATGTCGGCTTAGGTACCGCAGGGACATCCTGGTAT AAAATTGATCTTAAAAAGCAACATAAAGACTGGGAGCGTATAAAGTCGTTTCCTGGTGGA GCTCGTGAGCAATCCGTGTCGGTATTTTTAAATGATAAGCTGTATGTTTTTGGTGGCGTA GGGAAAAAAAACAGTGAATCACCGTTGCAGGTTTATAGCGATGTGTACAAATACTCACCG GTGAAAAATACATGGCAAAAAGTTGATACTATATCTCCAGTTGGATTAACAGGGCATACG GGAGTAAAATTAAACGAAACGATGGTACTTATTACCGGAGGGGTTAATGAGCATATCTTT GATAAGTATTTTATTGATATAGCGGCTGCGGATGAAAGTGAAAAAAATAAAGTCATCTAT AATTATTTTAATAAACCTGCCAAAGATTATTTTTTTAATAAAATCGTATTTATCTACAAT GCTAAAGAGAACACATGGAAGAATGCCGGTGAGCTGCCAGGCGCGGGGACGGCAGGATCG TCATCGGTAATGGAAAATAATTTCTTGATGCTGATTAATGGTGAGCTCAAACCGGGTTTA CGTACCGATGTGATTTACCGCGCCATGTGGGATAACGATAAGCTAACATGGTTGAAGAAC AGCCAGTTACCGCCATCGCCTGGAGAACAACAGCAGGAAGGGTTGGCCGGAGCATTTTCG GGCTATAGCCACGGTGTCCTGCTTGTCGGTGGTGGCGCGAATTTTCCGGGAGCAAAACAA AATTATACTAATGGAAAGTTTTATTCCCACGAAGGGATAAATAAAAAATGGCGAGATGAA GTCTATGGTTTGATTAATGGCCATTGGCAATATATGGGTAAAATGAAACAACCTCTCGGC TATGGTGTATCAGTAAGTTATGGTGATGAAGTTTTCCTTATTGGTGGTGAAAATGCTAAA GGGAAACCTGTTTCGTCTGTAACCTCCTTTACCATGCGTGATGGTAATTTATTAATAAAA TAAGTGATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACACGTCCACAAAAAAATGCT TTATTTTCAGCATGGCTGGGTTACGTTTTTGATGGCTTCGACTTTATGCTGATTTTCTAC ATTATGTATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTTGCC ACAGCGGCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGACAAA TTTGGCCGTAAGCCGTTAATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGGTTA AGTGGCCTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGTTTTATTGTCGGTATGGGG ATGGCGGGGAAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCATTTA AAATCTAAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCAGCC TATTTTATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGTTTG CTACCCGTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGGGAA GAAGCCAAACTCAGTGGTCTCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCTTTG TCAATGAAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATTGTT CTGTTCTCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTGGCG GGAGAGGGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGCACT GTATTGGGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACGTTC AGCATTGGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAAGAT AATTATTTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTTGGC GGGCTGGTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGTACC GGGCTTATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACCTGG CTTGGAATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACCGCA ACAATTCTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAAAGG TTTCAGTCAACAAAAGAATTTTAAATGAAAAAGTATCTTGCTTTCGCCGTTACGCTGCTG GGTATGGGTAAAGTCATCGCCTGTACTACCCTTTTGGTAGGCAATCAGGCTTCGGCTGAC GGCTCCTTTATTATCGCGCGCAACGAGGATGGCTCGGCAAATAACGCCAAGCATAAGGTT ATTCATCCCGTCGCGTTTCATCAACAAGGCGAGTATAAAGCACATCGCAACAATTTTAGC TGGCCGCTTCCGGAGACAGCGATGCGCTATACGGCGATTCATGACTTTGATACTAACGAT AACGCCATGGGTGAAGCCGGTTTCAATTCGGCGGGCGTCGGAATGAGCGCAACGGAAACC ATTTACAACGGCAGAGCGGCGCTGGCTGCCGATCCTTACGTGACAAAAACGGGAATCACG GAAGACGCCATTGAGTCCGTGATCCTGCCAGTGGCGCAATCGGCGCGTCAGGGCGCCAAA TTACTGGGAGATATTATTGAACAAAAAGGCGCGGGCGAAGGTTTCGGCGTCGCGTTTATT GATAGCAAAGAGATATGGTATCTGGAGACGGGAAGCGGACATCAATGGCTGGCAGTACGA CTTCCGGCAGATAGCTATTTCGTTTCCGCCAATCAGGGACGTTTACGCCATTACGATCCG AATGATAACGCGAATTATATGGCGTCACCAACGTTAGTAAGCTTTGCGAAAAAGCAGGGA TTATATGATCCGGCCCGCGGCGAATTCGACTTTCATCAAGCCTATTCGCAGGATAACAAA AACGATACCACCTATAATTATCCGCGCGTCTGGACGCTACAACACCAGTTTAATCCGCAT CTGGATACGGTCGTTAGCGAAGGGGAAACATTTTCTGTTTTTTTAACGCCAATAACGAAG ATCAGCGTGGCGGCAGTAAAAAACGCGTTACGCAATCACTATCAGGGAACGTCGCACGAC CCTTATGCCAGTCATAATCCACAAGAACCATGGCGACCTATATCCGTTTTTCGTACCCAG GAGTCACATATTTTACAGGTCAGACCGAAATTACCGCAGGCTATCGGCAACGTAGAATAC ATCGCCTATGGAATGCCATCTCTTAGCGTCTATCTCCCCTATTACCAGGGGATGCGTCAT TATCAACCCGGAGATGATAAAGGAACCGATCGGGCGAGCAACGACTCTACCTACTGGACA TTCCGCACGCTGCAAACACTGGTTATGCAAGACTACAATACGTTTGCGCCAGATGTGCAA CATGCCTGGAAAACATTTGAACAGCAAACAGCTAAGCAACAGTATAAGATGGAGCAGAGC TATCTGAGATTATATGCGTCGCATCCGAAAGAAGCACAACGCTTACTGCAAAATTTTGAA GATAAAACGATGCAAAATGCGCAGACGCTCGCCCGTCGCCTGACCAATAATATTATTACG ACAATGACTTACCGCACAGATATGAAATATCACTTTTCAAGTACGCAGCCATAAATGGGA AGACAAAAAGCAGTGATCAAAGCTCGTCGTGAAGCAAAGCGTGTGTTGAGACGAGATTCG CGTAGTCATAAGCAACGTGAAGAAGAATCGGTCACGTCACTGGTACAGATGGGCGGAGTA GAAGCCATTGGCATGGCGCGCGATAGTCGCGATACCTCTCCTGTTAAGGCGCGAAATGAA GCACAGGCGCATTATCTGAACGCTATCGACAGTAAACAGCTTATTTTTGCGACCGGCGAA GCCGGCTGCGGAAAAACATGGATCAGTGCGGCAAAGGCGGCAGAAGCATTGATTCATAAG GACGTCGAGAGGATCATTGTGACGCGTCCGGTATTGCAGGCTGATGAAGATCTTGGTTTT TTGCCCGGTGATATCGCTGAAAAATTCGCGCCTTATTTTCGTCCCGTCTACGATGTCCTG CTTAAACGGTTGGGCGCGTCCTTTATGCAATATTGTTTGCGCCCGGAAATCGGTAAGGTA GAAATTGCCCCGTTCGCCTATATGCGTGGGCGTACTTTTGAAAATGCGGTCGTGATCCTC GACGAGGCGCAAAATGTGACTGCGGCGCAAATGAAAATGTTTTTGACGCGATTAGGCGAA AATGTCACGGTCATTGTCAATGGCGATATTACGCAATGCGACCTGCCGCGCGGTGTGCGT TCCGGGTTGAGTGATGCGTTGGAACGCTTTGAAGAAGATGAAATGGTGGGGATTGTGCAT TTCAACAAAGACGACTGCGTGCGCTCGGCGCTTTGTCAGCGAACGCTCCACGCATACAGC TAAATGGGAACCACCACGATGGGGGTTAAGCTGGACGACGCCACGCGCGAACGGATCAAA ATGGCCGCGTCGCGTATCGATCGCACGCCGCACTGGTTAATAAAACAGGCAATCTTTAGC TATCTGGACAAGCTGGAAAATAGCGATACGCTACCGGAGCTACCTGCGCTGTTTGCCGGC GCGGCAAATGAAAGCGAGGAGCCGGTCGCGCCGCAGGATGAGCCGCATCAGCCCTTTCTG GAGTTTGCCGAACAGATTCTTCCCCAATCCGTCTCTCGCGCCGCCATCACCGCCGCCTGG CGCCGCCCGGAAACCGATGCGGTGTCAATGCTAATGGAACAGGCGCGCCTGTCGCCGCCT GTCGCTGAGCAGGCGCATAAACTGGCGTATCAACTGGCGGAGAAATTGCGCAATCAAAAA TCCGCCAGCGGTCGCGCGGGTATGGTGCAAGGCCTGTTGCAGGAGTTTTCCCTCTCTTCG CAAGAAGGCGTAGCGCTGATGTGTCTGGCGGAAGCGCTGCTGCGTATTCCCGACAAAGCT ACGCGCGATGCGTTAATTCGCGACAAAATCAGTAATGGCAACTGGCAGTCGCATATTGGC CGTAGCCCGTCGCTGTTTGTAAACGCCGCCACCTGGGGGCTGCTCTTTACCGGCCGACTG GTCTCAACGCATAACGAAGCCAATCTTTCGCGCTCGCTGAACCGCATTATCGGCAAGAGC GGCGAACCGTTAATCCGCAAAGGCGTCGACATGGCGATGCGTTTAATGGGCGAGCAGTTC GTGACTGGCGAAACCATTGCTCAGGCGCTGGCGAATGCCCGAAAACTGGAAGAGAAAGGG TTCCGCTATTCTTACGATATGCTGGGCGAAGCCGCGTTAACCGCCGCCGATGCGCAGGCC TATATGGTCTCTTACCAGCAAGCGATTCATGCCATCGGCAAAGCGTCTAACGGTCGCGGT ATTTACGAAGGGCCAGGCATCTCGATTAAGCTGTCCGCCCTGCATCCACGCTATAGTCGC GCGCAATACGATCGGGTAATGGAGGAGCTTTATCCGCGCCTGAAATCCCTGACGCTGCTG GCGCGCCAGTATGATATCGGTCTCAATATCGACGCCGAAGAGGCGGATCGTCTGGAGATC TCGCTTGATCTGCTGGAAAAACTCTGCTTCGAACCCGAACTGGCGGGCTGGAACGGCATT GGCTTTGTGATTCAGGCTTACCAGAAACGCTGCCCGCTGGTCATTGATTATTTAGTCGAT CTGGCCTCCCGTAGCCGCCGTCGGCTGATGATTCGTCTGGTGAAAGGCGCCTACTGGGAT AGCGAGATCAAACGCGCGCAAATGGAAGGGCTGGAGGGCTATCCAGTTTATACCCGCAAA GTGTATACCGATGTCTCTTATCTGGCCTGCGCGAAAAAACTGCTCGCCGTCCCTAATCTG ATCTACCCGCAGTTCGCGACCCATAACGCTCACACACTGGCGGCGATTTATCATCTGGCC GGGCAAAATTACTATCCGGGTCAGTACGAATTCCAGTGCCTGCACGGCATGGGAGAACCG CTGTATGAACAGGTCACCGGTAAAGTGGGGGACGGAAAACTTAACCGTCCCTGCCGTATT TACGCGCCGGTGGGAACACACGAAACCCTGCTGGCCTATCTGGTACGACGCCTGCTGGAA AACGGCGCCAACACCTCTTTTGTCAACCGCATCGCCGATGCCACCCTACCGCTCGATGAA CTGGTGGCCGACCCGGTCGAGGCCGTGGAAAAACTGGCGCAGCAGGAAGGTCAGGCTGGC ATACCGCATCCAAAAATTCCGCTGCCGCGCGATCTGTACGGCGAAGGTCGGATAAACTCC GCCGGACTTGATTTAGCGAATGAACATCGCCTCGCCTCGCTTTCTTCTGCCCTGTTAAGC AACGCCATGCAGAAATGGCAGGCCAAACCTGTGCTGGAACAACCGGTGGCCGACGGTGAG ATGACGCCGGTTATCAACCCGGCGGAACCGAAAGATATTGTTGGCTGGGGACGCGAAGCG ACAGAAAGCGAGGTTGAACAGGCGTTGCAAAACGCGGTCAATCAGGCGCCGGTTTGGTTT GCGACGCCGCCGCAAGAACGCGCCGCTATTTTGCAGCGGGCGGCGGTATTGATGGAAGAC CAAATGCAGCAGTTGATTGGCCTGTTGGTGCGTGAAGCGGGGAAAACGTTCAGCAACGCC ATTGCCGAAGTGCGCGAAGCGGTAGACTTCCTCCATTATTATGCCGGTCAAGTGCGTGAC GATTTCGATAACGAAACGCATCGCCCGTTAGGGCCGGTGGTCTGTATCAGTCCGTGGAAC TTTCCGCTGGCCATTTTCACTGGCCAAATCGCCGCCGCGCTGGCGGCAGGTAACAGCGTT CTGGCGAAACCGGCAGAGCAGACATCGCTGATTGCCGCCCAGGGCATTGCCATTTTGCTG GAAGCGGGCGTACCGCCGGGCGTCGTGCAACTGTTGCCGGGACGGGGAGAAACCGTCGGC GCCCAGCTTACCGCCGATGCGCGTGTACGCGGCGTGATGTTTACCGGTTCCACGGAGGTC GCGACGTTGTTGCAGCGCAACATCGCCACGCGTCTTGACGCCCAGGGGCGCCCTATTCCG TTGATTGCGGAAACCGGCGGTATGAACGCTATGATTGTCGACTCTTCCGCGCTCACCGAG CAGGTGGTCGTGGATGTGCTGGCTTCCGCCTTCGACAGCGCCGGACAACGCTGTTCCGCG CTCCGCGTGCTGTGTTTGCAGGACGATATCGCCGAACATACGCTGAAAATGTTACGCGGC GCGATGGCGGAGTGTCGGATGGGGAATCCAGGCCGTCTGACGACCGATATCGGGCCGGTG ATCGATAGCGAGGCCAAAGCCAACATTGAACGTCATATCCAGACGATGCGCGCCAAAGGC CGCCCGGTTTTCCAGGCCGCGCGTGAAAACAGCGATGACGCGCAGGAATGGCAGACCGGT ACGTTTGTTATGCCCACGCTTATTGAGCTGGAAAACTTCGCAGAACTGGAAAAAGAGGTC TTCGGGCCCGTGCTGCACGTCGTGCGTTATAACCGTAACCAACTGGCGGAGCTTATCGAA CAGATTAACGCTTCCGGCTACGGGCTAACGCTGGGCGTACATACCCGTATTGATGAAACC ATTGCGCAAGTCACCGGTTCCGCCCATGTCGGCAACCTGTACGTTAACCGTAATATGGTG GGCGCGGTCGTCGGCGTCCAGCCGTTTGGCGGCGAAGGCCTGTCCGGCACCGGGCCAAAA GCGGGAGGGCCGCTCTATCTCTACCGCCTGCTGGCACACCGCCCGCCCAATGCGCTCAAT ACGACGCTGACTCGTCAGGATGCGCGTTACCCGGTGGATGCGCAGCTTAAAACCACGCTA CTCGCGCCGTTGACCGCTCTGACGCAATGGGCGGCGGATCGCCCGGCGCTACAGACGCTC TGCCGACAATTCGCCGATCTGGCGCAGGCCGGCACGCAGCGCCTGCTACCGGGGCCGACC GGCGAGCGTAATACCTGGACGCTGTTGCCGCGTGAACGGGTGTTATGCCTGGCTGATGAT GAACAGGACGCGTTGACGCAGCTTGCCGCCGTTCTCGCCGTCGGCAGTCAGGCGCTATGG TCAGACGACGCCTTCCACCGCGATCTGGCGAAACGTCTCCCCGCCGCCGTCGCGGCGCGT GTCCAGTTTGCGAAAGCGGAAACGCTGATGGCGCAGCCGTTTGACGCGGTGATTTTCCAC GGCGACTCCGACAAGCTGCGAACCGTGTGCGAAGCCGTCGCCGCCCGCGAAGGCGCGATA GTGTCGGTACAGGGGTTCGCCCGCGGCGAAAGCAATATGCTGCTGGAACGGCTCTATATT GAACGTTCGCTGAGCGTAAACACTGCCGCCGCTGGCGGTAATGCCAGCCTGATGACAATT GGCTAAATGGCTATTAGCACACCGATGTTGGTGACATTCTGTGTCTATATTTTTGGCATG ATATTGATTGGGTTTATCGCCTGGCGCTCAACCAAAAACTTTGATGACTATATTCTTGGC GGTCGCAGCCTGGGGCCGTTTGTTACGGCTTTATCAGCCGGCGCGTCGGATATGAGCGGC TGGCTGTTAATGGGGCTGCCTGGCGCTATCTTTCTGTCGGGGATCTCTGAAAGCTGGATC GCCATTGGCCTGACGTTAGGCGCATGGATTAACTGGAAGCTGGTGGCCGGGCGCCTGCGC GTGCATACCGAATTTAACAATAACGCGCTCACGCTGCCGGACTATTTTACCGGTCGGTTT GAGGATAAGAGCCGAGTCCTGCGTATTATTTCCGCGCTGGTCATTCTGCTGTTTTTCACT ATCTATTGCGCATCAGGTATTGTCGCTGGGGCACGACTGTTCGAAAGCACCTTCGGTATG AGCTATGAAACCGCACTGTGGGCGGGGGCCGCGGCAACCATTATTTATACCTTTATCGGC GGGTTTCTTGCCGTTAGCTGGACGGATACCGTTCAGGCCAGCCTGATGATTTTTGCGTTA ATCCTGACGCCGGTGATGGTTATTGTCGGCGTAGGCGGTTTTAGCGAGTCGCTGGAAGTG ATCAAGCAAAAGAGCATCGAGAATGTCGACATGCTCAAGGGGCTGAATTTTGTCGCTATT ATTTCTCTGATGGGCTGGGGGCTGGGTTACTTCGGTCAGCCGCATATCCTGGCGCGCTTT ATGGCGGCGGATTCCCATCACAGTATTGTTCATGCGCGTCGTATCAGTATGACCTGGATG ATTCTGTGTCTGGCGGGCGCGGTGGCGGTGGGCTTCTTTGGCATTGCGTACTTTAACAAT AACCCCGCGCTGGCCGGGGCGGTGAACCAAAACTCAGAACGCGTATTTATTGAACTGGCG CAGATCCTGTTTAACCCGTGGATTGCCGGTGTTCTGCTGTCTGCTATCCTGGCGGCGGTG ATGTCGACGTTGAGCTGTCAGTTGCTGGTATGCTCCAGCGCGATTACGGAAGATTTATAT AAGGCTTTTCTGCGTAAAAGCGCCAGCCAGCAAGAGCTGGTATGGGTAGGGCGAGTGATG GTGCTGGTGGTAGCGCTGATCGCCATTGCGCTGGCGGCGAATCCTGATAACCGTGTGCTG GGGCTGGTGAGCTACGCCTGGGCTGGATTCGGCGCGGCATTTGGACCTGTTGTCCTGTTT TCTGTGATGTGGTCGCGTATGACACGTAACGGCGCGCTGGCGGGAATGATTATTGGCGCG GTGACGGTTATCGTCTGGAAACAATATGGCTGGCTGGATCTGTATGAGATTATCCCTGGC TTCATTTTCGGCAGCCTGGGGATCGTAATCTTTAGCCTGCTTGGCAAAGCGCCGACAGCA ACGATGCAGGAACGCTTTGCAAAAGCGGACGCGCATTATCATTCCGCGCCGCCGTCGAAG CTACAGGCGGAATAAATGGCGGGTAAACTGCGGCGTTGGCTGCGTGAAGCCGCGGTTTTT CTGGCGCTCCTCATCGCGATAATGGTGGTCATGGACGTCTGGCGCGCGCCGCAGGCGCCT CCGGCGTTTGCCGCGACACCATTACATACGCTGACGGGAGAGTCGACAACTCTGGCGACC TTGAGCGAGGAACGCCCCGTACTGCTCTATTTTTGGGCCAGCTGGTGCGGGGTATGCCGC TTTACCACGCCTGCGGTCGCTCACCTGGCGGCGGAAGGGGAAAACGTCATGACCGTTGCG CTCCGCTCCGGCGGTGATGCTGAGGTTGCCCGCTGGCTGGCGCGCAAGGGCGTTGACTTC CCGGTCGTCAATGATGCTAACGGCGCCTTATCCGCTGGCTGGGAAATCAGCGTGACGCCA ACGCTGGTGGTGGTTTCACAAGGTCGGGTTGTGTTCACCACCAGCGGCTGGACCAGCTAT TGGGGCATGAAGCTTCGGCTGTGGTGGGCAAAAACGTTCTGAATGATGAAAAAAAGCGTC GCTATGCTGGCGGTTTGTATGCTGGCGCAAAGCCACCTTGCCATTGCTGCCGGTGCTCCT GCGCCTCAAGAGATCAACATTGTTTTACTGGGCACCAAAGGCGGGCCTTCTTTGCTCAAT ACAGCCAGACTACCGCAAGCGACGGCGCTCACTATCGGCGATAAGATATGGCTGATAGAT GCCGGCTACGGCGCCAGTCTGCAACTGGTGAAAAATGGCATTCCACTGCGCAACATCAAT ACTATTTTGCTCACCCATCTGCACAGCGACCACATACTGGATTATCCTTCCTTGCTGATG AATGCCTGGGCAAGTGGCCTGAAAGACCATACCATACAGGTTTATGGCCCGCCGGGAACC CAGGCGATGACGAAGGCTAGCTGGAAGGTCTTTGACAGGGATATCACGTTACGCATGGAA GAAGAGGGGAAACCCGATCCGCGCAACCTGGTTAAGGCGACCGATATCGGCCAGGGCGTC ATCTATAAAGATGAACTGGTCACAATAAGCGCGCTGAAAGTGCCTCATTCCCCTTTCCCG GACGGTGAAGCGTTTGCTTACCGTTTTGATACTCAGGGTAAGCGAATCGTCTTCTCTGGC GATACGTCCTGGTTTCCTCCGCTTGCAACGTTTGCCCAGGGGGCGGATATCCTGGTACAT GAGGCGGTACATGTCCCTTCGGTAGCAAAACTGGCTAATAGTATTGGCAACGGAAAAACG CTGGCTGAAGCGATTGCGTCGCATCACACCACGATTGAAGATGTCGGTAAGATTGCTCGC GAGGCCCACGTGAAAAAACTGGTGTTAAGTCATCTGGTGCCTGCGACGGTTGCGGATGAC GTCTGGCAACAGGAAGCCATGAAAAATTACCCGGGCCCTGTCATTGTCGGTCATGACAAT ATGACGATAAGCGTACCGTAAATGTCGCAACGCACAGAGAAAAAAATCGGGAAACGTTCG CAGGCCACCGGTGCAAAACGGCAGCTTATCTTAACCGCCGCGCTTGCCGTTTTTTCCCAG TATGGCATTCATGGCGCGCGTCTTGAACAGGTCGCCGAGCGGGCAGGCGTCTCCAAAACC AATCTGCTTTATTATTATCCCTCGAAAGAGGCGCTGTATGTCGCGGTAATGCGACAGATT CTGGATGTCTGGTTGGCGCCGCTCAAGGCGTTTCGCGCAGAATTTTCCCCTCTGGAGGCC ATCAAAGAGTATATCCGTCTCAAGCTGGAGGTTTCGCGTGATTATCCGCAGGCGTCGCGG CTCTTCTGCATGGAGATGCTGGCGGGCGCGCCGCTCTTAATGGATGAACTGACCGGCGAT CTAAAAGCGTTGATAGATGAAAAATCCGCGCTGATTGCCGGATGGGTGCACAGCGGGAAA CTCGCGCCCGTTTCTCCGCATCATTTGATCTTCATGATTTGGGCCGCCACGCAACATTAC GCCGATTTCGCCCCTCAGGTTGAAGCGGTAACCGGCGCGACGCTTCGCGATGAAGCCTTT TTCAACCAAACGGTCGAAAGCGTTCAGCGCATTATTATTGAAGGGATTCGCGTGCGTTAA ATGGCGAAACAACAACGGATGGGCTGGTGGTTTCTTTGCCTTGCATGTGTCGTGGTAATG GTTTGTACCGCGCAACGCATGGCGGGCCTGCACGCCTTGCAGATGCAGGCGACGGCCTCT GCTGCGGTGGTCAGCGCTCCCTCCTCGACAGATGACGGCTCGCCGGTCACTCCCTGCGAA TTAAGCGCCAAGTCGCTGCTGGCGGCGCCTCCAGTACTCTTTGAAGGTGCTATCCTTGCG CTTTATCTACTGCTTTCCTTACTGGCGCCTGTCCGGGTCATGCGCCTGCCGTTTTCGCCT CCACGGGCTATTTCGCCGCCCACATTACGGGTACATCTACGATTTTGTGTCTTCCGTGAA TGAATGATGATTTTATTCAGGCGGATACTGTTCTGCCTGTTATGGCTTTGGCTGCCCGTC TCCTGGGCGGCGGAAAGCGGCTGGCTGCGTTCGCCCGATAACGACCATGCCAGCATACGG CTACGTGCCGATACGTCCGCTAACAGTGAGACCCGGCTGTTGCTGGATGTCAAACTGGAA AACGGCTGGAAAACCTACTGGCGCGCGCCGGGGGAAGGGGGCGTGGCACCCTCTATCGCC TGGAAAGGCGACATGCCTGAGGTAAGCTGGTTCTGGCCAACCCCCTCGCGCTTTGATGTG GCGAATATCACCACCCAGGGATATCACGACGAGGTGACCTTTCCGATGATCGTGCGCGGT ACGCCGCCGGCGACCTTGCGCGGTGTGTTGACGTTATCAACCTGCAGCAATGTTTGTCTG TTGACCGATTACCCCTTTTCCGTGACGCCCACTGTGCAGAATGCCGATTTTGCCCATGAC TATGCGCGGGCGATGGGTAAAGTTCCGCTCCGCAGTGGGCTAACGGACTCGCTTGACGTT GGCTATCGCCCGGGAGAACTGGTGGTCACTGCTACGCGAGCGGCGGGCTGGTCATCGCCC GGGCTCTATCTTGACACCATAGATGACGTCGATTTTGCGAAGCCTCGCCTGCGCGTAGAG GGCGACAGGTTACAGGCGACGGTGCCGGTGACGGACAGTTGGGGCGAAAAGGCGCCCGAT TTGCGCGACAAATCGCTGACCCTCGTGTTAGCCGATGGCGCTATCGCCCAGGAGAGCACG CAAACCATTGGCGCTGCGCCAGCGCAAACGCCGGACAATGCGGCGCTACCTTTCTGGCAA GTTGTAATGATGGCGCTAATCGGCGGACTGATTCTTAATTTAATGCCCTGCGTACTGCCT GTTCTGGGCATGAAACTTGGCTCTATTTTATTGGTAGAGGAAAAAAGCCGCTCTCACATC AGGCGACAATTTTTGGCTTCGGTCGCCGGTATCATTGCGTCATTTATGGCGCTGGCGGCG TTTATGACCCTCCTTCGCCTGTCAAACCATGCGCTGGCCTGGGGAGTCCAGTTCCAGAAT GCATGGTTTATTGGTTTTATGGCGCTGGTGATGTTGTTGTTTAGCGCCAGCCTGTTCGGG CTTTTTGAGTTCAGGCTTCCCTCATCTATGACCACGAAACTGGCCACTTACGGCGGTAAC GGTATGTCGGGACATTTCTGGCAGGGGGCGTTCGCCACGCTGCTGGCGACGCCTTGTAGC GCGCCGTTTCTGGGCACGGCGGTCGCGGTGGCGCTCACGGCGTCGCTGCCGACGCTGTGG GGGCTGTTCCTTGCGCTTGGCCTGGGAATGAGCGCGCCGTGGCTACTGGTCGCGATACGA CCAGGGCTTGCGCTACGTTTACCGCGCCCCGGGCGTTGGATGAATGTCCTGCGCAGGATC CTCGGTCTGATGATGCTGGGGTCGGCTATCTGGCTGGCGACGTTACTCCTGCCGCATTTC GGCTTCACTGCGTCAAAGAGCGCGCAAGACACGGTTCAGTGGCAACCGTTGAGTGAACAG GCAATCCAGTCGGCGCTGGCGCAGCATAAGCGGGTATTTGTCGATGTCACTGCGGACTGG TGTATTACCTGTAAAGTGAATAAATACAACGTCCTGCAAAAAGAGGATGTGCAGGCCGCC TTGCAACAGCCGGATGTTGTGGCGCTGCGGGGAGACTGGACGCTGCCGTCCGATGCCATT ACAGATTTTCTGAAAACGCGCGGCCAGGTCGCCGTGCCGTTTAATCAGGTATATGGCCCC GGTTTGCCGGAAGGGGAGGCACTGCCCACTTTGCTGACCCGCGATGCGGTATTACAAACG TTGAAAAAAGCGAAAGGAATAACCCAATGAATGAAATACATGATTGTTTTACTGCTGGCG CTGTTTTCGACGCTGAGCATCGCGCAAGAAACCGCTCCTTTTACGCCGGATCAGGAAAAG CAGATTAAAAATCTGATCCATGCGGCGTTGTTTAACGATCCTGCCAGCCCGCGGATAGGC GCTAAACACCCTAAGCTGACGCTGGTGAACTTTACGGATTACAACTGCCCGTACTGCAAA CAGCTCGATCCGATGCTGGAAAAGATTGTGCAGAAATATCCTGACGTTGCGGTCATTATT AAACCGCTGCCATTCAAAGGAGAGAGTTCCATACTGGCGGCGCGTATTGCGCTGACCACC TGGCGCGATCATCCGCAACAGTTCCTCGCGCTACATGAAAAACTTATGCAAAAGCGCGGT TACCATACGGATGACAGTATTAAACAGGCCCAGCAGAAAGCAGGGGCGACGCCAGTGACG CTGGATGAAAAAAGCATGGAAACGATACGCACTAATTTGCAGTTGGCAAGACTGGTCGAC GTGCAAGGAACGCCAGCGACGATCATTGGCGACGAGCTGATTCCGGGCGCAGTGCCCTGG GATACGCTGGAAGCGGTGGTGAAAGAAAAACTGGCGGCTGCCAATGGCGGGTAAATGATT ACACATTCTTTCGGCATCGTTAATTATTTTGTATTATTTGGCTACCTCCTGGCCATGATG TTAGTCGGTGTCTATTTTTCCAGACGGCAAAAAACAGCAGACGATTATTTTCGCGGTGGT GGCCGGGTTCCTGGTTGGGCGGCTGGGGTCAGTGTATTTGCTACTACGTTAAGCTCAATT ACATTTATGTCAATTCCTGCCAAAGCGTTTACTTCCGACTGGACGTTTATCATTGGTCAG TATCTGGCTATCGCAATTTTACCGCTGGTTTTTTATTTCTATATTCCGTTTTTTCGGAAA TTGAAAGTCACATCAGCCTATGAATATCTCGAAGCACGGTTCGATGTGCGCTGCCGTCTG TTCGCCAGCATGTCATTTATGTTGTTTCATATTGGACGTATCGCCATTATCACTTTCCTC ACCGTGCTGGCCTTGCGCCCCTTCATCGCTATAGACCCGGTGATTTTGGTACTGTTGATT AGTGTGATGTGTATCATTTATACCTGGATGGGGGGGAATTGAATGGAAAGTCTATTAAAT CGTTTATATGACGCGTTAGGCCTGGATGCGCCAGAAGATGAGCCACTGCTTATCATTGAT GATGGGATACAGGTTTATTTTAATGAATCCGATCATACACTGGAAATGTGCTGTCCCTTT ATGCCACTGCCTGACGACACTCTGACTTTGCAGCATTTTTTACGTCTTAACTACGCCAGC GCCGTCACTATCGGCGCTGATGCAGACAATACTGCTTTAGTGGCGCTTTATCGCTTGCCG CAAACCAGTACCGAAGAAGAGGCGCTCACTGGTTTTGAATTATTCATTTCAAACGTGAAG CAATTGAAAGAGCATTATGCATAAATGAAATACGACCTTATTATTATCGGCAGCGGTTCG GTTGGCGCCGCCGCTGGTTATTACGCCACCCGCGCCGGGCTAAAGGTCCTGATGACCGAT GCGCATATGCCGCCTTATCAACAGGGCAGCCACCACGGCGATACCCGTCTTATCCGCCAC GCTTATGGTGAAGGCGAAAAATATGTCCCGCTGGTGCTTCGCGCCCAGACGCTTTGGGAT GAGCTCTCCACACACAATGAAGAGCCTATTTTTGTCCGCTCCGGCGTCGTCAACCTCGGC CCGGCCGATTCCGCTTTCTTAGCCAACGTCGCACGAAGCGCGCAACAGTGGCAATTGAAC GTCGAGCGCCTGGACGCGACGGCCCTCATGACGCGCTGGCCGGAAATTCGCGTGCCCGAT AATTATATCGGGCTGTTTGAAGCTGACTCCGGTTTCCTGCGCAGCGAATTAGCCATTACC ACATGGCTTCGTCTGGCCCGAGAGGCAGGCTGCGCACAGCTATTCAACAGCCCGGTAAGC CATATTCACCATGATGATAACGGTGTGACGATAGAGACGAGTGAAGGCTGCTACCACGCC AGCAAAGCGCTGATTAGCGCGGGCACCTGGGTCAAAACGCTGGTACCGGAGCTGCCCGTT CAGCCCGTACGTAAAGTTTTTGCCTGGTTTAAGGCGGATGGACGTTACAGCACTAAAAAC CGCTTTCCGGCCTTTACCGGCGAAATGCCCAACGGCGATCACTATTACGGTTTCCCGGCG GAGAACGACGAGTTAAAAATCGGCAAACACAATGGCGGGCAGCGAATACAGGCACCGGAA GAGCGCAAGCCCTTTGCCGCCGTTGCCAGCGATGGCGCGGAAGCATTTCCTTTCCTGCGT AACGTACTGCCGGGTATCGGCGGTTGTTTACATGGGGCGGCATGTACCTATGATAATTCG CCGGACGAGGATTTTATTATCGATACGCTGCCTGGCCATGAGAATACGCTTGTCATCACT GGACTCAGCGGACATGGTTTTAAATTCGCCCCGGTGTTAGGAGAAATCGCTGCGGATTTT GCGTTGGGAAAAACGCCCTCCTTTGATCTGACGCCGTTCCGGCTTTCCCGTTTTAGCCAA TAAATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAA AGCCTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCG GCTAAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGG GGGAATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTA CAGCGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACG TCAATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAA GAAGAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACT CAGCAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGA GATGCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACG CATAACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCA AAAGATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAAT ATTCATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGAT AAAACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCG CTTCTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTT AGTAAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTA TCCGTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGAT CAAATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGC AATAAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTG GGTGTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAAT GCCGAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGC TGGGTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCG CGCCAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTAT AAACTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAAT TGTAAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATT TCTTTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAG AAAATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACG GGCGGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTAT CAAAAACGAGTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATC ACATCTTGAATGAAACGATATATACTGGCTACCGCGATAGCGTCTCTTGTTGCAGCCCCG GCAATGGCGCTGGCCGCTGGCAGCAATATTCTCAGCGTACATATTCTCGATCAGCAAACA GGCAAACCAGCGCCCGGCGTGGAGGTGGTACTGGAGCAGAAAAAGGATAACGGATGGACG CAATTAAACACCGGGCATACCGACCAGGATGGACGAATTAAAGCACTGTGGCCCGAAAAA GCTGCCGCGCCGGGGGATTATCGCGTTATTTTTAAAACCGGCCAGTATTTTGAAAGTAAA AAACTGGACACGTTTTTCCCGGAGATTCCCGTCGAGTTTCATATCAGCAAAACGAATGAG CACTATCATGTGCCGCTGTTATTAAGTCAGTATGGTTATTCAACCTATCGCGGGAGCTAA ATGGCAAAGATTCTGGTGCTCTATTATTCCATGTACGGACACATTGAAACCATGGCGCAC GCGGTGGCGGAAGGGGCAAAGAAAGTCGACGGCGCAGAGGTCATTATAAAGCGTGTGCCA GAAACAATGCCGCCTGAAATCTTCGCAAAAGCTGGCGGTAAAACGCAAAACGCACCGGTT GCCACCCCACAGGAGCTGGCGGATTACGATGCCATTATTTTTGGTACGCCAACCCGGTTT GGCAATATGTCAGGCCAGATGCGTACCTTCCTGGACCAAACCGGCGGACTGTGGGCATCC GGCGCGCTATACGGCAAGCTCGGCGGCGTGTTCAGTTCTACCGGAACGGGCGGCGGCCAG GAGCAGACCATCACCTCGACCTGGACTACGCTTGCCCATCATGGGATGGTGATTGTCCCG ATAGGCTATTCCGCACAGGAACTGTTTGACGTCTCCCAGGTTCGCGGCGGTACGCCTTAC GGCGCAACGACTATCGCTGGAGGCGACGGTTCACGTCAACCAAGCCAGGAGGAACTCTCT ATCGCTCGCTATCAGGGGGAATACGTCGCCGGTCTGGCAGTCAAACTCAACGGCTAAATG GAGCCTCAACCCCCACGTCTTAAACCCGGAAAAATCCTTGACACTCTGGGTGCTATGCAA AAAAGCCTGACACGTGCCTCCCAGCGTATTGCGCAATATATTTTAGCCTTCCCCAGACAG GTGACACAGTCATCTATTGCCGATTTGTCGCGCGACACACAGGCCGGAGAAGCCACGGTT ATTCGCTTTTGTCGCACCCTGGGCTATAAAGGTTTTCAGGATTTTAAAATGGACCTGGCC ATTGAACTTGCCACTACCGAGTCTGATGACAGTAGTCCTCTACTGGATGCCGAAGTTAGC GAATCCGACGATGCCCACGCCATTGGTTTAAAATTGCAGAACACCATTAGTAATGTATTA TCTGAAACGCTAAATCTGCTTGATATGCAACAGGTTCTCGGTGTCGTGGACGCCCTACGT CACTGTCACTCAGTTTATATCTTTGGTGTGGGCTCATCGGGGATCACGGCGCTGGATATG AAACACAAGCTAATGCGTATTGGTTTACGGGGCGATGCGGTAAGCAATAACCATTTTATG TACATGCAGGCTACGCTATTAAAAGCAGGCGATGTCGCGATGGGTGTCAGTCACTCGGGC ACATCGCCAGAAACAGTGCATTCACTCCGATTGGCCCGACAGGCTGGCGCCACCACAGTC GCCATTACCCATAATCTGGGTTCTCCATTATGTGAAGAGGCCGATTTTTGCCTGATCAAT GGTAATCGGCAAGGAATGTTGCAGGGTGACTCGATCGGTACGAAAGCCGCGCAGCTTTTC GTCTTTGACCTGCTCTATACCCTTCTTGTACAGTCCTCGCCGGAACAGGCCCGAGAAAGC AAATTACGGACAATGAATGCCCTGGACATGACAAAATAAATGAAGAAACTGCCCGGCTTT ACGCAAGATTACTTACTCAGCAAGGCGACGACCCTGCCTGATAAAACACGCCTGGAGCGT GCCGTTGAACCGCTATGCGCGCGCCATCCCGGAGAGTGCGGCATTCTTGCGCTGGATAAC AGTCTGGACGCTTTTGCCGCCCGCTACCGCCTGACCGAAATGGCGGCGCGGACGCTGGAT GTGCAGTATTATATTTGGGAAGACGATATGTCCGGGCGGCTGCTCTTTTCGGTTCTGCTG TCGGCGGCGAAGCGCGGCGTTCATGTTCGTCTGCTGCTGGATGATAACAATACGCCTGGT CTGGATGATACGTTGCGCTTGCTGGATAGCCATCCTAATATCGAAGTTCGTCTGTTTAAT CCTTTCTCTTTTCGTACGCTACGCGCGCTGGGATATTTGACGGATTTTGCGCGGCTGAAT CGGCGGATGCACAATAAAAGTTACACTGCCGACGGCGTAGTGACGCTGGTCGGTGGGCGC AACATCGGCGATGCCTATTTCGGCGCTGGCGAGGAGCCGCTATTTTCCGATCTGGACGTG ATGGCCATTGGCCCGGTGGTCAATGATGTCGCCAATGATTTTGAACGTTACTGGCGCTGT AGTTCAGTGTCGACATTGCAGCAAGTATTATCCCTTTCTGAGCAGGAACTGACGCAGCGT ATCGAACTTCCCGAATCCTGGTATAACGATGAGATCACCCGCCGTTATCTGCATAAGCTG GAAACCAGCCAGTTTATGGCGGATCTCGATCGCGGAACGTTGCCGCTGATTTGGGCAAAA ACACGCTTGCTTAGCGATGACCCTTCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTT CTTCCGCAGCGATTATTTGACGTGATGGGGTCGCCGACGGAGCGTATCGACATTATTTCC GCTTACTTTGTCCCTACGCGCGCAGGCGTGGCGCAGTTGCTTAATCTGGTCAGGAAAGGT GTGAAGATCGCCATCTTAACTAACTCTCTGGCGGCCAACGATGTGGCGGTCGTTCACGCA GGGTACGCGCGCTGGCGCAAGAAATTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAA CCGACCCGCGAACATGAAACCGCCGTACATGATCGCGGACTCACCGGGAACTCAGGTTCC AGCTTACATGCTAAAACGTTCAGTATTGATGGTAGTAAGGTGTTTATCGGGTCGCTTAAT TTTGATCCCCGTTCAACGCTTTTAAATACCGAAATGGGCTTTGTCATTGAAAGTGAAACG CTGGCGACGCTTATTCATAAGCGTTTTACGCAGAGCCAACGCGATGCGGCCTGGCAACTG CGGCTGGATCGCTGGGGACGAATTAACTGGATCGATCGTCAGCAAGAAGAGGAAAAGGTG TTAAAGAAAGAACCCGCTACGCGTTTCTGGCAGCGAGTTCTGGTACGGTTGGCGGCAATT TTACCTGTGGAATGGTTGCTGTGAATGCCAACTCAAGAAGCAAAAGCGCACCGCGTCGGC GAATGGGCAAGCCTGCGTAATACGTCGCCGGAAATTGCCGAAGCCATTTTTGAAGTCGCT CACTATGACGAGAAACTGGCAGAAAAAATATGGGAAGAAGGTAGCGATGAGGTGCTGATC AAAGCCTTTGAGAAAACGGACAAAGACTCGCTCTTCTGGGGCGAACAAGTCATCGAACGT AAGAACGTATAAATGTATCCCGTTGACCTGCATATGCATACCGTCGCCAGCACTCATGCC TACAGTACTCTGAGCGATTATATCGCGGAAGCCAAACGCAAAGGCATTAAACTTTTTGCG ATTACCGATCATGGTCCGGACATGGAAGATGCGCCGCATCACTGGCATTTTATTAACATG CGCATCTGGCCGCGTCTGGTTGACGGCGTGGGGATACTGCGTGGCATTGAGGCGAATATC AAGAATATTAACGGTGAAATTGATTGTTCCGGAAAGATGTTCGACTCGCTGGATCTGATT ATCGCAGGCTTTCATGAGCCCGTTTTTGCGCCGCATGATAAAGAAACCAATACTCAGGCG ATGATCGCGACCATCGCCAGCGGCAAGGTGCATATAATTAGTCACCCCGGAAATCCAAAG TATCCAGTGGAGGTTAAAGCCATCGCGCAGGCGGCGGCGAAACACCATGTAGCGCTGGAA ATCAACAACTCTTCTTTTCTGCATTCGCGTAAAGGAAGCGAAGATAATTGCCGCGCGGTC GCTGCCGCCGTACGCGATGCGGGAGGCTGGGTAGCGTTAGGCTCTGATTCCCATACGGCC TTTACGCTTGGCGATTTCACCGAATGCCGGAAAATTCTGGATGCGGTGAATTTTCCGGAA GATCGAATCCTGAACGTCTCTCCGCAGCGCTTACTGGCCTTTCTCGAATCACGCGGTATG GCGCCTGTACCGGAATTTGCCGAACTTTAAATGAATGAGTTTTCAATCCTGTGCCGTGTG CTGGGATCGTTGTTTTACCGCCAACCGCAAGATCCTTTACTGGTTCCGCTGTTTACGTTA ATCCGTGAAGGTAAACTGGCGGCAAACTGGCCGCTGGAGCAGGATGACATGCTGGCGCGT TTACAGAAAAGCTGCGATATCACGCAGATTTCCACTGATTACAATGCGTTATTTGTTGGG GAAGAGTGCGCGGTAGCGCCATACCGCAGTGCGTGGGTCGAAGGCGCGGAAGAGTCTGAG GTGCGCGCTTTTTTAACGTCGCGAGGGATGCCGCTGGCCGATACGCCTGCCGATCACATT GGCACTTTATTGCTCGCGGCCTCCTGGCTGGAAGATCAGTCTGCCGAAGATGAAAGTGAA GCGCTGGAAACCTTATTTGCCGATTATCTGCTTCCCTGGTGCAATACCTTCCTCGGTAAA GTTGAAGCCCATGCCGTTACGCCATTCTGGCGCACTCTGGCGCCGCTAACGCGTGATGCG ATAGGGGCCATGTGGGATGAACTTCAGGAAGAAGATGAAGAATAAATGATGCGCGCCATG AACATACTTCTTTCTATTGCTATCACTACGGGCATCCTTTCTGGAATATGGGGATGGGTG GCCGTCTCCCTGGGGTTACTAAGCTGGGCCGGTTTTTTAGGCTGTACGGCTTATTTCGCC TGTCCGCAGGGCGGCTTTAAGGGATTGTTGATTTCCGCCTGTACGCTGTTAAGCGGTATG GTGTGGGCGCTGGTCATTATTCACGGTAGCGCGTTGGCGCCGCATCTGGAAATTGTCAGT TACGTGTTGACGGGGATCGTGGCATTCCTGATGTGTATCCAGGCAAAGCAGCTATTGCTT TCTTTTGTTCCGGGAACATTTATCGGCGCCTGCGCGACATTTGCAGGGCAGGGTGACTGG CGGTTGGTATTACCGTCGCTGGCGCTGGGGCTAATCTTTGGCTATGCCATGAAAAATAGT GGGCTATGGCTGGCATCACGCCGCGAGCAACATTCAGCGAATACGGCGGTCACAAAATAA ATGAAAAAAAACCTGCTGGGATTCACCCTCGCATCCTTGTTATTCACGACCGGTTCCGCC GTGGCGGCGGAGTATAAAATTGATAAAGAAGGCCAACATGCGTTCGTCAATTTCCGCATC CAGCATCTGGGCTACAGCTGGCTATACGGCACCTTTAAAGATTTCGACGGCACGTTCACT TTTGACGAAAAAAATCCGTCAGCAGACAAAGTGAATGTGACCATTAACACCAATAGCGTC GACACTAACCATGCCGAACGTGACAAACACCTGCGTAGCGCGGAGTTTCTTAATGTTGCG AAATTCCCGCAGGCAACCTTCACCTCTACCAGCGTGAAAAAAGAGGGCGATGAACTGGAT ATTACCGGCAATCTGACGCTCAATGGCGTGACTAAACCGGTGACGCTGGAAGCGAAGCTG ATGGGCCAGGGCGACGATCCGTGGGGCGGTAAGCGCGCGGGCTTTGAGGCCGAAGGAAAA ATTAAGCTGAAAGATTTCAATATAACTACCGATCTCGGCCCAGCCTCACAAGAGGTGGAG CTTATCATCTCAGTAGAAGGCGTTCAGCAGAAGTAAATGTTACTGATGATGGCGCTGATC GTGCGTATTATCTGGCGGCTTTATTCTCCGCCGCCCGTTGCGTTGACCAGCTATTCCCGT TTAACGCGCATTGGCGCCGCCGCGGGTCATATCCTTCTGTATCTCCTGCTCTTTGCGATA ATCATTAGCGGCTACCTGATTTCCACCGCCGACGGTAAACCGATTAGCGTCTTTGGCTGG TTTGAGATTCCGGCCACGCTTACGGACGCGGGCGCGCAGGCTGACATCGCCGGAACACTG CATCTGTGGTTTGCCTGGTCGCTGGTCATTATCTCGCTCTCGCATGGGGTTATGGCGCTA AAACACCATTTCATCGATAAAGACGACACACTGAAACGTATGACAGGAATGTCGTCATCT GACTATGGAGCTCAAAAATGAATGGTTAAGTTATCAATGACGCTGCGCCTGACAATTTCT TTTATCGCCATACTTATCCTCGCCTGTACCGGCATTAGCTGGACGCTCTATAACGCGCTG AGCAAAGAATTAACGTATCGGGATGATATGACGCTAATAAATCGGGCGGCGCAAATGCAG CAACTGTTACTGGATGGCGCCAGGCCGGAAAATCTGCCGCTCTATTTCAATCGGATGGTG GATACGAAGCAGGATATCTTATTGATCCACTCAGCAACAGGCCATAATGTTGCGATTAAT CATAGCGGCATCCCCGACCAACGCTTTAACGAGATTCCGCTGGCTAAAAACATCACCCGC GAAACCTTATTTCGCCAGGCGGTACAAGGCACGGAGCTGACCGCGGTACGAGTAAACGCC AGAAGCGGCGATAACCCGCTGACCCTTACTATTGCCAGGCTGGCGACGGAAAGGCGGCAA ATGCTGGCGCAATATCGCCGCAACAGTTTGCTGATTAGCCTTATCGCGATCCTCGTCTGT TCGGCGCTCAGTCCATTAGTCATCAGAAACGGGCTGCGGGCCATTACGTCGCTCAGCCGA CTCACCGCGGCGACAGATAGCGGCACACTTCGCCAGCCGCTGGCGGAACAGGCGTTACCC GTCGAGCTCAGGCCGCTTGGGCAAGCGCTAAATACCATGCGCCAGAAGCTTTCCGACGAT TTTGAACGCCTGAACCAATTTGCCGACGATCTGGCGCATGAGCTGCGCACGCCGGTTAAT ATTTTACTGGGGAAGAATCAGGTTATGCTGAGTCAGGAACGCAGCGCCGAAGAGTATCAA CAAGCCCTTGTCGATAATATTGAAGAGCTGGAGGGACTGTCGCGACTGACAGAAAATATT CTCTTTCTGGCACGCGCGGAGCACCAGAATATAGCGGTAAAAAAACAGCCTGTTTCGCTC AATGCGCTGGTCGAAAATATGCTGGATTATCTTAGCCCCCTTGCCGAAGAGAAGCACATC TGTTTTATAAATCAATGTCAGGGAACGGTATGGGCTGACGAAATATTATTACAAAGAGTG CTCTCAAACCTGCTGACGAATGCCATCCGTTATTCTGATGAAAACGCCGTGATACGTATT GAAAGCGCTTATGATGATAACGTTGCAGAAATTCGGGTCGCTAATCCGGGCAGCCCCACC GCCGATGCGGATAAGCTTTTCCGGCGTTTTTGGCGAGGAGATAATGCCCGCTACACTGCC GGTTTCGGCCTGGGGTTATCGTTAGTTAACGCGATTGCCCTATTGCACGGTGGCTCGGCA TCTTACCGCTATGCCGATGAACATAATATCTTTTCGGTTCGTCTGCCTGATAGCGGTGAT AGCTAAGTGATATGTCTCAAAGTCCAGGGCGGCATTGGTGAAATTTTTACGGTGACGCAG CAGGCGGATAAATTCTTTCCGGCTACGCAGTTCCACTGGAGCTGGACGGAAAGCACAGTA CCTGTATTGATGATTGGTTTTCTGTTTGCCAATATTCAGCAATTTACTGCCAGTCAGGAT GTGGTCCAACGCTATATCGTGACTGACTCCATAGAGGAAACGAAGAAAACATTACTTACA AATGCCAAACTGGTTGCTGTGATCCCTGTTTTCTTTTTTGCTATCGGCTCGGCATTATTT GTCTACTATCAGCAACATCCACAATTATTACCGGCGGGATTCAACACTGGCGGCATTTTG CCCTTATTCGTGGTCACCGAAATGCCAGTCGGCATTGCAGGGTTGATAATCTCCGCTATT TTCGCTGCCGCGCAGTCCAGCATCTCCAGCAGCTTAAACAGCATTTCCAGTTGTTTTAAT TCCGATATCTATCAGCGTTTGAGTCATAAAAAAGGAACGCCAGAAAACCGTATGAAAATA GCTAAGTTAGTTATTCTGGTCGCGGGCCTGATAAGTAGCGCGGCCTCGGTATGGCTGGTC ATGGCCGATGAATCAGAAATCTGGGATGCATTTAATAGTCTGATAGGTCTGATGGGAGGG CCAATGACCGGTCTGTTCATGCTGGGCATTTTCTTTAAACGAGCAAATGCCGGGAGTGCG GTTTTAGGAATTATTATCAGCGTCATTACCGTGCTGGGCACACGCTATGCCACTGACCTT AACTTCTTCTTTTATGGGGTCATTGGCTCGCTAAGCGTGGTGATCAGCGGCGTTATTTTC GCCCCGTTATTTGCCCCGGCACCGCCATTGACGCTGGATGAAAAACCTGAACCAAAGGTG ACATTATGAATGAAAATCAACAGATATCTTCTGGGTATGGTTTCGTTTATAGCATTTTCA TCATATCTACAAGCGGCAACCCTTGATTATCGGCATGAATATGCTGATAGAACCAGAATT AATAAAGACCGTATTGCTATAATTGAAAAGCTTCCTAACGGCATTGGTTTTTATGTCGAT GCCAGCGTTAAATCGGGAGGAGTAGATGGTGAGCAGGATAAGCATTTAAGCGATCTCGTC GCAAACGCTATAGAACTGGGCGTAAGTTATAATTATAAAGTTACGGACCATTTTGTTTTG CAGCCTGGATTTATATTTGAAAGCGGTCCAGACACTTCAATTTATAAGCCTTATTTAAGG GCGCAATATAATTTTGATTCTGGTGTTTATATGGCTGGTCGTTACCGTTATGACTATGCA AGGAAGACAGCTAACTATAATGATGATGAGAAAACGAATAGATTTGATACTTATATAGGT TATGTTTTTGATGAGTTGAAATTGGAATATAAATTTACCTGGATGGATAGCGATCAAATT AAATTTGATAACAAAAAAACAAACTATGAACATAATGTGGCTTTAGCCTGGAAACTGAAT AAGTCATTTACACCATACGTTGAGGTCGGAAATGTAGCGGTGAGAAATAATACCGATGAG AGACAGACCCGTTATCGCGTTGGATTACAATACCACTTTTGAATGACGAAATACGGTGTT ATAGGTACAGGTTATTTTGGCGCTGAACTGGCGCGATTTATGTCTAAGGTTGAAGGGGCG AAAATCACTGCGATTTACGATCCGGTAAATGCGGCTCCGATAGCGAAAGAGCTGAACTGT GTCGCCACTTCAACGATGGAGGCGCTTTGTACCCATCCTGATGTGGATTGCGTAATTATT GCTTCACCAAATTACTTACATAAAGCGCCGGTCATTGCGGCGGCTAAAGCGGGTAAACAC GTGTTTTGTGAAAAACCTATCGCCTTAAATTACCAGGATTGTAAGGATATGGTTGATGCC TGCAAAGAAGCTGGTGTTACCTTTATGGCGGGTCACGTTATGAACTTTTTTCACGGGGTT CGCCACGCTAAAGCGCTCATCAAAGCCGGTGAAATCGGTGAAGTTACACAAGTTCACACT AAACGTAATGGTTTTGAAGACGTGCAGGATGAGATCTCATGGAAGAAGATTCGCGCAAAG TCAGGTGGGCATCTGTACCATCACATTCACGAGCTAGATTGTACACTGTTCATCATGGAT GAAACCCCATCCCTGGTTTCAATGGCGGCGGGGAATGTTGCGCACAAAGGTGAAAAATTT GGTGATGAAGATGATGTTGTCCTAATCACCCTTGAGTTTGAAAGCGGTCGTTTCGCGACA CTTCAGTGGGGATCATCGTTCCACTACCCTGAGCACTATGTATTAATTGAGGGCACGACA GGTGCAATTCTCATTGATATGCAAAACACGGCTGGTTATCTAATAAAAGCGGGCAAAAAA ACACACTTTCTTGTGCATGAAAGCCAGGCGGAGGATGATGATCGTCGCAACGGTAACATA TCCAGCGAGATGGATGGCGCAATCGCTTATGGTAAACCCGGTAAACGTACGCCGATGTGG CTCTCATCAATTATGAAACTGGAGATGCAGTACTTGCATGATGTGATAAACGGTCTGGAG CCAGGCGAGGAGTTTGCTAAATTGCTAACGGGAGAAGCGGCGACAAATGCCATTGCTACC GCTGATGCTGCGACGCTTTCTTCAAACGAGGGGCGCAAAGTTAAACTCACTGAAATTCTT GGCTAAATGACATCACGTCTTCAGGTCATACAGGGTGATATCACTCAACTTAGCGTCGAT GCGATTGTGAATGCCGCTAACGCATCATTAATGGGCGGCGGTGGCGTAGACGGCGCAATT CATCGCGCGGCGGGGCCGGCATTGCTGGACGCCTGTAAACTCATCCGTCAGCAACAGGGC GAATGTCAGACGGGACATGCGGTTATCACGCCTGCTGGCAAGCTTTCGGCAAAGGCGGTT ATTCACACAGTGGGGCCCGTCTGGCGAGGCGGCGAACACCAGGAAGCTGAGCTACTCGAA GAGGCATACCGGAATTGTTTGCTGCTTGCCGAGGCGAATCACTTTCGTTCCATCGCTTTT CCGGCAATCAGTACCGGCGTTTATGGCTATCCACGCGCCCAGGCCGCTGAAGTCGCCGTC AGGACGGTTTCAGATTTTATTACCCGTTACGCTCTGCCTGAACAGGTATACTTTGTCTGT TATGATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAGGCGACGACCCT GCCTGA >real_data_2 ATGAAAAAATCATTACTCGCTGTTGCTGTGGCAGGGGCTGTTTTGTTGTCATCCGCCGTA CAGGCGCAGACAACGCCGGAAGGTTATCAATTACAACAGGTGCTGATGATGAGCCGCCAT AATCTGCGGGCGCCGCTGGCGAATAATGGCAACGTACTGGCGCAGTCGACGCCGAACGCC TGGCCGGCGTGGGACGTTCCCGGCGGGCAACTGACGACGAAAGGCGGCGTGCTGGAAGTC TATATGGGACACTACACACGTGAATGGCTGGTCGCGCAGGGGCTGATACCGTCGGGAGAA TGTCCGGCGCCCGACACGGTATATGCCTATGCGAATAGTTTGCAGCGCACCGTCGCCACC GCGCAATTTTTCATTACCAGCGCTTTCCCCGGCTGTGATATTCCTGTTCATCATCAGGAA AAAATGGGCACTATGGACCCTACCTTCAATCCGGTGATTACCGATGATTCCGCCGCGTTC CGGCAACAGGCCGTACAGGCGATGGAAAAGGCGCGTAGTCAGCTACATCTTGATGAGAGT TATAAACTGCTTGAGCAGATAACGCATTATCAGGACTCGCCGTCCTGCAAAGAGAAGCAT CAGTGTTCGCTAATCGACGCGAAAGATACCTTCAGCGCGAACTATCAGCAAGAGCCTGGC GTGCAGGGGCCGCTGAAAGTAGGGAACTCGCTGGTGGATGCGTTTACCCTGCAATATTAC GAAGGCTTTCCGATGGATCAGGTCGCTTGGGGCGGGATCCACACCGATCGGCAGTGGAAG GTGCTGTCAAAACTGAAAAACGGCTACCAGGACAGCCTGTTTACCTCACCCACGGTGGCG CGCAATGTCGCTGCGCCGCTGGTAAAATATATCGATAAGGTGCTGGTTGCCGAGCGCGTT AGCGCGCCGAAGGTTACCGTGCTGGTGGGGCATGATTCCAATATCGCGTCGCTGCTGACG GCGCTGGATTTTAAACCCTATCAGCTCCATGACCAGTATGAGAGAACGCCGATTGGTGGT CAGCTTGTCTTCCAACGCTGGCATGACGGTAACGCTAACCGGGATTTGATGAAAATCGAG TATGTCTACCAGAGCGCCCGGCAGTTACGTAATGCGGAAGCGTTAACGCTCAAATCGCCT GCGCAAAGGGTAACGCTGGAACTGAAAGGATGTCCGGTGGATGCGAACGGCTTCTGTCCG CTGGATAAGTTCGATAACGTCATGAACACTGCTGCAAAATAGATGGAAAAGAATAATGAA GTCATTCAGACCCATCCGCTTGTAGGATGGGACATCAGCACCGTCGATAGCTATGATGCG CTGATGCTGCGTTTACACTACCAGACCCCAAATCGTCCGGAACCGGAAGGGACTGAAGTT GGTCAAACGCTCTGGTTAACGACAGATGTAGCCAGGCAATTTATTTCAATATTAGAAGCC GGCATCGCCAAAATAGAATCAGGCGATTACCAGGAAAACGAGTATCGTCACCATTAGATG GAACTTAAGGATTATTACGCCATTATGGGCGTGAAACCGACGGACGATCTCAAGACGATT AAGACCGCCTATCGCCGACTGGCCCGCAAGTACCATCCAGATGTCAGCAAAGAACCCGAT GCCGAAGCCCGTTTCAAAGAGGTTGCTGAAGCATGGGAAGTGCTGAGTGATGAGCAACGG CGCGCCGAGTATGACCAGTTATGGCAACACCGTAACGATCCACAATTTAATCGCCAGTTC CAGCAACACGAAGGCCAGCCGTATAACGCCGAAGATTTTGATGATATTTTCTCGTCTATT TTTGGTCAGCACGGTCGTCATTCGCACCACCGCCACGCCGCACGCGGTCATGATATCGAA ATTGAAGTGGCGGTATTCCTGGAAGAAACGCTGGAAGAGCACCAGCGTACGATTAGCTAT TCCGTCCCCGTTTATAACGCGTTCGGCCTGGTGGAGCGGGAAATTCCCAAAACATTGAAT GTGAAAATCCCGGCTGGCGTCAGCAACGGGCAACGAATCAGACTGAAAGGCCAGGGCACG CCGGGGGAAAACGGCGGACCTAATGGCGATTTATGGCTCGTTATCCATATTGCCCCGCAT CCGCTCTTTGATATCGTCAATCAGGATCTGGAAGTCGTCCTTCCGCTTGCCCCATGGGAG GCGGCGCTCGGCGCTAAGGTGTCTGTGCCAACGCTTAAAGAGCGTATTTTGCTGACCATT CCCCCCGGCAGCCAGGCAGGTCAGCGGCTGCGTATCAAAGGAAAAGGATTAGCCAGTAAA AAGCACACTGGCGATCTCTATGCCATCATCAAAATCGTTATGCCGCCGAAACCTGACGAG AAAACAGCTGCCCTGTGGCAACAACTGGCGGACGCGCAGTCGTCCTTTGACCCACGCCAG CAATGGGGGAAAGCATAAATGGCTAACATCACTGTCACCTTTACCATCACCGAATTTTGT TTGCACACCGGCGTGACGGAAGAGGAGCTAAACGAAATCGTCGGACTTGGCGTAATTGAG CCTTACGAAGACGATAACGCCGACTGGCAATTCGACGATCGCGCAGCGAGCGTGGTACAA CGCGCGCTACGCTTACGCGAGGAGCTGGCGCTCGACTGGCCAGGGATCGCGGTCGCGTTA ACGCTGCTGGAAGAGAATTCACGGCTGCGCGAAGAAAACCGGTTACTGCTGCAACGCCTT TCTCGCTTTATCTCGCATCCCTAAATGTCATCTTGTTGGAGATTTACGGATTCGCTAACA AGCCTATGGCATACTGCGTTGATGAAGATTTTATTGATTGAAGATAACCAGAAAACCATT GAGTGGGTACGTCAGGGACTCACGGAGGCAGGCTATGTGGTTGATTATGCCTGTGATGGA CGAGACGGATTACACCTAGCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATG CTGCCGGGGCTTGATGGATGGCAGGTTTTACGCGCGTTGCGCACTGCATATCAGCCCCCT GTTATTTGCCTGACGGCGCGCGACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGC GCTAATGATTACCTTGTTAAGCCTTTTTCCTTCGCCGAACTGCTGGCCCGGGTGAGAGCT CAACTCAGACAGCATGTCCCGGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGAT GCCACAAAGCAATCGGTGTTACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTC CTGCTCCTCTGGTTACTGGCGTCCCGGGCAGGGGAAATCGTGCCCCGAACCGCGATCGCC AGCGAAGTTTGGGGAATTAACTTTGATAGTGAAACCAACACCGTTGATGTCGCGATTCGT CGGCTGCGCGCCAAAGTAGACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCAGGGG ATGGGTTATCGATTACAGGCGGAAACGTCGCAGAATGGTTAAATGAAAAACAAATTGTTA TTTATGATGTTGGCAATACTGGGTGCGCCTGGGATTGCAACCGCGACAAATTATGATCTG GCTCGTTCAGAGGATAATTTTGCGGTAAATGAATTAAGCAAGTCTTCATTTAATCAGGCG GCCATTATTGGTGAAGTCGGCACGGATAATAGTGCCAGAGTACGCCAGGAAGGATCAAAA CTATTGTCCGTTGTTTCACAAGAAGGAGAAAATAATCGGGCGAAAGTCGACCAGGCAGGG AATTATAACTTTGCGTATATTGAGCAAACGGGCAATGCCAACGATGCCAGTATATCGCAA AGCGCTTACGGTGATAGTGCGGCTATTATCCAGAAAGGTTCTGGAAATAAGGCCAATATT ACCCAGTACGGTGCGCAGAAAACAGCAGTTGTAGTGCAGAAACAGTCGCATATGGCTATT CGCGTCACCCAAGGCTAAATGCATACTTTATTGCTCCTTGCCGCACTTTCAAATGAGATT ACGTTTACCACGACTCAGCAAGGCGATATTTACACGGTGATCCCTCAGGTCACAGTAAAC GAACCCTGCGTCTGTCTGGTGCAAATTCTCTCTGTGCGCGACGGCGTCGGGGGAGAAAGC CATACACAGCAAAAACAAACGCTATCTTTACCTGCTAATCAACCGATTGAGTTGGCTCGT CTTAGTGTAAATATATCTTCAGAGGACTCGGTTAAAATTATTGTTACTGTTTCGGACGGA CAATCACTGCATTTATCACAACAATGGCCGCCTTCTGCACAGTAGATGTTTAATGAAGTC CATAGTAGTCATGGTCACACACTATTGTTGATCACAAAGCCATCTCTGCAAGCTACGGCA TTATTGCAACATTTAAAGCAATCGCTGGCCATAACCGGACAACTGCATAATATTCAACGT TCTCTGGAAGATATCTCAGCCGGTTGCATTGTTTTAATGCATATGATGGAAGCGGATAAG AAGCTTATCCACTATTGGCAGGATAATTTAAGCCGCAAACACAATAATATAAAAACATTA TTGTTAAATACCCCTGACGATTATCCCTACCGTGAAATTCAAAACTGGCCTCATATTAAC GGCGTGTTTTACGCCACTGAAGACCAGGAACACGTGGTCCGCGGATTACAGGGTATTCTG CGGGGCGAATGCTATTTTTCACAAAAATTAGCCAGTTACCTGATTACACACTCAGGAAAT TACCGCTACAACAGCACCGAGTCCGCATTACTCACTCATCGCGAAAAAGAGATCCTCAAT AAGTTACGTATTGGTGCCTCTAATAATGAAATCGCCAGGCCGCTATTTATCAGCGAGAAT ACGGTTAAGACACATCTTTATAATCTTTTCAAAAAGATACCTGTCAAAAATCGCACCCAG GCAGTTTCATGAATGAAACGCTATCTGACCTGGATTGTAGCAGCAGAGTTACTGTTCGCT ACCGGAAACCTCCATGCCAATGAAGTTGAAGTCGAGGTTCCCGGATTGTTAACCGACCAT ACCGTCTCTTCCATAGGACATGAATTCTATCGTGCATTCAGCGACAAATGGGAAAGCGAA TACACCGGCAACCTGACCATTAATGAAAGACCCAGTGCGCGTTGGGGAAGCTGGATCACC ATAACGGTAAACCAGGACGTTATTTTCCAGACCTTTTTATTTCCAATGAAAAGAGACTTC GAGAAAACCGTCGTCTTCGCATTAGCGCAAACAGAGGAAGCATTAAATCGCCGACAAATA GATCAAACGCTCTTAAGTACGAGTGATTTAGCGCGTGATGAATTCTAAATGCGTGTTAAA CATGCAGTAGTGCTGCTCATGCTTTTTTCGCCATTAACCTGGGCTCGAAATATGACGTTC CAGTTCCGTAATCCTAACTTTGGTGGAAACCCCAATAACGGTTCCCTTTTATTGAATAGC GCCCAGGCGCAAAATTCATATAAAGACCCCGCTTATGATAACGATCTTGGTATCGAGACC CCCTCAGCGTTGGATAACTTTACGCAGGCTATTCAATCGCAAATTCTGGGCGGCTTGTTG ACCAATATTAATACCGGAAAACCAGGACGTATGGTGACCAATGATCTTATTATCGATATC GCTAATCGCGACGGACAGCTCCAGCTCAACGTCACGGACAGAAAACCGGGAAGAACCTCG ACCATCGAAGTGTCAGGTTTACAAACTCAGTCAACCGATTTTTAAATGCCGCGCTTACTT ATTTTGGTTGCCGTTTTATCGTTGAGCGGATGCTTAACTGCCCCGCCGAAACAAGCTGCG AAACCGACATTAATGCCCCCCGCACAAAGTTACAAAGATTTGACGCACTTACCTGCTCCC ACCGGTAAGATCTTTGTTTCGGTATATAACATTCAGGATGAAACGGGCCAATTTAAACCT TACCCGGCAAGTAACTTTTCCACGGCTGTGCCGCAGAGCGCCACCGCTATGTTGGTCACC GCGCTGAAAGATTCGCGCTCGTTTATCCCACTAGAACGACAAGGCTTACAGAATCTTTTG AATGAACGGAAAATTATTCCCGCAGCCCAGGAAAACGGCACCGTGGCGATGAATAACCGT ATCCCGCTTCAGTCGTTGACGGCGGCAAATATTATGGTGGAAGGTTCTATTATTGGTTAT GAAAGTAACGTCAAATCCGCCGGGGTCGGCGCAAGATATTTCGGTATTGGCGCCGATACG CAGTATCAGCTGGATCAGACTGCTGTCAACCTGCGCGTGGTTAACGTCAGTACGGGCGAG ATCCTTTCTTCGGTGAACACCAGTAAAACGATCCTTTCCTATGAAGTACAGGCAGGCGTG TTCCGTTTTATTGATTACCCGCGCTTACTGGAAGGCGAAATCGGCTATACCTCGAACGAA CCGGTGATGCTGTGTCTGACGTCAGCCATTGAAACCGGCGTTATCTTCCTCATTAATGAT GGTATCGATCGCGGACTGTCGGATTTGCAGAATAAAGCGGACAGGCAAAATGATATTCTG GTGAAATACCGTGAGCTGTCAGTACCGCCAGAATCCTGAATGTCTATTGCCGTAAATATG AATGACCCGACCAACACGGGCGTCAAAACGACGACCGGCAGCGGGTCGATGACCGGAAGC AACGCTGCCGATCTGCAAAGCAGTTTCCTGACCTTACTGGTCGCGCAATTGAAGAACCAG GACCCGACTAACCCATTACAAAATAATGAGTTAACGACACAGTTGGCGCAAATCAGTACC GTGAGCGGCATTGAAAAACTGAATACGACGCTGGGGGCTATTTCCGGGCAAATCGATAAT AGTCAGTCCCTACAGGCGACCACGCTGATTGGACATGGCGTTATGGTGCCTGGCACCACA ATTCTGGCGGGTAAAGGCGCGGAAGAAGGGGCCGTGACGTCCACGACGCCGTTTGGCGTG GAATTGCAACAGCCTGCGGACAAAGTGACGGCAACCATTACCGATAAAGATGGCCGGGTG GTACGGACGCTGGAGATCGGTGAGTTGCGAGCCGGGGTACACACCTTTACCTGGGATGGT AAGCAAACGGACGGAACAACGGTACCGAATGGTTCTTACAACATTGCGATTACCGCCAGC AATGGCGGGACGCAACTGGTGGCGCAGCCGCTGCAATTCGCTCTGGTACAGGGCGTGACG AAGGGCAGTAACGGCAACCTGTTGGATCTGGGTACCTACGGCACCACCACACTCGACGAA GTTCGGCAAATAATCTAAATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTGCGGCC ACCAACCTTGATGTTATCGGTAATAACATCGCCAACTCCGCCACCTATGGCTTTAAGTCC GGTACGGCATCATTTGCCGATATGTTCGCCGGTTCCAAAGTGGGGTTGGGCGTAAAAGTG GCGGGGATTACCCAGGATTTTACCGACGGTACGACAACGAACACCGGGCGCGGGCTGGAT GTCGCGATTAGCCAGAACGGTTTTTTCCGCCTGGTAGACAGCAACGGTTCCGTGTTCTAT AGCCGCAACGGCCAGTTCAAACTGGACGAGAACCGTAACCTGGTCAATATGCAGGGGATG CAGTTGACCGGCTATCCGGCCACCGGTACGCCGCCGACCATTCAGCAGGGGGCGAATCCT GCGCCGATCACCATTCCGAACACGCTGATGGCGGCGAAATCGACCACCACCGCGTCAATG CAGATCAACCTGAACTCAACGGACCCTGTACCGTCTAAAACGCCCTTTAGCGTGAGTGAT GCGGATTCGTATAACAAAAAAGGCACCGTCACCGTTTATGACAGCCAGGGTAATGCCCAT GACATGAACGTCTATTTTGTGAAAACCAAAGATAATGAATGGGCTGTGTACACCCATGAC AGCAGCGATCCTGCAGCCACTGCGCCAACAACGGCGTCCACTACGCTGAAATTCAATGAA AACGGGATTCTGGAGTCTGGCGGTACGGTGAACATCACCACCGGTACGATTAATGGCGCG ACAGCGGCCACCTTCTCCCTCAGCTTCCTTAACTCCATGCAGCAGAACACCGGGGCTAAT AACATCGTCGCCACCAATCAAAACGGCTATAAGCCTGGCGACCTGGTGAGCTACCAGATT AACAATGATGGCACCGTGGTTGGCAACTACTCCAACGAGCAGGAGCAGGTGCTGGGGCAG ATTGTGCTGGCTAACTTCGCCAACAACGAAGGTCTGGCATCCCAGGGCGATAACGTCTGG GCGGCGACGCAGGCCTCCGGGGTAGCGCTGCTGGGGACTGCCGGTTCCGGCAACTTCGGT AAGCTGACGAACGGCGCGCTGGAAGCCTCTAACGTGGATTTGAGTAAAGAGCTGGTGAAT ATGATCGTCGCGCAGCGTAACTACCAGTCGAATGCGCAGACCATCAAAACCCAGGACCAG ATCCTCAATACGCTGGTTAACCTGCGCTAAATGGATCACGCAATTTATACCGCCATGGGG GCGGCCAGCCAGACGCTTAACCAGCAGGCGGTAACGGCCAGCAACCTGGCTAATGCCTCA ACGCCGGGCTTTCGCGCGCAGCTTAACGCGCTACGCGCGGTGCCCGTTGATGGCCTCTCT TTAGCGACGCGCACGTTGGTTACGGCGTCGACGCCGGGGGCGGATATGACCCAGGGTCAG TTGGACTACACTTCCCGCCCGCTGGATGTTGCGTTACAGCAGGACGGCTGGCTGGTGGTG CAAGCGGCGGATGGCGCTGAAGGATATACCCGTAACGGGAATATCCAGGTGGGCCCGACC GGGCAGTTAACCATTCAGGGACATCCGGTTATCGGCGAAGGCGGCCCGATTACCGTTCCG GAAGGGTCGGAAATCACCATTGCGGCAGACGGCACGATCTCCGCGCTCAATCCCGGCGAC CCGCCAAACACGGTGGCGCCCGTTGGGCGGCTGAAGCTGGTCAAAGCGGAAGGCAATGAG GTGCAGCGGAGCGATGACGGTTTATTCCGCCTTACCGCCGAGGCACAGGCTGAACGCGGG GCGGTACTGGCCGCCGACCCGTCAATTCGCATTATGTCGGGCGTGCTGGAGGGCAGTAAC GTCAAGCCGGTTGAAGCCATGACCGACATGATCGCCAACGCACGTCGTTTTGAAATGCAG ATGAAGGTTATCACCAGCGTAGATGAGAACGAAGGGCGAGCTAACCAACTGCTGTCGATG AGTTAAATGATCAGTTCATTATGGATCGCCAAAACCGGTCTGGACGCGCAGCAAACCAAT ATGGATGTGATTGCCAATAACCTGGCAAACGTCAGCACCAATGGTTTTAAGCGTCAGCGC GCGGTATTTGAAGATCTGTTGTATCAGACCATCCGCCAGCCGGGCGCGCAGTCGTCCGAG CAGACGACGCTGCCTTCCGGGCTGCAAATCGGTACCGGCGTGCGTCCGGTCGCCACGGAG CGCCTGCACAGTCAGGGGAACCTGTCGCAGACCAACAACAGTAAAGATGTGGCGATTAAA GGGCAGGGCTTTTTCCAGGTCATGCTGCCGGACGGTACGTCTGCCTATACCCGCGACGGC TCTTTCCAGGTGGATCAGAATGGTCAACTGGTGACGGCGGGCGGTTTTCAGGTGCAGCCG GCAATCACCATTCCGGCCAACGCGTTAAGCATCACGATTGGCCGCGACGGCGTGGTCAGC GTTACCCAGCAAGGGCAGGCCGCGCCGGTTCAGGTCGGGCAGCTTAACCTGACCACCTTT ATGAACGACACCGGTCTGGAAAGCATCGGCGAGAACCTCTATATCGAAACGCAATCGTCC GGCGCGCCGAACGAAAGCACGCCGGGGCTCAACGGCGCGGGGTTGTTGTATCAAGGGTAT GTCGAAACGTCGAACGTTAACGTGGCGGAAGAGCTGGTGAACATGATTCAGGTTCAACGC GCCTATGAAATTAACAGTAAAGCAGTATCGACGACCGATCAGATGCTGCAGAAACTGACG CAACTCTAAATGGCCCTGATGGTCGCGACGCTGACAGGATGCGCCTGGATACCCGCTAAA CCGCTCGTGCAGGGGGCGACCACGGCGCAGCCGATACCTGGCCCGGTACCGGTGGCGAAT GGCTCCATATTTCAGTCTGCGCAGCCGATTAATTATGGCTATCAGCCGCTTTTTGAAGAT CGTCGACCGCGTAATATCGGCGATACGCTCACGATTGTGTTACAGGAAAACGTCAGCGCC AGTAAAAGCTCGTCGGCAAATGCCAGCCGCGACGGCAAAACCAGCTTTGGTTTTGATACG GTACCGCGTTATCTGCAGGGATTATTCGGTAATTCCCGCGCGGATATGGAGGCCTCCGGC GGCAACTCTTTTAATGGTAAAGGCGGCGCGAATGCCAGCAATACCTTTAGCGGCACGCTG ACCGTGACCGTCGATCAGGTTCTGGCCAATGGCAATTTACACGTCGTGGGGGAAAAACAG ATCGCGATTAATCAGGGAACGGAATTCATCCGCTTCTCCGGCGTGGTAAATCCACGCACC ATCAGCGGTAGCAACTCTGTTCCCTCGACACAGGTGGCGGATGCGCGGATTGAATATGTC GGGAACGGCTATATTAACGAAGCGCAAAATATGGGCTGGCTGCAACGTTTCTTCCTTAAT TTGTCGCCGATGTAAGTGTTTAAAGCTCTTGCAGGAATCGTTCTGGCACTGGTTGCCACT CTGGCGCACGCCGAGCGTATCCGGGATCTGACCAGTGTCCAGGGAGTACGGGAAAACTCG CTGATCGGCTACGGGCTGGTGGTCGGGCTGGACGGTACGGGCGACCAGACGACCCAGACG CCATTTACCACCCAGACGCTGAATAACATGCTGTCACAACTGGGGATTACGGTCCCCACC GGCACCAATATGCAGTTGAAAAACGTGGCGGCGGTGATGGTGACGGCGTCGTATCCGCCT TTTGCGCGACAGGGACAAACGATCGATGTCGTCGTTTCCTCAATGGGGAACGCTAAAAGT CTGCGTGGCGGGACGTTATTAATGACGCCGTTAAAAGGGGTGGACAGCCAGGTGTATGCT CTGGCGCAGGGCAATATTCTGGTCGGCGGCGCGGGCGCTTCCGCAGGCGGCAGTAGCGTG CAGGTTAACCAGCTTAATGGCGGGCGCATCACTAATGGCGCGATTATCGAACGCGAGTTG CCGACTCAGTTCGGCGCTGGCAACACCATTAATCTGCAATTGAACGACGAAGATTTTACG ATGGCGCAGCAAATTACCGACGCCATCAACCGCGCCCGCGGTTACGGCAGCGCCACTGCG CTTGATGCGCGAACGGTACAGGTACGCGTGCCCAGCGGCAACAGCTCGCAGGTGCGTTTT CTGGCGGACATTCAAAATATGGAAGTCAACGTGACGCCGCAGGATGCAAAAGTCGTGATC AACTCGCGTACCGGTTCGGTGGTCATGAATCGGGAAGTCACGCTGGATAGCTGCGCTGTG GCGCAGGGCAATTTGTCAGTGACAGTCAATCGCCAACTCAACGTCAACCAGCCGAATACG CCATTTGGCGGCGGGCAGACCGTGGTGACGCCACAGACTCAGATAGATTTGCGTCAGAGC GGCGGATCGCTACAGAGCGTGCGTTCCAGCGCCAATCTGAACAGCGTAGTGCGCGCGCTG AATGCGCTTGGCGCGACGCCGATGGATCTGATGTCGATTTTGCAGTCCATGCAGAGCGCG GGCTGTCTACGCGCCAAACTGGAAATCATCTGAATGATCGGAGACGGTAAATTGCTGGCC AGCGCGGCCTGGGATGCGCAATCTCTGAACGAACTGAAAGCGAAAGCGGGCCAGGACCCG GCGGCGAATATCCGTCCTGTGGCCCGTCAGGTGGAAGGGATGTTTGTGCAGATGATGCTG AAAAGTATGCGCGAGGCTTTACCCAAAGATGGTTTATTCAGCAGCGATCAGACGCGTCTG TATACCAGCATGTATGACCAGCAGATCGCCCAGCAGATGACCGCCGGTAAGGGATTGGGG CTGGCGGATATGATGGTTAAACAGATGACGGGCGGGCAGACGATGCCTGCAGATGATGCG CCGCAAGTACCGCTTAAATTCTCCCTGGAGACGGTAAACAGCTATCAAAATCAGGCGCTG ACCCAACTGGTGCGCAAAGCCATACCGAAAACGCCGGACAGCAGCGATGCGCCGCTCTCC GGCGACAGTAAAGACTTTCTGGCCCGGCTTTCGCTCCCGGCGAGGCTGGCCAGCGAACAA AGCGGGGTGCCGCATCATCTGATTCTGGCGCAGGCGGCGCTGGAGTCCGGCTGGGGGCAG CGGCAAATCCTGCGGGAGAATGGCGAACCCAGCTATAACGTATTTGGCGTGAAAGCGACC GCCAGTTGGAAAGGGCCGGTGACGGAAATCACCACCACTGAATACGAAAATGGCGAAGCG AAAAAAGTGAAAGCGAAATTCCGCGTCTATAGCTCGTATCTGGAGGCGTTATCGGATTAT GTCGCGCTGTTAACGCGTAACCCACGCTACGCTGCCGTGACCACTGCCGCCACGGCAGAG CAGGGCGCAGTGGCTCTGCAAAACGCCGGATACGCCACTGACCCGAATTACGCGCGTAAA TTGGCCAGCATGATTCAGCAGTTGAAAGCGATGAGTGAAAAGGTCAGCAAAACCTACAGC GCGAATCTCGACAATCTCTTTTAAATGTCCAGCTTGATTAATCACGCCATGAGCGGACTT AACGCCGCGCAGGCCGCGTTAAATACGGTCAGTAATAACATCAACAATTATAACGTTGCG GGTTATACCCGGCAGACAACTATTCTGGCGCAGGCAAACAGTACGTTAGGGGCTGGCGGC TGGATAGGTAATGGCGTTTACGTTTCAGGCGTACAGCGCGAATATGATGCGTTTATCACT AATCAGCTACGCGGCGCGCAAAACCAGAGCAGCGGCTTAACCACGCGCTATGAACAAATG TCGAAAATCGACAACCTGCTGGCCGATAAATCCAGCTCACTGTCTGGCTCGCTGCAGAGT TTTTTTACCAGCCTGCAAACGTTAGTCAGTAATGCGGAAGATCCTGCGGCGCGTCAGGCG CTGATTGGTAAAGCGGAAGGGCTGGTAAACCAGTTCAAAACCACCGATCAGTATCTGCGC GATCAGGATAAACAGGTCAATATCGCGATTGGCTCCAGCGTGGCGCAAATCAACAATTAC GCGAAGCAGATAGCTAACCTGAACGATCAAATCTCCCGTATGACGGGCGTAGGCGCGGGC GCATCGCCGAACGACCTGCTCGATCAACGTGATCAGTTGGTTAGCGAGCTTAACAAGATC GTTGGCGTCGAGGTGAGTGTACAGGACGGCGGCACCTATAACCTGACGATGGCCAATGGC TATACGCTGGTGCAGGGGTCGACGGCGCGTCAGTTGGCGGCGGTTCCCTCCAGCGCCGAC CCGACGCGAACGACTGTCGCTTATGTCGATGAGGCCGCCGGTAACATCGAAATTCCGGAA AAGTTGCTGAACACCGGTTCGCTCGGCGGGCTACTGACGTTCCGTTCTCAGGATCTGGAT CAGACTCGTAATACGCTGGGCCAGTTGGCGTTGGCGTTTGCCGATGCGTTTAACGCGCAG CATACCAAAGGTTATGACGCCGACGGCAATAAAGGGAAAGACTTCTTTAGCATTGGCTCG CCGGTGGTATATAGCAACAGTAATAATGCCGATAAAACGGTATCGCTAACCGCTAAGGTG GTCGACAGCACGAAGGTTCAGGCGACGGATTATAAGATTGTTTTTGACGGTACAGACTGG CAGGTTACTCGCACTGCGGATAACACCACCTTCACGGCAACAAAAGATGCTGACGGAAAA CTGGAGATTGACGGTCTGAAAGTGACGGTAGGGACTGGCGCACAGAAAAACGACAGTTTT CTTCTCAAGCCGGTCAGCAATGCTATCGTCGACATGAACGTTAAAGTGACAAATGAAGCC GAGATTGCGATGGCGTCTGAGTCAAAACTCGATCCTGATGTGGATACCGGCGACAGCGAT AACCGCAATGGTCAGGCATTGCTGGACTTACAAAACAGCAATGTAGTGGGCGGCAACAAA ACCTTTAACGATGCTTACGCCACGTTGGTCAGCGATGTGGGTAACAAAACGTCAACGCTG AAAACCAGCAGCACCACGCAGGCGAATGTGGTTAAACAGCTTTATAAACAGCAACAGTCG GTTTCCGGCGTTAACCTCGACGAAGAGTACGGCAATTTGCAGCGTTATCAGCAGTATTAT CTGGCGAATGCGCAAGTATTGCAGACCGCGAATGCGCTGTTTGATGCGTTATTGAATATT CGCTAAATGCGTATCAGTACCCAGATGATGTACGAACAAAATATGAGCGGCATCACTAAT TCTCAGGCCGAATGGATGAAGCTGGGCGAGCAGATGTCTACCGGTAAGCGCGTTACCAAC CCATCTGACGATCCGATCGCCGCGTCGCAGGCGGTAGTACTCTTTCAGGCGCAGGCGCAG AATAGCCAGTACGCCCTGGCGCGTACGTTTGCCACCCAAAAAGTGTCGCTGGAAGAAAGC GTACTCAGTCAGGTGACGACGGCGATTCAAACCGCGCAGGAAAAAATCGTCTATGCCGGA AACGGCACGTTAAGCGACGATGACCGCGCGTCGCTGGCGACGGATTTACAGGGGATCCGC GATCAGCTGATGAACCTGGCAAACAGCACTGACGGCAATGGTCGCTATATCTTTGCCGGG TATAAAACGGAAGCGGCGCCATTCGACCAGGCGACAGGTGGTTATCATGGCGGCGAGAAA AGTGTTACCCAGCAGGTGGATTCCGCACGCACGATGGTAATTGGCCATACGGGAGCGCAA ATTTTTAATAGCATCACCAGCAATGCGGTGCCGGAACCGGATGGCTCGGACTCCGAAAAG AATCTGTTTGTCATGCTCGATACGGCAATTGCCGCGCTCAAGACCCCGGTGGAAGGCAAT GACGTGGAAAAAGAAAAAGCCGCTGCCGCCATTGATAAAACCAATCGCGGCTTAAAAAAT TCGCTTAATAACGTCCTGACCGTTCGTGCGGAACTGGGAACGCAACTGAGCGAACTCAGT ACGCTGGATTCACTGGGAAGCGACCGTGCGCTGGGACAGAAGCTACAGATGAGCAACCTG GTAGATGTGGACTGGAACTCGGTCATTTCCTCCTACGTCATGCAACAGGCGGCATTACAG GCGTCCTATAAAACGTTTACCGACATGCAGGGAATGTCGCTTTTCCAGTTGAACCGGTAA ATGGAGATAATTTTTTATCACCCGACATTTAACGCCGCCTGGTGGGTAAATGCGCTGGAG AAGGCTCTCCCACATGCGCGCGTTCGTGAATGGAAGGTCGGTGATAACAACCCCGCAGAC TATGCGCTTGTATGGCAGCCCCCGGTTGAAATGCTGGCCGGAAGACGCTTAAAAGCCGTC TTTGTGCTGGGCGCGGGGGTGGATGCAATTCTGAGTAAATTAAATGCGCATCCGGAAATG CTGGACGCCTCCATTCCTCTATTCCGTCTGGAAGATACCGGAATGGGCCTGCAAATGCAG GAGTATGCCGCCAGCCAGGTATTACACTGGTTCCGTCGTTTCGATGATTATCAGGCGCTG AAAAATCAGGCGCTATGGAAACCGTTGCCGGAATATACCCGCGAAGAGTTTAGCGTCGGT ATCATAGGCGCAGGGGTACTGGGCGCAAAAGTGGCAGAAAGTCTACAGGCGTGGGGGTTC CCGTTACGTTGCTGGAGTCGTAGCCGCAAATCCTGGCCTGGCGTGGAAAGTTATGTAGGG CGTGAAGAACTGCGCGCTTTCCTGAACCAGACGCGGGTGCTGATTAATCTGCTGCCGAAT ACGGCCCAAACGGTAGGAATTATTAATAGCGAATTGTTGGATCAATTGCCGGATGGCGCT TACGTGCTGAATCTCGCGCGCGGCGTTCATGTTCAGGAGGCGGATCTGCTGGCTGCGCTT GATAGCGGTAAGCTAAAAGGCGCGATGTTGGATGTCTTTAGCCAGGAACCGTTACCGCAG GAAAGTCCATTATGGCGCCATCCGCGAGTCGCCATGACGCCGCACATTGCGGCAGTCACC CGTCCGGCGGAAGCCATCGATTATATTAGCCGCACCATTACCCAGCTGGAGAAGGGAGAG CCGGTGACGGGGCAGGTGGATCGGGCGAGAGGATATTGGATGTCCGTAATCAAGAAAAAT ATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATCCATTCTGCGGTAGGGCAACAA ACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATTGTTGAGCCACTGTGCGATATT TCTACTCACGCCGAAAATATTGATTTAACCTGCCTACGCGAAGGTAAAAAGCAAATGCAC CGGATAGACCTTCGGCAGGCATCTGGATTACCGCAGGATATTCAGTCCATTGCGACGGTA CGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTGATGAATATTGAGTACCGTTAA ATGGCAAACCATCGTGGCGGTTCCGGTAATTTTGCGGAAGACCGCGAAAGAGCATCAGAA GCAGGTCGTAAAAGTGGTCAGCACAGCGGGGGCAATTTTAAGAATGACCCGCAGCGTGCA TCCGAAGCAGGCAAAAAAGGGGGCAAAAGCAGTAACCGTAATCGCTAGATGGTAATGTCC GCACCAGGACACATTGTTTACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGT GGTGGTCTTGTCATCTTAAAAGCTCTCATCATTTCCCTTACTGTCCATACCCATGACGCC ATATGTGGTGCGCGTAGCCGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAG GAAGCCAACCCTCAGATGTGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTAT ACCTACAACTCAAGGTGCTATCCATGGGAAGACAAAAAGCAGTGAATGAAACGAATTTTC CTTACCTGCGCGGCGTTGTTGTTCAGCAGTCAGGCGTTGGCCGATGAGTGTGCCAGCGCC AGTACGCAGCTGGAAATGAATCGCTGCGCCGCCGCGCAATACCAGGCGGCAGATAAAAAG CTGAACGAAACCTATCAAAGCGCGATTAAGCGTGCGCAACCGCCGCAGCGTGAGCTATTG CAAAAAGCGCAGGTGGCATGGATTGCCCTGCGCGACGCCGATTGCGCGCTGATTCGCTCA GGTACGGAGGGCGGCAGCGTTCAACCCATGATCGCCAGCCAGTGCCTGACCGATAAAACG AACGAACGCGAAGCGTTTTTAGCCTCGCTGCTGCAATGTGAAGAGGGTGATTTGAGCTGC CCACTGCCGCCAGCCGGTTAAGTGCGTATATTCGCGGTGAGCATAATGGTGATTACCCTG AGCGGCTGCGGCAGTATTATCAGCAGAACGATCCCCGGACAAGGACACGGCAACCAGTAT TACCCTGGCGTGCAGTTGGATATGCGTGATTCCGCATGGCGCTATATCACTATCCTCGAT CTGCCCTTCTCACTGATCTTCGATACACTGCTACTGCCGCTCGATATTCACCACGGGCCT TATGAGTAAATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGACGAA AGCATGGGCAGTAACGATGTGCATTATCAGTCGTTTGCTCGTATGGCGGATTTCTTTGGT CGTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTCTTGATACCGGG CAGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTGCTA ACGCCGCCCTCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTTCTG ACGGTACGCGAAGAGCTGGTTTGGCCGCTGCTGGAAGTGCTTTATCCCGGCACCAGAGAG GCCTTCGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACGAGCTGGCGGCG CTCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGCGAA CATACCTTGGTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAGCTG GACGATCATGCCGCAACCGGGATGCGCGGTGAACTGAAACTTTTTCAGCGCTTTACCCTG TTAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCTGTGAGTTGCAT ATTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAACGC CTGATTTTTGATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAATGCT GTCAACGAGATCGCCTGGCAATTAGGTTTTAAAGATCCGGCTTATTTCGCCCGTTTCTTT AATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTCCTTCTTTTCTC AACTAAATGGGACGCACACCGGATTACAAAGCCGCCTTTGGCTGCGCTCTGGGCGCTAAC CCAGCCTTCTACGGCCAGTTTGAGCAGAACGCCCGTAACTGGTACACCCGTATTCAGGAG ACCGGCCTGTACTTTAACCATGCAATCGTCAACCCGCCCATTGACCGCCACAAACCTGCC GACGAAGTGAAAGACGTCTATATCAAGCTGGAGAAAGAGACGGACGCCGGGATTATTGTC AGCGGGGCGAAAGTTGTCGCCACTAACTCCGCCCTGACTCACTACAACATGATTGGTTTC GGCTCAGCCCAGGTGATGGGCGAAAACCCGGATTTTGCTCTGATGTTTGTCGCGCCAATG GATGCCGAAGGCGTAAAACTTATTTCGCGCGCCTCGTATGAAATGGTCGCGGGCGCGACG GGCTCGCCGTTTGATTATCCCCTCTCCAGCCGTTTTGATGAAAACGATGCCATTCTGGTG ATGGACAAGGTGCTGATCCCGTGGGAAAACGTATTAATTTACCGTGATTTCGATCGTTGT CGTCGCTGGACGATGGAAGGCGGCTTTGCCCGTATGTATCCACTGCAAGCCTGTGTTCGT CTGGCGGTAAAACTTGATTTCATTACCGCGCTGCTGAAAAAATCGCTCGAATGTACGGGT ACCGTAGAGTTCCGGGGCGTGCAGGCCGATCTCGGCGAAGTCGTGGCCTGGCGCAATATG TTCTGGGCATTGAGCGATTCTATGTGTTCTGAAGCAACCCCGTGGGTAAACGGCGCCTGG CTACCGGACCACGCCGCGCTGCAAACCTATCGTGTGATGGCCCCAATGGCCTACGCGAAA ATTAAAAATATTATTGAACGTAACGTTACCAGCGGCCTGATTTACCTGCCTTCCAGCGCC CGCGATCTGAATAATCCGCAAATCGACCAGTACCTGGCGAAATACGTACGCGGCTCTAAC GGAATGGACCATGTTGAACGTATCAAAATTCTTAAATTGATGTGGGATGCCATCGGCAGC GAGTTTGGCGGTCGCCATGAGCTGTACGAGATTAACTACTCGGGCAGCCAGGATGAAATT CGTCTGCAGTGTCTGCGTCAGGCCCAGAGCTCCGGCAATATGGATAAGATGATGGCAATG GTCGATCGCTGCCTCTCCGAATACGATCAGAATGGCTGGACGGTTTCGCATTTGCACAAT AACGACGACATCAATCAACTGGATAAGCTGCTGAAATAAATGCAAGTAGATGAACAACGT CTGCGTTTTCGCGATGCGATGGCAAGTCTGGCGGCAGCGGTCAACATCGTAACCACGGCG GGTCACGCCGGACGCTGCGGTATCACCGCAACAGCGGTTTGCTCAGTCACTGATACGCCG CCCTCCGTGATGGTATGTATTAATGCCAATAGCGCCATGAACCCCGTTTTTCAGGGCAAC GGCAGGCTGTGCATTAATGTACTTAACCATGAGCAGGAGCTGATGGCGCGCCACTTTGCC GGTATGACGGGGATGGCGATGGAGGAGCGTTTTCACCAGCCATGTTGGCAAAACGGGCCG CTGGGCCAGCCGGTACTTAACGGCGCGCTGGCCAGTCTTGAAGGCGAGATCAGCGAGGTA CAAACCATTGGCACGCATCTGGTGTATCTGGTGGCGATCAAAAATATTATTCTTAGCCAG GAGGGGCATGGCCTGATTTATTTCAAACGCCGTTTTCATCCGGTCAGACTTGAGATGGAA GCGCCTGTTTAAATGAAGGGTACTGTTTTCGCCGTTGCGTTAAACCATCGCAGCCAGCTT GATGCCTGGCAAGAGGCTTTCTCTCAGCCTCCCTATAATGCGCCGCCTAAAACCGCAGTG TGGTTCATCAAGCCGCGTAATACGGTGATTCGTCACGGCGAACCCATTCCTTATCCGCAG GGAGAAAAGGTACTGAGCGGCGCGACAGTGGCGCTCATTGTGGGGAAAACCGCCAGCCGG ATACGCCCTGAAGCGGCGGCGGACTATATCGCCGGGTATGCGCTGGCTAACGAGGTCAGC CTGCCGGAAGAGAGCTTTTATCGCCCGGCGATTAAAGCGAAATGTCGCGATGGCTTTTGC CCGCTGGGTGAAATGGCGCCGCTGAGTGATGTGGATAATCTCACCATTATCACTGAAATC AACGGACGAGAAGCGGACCACTGGAATACTGCCGATTTACAGCGTAGCGCCGCACAACTG CTTAGCGCGTTAAGTGAGTTCGCTACACTTAACCCTGGCGATGCGATCTTACTTGGTACG CCGCAGAATCGCGTTGCGCTGCGTCCCGGCGATCGGGTGCGTATTCTGGCGAAAGGTTTA CCCGCGCTGGAAAATCCGGTTGTCGCAGAAGATGAATTCGCCCGCCACCAGACGTTTACG TGGCCGCTGTCAGCGACGGGAACGTTATTTGCGCTGGGGTTGAACTACGCCGATCACGCC AGCGAGCTGGCATTTACGCCGCCGAAAGAGCCGCTGGTATTTATCAAAGCGCCAAACACC TTTACCGAACATCACCAAACGTCGGTGCGCCCGAACAACGTCGAATATATGCACTACGAA GCCGAGCTGGTCGTGGTGATTGGCAAAACGGCGCGTAAGGTGAGCGAAGCCGAAGCCATG GAGTATGTGGCCGGTTACACCGTCTGTAACGACTACGCGATCCGCGACTATCTGGAAAAC TACTACCGTCCGAATCTGCGGGTAAAAAGCCGCGACGGCCTGACGCCGATAGGCCCGTGG ATTGTGGATAAAGAGGCGGTTTCTGATCCGCACAACCTGACGTTACGCACCTTTGTCAAC GGTGAGCTGCGGCAGGAAGGGACGACCGCCGATCTGATCTTCAGCATCCCGTTCCTGATT TCTTATCTGAGCGAATTTATGACGTTGCAACCGGGCGACATGATTGCCACCGGTACGCCG AAAGGGCTGTCCGATGTGGTGCCGGGGGATGAAGTTGTCGTTGAAGTAGAAGGCGTGGGT CGCCTGGTTAACCGAATCGTCAGTGAGGAGAGCGCAAAATGAATGAAAAATGCTTTCAAA GACGCGTTAAAAGCGGGGCGCCCGCAAATCGGTTTGTGGCTGGGGCTTGCCAACAGTTAC AGCGCTGAACTGTTAGCGGGCGCCGGCTTCGACTGGCTACTGATTGACGGTGAACACGCG CCAAACAACGTGCAGACGGTGTTGACCCAGTTGCAGGCGATTGCGCCTTATCCCAGCCAG CCGGTGGTGCGTCCGTCATGGAACGATCCGGTACAGATTAAGCAACTGCTCGACGTCGGC GCGCAAACGCTGCTGATACCGATGGTGCAGAATGCCGATGAAGCGCGAAACGCCGTGGCG GCTACGCGTTATCCGCCTGCCGGTATTCGCGGCGTGGGCAGCGCGCTGGCGCGGGCATCG CGCTGGAATCGCATTCCGGACTATCTCCACCAGGCCAACGACGCCATGTGCGTACTGGTG CAGATTGAAACGCGTGAGGCGATGAGCAATCTGGCGTCAATTCTCGACGTGGATGGCATT GACGGCGTGTTTATTGGCCCGGCGGATCTCAGCGCCGATATGGGCTTTGCCGGCAATCCG CAGCACCCGGAAGTGCAGGCGGCGATTGAGAACGCCATCGTGCAGATACGCGCGGCGGGG AAAGCGCCGGGGATTCTGATGGCCAATGAAGCACTGGCGAAACGTTATCTGGAACTGGGG GCGCTATTTGTCGCCGTCGGCGTTGACACCACGCTGCTGGCGCGCGGAGCGGAGGCGCTG GCGGCGCGCTTTGGCGCAGAAAAAAAACTGTCCGGTGCGTCCGGCGTCTATTAAATGCAT GATTCATTAACCATCGCCTTGCTTCAGGCGCGCGAAGCGGCAATGACCTATTTCCGCCCC ATCGTTAAAAGCCACAATCTGACCGACCAGCAATGGCGCATTGTGCGAATCCTGGCCGAT AGCCCCTCTATGGATTTTCACGAGCTGGCCTTTCGTACCTGTATTTTGCGTCCAAGTCTG ACCGGAATATTGACGCGCATGGAGCGAGACGGACTGGTGTTGCGACTCAAGCCGGTTAAC GATCAGCGTAAGTTATATGTCATGTTGACGGAGCAGGGACAAACGTTGTACGCCCGTGCC CGGAGCGAGGTAGAAGAGGCTTATCGAAAAATTGAGGCCGATTTCACGCCCGAAAAAACA CAGCAATTGATGCTGCTGCTGGACGATCTTATTGCTCTGGGGCGCCAGCATCCTGATAGC GAAGCGGAAGCATAGATGAGCGACACATCATCTGCACTTCCGGAAAGCCCCGAGTCTGTC GGTTCGCACAACGCGCTCAGCACGGGTCAACAAACCGTCATAAATAAACTGTTCCGCCGA CTGATCGTATTTTTATTCGTGTTGTTTATCTTCTCGTTTTTAGACCGTATCAACATCGGT TTTGCCGGGTTGACGATGGGGCAGGATCTGGGGTTAAGCGCCACCATGTTTGGTCTTGCC ACGACGCTGTTTTACGCCACCTACGTCATTTTCGGCATTCCCAGCAACGTGATGTTGAGC ATCGTCGGCGCCCGCCGCTGGATTGCGACCATTATGGTGCTATGGGGCATTGCATCTACC GCCACGATGTTCGCGGTGGGACCGAAAAGCCTGTATGTGCTGCGAATGCTGGTGGGCATT ACCGAAGCGGGCTTTTTGCCAGGAATATTGCTCTATTTAACCTACTGGTTCCCGGCATTT TTCCGCGCCCGCGCCAACGCATTATTTATGATTGCCATGCCGGCCACTACCGCGTTGGGG TCAATTGTCTCCGGCTATATTTTATCGCTGGACGGCATATTCAATCTGCATGGATGGCAG TGGTTATTCCTGTTGGAAGGATTTCCGTCAGTTTTGTTAGGCATTATGGTCTGGTTTTAC CTGGATGATACCCCGGCAAAAGCCAAATGGCTGACGGCAGAGGATAAAAAATGTTTGCAG GAGATGATGGATAATGATCGCCTGACGCTGGTTCAGCCTGAGGGGGCCATCAGCCATAAC GCCATGCAGCAGCGTAGCCTGTGGCGCGAAGTATTCACGCCAATTGTACTGATGTATACG CTGGCCTATTTTTGCCTTACCAATACGCTTAGCGCCATTAGTATCTGGACGCCGCAAATC CTGAAAAGTTTTAATGAAGGCAGCAGCAATATCACCATCGGCCTGCTGGCGGCGATCCCG CAGATTTGTACTGTTCTGGGCATGATTTACTGGAGCCGCCATTCGGACAAACATCAGGAG CGTAAACACCACACTGCGTTACCGTTCCTGTTTGCCGCCGCGGGCTGGCTGCTGGCGTCG GCGACCGACCGTAACCTGATCCAGCTCCTGGGGATCGTGATGGCATCCACGGGTTCCTTT AGCGCGATGGCGATCTTCTGGACCACGCCGGATCAGTCGATCAGTTTACGCGCCAGGGCG ATAGGCATTGCGGTCATCAATGCCACCGGCAATATTGGCTCCGCGCTCAGCCCGGTTATG ATTGGCTGGCTAAAAGATATCACTGGTAGCTTCAATAGCGGACTCTGGTTTGTCGCTTCT CTGTTAGTCGTCGGCGCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCGCGC GCCACCCCTTGAATGGGCAAGTTAGCGTTAGCAGCAAAAATTACCCACGTGCCGTCGATG TATCTTTCTGAACTGCCAGGAAAAAATCACGGTTGTCGTCAGGCAGCCATTGATGGGCAT ATTGAAATTGGCAAGCGTTGCCGCGAAATGGGCGTTGACACCATTATCGTATTCGACACC CACTGGCTGGTGAATAGCGCTTACCACATTAATTGTGCCGACCATTTCCAGGGCGTCTAT ACCAGCAACGAATTGCCGCACTTTATTCGCGACATGACCTATGACTATGACGGTAATCCG GCGCTCGGCCATCTGATCGCCGACGAGGCGGTCAAACTGGGCGTGCGCGCCAAAGCGCAC AACATCCCGAGCCTGAAGCTGGAGTATGGCACGCTGGTGCCGATGCGCTACATGAACAGC GACAAGCACTTCAAAGTGGTCTCCATCTCGGCGTTCTGCACTGTGCATGATTTTGCCGAC AGCCGCAAACTGGGCGAAGCCATTCTCAAGGCGATTGAGAAATATGACGGTACCGTAGCG GTATTCGCCAGTGGTTCTCTGTCGCACCGTTTTATTGACGACCAACGGGCGGAAGAGGGG ATGAACAGCTACACCCGCGAGTTCGATCATCAAATGGACGAGCGCGTGGTCAAGCTGTGG CGCGAAGGCAAATTCAAGGAGTTTTGCACCATGTTGCCGGAGTACGCCGACTACTGCTAC GGCGAAGGCAACATGCACGACACGGTCATGCTACTGGGAATGCTGGGGTGGGACAAATAC GACGGCAAGGTGGAGTTCATCACCGACCTGTTCGCCAGCTCCGGTACCGGCCAGGTAAAC GCTGTTTTCCCGCTGCCTGCGTAAATGAAGAAAATAAATCATTGGATTAACGGCAAAAAC GTTGCAGGTAACGACTACTTCCAGACCACTAACCCGGCGACCGGTGATGTGCTGGCGGAA GTAGCCTCCGGCGGTGAAGCAGAAGTGAACCAGGCTGTCGCGGCGGCAAAAGAGGCGTTC CCGAAATGGGCCAACCTGCCGATGAAAGAGCGCGCGCGCCTGATGCGCCGCCTTGGCGAC CTGATTGACCAGCATGTGCCGGAAATCGCGGCGATGGAAACCGCCGACACCGGCCTGCCT ATTCACCAGACTAAAACGTGCTGAGTGCTGATCCCGCGCGCCTCGCATAACTTCGAATTC TTCGCCGAAGTGTGCCAGCAGATGAACGGCAAGACCTATCCGGTTGACGATAAAATGCTC AATTATACGCTGGTGCAGCCCGTCGGCGTCTGCGCGCTGGTGTCGCCGTGGAACGTGCCG TTTATGACCGCGACTTGGAAAGTTGCGCCGTGCCTGGCGCTGGGTAACACCGCGGTGCTC AAAATGTCCGAGCTGTCGCCGCTGACTGCCGACAGGCTGGGCGAGCTGGCACTGGAGGCA GGAATTCCGGCAGGCGTGCTGAACGTGGTGCAGGGCTACGGCGCGACGGCGGGCGATGCG CTGGTACGCCACCATGACGTGCGTGCGGTGTCGTTTACCGGCGGTACCGCCACCGGTCGC AATATCATGAAAAATGCCGGGCTGAAAAAATACTCGATGGAGCTGGGCGGCAAATCGCCG GTGCTGATTTTTGAAGACGCCGACATTGAGCGCGCGCTGGACGCCGCGCTGTTCACCATC TTCTCGATCAACGGCGAACGCTGCACCGCTGGGTCGCGCATCTTTATCCAGCAGAGCATT TACCCTGAGTTCGTGAAGCGCTTTGCCGAACGCGCGAATCGCCTGCGTGTCGGCGATCCG ACCGACCCGAACACCCAGGTCGGCGCGCTGATTAGCCAACAGCACTGGGAGAAAGTCTCC GGTTATATCCGCCTCGGCATTGAAGAGGGGGCAACGCTGCTGGCGGGCGGTGCGGAAAAA CCCACTGACCTGCCTGCGCATCTGAAAGGCGGTAACTTCCTGCGCCCAACCGTGCTGGCC GATGTCGACAACCGTATGCGCGTTGCGCAGGAAGAGATCTTTGGGCCGGTCGCCTGCCTG CTGCCATTCAAAGACGAAGCGGAAGGGTTACGTTTGGCGAACGATGTGGAATACGGTCTG GCCTCTTATATCTGGACCCAGGACGTGAGCAAAGTGTTGCGCCTGGCGCGTGGGATTGAA GCCGGCATGGTCTTCGTCAACACCCAGAACGTCCGCGACCTGCGCCAGCCGTTCGGCGGC GTGAAAGCCTCCGGTACCGGGCGCGAAGGCGGCGAATATAGCTTCGAAGTGTTTGCGGAA ATGAAAAACGTCTGCATCTCAATGGGCGACCATCCTATCCCAAAATGGGGAGTTTGAATG CCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGCCTG TTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATCCGC AGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTT GTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGC GAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTG GCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTA CACGCGTTATTTAAATAGATGCTCGATAAACAGACCCATACCCTGATCGCTCAGCGACTT AATCAGGCTGAAAAACAGCGTGAACAGATTCGCGCAGTGTCGCTGGATTATCCCAACATC ACTATTGAAGATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATTGCCGAAGGG CGCACGCTCAAAGGCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAA ATCAGCGAACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGAGAT ATCCCCACCGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCG AAACCGCTGCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTG ATTCCGGCGCTGGAACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGC CCGCGCAAAGTGTTCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGT GGTCGCCCCATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGC AACGGCGTGATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGC GTGGCGTGGCTGGCGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATC ATCCTCGGCGGCTCGTTCACCCGCCCGGTGCCGGCGCGCAAGGGCGACACCTTCCATGTC GATTACGGCAACATGGGCGCGATCAGTTGCCGGTTTGTGTAAATGAGCTCTGTACCCGCG CCGCGTGAATATTTTCTTGACTCTATCCGCGCATGGCTGATGTTGTTAGGGATTCCCTTT CATATCTCGTTGATCTATTCCACTCACAGTTGGCATGTCAATAGCGCCGCGCCATCGTGG TGGCTAACCCTGTTTAACGATTTTATCCACGCTTTTCGTATGCAGGTGTTTTTTGTTATT TCTGGTTATTTTTCGTACATGTTATTTTTACGTTATCCATTAAAACACTGGTGGAAAGTA CGGGTAGAACGTGTGGGTATTCCCATGCTTACCGCAATCCCTTTGCTTACCTTGCCGCAA TTTATCCTGTTGCAATATGTCAAAGAGAAAACAGAGAACTGGCCTACACTCTCTGCCTAT GAAAAATATAATACGTTAGCGTGGGAACTCATTTCACATCTGTGGTTTTTACTGGTGCTG GTGATATTAACCACCGTCAGCATCGGGATTTTTACCTGGTTCCAAAAAAGGCAGGAAACA AGCAAGCCTCGTCCCGCCGCTATTTCGCTGGCCAAACTTTCGCTTATTTTTTTCCTGCTG GGGGTGGCGTACGCTGCTATCAGGCGCATTATATTCATCGTATATCCGGCAATCCTCAGT GACGGCATGTTCAATTTTATTGTGATGCAAACGCTATTTTATGTGCCGTTTTTTATTCTC GGCGCGTTGGCCTTCATTCACCCCGATCTGAAAGCGCGCTTCACCACGCCCTCACGCGGA TGCACTTTAGGCGCTGCCGTTGCTTTTATCGCGTATCTGCTGAATCAACGTTATGGGAGC GGCGACGCCTGGATGTACGAAACCGAATCCGTGATTACGATGGTAATGGGGCTATGGATG GTGAACGTGGTATTTTCACTGGGGCATCGCTTGTTAAACTTTCAGTCCGCGCGTGTCACC TATTTCGTGAATGCTTCGCTGTTTATTTATCTGGTGCATCATCCCTTAACGCTTTTCTTT GGCGCGTATATTACACCGCATATCTCCTCCAACCTGATCGGGTTCTTGTGCGGGCTGATA TTTGTTATGGGTATTGCGTTAATTCTGTATGAAATTCATTTACGCATCCCGCTCCTGAAA TTTCTCTTTTCAGGTAAACCGCCGGTAAAACAAGAAAGCCGCGCCGCGATCGGGTAGATG AAACATAAACGACAAATGATGAAAATGCGTTGGTTGGGCGCAGCTATTATGTTAACGCTC TACGCATCATCGAGCTGGGCGTTCAGTATTGATGACGTGGCAAAACAAGCTCAATCTTTA GCCGGGAAAGGCTATGAGGCGCCTAAAAGCAACTTGCCCTCCGTTTTCCGCGACATGAAA TATGCGGATTATCAGCAGATCCAGTTTAACAGCGATAAAGCCTACTGGAACAACTTAAAG ACCCCTTTTAAGCTCGAATTTTACCATCAGGGGATGTACTTCGATACGCCGGTCAAGATT AACGAAGTGACGGCGACGACGGTCAAAAGAATCAAATACAGCCCGGATTACTTCAATTTT GGCAATGTTCAGCACGATAAAGACACGGTAAAAGATTTAGGCTTCGCCGGGTTCAAAGTC CTGTACCCCATTAACAGTAAAGATAAGAACGACGAAATCGTCAGTATGCTTGGCGCCAGC TATTTCCGCGTTATCGGCGCAGGCCAGGTGTATGGCTTATCTGCGCGCGGCCTGGCGATT GATACCGCCTTACCATCTGGTGAAGAGTTTCCCCGCTTTCGCGAGTTCTGGATTGAGCGT CCAAAACCCACCGATAAGCGTTTGACCGTCTATGCATTACTGGATTCTCCGCGCGCGACC GGCGCTTACCGTTTTGTGATCATTCCTGGCCGCGATACCGTGGTGGACGTGCAGTCAAAA GTCTATCTGCGCGATAAGGTGGGCAAGCTGGGCGTTGCGCCATTAACCAGTATGTTCCTG TTTGGGCCAAACCAGCCGTCGCCGACGACCAACTATCGTCCGGAATTGCATGACTCGAAC GGCTTATCCATTCATGCGGGTAATGGCGAGTGGATTTGGCGTCCGCTGAACAATCCAAAA CACCTCGCTGTGAGCAGCTATGCGATGGAAAACCCTCAGGGATTCGGCCTGTTGCAGCGT GGTCGCGAGTTCTCGCGCTTTGAAGATTTAGACGATCGCTATGACCTGCGTCCAAGCGCC TGGATTACCCCGAAAGGCGACTGGGGCAAAGGTAAGGTTGAACTGGTTGAAATTCCGACC AATGATGAAACCAACGATAACATCGTCGCTTACTGGACTCCGGATCAACTGCCGGAACCG GGTAAAGAGATGAACTTCAAGTACACTCTGACCTTCAGCCGCGATGAAGATAAACTTCAT GCGCCGGATAATGCCTGGGTGCTGCAAACACGCCGCTCAACGGGCGACGTTAAACAGTCG AATCTGATTCGCCAGCCCGACGGCACTATTGCCTTTGTGGTGGATTTCGTTGGCGCCGAC ATGAAAAAACTGCCGCCGGATACGCCCGTCGCTGCACAAACCAGCATTGGCGATAACGGT GAAATCGTTGACAGTAATGTACGCTATAACCCAGTCACTAAAGGCTGGCGTTTAATGCTG CGCGTGAAAGTCAAAGACGCGAAGAAAACCACGGAAATGCGTGCCGCATTGGTGAATGCC GATCAGACGCTAAGTGAAACCTGGAGCTACCAGTTACCTGCCAATGAATAAATGAATAAA ACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCATTGCCGAAA ACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTACTCGCGAGAA GACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCGGATTCATTG GCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCTATGCCAAAA GCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGCCGTTTCTGG GATCGCCTGCGTGGGCGGGATGTTACGCCGCGCTATGTTTCTCGTCTGACAAAAGAAGAG CAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATTTTGTTAATT TTGACTCTGGCGCAAACCGTCGTTGCGACCTGGTATATGAAGACCATTCTGCCCTATCAG GGATGGGCGCTCATCAATCCTATTGATATGGTGGGGCAGGATATTTGGGTCTCCTTTATG CAGCTCCTGCCCTACATGCTGCATACCGGTATCCTGATTTTGTTTGCCGTGCTGTTCTGC TGGGTGTCTGCCGGATTCTGGACTGCGCTGATGGGCTTCCTGCAACTGCTTATCGGGCGC GATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCGGAACACCAG ACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCCGGTCTGCGC GCGACCTGGGAGTCCGTTAAAGCTACAGGCAACGCCGCGCATTTTGACGTCTATATCCTT AGCGATAGTTATAACCCGGATATTTGCGTGGCGGAGCAAAAGGCGTGGATGGAGCTCATC GCGGAAGTGCAGGGCGAAGGCCATATTTTTTACCGTCGCCGCCGCCGCCGTATGAAACGC AAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGCTATATGGTG GTGCTGGACGCGGACTCAGTGATTAGCGGCGAGTGTCTGAGCGGGCTGGTGCGCCTGATG GAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGGATGGATACT CTGTATGCCCGCTGCCAACAGTTTGCGACCCGTGTTTATGGACCGCTGTTTACCGCCGGG CTGCACTTCTGGCAGTTGGGGGATTCGCACTACTGGGGGCACAATGCCATTATCCGCGTG AAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCGTTCGCCGGA TCGATTCTTTCCCACGACTTTGTTGAGGCGGCGCTAATGCGTCGGGCAGGGTGGGGCGTC TGGATTGCCTACGATCTCCCCGGTTCCTATGAAGAGCTGCCGCCAAACCTGCTGGATGAG CTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTGTTCCTGGTG AAAGGAATGCACCCGGTGCATCGTGCCGTGTTCCTGACCGGGGTAATGTCATACCTGTCC GCGCCGTTATGGTTTATGTTCCTTGCGCTTTCTACCGCGCTGCAGGTCGTTCATGCGTTA ACAGAGCCGCAATATTTCCTTCATCCGCGCCAGCTTTTTCCGGTCTGGCCGCAGTGGCGT CCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTGCCGAAGCTG CTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTCTGGCGCGTT ACGCTGTCGCTATTGCTGGAAGTTCTGTTCTCCGTGTTGCTGGCGCCGGTGCGTATGCTG TTTCATACCGTGTTTGTGGTCAGTGCGTTCCTCGGCTGGGAAGTGGTCTGGAACTCACCG CAACGCGACGATGATTCTACGCCTTGGGGAGAAGCCTTTATGCGTCACGGCTCTCAACTG CTGCTGGGGCTGGTCTGGGCGGTTGGTATGGCGTGGCTGGATTTACGCTTTCTGTTCTGG CTGGCGCCGATTGTCTTTTCGCTTATTCTGTCGCCATTTGTTTCGGTGATCTCCAGTCGT TCAACGGTAGGATTACGCACCAATCGCTGGAAGCTGTTCCTGATCCCGGAAGAGTATTCG CCGCCTCAGGTGTTGGTCGATACTGATAAATATCTGGAGATGAATCGCCGCCGTATTCTG GACGATGGCTTTATGCATGCGGTTTTTAACCCGTCGCTTAATGCGCTGGCGACCGCGATG GCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGTCATGTGGAG CAGGCGCTAAACGAAACGCCGGATAAACTGAACCGCGATCGGCGTCTGGTTTTGCTCAGC GATCCGGTGACGATGGCGCGTTTTCACTATCGGGTCTGGAATGCGCCAGAGAGATACTCT TCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAGGGACGAACA TCGTCAGCGGGATAAatgtcgcgcgtctcgnnggcgaggaacctgggtaaatattttctt ctcatcgataacatgttagtggtgctgggtnntttcgtcgtcttcccgctcatctctatt cgctttgtcgatcaaatggggtgggctgccnnaatggtagggatcgcgctcggcctgcgt cagtttattcaacaaggtctgggcatttttnncggcgccatcgccgatcgctttggcgcg aaaccgatgattgtcaccggtatgctgatgnncgccgcaggctttgccaccatgggtatc gcgcatgagccctggctcttgtggttttccnnctttctttccggtctcggcggtacgctt ttcgacccgccgcgttcagcgctggtggtcnnattaattcgtccggagcaacggggccgc ttcttctctctgttgatgatgcaggacagcnngggcgcggtgattggcgcgctgctggga agctggttgctacaatacgattttcgcctgnnctgcgcgacgggcgctattttgttcata ttatgcgcccttttcaacgcatggctgcttnnggcctggaagctatcaacggccagaacg ccggtgcgtgaaggaatgcgccgcgtcatgnncaataaaaggtttgtcacctacgtgctg acgctggcgggctactatatgctggcggtannggtcatgttaatgctgccgattatggta aacgatatcgccggttcgcctgctgccgtgnnatggatgtacgctattgaggcgtgtctc tcgctgacgttgctctacccgattgcccgcnngagcgaaaagcgttttcggctggagcat cggctgatggccggtttgctcgtcatgtcgnngagcatgctccccatcgggatggtgggc aatttacagcagctttttacgcttatttgcnntttctacatcggctcggttatcgccgaa ccggcgcgcgaaacgctcagcgcgtcgcccnnggacgcgagggcgcggggaagctatatg ggctttagccgtctgggattagccattggcnncgcgattagttatatcggcggcggctgg ttgtttgatatgggtaaagcgcttgcgcagnntgaactaccgtggatgatgctcggtatt atcggctttatcacctttttggctttaggcnngcaatttagtcataagcgcacgccgcgc cggatgctggaacccggcgcctgaATGACCAAGTATGCCACGCTGGAAGAAGCTATCGAT GCAGCCCGGGAAGAATTTCTGGCTGACCATCAAGGCCTCGAACAAGACGAAGCGAATGTG CAGCAGTTCAACGTTCAGAAATATGTACTGCAGGATGGGGACATCATGTGGCAGGTCGAA TTTTTCGCCGATGAAGGTGAAGATGGCGAATATCTGCCGATGCTGAGTGGTGAAGCCGCA CAGAGCGTGTTTGACGGCGATTATGATGAGAAAGAGATCCGCCAGGAATGGCAGGAAGAG AATACTTTGCATGAATGGGATGAAGGGGAATACCAGCTTGAACCCCCGCTTGATACCGAG GAAGGCCGTACTGCGGCAGACGAATGGGATGAGCGTTAAATGTCACTATTAGCCAGGCTG GAACAAAGTGTACACGAAAACGGTGGGCTGATTGTCTCATGCCAACCGGTACCAGGCAGC CCTATGGATAAACCTGAAATTGTGGCTGCAATGGCACAGGCAGCGGCTTCGGCGGGTGCG GTCGCTGTGCGCATTGAAGGCATTGAGAATCTGCGGACTGTTCGTCCCCATCTTTCTGTT CCTATTATTGGGATAATTAAACGTGACCTTACAGGGTCGCCAGTCCGTATCACTCCATAT TTACAGGATGTTGACGCCCTGGCGCAGGCAGGTGCCGATATTATCGCTTTTGATGCCTCA TTCCGCTCTCGCCCGGTTGATATTGATAGTTTACTGACACGTATTCGCCTGCATGGATTA CTGGCGATGGCAGACTGTTCAACCGTGAATGAAGGCATAAGTTGCCATCAGAAAGGAATC GAATTCATTGGTACAACACTGTCTGGCTATACCGGTCCCATCACGCCGGTTGAGCCAGAT TTGGCAATGGTGACACAACTGAGTCATGCAGGTTGTCGTGTTATTGCCGAGGGGCGCTAT AACACGCCTGCACTGGCGGCCAATGCTATTGAGCATGGTGCCTGGGCAGTTACCGTTGGT TCCGCTATCACCCGTATCGAGCATATCTGTCAGTGGTTCAGTCACGCAGTAAAACGCTGA ATGAAAAATTTTAAGAAAATGATGACGCTAATGGCGCTATGTTTATCAGTTGCTATCACC ACATCAGGATATGCAACCACGCTTCCTGATATACCAGAACCACTGAAAAATGGTACTGGC GCTATTGATAATAATGGCGTGATTTATGTCGGCTTAGGTACCGCAGGGACATCCTGGTAT AAAATTGATCTTAAAAAGCAACATAAAGACTGGGAGCGTATAAAGTCGTTTCCTGGTGGA GCTCGTGAGCAATCCGTGTCGGTATTTTTAAATGATAAGCTGTATGTTTTTGGTGGCGTA GGGAAAAAAAACAGTGAATCACCGTTGCAGGTTTATAGCGATGTGTACAAATACTCACCG GTGAAAAATACATGGCAAAAAGTTGATACTATATCTCCAGTTGGATTAACAGGGCATACG GGAGTAAAATTAAACGAAACGATGGTACTTATTACCGGAGGGGTTAATGAGCATATCTTT GATAAGTATTTTATTGATATAGCGGCTGCGGATGAAAGTGAAAAAAATAAAGTCATCTAT AATTATTTTAATAAACCTGCCAAAGATTATTTTTTTAATAAAATCGTATTTATCTACAAT GCTAAAGAGAACACATGGAAGAATGCCGGTGAGCTGCCAGGCGCGGGGACGGCAGGATCG TCATCGGTAATGGAAAATAATTTCTTGATGCTGATTAATGGTGAGCTCAAACCGGGTTTA CGTACCGATGTGATTTACCGCGCCATGTGGGATAACGATAAGCTAACATGGTTGAAGAAC AGCCAGTTACCGCCATCGCCTGGAGAACAACAGCAGGAAGGGTTGGCCGGAGCATTTTCG GGCTATAGCCACGGTGTCCTGCTTGTCGGTGGTGGCGCGAATTTTCCGGGAGCAAAACAA AATTATACTAATGGAAAGTTTTATTCCCACGAAGGGATAAATAAAAAATGGCGAGATGAA GTCTATGGTTTGATTAATGGCCATTGGCAATATATGGGTAAAATGAAACAACCTCTCGGC TATGGTGTATCAGTAAGTTATGGTGATGAAGTTTTCCTTATTGGTGGTGAAAATGCTAAA GGGAAACCTGTTTCGTCTGTAACCTCCTTTACCATGCGTGATGGTAATTTATTAATAAAA TAAGTGATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACACGTCCACAAAAAAATGCT TTATTTTCAGCATGGCTGGGTTACGTTTTTGATGGCTTCGACTTTATGCTGATTTTCTAC ATTATGTATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTTGCC ACAGCGGCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGACAAA TTTGGCCGTAAGCCGTTAATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGGTTA AGTGGCCTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGTTTTATTGTCGGTATGGGG ATGGCGGGGAAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCATTTA AAATCTAAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCAGCC TATTTTATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGTTTG CTACCCGTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGGGAA GAAGCCAAACTCAGTGGTCTCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCTTTG TCAATGAAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATTGTT CTGTTCTCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTGGCG GGAGAGGGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGCACT GTATTGGGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACGTTC AGCATTGGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAAGAT AATTATTTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTTGGC GGGCTGGTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGTACC GGGCTTATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACCTGG CTTGGAATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACCGCA ACAATTCTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAAAGG TTTCAGTCAACAAAAGAATTTTAAATGAAAAAGTATCTTGCTTTCGCCGTTACGCTGCTG GGTATGGGTAAAGTCATCGCCTGTACTACCCTTTTGGTAGGCAATCAGGCTTCGGCTGAC GGCTCCTTTATTATCGCGCGCAACGAGGATGGCTCGGCAAATAACGCCAAGCATAAGGTT ATTCATCCCGTCGCGTTTCATCAACAAGGCGAGTATAAAGCACATCGCAACAATTTTAGC TGGCCGCTTCCGGAGACAGCGATGCGCTATACGGCGATTCATGACTTTGATACTAACGAT AACGCCATGGGTGAAGCCGGTTTCAATTCGGCGGGCGTCGGAATGAGCGCAACGGAAACC ATTTACAACGGCAGAGCGGCGCTGGCTGCCGATCCTTACGTGACAAAAACGGGAATCACG GAAGACGCCATTGAGTCCGTGATCCTGCCAGTGGCGCAATCGGCGCGTCAGGGCGCCAAA TTACTGGGAGATATTATTGAACAAAAAGGCGCGGGCGAAGGTTTCGGCGTCGCGTTTATT GATAGCAAAGAGATATGGTATCTGGAGACGGGAAGCGGACATCAATGGCTGGCAGTACGA CTTCCGGCAGATAGCTATTTCGTTTCCGCCAATCAGGGACGTTTACGCCATTACGATCCG AATGATAACGCGAATTATATGGCGTCACCAACGTTAGTAAGCTTTGCGAAAAAGCAGGGA TTATATGATCCGGCCCGCGGCGAATTCGACTTTCATCAAGCCTATTCGCAGGATAACAAA AACGATACCACCTATAATTATCCGCGCGTCTGGACGCTACAACACCAGTTTAATCCGCAT CTGGATACGGTCGTTAGCGAAGGGGAAACATTTTCTGTTTTTTTAACGCCAATAACGAAG ATCAGCGTGGCGGCAGTAAAAAACGCGTTACGCAATCACTATCAGGGAACGTCGCACGAC CCTTATGCCAGTCATAATCCACAAGAACCATGGCGACCTATATCCGTTTTTCGTACCCAG GAGTCACATATTTTACAGGTCAGACCGAAATTACCGCAGGCTATCGGCAACGTAGAATAC ATCGCCTATGGAATGCCATCTCTTAGCGTCTATCTCCCCTATTACCAGGGGATGCGTCAT TATCAACCCGGAGATGATAAAGGAACCGATCGGGCGAGCAACGACTCTACCTACTGGACA TTCCGCACGCTGCAAACACTGGTTATGCAAGACTACAATACGTTTGCGCCAGATGTGCAA CATGCCTGGAAAACATTTGAACAGCAAACAGCTAAGCAACAGTATAAGATGGAGCAGAGC TATCTGAGATTATATGCGTCGCATCCGAAAGAAGCACAACGCTTACTGCAAAATTTTGAA GATAAAACGATGCAAAATGCGCAGACGCTCGCCCGTCGCCTGACCAATAATATTATTACG ACAATGACTTACCGCACAGATATGAAATATCACTTTTCAAGTACGCAGCCATAAATGGGA AGACAAAAAGCAGTGATCAAAGCTCGTCGTGAAGCAAAGCGTGTGTTGAGACGAGATTCG CGTAGTCATAAGCAACGTGAAGAAGAATCGGTCACGTCACTGGTACAGATGGGCGGAGTA GAAGCCATTGGCATGGCGCGCGATAGTCGCGATACCTCTCCTGTTAAGGCGCGAAATGAA GCACAGGCGCATTATCTGAACGCTATCGACAGTAAACAGCTTATTTTTGCGACCGGCGAA GCCGGCTGCGGAAAAACATGGATCAGTGCGGCAAAGGCGGCAGAAGCATTGATTCATAAG GACGTCGAGAGGATCATTGTGACGCGTCCGGTATTGCAGGCTGATGAAGATCTTGGTTTT TTGCCCGGTGATATCGCTGAAAAATTCGCGCCTTATTTTCGTCCCGTCTACGATGTCCTG CTTAAACGGTTGGGCGCGTCCTTTATGCAATATTGTTTGCGCCCGGAAATCGGTAAGGTA GAAATTGCCCCGTTCGCCTATATGCGTGGGCGTACTTTTGAAAATGCGGTCGTGATCCTC GACGAGGCGCAAAATGTGACTGCGGCGCAAATGAAAATGTTTTTGACGCGATTAGGCGAA AATGTCACGGTCATTGTCAATGGCGATATTACGCAATGCGACCTGCCGCGCGGTGTGCGT TCCGGGTTGAGTGATGCGTTGGAACGCTTTGAAGAAGATGAAATGGTGGGGATTGTGCAT TTCAACAAAGACGACTGCGTGCGCTCGGCGCTTTGTCAGCGAACGCTCCACGCATACAGC TAAATGGGAACCACCACGATGGGGGTTAAGCTGGACGACGCCACGCGCGAACGGATCAAA ATGGCCGCGTCGCGTATCGATCGCACGCCGCACTGGTTAATAAAACAGGCAATCTTTAGC TATCTGGACAAGCTGGAAAATAGCGATACGCTACCGGAGCTACCTGCGCTGTTTGCCGGC GCGGCAAATGAAAGCGAGGAGCCGGTCGCGCCGCAGGATGAGCCGCATCAGCCCTTTCTG GAGTTTGCCGAACAGATTCTTCCCCAATCCGTCTCTCGCGCCGCCATCACCGCCGCCTGG CGCCGCCCGGAAACCGATGCGGTGTCAATGCTAATGGAACAGGCGCGCCTGTCGCCGCCT GTCGCTGAGCAGGCGCATAAACTGGCGTATCAACTGGCGGAGAAATTGCGCAATCAAAAA TCCGCCAGCGGTCGCGCGGGTATGGTGCAAGGCCTGTTGCAGGAGTTTTCCCTCTCTTCG CAAGAAGGCGTAGCGCTGATGTGTCTGGCGGAAGCGCTGCTGCGTATTCCCGACAAAGCT ACGCGCGATGCGTTAATTCGCGACAAAATCAGTAATGGCAACTGGCAGTCGCATATTGGC CGTAGCCCGTCGCTGTTTGTAAACGCCGCCACCTGGGGGCTGCTCTTTACCGGCCGACTG GTCTCAACGCATAACGAAGCCAATCTTTCGCGCTCGCTGAACCGCATTATCGGCAAGAGC GGCGAACCGTTAATCCGCAAAGGCGTCGACATGGCGATGCGTTTAATGGGCGAGCAGTTC GTGACTGGCGAAACCATTGCTCAGGCGCTGGCGAATGCCCGAAAACTGGAAGAGAAAGGG TTCCGCTATTCTTACGATATGCTGGGCGAAGCCGCGTTAACCGCCGCCGATGCGCAGGCC TATATGGTCTCTTACCAGCAAGCGATTCATGCCATCGGCAAAGCGTCTAACGGTCGCGGT ATTTACGAAGGGCCAGGCATCTCGATTAAGCTGTCCGCCCTGCATCCACGCTATAGTCGC GCGCAATACGATCGGGTAATGGAGGAGCTTTATCCGCGCCTGAAATCCCTGACGCTGCTG GCGCGCCAGTATGATATCGGTCTCAATATCGACGCCGAAGAGGCGGATCGTCTGGAGATC TCGCTTGATCTGCTGGAAAAACTCTGCTTCGAACCCGAACTGGCGGGCTGGAACGGCATT GGCTTTGTGATTCAGGCTTACCAGAAACGCTGCCCGCTGGTCATTGATTATTTAGTCGAT CTGGCCTCCCGTAGCCGCCGTCGGCTGATGATTCGTCTGGTGAAAGGCGCCTACTGGGAT AGCGAGATCAAACGCGCGCAAATGGAAGGGCTGGAGGGCTATCCAGTTTATACCCGCAAA GTGTATACCGATGTCTCTTATCTGGCCTGCGCGAAAAAACTGCTCGCCGTCCCTAATCTG ATCTACCCGCAGTTCGCGACCCATAACGCTCACACACTGGCGGCGATTTATCATCTGGCC GGGCAAAATTACTATCCGGGTCAGTACGAATTCCAGTGCCTGCACGGCATGGGAGAACCG CTGTATGAACAGGTCACCGGTAAAGTGGGGGACGGAAAACTTAACCGTCCCTGCCGTATT TACGCGCCGGTGGGAACACACGAAACCCTGCTGGCCTATCTGGTACGACGCCTGCTGGAA AACGGCGCCAACACCTCTTTTGTCAACCGCATCGCCGATGCCACCCTACCGCTCGATGAA CTGGTGGCCGACCCGGTCGAGGCCGTGGAAAAACTGGCGCAGCAGGAAGGTCAGGCTGGC ATACCGCATCCAAAAATTCCGCTGCCGCGCGATCTGTACGGCGAAGGTCGGATAAACTCC GCCGGACTTGATTTAGCGAATGAACATCGCCTCGCCTCGCTTTCTTCTGCCCTGTTAAGC AACGCCATGCAGAAATGGCAGGCCAAACCTGTGCTGGAACAACCGGTGGCCGACGGTGAG ATGACGCCGGTTATCAACCCGGCGGAACCGAAAGATATTGTTGGCTGGGGACGCGAAGCG ACAGAAAGCGAGGTTGAACAGGCGTTGCAAAACGCGGTCAATCAGGCGCCGGTTTGGTTT GCGACGCCGCCGCAAGAACGCGCCGCTATTTTGCAGCGGGCGGCGGTATTGATGGAAGAC CAAATGCAGCAGTTGATTGGCCTGTTGGTGCGTGAAGCGGGGAAAACGTTCAGCAACGCC ATTGCCGAAGTGCGCGAAGCGGTAGACTTCCTCCATTATTATGCCGGTCAAGTGCGTGAC GATTTCGATAACGAAACGCATCGCCCGTTAGGGCCGGTGGTCTGTATCAGTCCGTGGAAC TTTCCGCTGGCCATTTTCACTGGCCAAATCGCCGCCGCGCTGGCGGCAGGTAACAGCGTT CTGGCGAAACCGGCAGAGCAGACATCGCTGATTGCCGCCCAGGGCATTGCCATTTTGCTG GAAGCGGGCGTACCGCCGGGCGTCGTGCAACTGTTGCCGGGACGGGGAGAAACCGTCGGC GCCCAGCTTACCGCCGATGCGCGTGTACGCGGCGTGATGTTTACCGGTTCCACGGAGGTC GCGACGTTGTTGCAGCGCAACATCGCCACGCGTCTTGACGCCCAGGGGCGCCCTATTCCG TTGATTGCGGAAACCGGCGGTATGAACGCTATGATTGTCGACTCTTCCGCGCTCACCGAG CAGGTGGTCGTGGATGTGCTGGCTTCCGCCTTCGACAGCGCCGGACAACGCTGTTCCGCG CTCCGCGTGCTGTGTTTGCAGGACGATATCGCCGAACATACGCTGAAAATGTTACGCGGC GCGATGGCGGAGTGTCGGATGGGGAATCCAGGCCGTCTGACGACCGATATCGGGCCGGTG ATCGATAGCGAGGCCAAAGCCAACATTGAACGTCATATCCAGACGATGCGCGCCAAAGGC CGCCCGGTTTTCCAGGCCGCGCGTGAAAACAGCGATGACGCGCAGGAATGGCAGACCGGT ACGTTTGTTATGCCCACGCTTATTGAGCTGGAAAACTTCGCAGAACTGGAAAAAGAGGTC TTCGGGCCCGTGCTGCACGTCGTGCGTTATAACCGTAACCAACTGGCGGAGCTTATCGAA CAGATTAACGCTTCCGGCTACGGGCTAACGCTGGGCGTACATACCCGTATTGATGAAACC ATTGCGCAAGTCACCGGTTCCGCCCATGTCGGCAACCTGTACGTTAACCGTAATATGGTG GGCGCGGTCGTCGGCGTCCAGCCGTTTGGCGGCGAAGGCCTGTCCGGCACCGGGCCAAAA GCGGGAGGGCCGCTCTATCTCTACCGCCTGCTGGCACACCGCCCGCCCAATGCGCTCAAT ACGACGCTGACTCGTCAGGATGCGCGTTACCCGGTGGATGCGCAGCTTAAAACCACGCTA CTCGCGCCGTTGACCGCTCTGACGCAATGGGCGGCGGATCGCCCGGCGCTACAGACGCTC TGCCGACAATTCGCCGATCTGGCGCAGGCCGGCACGCAGCGCCTGCTACCGGGGCCGACC GGCGAGCGTAATACCTGGACGCTGTTGCCGCGTGAACGGGTGTTATGCCTGGCTGATGAT GAACAGGACGCGTTGACGCAGCTTGCCGCCGTTCTCGCCGTCGGCAGTCAGGCGCTATGG TCAGACGACGCCTTCCACCGCGATCTGGCGAAACGTCTCCCCGCCGCCGTCGCGGCGCGT GTCCAGTTTGCGAAAGCGGAAACGCTGATGGCGCAGCCGTTTGACGCGGTGATTTTCCAC GGCGACTCCGACAAGCTGCGAACCGTGTGCGAAGCCGTCGCCGCCCGCGAAGGCGCGATA GTGTCGGTACAGGGGTTCGCCCGCGGCGAAAGCAATATGCTGCTGGAACGGCTCTATATT GAACGTTCGCTGAGCGTAAACACTGCCGCCGCTGGCGGTAATGCCAGCCTGATGACAATT GGCTAAATGGCTATTAGCACACCGATGTTGGTGACATTCTGTGTCTATATTTTTGGCATG ATATTGATTGGGTTTATCGCCTGGCGCTCAACCAAAAACTTTGATGACTATATTCTTGGC GGTCGCAGCCTGGGGCCGTTTGTTACGGCTTTATCAGCCGGCGCGTCGGATATGAGCGGC TGGCTGTTAATGGGGCTGCCTGGCGCTATCTTTCTGTCGGGGATCTCTGAAAGCTGGATC GCCATTGGCCTGACGTTAGGCGCATGGATTAACTGGAAGCTGGTGGCCGGGCGCCTGCGC GTGCATACCGAATTTAACAATAACGCGCTCACGCTGCCGGACTATTTTACCGGTCGGTTT GAGGATAAGAGCCGAGTCCTGCGTATTATTTCCGCGCTGGTCATTCTGCTGTTTTTCACT ATCTATTGCGCATCAGGTATTGTCGCTGGGGCACGACTGTTCGAAAGCACCTTCGGTATG AGCTATGAAACCGCACTGTGGGCGGGGGCCGCGGCAACCATTATTTATACCTTTATCGGC GGGTTTCTTGCCGTTAGCTGGACGGATACCGTTCAGGCCAGCCTGATGATTTTTGCGTTA ATCCTGACGCCGGTGATGGTTATTGTCGGCGTAGGCGGTTTTAGCGAGTCGCTGGAAGTG ATCAAGCAAAAGAGCATCGAGAATGTCGACATGCTCAAGGGGCTGAATTTTGTCGCTATT ATTTCTCTGATGGGCTGGGGGCTGGGTTACTTCGGTCAGCCGCATATCCTGGCGCGCTTT ATGGCGGCGGATTCCCATCACAGTATTGTTCATGCGCGTCGTATCAGTATGACCTGGATG ATTCTGTGTCTGGCGGGCGCGGTGGCGGTGGGCTTCTTTGGCATTGCGTACTTTAACAAT AACCCCGCGCTGGCCGGGGCGGTGAACCAAAACTCAGAACGCGTATTTATTGAACTGGCG CAGATCCTGTTTAACCCGTGGATTGCCGGTGTTCTGCTGTCTGCTATCCTGGCGGCGGTG ATGTCGACGTTGAGCTGTCAGTTGCTGGTATGCTCCAGCGCGATTACGGAAGATTTATAT AAGGCTTTTCTGCGTAAAAGCGCCAGCCAGCAAGAGCTGGTATGGGTAGGGCGAGTGATG GTGCTGGTGGTAGCGCTGATCGCCATTGCGCTGGCGGCGAATCCTGATAACCGTGTGCTG GGGCTGGTGAGCTACGCCTGGGCTGGATTCGGCGCGGCATTTGGACCTGTTGTCCTGTTT TCTGTGATGTGGTCGCGTATGACACGTAACGGCGCGCTGGCGGGAATGATTATTGGCGCG GTGACGGTTATCGTCTGGAAACAATATGGCTGGCTGGATCTGTATGAGATTATCCCTGGC TTCATTTTCGGCAGCCTGGGGATCGTAATCTTTAGCCTGCTTGGCAAAGCGCCGACAGCA ACGATGCAGGAACGCTTTGCAAAAGCGGACGCGCATTATCATTCCGCGCCGCCGTCGAAG CTACAGGCGGAATAAATGGCGGGTAAACTGCGGCGTTGGCTGCGTGAAGCCGCGGTTTTT CTGGCGCTCCTCATCGCGATAATGGTGGTCATGGACGTCTGGCGCGCGCCGCAGGCGCCT CCGGCGTTTGCCGCGACACCATTACATACGCTGACGGGAGAGTCGACAACTCTGGCGACC TTGAGCGAGGAACGCCCCGTACTGCTCTATTTTTGGGCCAGCTGGTGCGGGGTATGCCGC TTTACCACGCCTGCGGTCGCTCACCTGGCGGCGGAAGGGGAAAACGTCATGACCGTTGCG CTCCGCTCCGGCGGTGATGCTGAGGTTGCCCGCTGGCTGGCGCGCAAGGGCGTTGACTTC CCGGTCGTCAATGATGCTAACGGCGCCTTATCCGCTGGCTGGGAAATCAGCGTGACGCCA ACGCTGGTGGTGGTTTCACAAGGTCGGGTTGTGTTCACCACCAGCGGCTGGACCAGCTAT TGGGGCATGAAGCTTCGGCTGTGGTGGGCAAAAACGTTCTGAATGATGAAAAAAAGCGTC GCTATGCTGGCGGTTTGTATGCTGGCGCAAAGCCACCTTGCCATTGCTGCCGGTGCTCCT GCGCCTCAAGAGATCAACATTGTTTTACTGGGCACCAAAGGCGGGCCTTCTTTGCTCAAT ACAGCCAGACTACCGCAAGCGACGGCGCTCACTATCGGCGATAAGATATGGCTGATAGAT GCCGGCTACGGCGCCAGTCTGCAACTGGTGAAAAATGGCATTCCACTGCGCAACATCAAT ACTATTTTGCTCACCCATCTGCACAGCGACCACATACTGGATTATCCTTCCTTGCTGATG AATGCCTGGGCAAGTGGCCTGAAAGACCATACCATACAGGTTTATGGCCCGCCGGGAACC CAGGCGATGACGAAGGCTAGCTGGAAGGTCTTTGACAGGGATATCACGTTACGCATGGAA GAAGAGGGGAAACCCGATCCGCGCAACCTGGTTAAGGCGACCGATATCGGCCAGGGCGTC ATCTATAAAGATGAACTGGTCACAATAAGCGCGCTGAAAGTGCCTCATTCCCCTTTCCCG GACGGTGAAGCGTTTGCTTACCGTTTTGATACTCAGGGTAAGCGAATCGTCTTCTCTGGC GATACGTCCTGGTTTCCTCCGCTTGCAACGTTTGCCCAGGGGGCGGATATCCTGGTACAT GAGGCGGTACATGTCCCTTCGGTAGCAAAACTGGCTAATAGTATTGGCAACGGAAAAACG CTGGCTGAAGCGATTGCGTCGCATCACACCACGATTGAAGATGTCGGTAAGATTGCTCGC GAGGCCCACGTGAAAAAACTGGTGTTAAGTCATCTGGTGCCTGCGACGGTTGCGGATGAC GTCTGGCAACAGGAAGCCATGAAAAATTACCCGGGCCCTGTCATTGTCGGTCATGACAAT ATGACGATAAGCGTACCGTAAATGTCGCAACGCACAGAGAAAAAAATCGGGAAACGTTCG CAGGCCACCGGTGCAAAACGGCAGCTTATCTTAACCGCCGCGCTTGCCGTTTTTTCCCAG TATGGCATTCATGGCGCGCGTCTTGAACAGGTCGCCGAGCGGGCAGGCGTCTCCAAAACC AATCTGCTTTATTATTATCCCTCGAAAGAGGCGCTGTATGTCGCGGTAATGCGACAGATT CTGGATGTCTGGTTGGCGCCGCTCAAGGCGTTTCGCGCAGAATTTTCCCCTCTGGAGGCC ATCAAAGAGTATATCCGTCTCAAGCTGGAGGTTTCGCGTGATTATCCGCAGGCGTCGCGG CTCTTCTGCATGGAGATGCTGGCGGGCGCGCCGCTCTTAATGGATGAACTGACCGGCGAT CTAAAAGCGTTGATAGATGAAAAATCCGCGCTGATTGCCGGATGGGTGCACAGCGGGAAA CTCGCGCCCGTTTCTCCGCATCATTTGATCTTCATGATTTGGGCCGCCACGCAACATTAC GCCGATTTCGCCCCTCAGGTTGAAGCGGTAACCGGCGCGACGCTTCGCGATGAAGCCTTT TTCAACCAAACGGTCGAAAGCGTTCAGCGCATTATTATTGAAGGGATTCGCGTGCGTTAA ATGGCGAAACAACAACGGATGGGCTGGTGGTTTCTTTGCCTTGCATGTGTCGTGGTAATG GTTTGTACCGCGCAACGCATGGCGGGCCTGCACGCCTTGCAGATGCAGGCGACGGCCTCT GCTGCGGTGGTCAGCGCTCCCTCCTCGACAGATGACGGCTCGCCGGTCACTCCCTGCGAA TTAAGCGCCAAGTCGCTGCTGGCGGCGCCTCCAGTACTCTTTGAAGGTGCTATCCTTGCG CTTTATCTACTGCTTTCCTTACTGGCGCCTGTCCGGGTCATGCGCCTGCCGTTTTCGCCT CCACGGGCTATTTCGCCGCCCACATTACGGGTACATCTACGATTTTGTGTCTTCCGTGAA TGAATGATGATTTTATTCAGGCGGATACTGTTCTGCCTGTTATGGCTTTGGCTGCCCGTC TCCTGGGCGGCGGAAAGCGGCTGGCTGCGTTCGCCCGATAACGACCATGCCAGCATACGG CTACGTGCCGATACGTCCGCTAACAGTGAGACCCGGCTGTTGCTGGATGTCAAACTGGAA AACGGCTGGAAAACCTACTGGCGCGCGCCGGGGGAAGGGGGCGTGGCACCCTCTATCGCC TGGAAAGGCGACATGCCTGAGGTAAGCTGGTTCTGGCCAACCCCCTCGCGCTTTGATGTG GCGAATATCACCACCCAGGGATATCACGACGAGGTGACCTTTCCGATGATCGTGCGCGGT ACGCCGCCGGCGACCTTGCGCGGTGTGTTGACGTTATCAACCTGCAGCAATGTTTGTCTG TTGACCGATTACCCCTTTTCCGTGACGCCCACTGTGCAGAATGCCGATTTTGCCCATGAC TATGCGCGGGCGATGGGTAAAGTTCCGCTCCGCAGTGGGCTAACGGACTCGCTTGACGTT GGCTATCGCCCGGGAGAACTGGTGGTCACTGCTACGCGAGCGGCGGGCTGGTCATCGCCC GGGCTCTATCTTGACACCATAGATGACGTCGATTTTGCGAAGCCTCGCCTGCGCGTAGAG GGCGACAGGTTACAGGCGACGGTGCCGGTGACGGACAGTTGGGGCGAAAAGGCGCCCGAT TTGCGCGACAAATCGCTGACCCTCGTGTTAGCCGATGGCGCTATCGCCCAGGAGAGCACG CAAACCATTGGCGCTGCGCCAGCGCAAACGCCGGACAATGCGGCGCTACCTTTCTGGCAA GTTGTAATGATGGCGCTAATCGGCGGACTGATTCTTAATTTAATGCCCTGCGTACTGCCT GTTCTGGGCATGAAACTTGGCTCTATTTTATTGGTAGAGGAAAAAAGCCGCTCTCACATC AGGCGACAATTTTTGGCTTCGGTCGCCGGTATCATTGCGTCATTTATGGCGCTGGCGGCG TTTATGACCCTCCTTCGCCTGTCAAACCATGCGCTGGCCTGGGGAGTCCAGTTCCAGAAT GCATGGTTTATTGGTTTTATGGCGCTGGTGATGTTGTTGTTTAGCGCCAGCCTGTTCGGG CTTTTTGAGTTCAGGCTTCCCTCATCTATGACCACGAAACTGGCCACTTACGGCGGTAAC GGTATGTCGGGACATTTCTGGCAGGGGGCGTTCGCCACGCTGCTGGCGACGCCTTGTAGC GCGCCGTTTCTGGGCACGGCGGTCGCGGTGGCGCTCACGGCGTCGCTGCCGACGCTGTGG GGGCTGTTCCTTGCGCTTGGCCTGGGAATGAGCGCGCCGTGGCTACTGGTCGCGATACGA CCAGGGCTTGCGCTACGTTTACCGCGCCCCGGGCGTTGGATGAATGTCCTGCGCAGGATC CTCGGTCTGATGATGCTGGGGTCGGCTATCTGGCTGGCGACGTTACTCCTGCCGCATTTC GGCTTCACTGCGTCAAAGAGCGCGCAAGACACGGTTCAGTGGCAACCGTTGAGTGAACAG GCAATCCAGTCGGCGCTGGCGCAGCATAAGCGGGTATTTGTCGATGTCACTGCGGACTGG TGTATTACCTGTAAAGTGAATAAATACAACGTCCTGCAAAAAGAGGATGTGCAGGCCGCC TTGCAACAGCCGGATGTTGTGGCGCTGCGGGGAGACTGGACGCTGCCGTCCGATGCCATT ACAGATTTTCTGAAAACGCGCGGCCAGGTCGCCGTGCCGTTTAATCAGGTATATGGCCCC GGTTTGCCGGAAGGGGAGGCACTGCCCACTTTGCTGACCCGCGATGCGGTATTACAAACG TTGAAAAAAGCGAAAGGAATAACCCAATGAATGAAATACATGATTGTTTTACTGCTGGCG CTGTTTTCGACGCTGAGCATCGCGCAAGAAACCGCTCCTTTTACGCCGGATCAGGAAAAG CAGATTAAAAATCTGATCCATGCGGCGTTGTTTAACGATCCTGCCAGCCCGCGGATAGGC GCTAAACACCCTAAGCTGACGCTGGTGAACTTTACGGATTACAACTGCCCGTACTGCAAA CAGCTCGATCCGATGCTGGAAAAGATTGTGCAGAAATATCCTGACGTTGCGGTCATTATT AAACCGCTGCCATTCAAAGGAGAGAGTTCCATACTGGCGGCGCGTATTGCGCTGACCACC TGGCGCGATCATCCGCAACAGTTCCTCGCGCTACATGAAAAACTTATGCAAAAGCGCGGT TACCATACGGATGACAGTATTAAACAGGCCCAGCAGAAAGCAGGGGCGACGCCAGTGACG CTGGATGAAAAAAGCATGGAAACGATACGCACTAATTTGCAGTTGGCAAGACTGGTCGAC GTGCAAGGAACGCCAGCGACGATCATTGGCGACGAGCTGATTCCGGGCGCAGTGCCCTGG GATACGCTGGAAGCGGTGGTGAAAGAAAAACTGGCGGCTGCCAATGGCGGGTAAATGATT GCACATTCTTTCGGCATCGTTAATTATTTTGTATTATTTGGCTACCTCCTGGCCATGATG GTAGTCGGTGTCTATTTTTCCAGACGGCAAAAAACAGCAGACGATTATTTTCGCGGTGGT GGCCGGGTTCCTGGTTGGGCGGCTGGGGTCAGTGTATTTGCTACTACGTTAAGCTCAATT GCATTTATGTCAATTCCTGCCAAAGCGTTTACTTCCGACTGGACGTTTATCATTGGTCAG GATCTGGCTATCGCAATTTTACCGCTGGTTTTTTATTTCTATATTCCGTTTTTTCGGAAA GTGAAAGTCACATCAGCCTATGAATATCTCGAAGCACGGTTCGATGTGCGCTGCCGTCTG GTCGCCAGCATGTCATTTATGTTGTTTCATATTGGACGTATCGCCATTATCACTTTCCTC GCCGTGCTGGCCTTGCGCCCCTTCATCGCTATAGACCCGGTGATTTTGGTACTGTTGATT GGTGTGATGTGTATCATTTATACCTGGATGGGGGGGAATTGAATGGAAAGTCTATTAAAT CGTTTATATGACGCGTTAGGCCTGGATGCGCCAGAAGTTGAGCCACTGCTTATCATTGAT GATGGGATACAGGTTTATTTTAATGAATCCGATCATATACTGGAAATGTGCTGTCCCTTT ATGCCACTGCCTGACGACACTCTGACTTTGCAGCATTTTTTACGTCTTAACTACGCCAGC GCCGTCACTATCGGCGCTGATGCAGACAATACTGCTTTAGTGGCGCTTTATCGCTTGCCG CAAACCAGTACCGAAGAAGAGGCGCTCACTGGTTTTGTATTATTCATTTCAAACGTGAAG CAATTGAAAGAGCATTATGCATAAATGAAATACGACCTTATTATTATCGGCAGCGGTTCG GTTGGCGCCGCCGCTGGTTATTACGCCACCCGCGCCGGGCTAAAGGTCCTGATGACCGAT GCGCATATGCCGCCTTATCAACAGGGCAGCCACCACGGCGATACCCGTCTTATCCGCCAC GCTTATGGTGAAGGCGAAAAATATGTCCCGCTGGTGCTTCGCGCCCAGACGCTTTGGGAT GAGCTCTCCACACACAATGAAGAGCCTATTTTTGTCCGCTCCGGCGTCGTCAACCTCGGC CCGGCCGATTCCGCTTTCTTAGCCAACGTCGCACGAAGCGCGCAACAGTGGCAATTGAAC GTCGAGCGCCTGGACGCGACGGCCCTCATGACGCGCTGGCCGGAAATTCGCGTGCCCGAT AATTATATCGGGCTGTTTGAAGCTGACTCCGGTTTCCTGCGCAGCGAATTAGCCATTACC ACATGGCTTCGTCTGGCCCGAGAGGCAGGCTGCGCACAGCTATTCAACAGCCCGGTAAGC CATATTCACCATGATGATAACGGTGTGACGATAGAGACGAGTGAAGGCTGCTACCACGCC AGCAAAGCGCTGATTAGCGCGGGCACCTGGGTCAAAACGCTGGTACCGGAGCTGCCCGTT CAGCCCGTACGTAAAGTTTTTGCCTGGTTTAAGGCGGATGGACGTTACAGCACTAAAAAC CGCTTTCCGGCCTTTACCGGCGAAATGCCCAACGGCGATCACTATTACGGTTTCCCGGCG GAGAACGACGAGTTAAAAATCGGCAAACACAATGGCGGGCAGCGAATACAGGCACCGGAA GAGCGCAAGCCCTTTGCCGCCGTTGCCAGCGATGGCGCGGAAGCATTTCCTTTCCTGCGT AACGTACTGCCGGGTATCGGCGGTTGTTTACATGGGGCGGCATGTACCTATGATAATTCG CCGGACGAGGATTTTATTATCGATACGCTGCCTGGCCATGAGAATACGCTTGTCATCACT GGACTCAGCGGACATGGTTTTAAATTCGCCCCGGTGTTAGGAGAAATCGCTGCGGATTTT GCGTTGGGAAAAACGCCCTCCTTTGATCTGACGCCGTTCCGGCTTTCCCGTTTTAGCCAA TAAATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAA AGCCTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCG GCTAAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGG GGGAATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTA CAGCGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACG TCAATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAA GAAGAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACT CAGCAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGA GATGCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACG CATAACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCA AAAGATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAAT ATTCATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGAT AAAACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCG CTTCTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTT AGTAAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTA TCCGTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGAT CAAATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGC AATAAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTG GGTGTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAAT GCCGAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGC TGGGTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCG CGCCAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTAT AAACTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAAT TGTAAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATT TCTTTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAG AAAATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACG GGCGGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTAT CAAAAACGAGTTGGGGATGATAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATC ACATCTTGAATGAAACGATATATACTGGCTACCGCGATAGCGTCTCTTGTTGCAGCCCCG GCAATGGCGCTGGCCGCTGGCAGCAATATTCTCAGCGTACATATTCTCGATCAGCAAACA GGCAAACCAGCGCCCGGCGTGGAGGTGGTACTGGAGCAGAAAAAGGATAACGGATGGACG CAATTAAACACCGGGCATACCGACCAGGATGGACGAATTAAAGCACTGTGGCCCGAAAAA GCTGCCGCGCCGGGGGATTATCGCGTTATTTTTAAAACCGGCCAGTATTTTGAAAGTAAA AAACTGGACACGTTTTTCCCGGAGATTCCCGTCGAGTTTCATATCAGCAAAACGAATGAG CACTATCATGTGCCGCTGTTATTAAGTCAGTATGGTTATTCAACCTATCGCGGGAGCTAA ATGGCAAAGATTCTGGTGCTCTATTATTCCATGTACGGACACATTGAAACCATGGCGCAC GCGGTGGCGGAAGGGGCAAAGAAAGTCGACGGCGCAGAGGTCATTATAAAGCGTGTGCCA GAAACAATGCCGCCTGAAATCTTCGCAAAAGCTGGCGGTAAAACGCAAAACGCACCGGTT GCCACCCCACAGGAGCTGGCGGATTACGATGCCATTATTTTTGGTACGCCAACCCGGTTT GGCAATATGTCAGGCCAGATGCGTACCTTCCTGGACCAAACCGGCGGACTGTGGGCATCC GGCGCGCTATACGGCAAGCTCGGCGGCGTGTTCAGTTCTACCGGAACGGGCGGCGGCCAG GAGCAGACCATCACCTCGACCTGGACTACGCTTGCCCATCATGGGATGGTGATTGTCCCG ATAGGCTATTCCGCACAGGAACTGTTTGACGTCTCCCAGGTTCGCGGCGGTACGCCTTAC GGCGCAACGACTATCGCTGGAGGCGACGGTTCACGTCAACCAAGCCAGGAGGAACTCTCT ATCGCTCGCTATCAGGGGGAATACGTCGCCGGTCTGGCAGTCAAACTCAACGGCTAAATG GAGCCTCAACCCCCACGTCTGAAACCCGGAAAAATCCTTGACACTCTGGGTGCTATGCAA AAAAGCCTGACACGTGCCTCGCAGCGTATTGCGCAATATATTTTAGCCTTCCCCAGACAG GTGACACAGTCATCTATTGCGGATTTGTCGCGCGACACACAGGCCGGAGAAGCCACGGTT ATTCGCTTTTGTCGCACCCTGGGCTATAAAGGTTTTCAGGATTTTAAAATGGACCTGGCC ATTGAACTTGCCACTACCGAGTCTGATGACAGTAGTCCTCTACTGGATGCCGAAGTTAGC GAATCCGACGATGCCCACGCGATTGGTTTAAAATTGCAGAACACCATTAGTAATGTATTA TCTGAAACGCTAAATCTGCTGGATATGCAACAGGTTCTCGGTGTCGTGGACGCCCTACGT CACTGTCACTCAGTTTATATGTTTGGTGTGGGCTCATCGGGGATCACGGCGCTGGATATG AAACACAAGCTAATGCGTATGGGTTTACGGGGCGATGCGGTAAGCAATAACCATTTTATG TACATGCAGGCTACGCTATTGAAAGCAGGCGATGTCGCGATGGGTGTCAGTCACTCGGGC ACATCGCCAGAAACAGTGCATTCACTCCGATTGGCCCGACAGGCTGGCGCCACCACAGTC GCCATTACCCATAATCTGGGTTCTCCATTATGTGAAGAGGCCGATTTTTGCCTGATCAAT GGTAATCGGCAAGGAATGTTGCAGGGTGACTCGATCGGTACGAAAGCCGCGCAGCTTTTC GTCTTTGACCTGCTCTATACCCTTCTTGTACAGTCCTCGCCGGAACAGGCCCGAGAAAGC AAATTACGGACAATGAATGCCCTGGACATGACAAAATAAATGAAGAAACTGCCCGGCTTT ACGCAAGATTACTTACTCAGCAAGGCGACGACCCTGCCTGATAAAACACGCCTGGAGCGT GCCGTTGAACCGCTATGCGCGCGCCATCCCGGAGAGTGCGGCATTCTTGCGCTGGATAAC AGTCTGGACGCTTTTGCCGCCCGCTACCGCCTGACCGAAATGGCGGCGCGGACGCTGGAT GTGCAGTATTATATTTGGGAAGACGATATGTCCGGGCGGCTGCTCTTTTCGGTTCTGCTG TCGGCGGCGAAGCGCGGCGTTCATGTTCGTCTGCTGCTGGATGATAACAATACGCCTGGT CTGGATGATACGTTGCGCTTGCTGGATAGCCATCCTAATATCGAAGTTCGTCTGTTTAAT CCTTTCTCTTTTCGTACGCTACGCGCGCTGGGATATTTGACGGATTTTGCGCGGCTGAAT CGGCGGATGCACAATAAAAGTTACACTGCCGACGGCGTAGTGACGCTGGTCGGTGGGCGC AACATCGGCGATGCCTATTTCGGCGCTGGCGAGGAGCCGCTATTTTCCGATCTGGACGTG ATGGCCATTGGCCCGGTGGTCAATGATGTCGCCAATGATTTTGAACGTTACTGGCGCTGT AGTTCAGTGTCGACATTGCAGCAAGTATTATCCCTTTCTGAGCAGGAACTGACGCAGCGT ATCGAACTTCCCGAATCCTGGTATAACGATGAGATCACCCGCCGTTATCTGCATAAGCTG GAAACCAGCCAGTTTATGGCGGATCTCGATCGCGGAACGTTGCCGCTGATTTGGGCAAAA ACACGCTTGCTTAGCGATGACCCTTCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTT CTTCCGCAGCGATTATTTGACGTGATGGGGTCGCCGACGGAGCGTATCGACATTATTTCC GCTTACTTTGTCCCTACGCGCGCAGGCGTGGCGCAGTTGCTTAATCTGGTCAGGAAAGGT GTGAAGATCGCCATCTTAACTAACTCTCTGGCGGCCAACGATGTGGCGGTCGTTCACGCA GGGTACGCGCGCTGGCGCAAGAAATTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAA CCGACCCGCGAACATGAAACCGCCGTACATGATCGCGGACTCACCGGGAACTCAGGTTCC AGCTTACATGCTAAAACGTTCAGTATTGATGGTAGTAAGGTGTTTATCGGGTCGCTTAAT TTTGATCCCCGTTCAACGCTTTTAAATACCGAAATGGGCTTTGTCATTGAAAGTGAAACG CTGGCGACGCTTATTCATAAGCGTTTTACGCAGAGCCAACGCGATGCGGCCTGGCAACTG CGGCTGGATCGCTGGGGACGAATTAACTGGATCGATCGTCAGCAAGAAGAGGAAAAGGTG TTAAAGAAAGAACCCGCTACGCGTTTCTGGCAGCGAGTTCTGGTACGGTTGGCGGCAATT TTACCTGTGGAATGGTTGCTGTGAATGCCAACTCAAGAAGCAAAAGCGCACCGCGTCGGC GAATGGGCAAGCCTGCGTAATACGTCGCCGGAAATTGCCGAAGCCATTTTTGAAGTCGCT CACTATGACGAGAAACTGGCAGAAAAAATATGGGAAGAAGGTAGCGATGAGGTGCTGATC AAAGCCTTTGAGAAAACGGACAAAGACTCGCTCTTCTGGGGCGAACAAGTCATCGAACGT AAGAACGTATAAATGTATCCCGTTGACCTGCATATGCATACCGTCGCGAGCACTCATGCC TACAGTACTCTGAGCGATTATATCGCGGAAGCCAAACGCAAAGGCATGAAACTTTTTGCG ATTACCGATCATGGTCCGGACATGGAAGATGCGCCGCATCACTGGCAGTTTATTAACATG CGCATCTGGCCGCGTCTGGTTGACGGCGTGGGGATACTGCGTGGCATGGAGGCGAATATC AAGAATATTAACGGTGAAATTGATTGTTCCGGAAAGATGTTCGACTCGCTGGATCTGATT ATCGCAGGCTTTCATGAGCCCGTTTTTGCGCCGCATGATAAAGAAACGAATACTCAGGCG ATGATCGCGACCATCGCCAGCGGCAAGGTGCATATAATTAGTCACCCGGGAAATCCAAAG TATCCAGTGGAGGTTAAAGCCATCGCGCAGGCGGCGGCGAAACACCAGGTAGCGCTGGAA ATCAACAACTCTTCTTTTCTGCATTCGCGTAAAGGAAGCGAAGATAAGTGCCGCGCGGTC GCTGCCGCCGTACGCGATGCGGGAGGCTGGGTAGCGTTAGGCTCTGAGTCCCATACGGCC TTTACGCTTGGCGATTTCACCGAATGCCGGAAAATTCTGGATGCGGTGAATTTTCCGGAA GATCGAATCCTGAACGTCTCTCCGCAGCGCTTACTGGCCTTTCTCGAGTCACGCGGTATG GCGCCTGTACCGGAATTTGCCGAACTTTAAATGAATGAGTTTTCAATCCTGTGCCGTGTG CTGGGATCGTTGTTTTACCGCCAAGCGCAAGATCCTTTACTGGTTCCGCTGTTTACGTTA ATCCGTGAAGGTAAACTGGCGGCAGACTGGCCGCTGGAGCAGGATGACATGCTGGCGCGT TTACAGAAAAGCTGCGATATCACGGAGATTTCCACTGATTACAATGCGTTATTTGTTGGG GAAGAGTGCGCGGTAGCGCCATACGGCAGTGCGTGGGTCGAAGGCGCGGAAGAGTCTGAG GTGCGCGCTTTTTTAACGTCGCGAGGGATGCCGCTGGCCGATACGCCTGCCGATCACATT GGCACTTTATTGCTCGCGGCCTCCGGGCTGGAAGATCAGTCTGCCGAAGATGAAAGTGAA GCGCTGGAAACCTTATTTGCCGATGATCTGCTTCCCTGGTGCAATACCTTCCTCGGTAAA GTTGAAGCCCATGCCGTTACGCCAGTCTGGCGCACTCTGGCGCCGCTAACGCGTGATGCG ATAGGGGCCATGTGGGATGAACTTGAGGAAGAAGATGAAGAATAAATGATGCGCGCGATG AACATACTTCTTTCTATTGCTATCACTACGGGCATCCTTTCTGGAATATGGGGATGGGTG GCCGTCTCCCTGGGGTTACTAAGCTGGGCCGGTTTTTTAGGCTGTACGGCTTATTTGGCC TGTCCGCAGGGCGGCTTTAAGGGATTGTTGATTTCCGCCTGTACGCTGTTAAGCGGGATG GTGTGGGCGCTGGTCATTATTCACGGTAGCGCGTTGGCGCCGCATCTGGAAATTGTGAGT TACGTGTTGACGGGGATCGTGGCATTCCTGATGTGTATCCAGGCAAAGCAGCTATTGCTT TCTTTTGTTCCGGGAACATTTATCGGCGCCTGCGCGACATTTGCAGGGCAGGGTGAGTGG CGGTTGGTATTACCGTCGCTGGCGCTGGGGCTAATCTTTGGCTATGCCATGAAAAAGAGT GGGCTATGGCTGGCATCACGCCGCGAGCAACATTCAGCGAATACGGCGGTCACAAAGTAA ATGAAAAAAAACCTGCTGGGATTCACCCTCGCATCCTTGTTATTCACGACCGGTTCCGCC GTGGCGGCGGAGTATAAAATTGATAAAGAAGGCCAACATGCGTTCGTCAATTTCCGCATC CAGCATCTGGGCTACAGCTGGCTATACGGCACCTTTAAAGATTTCGACGGCACGTTCACT TTTGACGAAAAAAATCCGTCAGCAGACAAAGTGAATGTGACCATTAACACCAATAGCGTC GACACTAACCATGCCGAACGTGACAAACACCTGCGTAGCGCGGAGTTTCTTAATGTTGCG AAATTCCCGCAGGCAACCTTCACCTCTACCAGCGTGAAAAAAGAGGGCGATGAACTGGAT ATTACCGGCAATCTGACGCTCAATGGCGTGACTAAACCGGTGACGCTGGAAGCGAAGCTG ATGGGCCAGGGCGACGATCCGTGGGGCGGTAAGCGCGCGGGCTTTGAGGCCGAAGGAAAA ATTAAGCTGAAAGATTTCAATATAACTACCGATCTCGGCCCAGCCTCACAAGAGGTGGAG CTTATCATCTCAGTAGAAGGCGTTCAGCAGAAGTAAATGTTACTGATGATGGCGCTGATC GTGCGTATTATCTGGCGGCTTTATTCTCCGCCGCCCGTTGCGTTGACCAGCTATTCCCGT TTAACGCGCATTGGCGCCGCCGCGGGTCATATCCTTCTGTATCTCCTGCTCTTTGCGATA ATCATTAGCGGCTACCTGATTTCCACCGCCGACGGTAAACCGATTAGCGTCTTTGGCTGG TTTGAGATTCCGGCCACGCTTACGGACGCGGGCGCGCAGGCTGACATCGCCGGAACACTG CATCTGTGGTTTGCCTGGTCGCTGGTCATTATCTCGCTCTCGCATGGGGTTATGGCGCTA AAACACCATTTCATCGATAAAGACGACACACTGAAACGTATGACAGGAATGTCGTCATCT GACTATGGAGCTCAAAAATGAATGGTTAAGTTATCAATGACGCTGCGCCTGACAATTTCT TTTATCGCCATACTTATCCTCGCCTGTACCGGCATTAGCTGGACGCTCTATAACGCGCTG AGCAAAGAATTAACGTATCGGGATGATATGACGCTAATAAATCGGGCGGCGCAAATGCAG CAACTGTTACTGGATGGCGCCAGGCCGGAAAATCTGCCGCTCTATTTCAATCGGATGGTG GATACGAAGCAGGATATCTTATTGATCCACTCAGCAACAGGCCATAATGTTGCGATTAAT CATAGCGGCATCCCCGACCAACGCTTTAACGAGATTCCGCTGGCTAAAAACATCACCCGC GAAACCTTATTTCGCCAGGCGGTACAAGGCACGGAGCTGACCGCGGTACGAGTAAACGCC AGAAGCGGCGATAACCCGCTGACCCTTACTATTGCCAGGCTGGCGACGGAAAGGCGGCAA ATGCTGGCGCAATATCGCCGCAACAGTTTGCTGATTAGCCTTATCGCGATCCTCGTCTGT TCGGCGCTCAGTCCATTAGTCATCAGAAACGGGCTGCGGGCCATTACGTCGCTCAGCCGA CTCACCGCGGCGACAGATAGCGGCACACTTCGCCAGCCGCTGGCGGAACAGGCGTTACCC GTCGAGCTCAGGCCGCTTGGGCAAGCGCTAAATACCATGCGCCAGAAGCTTTCCGACGAT TTTGAACGCCTGAACCAATTTGCCGACGATCTGGCGCATGAGCTGCGCACGCCGGTTAAT ATTTTACTGGGGAAGAATCAGGTTATGCTGAGTCAGGAACGCAGCGCCGAAGAGTATCAA CAAGCCCTTGTCGATAATATTGAAGAGCTGGAGGGACTGTCGCGACTGACAGAAAATATT CTCTTTCTGGCACGCGCGGAGCACCAGAATATAGCGGTAAAAAAACAGCCTGTTTCGCTC AATGCGCTGGTCGAAAATATGCTGGATTATCTTAGCCCCCTTGCCGAAGAGAAGCACATC TGTTTTATAAATCAATGTCAGGGAACGGTATGGGCTGACGAAATATTATTACAAAGAGTG CTCTCAAACCTGCTGACGAATGCCATCCGTTATTCTGATGAAAACGCCGTGATACGTATT GAAAGCGCTTATGATGATAACGTTGCAGAAATTCGGGTCGCTAATCCGGGCAGCCCCACC GCCGATGCGGATAAGCTTTTCCGGCGTTTTTGGCGAGGAGATAATGCCCGCTACACTGCC GGTTTCGGCCTGGGGTTATCGTTAGTTAACGCGATTGCCCTATTGCACGGTGGCTCGGCA TCTTACCGCTATGCCGATGAACATAATATCTTTTCGGTTCGTCTGCCTGATAGCGGTGAT AGCTAAGTGATATGTCTGAAAGTCCAGGGCGGCATTGGTGAAATTTTTACGGTGACGCAG CAGGCGGATAAATTCTTGCCGGCTACGCAGTTCCACTGGAGCTGGACGGAAAGCACAGTA CCTGTATTGATGATTGGGTTTCTGTTTGCCAATATTCAGCAATTTACTGCCAGTCAGGAT GTGGTCCAACGCTATATGGTGACTGACTCCATAGAGGAAACGAAGAAAACATTACTTACA AATGCCAAACTGGTTGCGGTGATCCCTGTTTTCTTTTTTGCTATCGGCTCGGCATTATTT GTCTACTATCAGCAACAGCCACAATTATTACCGGCGGGATTCAACACTGGCGGCATTTTG CCCTTATTCGTGGTCACGGAAATGCCAGTCGGCATTGCAGGGTTGATAATCTCCGCTATT TTCGCTGCCGCGCAGTCGAGCATCTCCAGCAGCTTAAACAGCATTTCCAGTTGTTTTAAT TCCGATATCTATCAGCGGTTGAGTCATAAAAAAGGAACGCCAGAAAACCGTATGAAAATA GCTAAGTTAGTTATTCTGGTCGCGGGCCTGATAAGTAGCGCGGCCTCGGTATGGCTGGTC ATGGCCGATGAATCAGAGATCTGGGATGCATTTAATAGTCTGATAGGTCTGATGGGAGGG CCAATGACCGGTCTGTTGATGCTGGGCATTTTCTTTAAACGAGCAAATGCCGGGAGTGCG GTTTTAGGAATTATTATGAGCGTCATTACCGTGCTGGGCACACGCTATGCCACTGACCTT AACTTCTTCTTTTATGGGGTCATTGGCTCGCTAAGCGTGGTGATCAGCGGCGTTATTTTC GCCCCGTTATTTGCCCCGGCACCGCCATTGACGCTGGATGAAAAACCTGAACCAAAGGTG ACATTATGAATGAAAATCAACAGATATCTTCTGGGTATGGTTTCGTTTATAGCATTTTCA TCATATCTACAAGCGGCAACCCTTGATTATCGGCATGAATATGCTGATAGAACCAGAATT AATAAAGACCGTATTGCTATAATTGAAAAGCTTCCTAACGGCATTGGTTTTTATGTCGAT GCCAGCGTTAAATCGGGAGGAGTAGATGGTGAGCAGGATAAGCATTTAAGCGATCTCGTC GCAAACGCTATAGAACTGGGCGTAAGTTATAATTATAAAGTTACGGACCATTTTGTTTTG CAGCCTGGATTTATATTTGAAAGCGGTCCAGACACTTCAATTTATAAGCCTTATTTAAGG GCGCAATATAATTTTGATTCTGGTGTTTATATGGCTGGTCGTTACCGTTATGACTATGCA AGGAAGACAGCTAACTATAATGATGATGAGAAAACGAATAGATTTGATACTTATATAGGT TATGTTTTTGATGAGTTGAAATTGGAATATAAATTTACCTGGATGGATAGCGATCAAATT AAATTTGATAACAAAAAAACAAACTATGAACATAATGTGGCTTTAGCCTGGAAACTGAAT AAGTCATTTACACCATACGTTGAGGTCGGAAATGTAGCGGTGAGAAATAATACCGATGAG AGACAGACCCGTTATCGCGTTGGATTACAATACCACTTTTGAATGACGAAATACGGTGTT ATAGGTACAGGTTATTTTGGCGCTGAACTGGCGCGATTTATGTCTAAGGTTGAAGGGGCG AAAATCACTGCGATTTACGATCCGGTAAATGCGGCTCCGATAGCGAAAGAGCTGAACTGT GTCGCCACTTCAACGATGGAGGCGCTTTGTACCCATCCTGATGTGGATTGCGTAATTATT GCTTCACCAAATTACTTACATAAAGCGCCGGTCATTGCGGCGGCTAAAGCGGGTAAACAC GTGTTTTGTGAAAAACCTATCGCCTTAAATTACCAGGATTGTAAGGATATGGTTGATGCC TGCAAAGAAGCTGGTGTTACCTTTATGGCGGGTCACGTTATGAACTTTTTTCACGGGGTT CGCCACGCTAAAGCGCTCATCAAAGCCGGTGAAATCGGTGAAGTTACACAAGTTCACACT AAACGTAATGGTTTTGAAGACGTGCAGGATGAGATCTCATGGAAGAAGATTCGCGCAAAG TCAGGTGGGCATCTGTACCATCACATTCACGAGCTAGATTGTACACTGTTCATCATGGAT GAAACCCCATCCCTGGTTTCAATGGCGGCGGGGAATGTTGCGCACAAAGGTGAAAAATTT GGTGATGAAGATGATGTTGTCCTAATCACCCTTGAGTTTGAAAGCGGTCGTTTCGCGACA CTTCAGTGGGGATCATCGTTCCACTACCCTGAGCACTATGTATTAATTGAGGGCACGACA GGTGCAATTCTCATTGATATGCAAAACACGGCTGGTTATCTAATAAAAGCGGGCAAAAAA ACACACTTTCTTGTGCATGAAAGCCAGGCGGAGGATGATGATCGTCGCAACGGTAACATA TCCAGCGAGATGGATGGCGCAATCGCTTATGGTAAACCCGGTAAACGTACGCCGATGTGG CTCTCATCAATTATGAAACTGGAGATGCAGTACTTGCATGATGTGATAAACGGTCTGGAG CCAGGCGAGGAGTTTGCTAAATTGCTAACGGGAGAAGCGGCGACAAATGCCATTGCTACC GCTGATGCTGCGACGCTTTCTTCAAACGAGGGGCGCAAAGTTAAACTCACTGAAATTCTT GGCTAAATGACATCACGTCTTCAGGTCATACAGGGTGATATCACTCAACTTAGCGTCGAT GCGATTGTGAATGCCGCTAACGCATCATTAATGGGCGGCGGTGGCGTAGACGGCGCAATT CATCGCGCGGCGGGGCCGGCATTGCTGGACGCCTGTAAACTCATCCGTCAGCAACAGGGC GAATGTCAGACGGGACATGCGGTTATCACGCCTGCTGGCAAGCTTTCGGCAAAGGCGGTT ATTCACACAGTGGGGCCCGTCTGGCGAGGCGGCGAACACCAGGAAGCTGAGCTACTCGAA GAGGCATACCGGAATTGTTTGCTGCTTGCCGAGGCGAATCACTTTCGTTCCATCGCTTTT CCGGCAATCAGTACCGGCGTTTATGGCTATCCACGCGCCCAGGCCGCTGAAGTCGCCGTC AGGACGGTTTCAGATTTTATTACCCGTTACGCTCTGCCTGAACAGGTATACTTTGTCTGT TATGATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAGGCGACGACCCT GCCTGA Roary-3.8.0/t/data/expected_nnn_at_end.fa000066400000000000000000000000561304207556500202760ustar00rootroot00000000000000>1 AAA >2 AAACCC >3 AAACCCGGG >4 AAACCCGGGTTT Roary-3.8.0/t/data/expected_nuc_multifasta.fa.aln000066400000000000000000000120421304207556500217600ustar00rootroot00000000000000>1 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTGCATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGAAAATATTTGGCGTCAG------NNNAATATTTCTTCATTAATC ACATCT >2 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCT---GCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGGTGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGAAAATATTTGG---CAGTCAGTAAAAGGTATTTCTTCATTAATC ACATCT >3 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAGGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGAAAATATTTGG---CAGTCAGTAAAAGGTATTTCTTCATTAATC ACATCT Roary-3.8.0/t/data/expected_nuc_multifasta.faa000066400000000000000000000042031304207556500213500ustar00rootroot00000000000000>AAAA#74_01075 CQYHLF*PYWRALPPLLARFLAFLAKNRLTACWLFRWASPQGSCCSSR*WRCCPPR*IPR GCRLYWATGCLLSACWATSGWIVCFLTLIRRIWCKKGSSRFPAR*NALRFY*RSALACTT FRKESPPLSLPAAILNWVSASHWRWRCTIFLKGWRLPARFMPRRAQNVPRFFGPVSPAWR KFLAACWRG*FWAAWFHRSLWRLSWQQSPALWWRSPSMN*CRWQKRSILTITPAMVCFAV CPSWGSVSSFCRR*VSV >BBBB#75_01314 MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIMLLISLMDAARRVRYRG DVACTGLRDVYYRPVGLLRAGSSASSRSSAGSGAKKAAAASRLDKTHCDFIDARH*PAQL SGRNRHLCHCQQQS*TGFRHRTGGGVAQYS*RAGGCRPGLCRDGLKTYRDFLGRYLRHGG NSWRRAGVADFGQPGFTDRYGGYHGSSRRHYGGALRR*TDAVGKRDRS*Q*PQLWCALRY VHHGAQSRHFADDRYRL >CCCC#76_00877 MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIMLLISLMEMLPAALDTE GMSPVLGYGSLLSACWATSGWIVCFLTLIRRIWCKKGSSRFPAR*NALRFY*RSALACTT FRKESPLSLPAAILNWVSASHWRWRCTIFLKGWRLPARFMPRRAQNVPRFFGPVSPAWRK FLAACWRG*FWAAWFHRSLWRLSWQQSPALWWRSPSMN*CRWQKRSILTITPAMVCFAVC PSWGSVSSFCRR*VSV >DDDD#77_01105 MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIMLLISLMEMLPAALDTE GMSPVLGYGMFIIGLLGYFGLDRLLPHAHPQDLVQKRQQPLPGSIKRTAILLTLGISLHN FPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAIFWAGISGMA EILGGVLAWLILGSLVSPIVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCG MSIMGLSLVILQTIGIG* >EEEE MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIMLLISLMEMLPAALDTE GMSPVLGYGMFIIGLLGYFGLDRLLPHAHPQDLVQKRQQPLPGSIKRTAILLTLGISLHN FPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAIFWAGISGMA EILGVLAWLILGSLVSPIVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGM SIMGLSLVILQTIGIG* >FFFF MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIMLLISLMEMLPAALDTE GMSPVLGYGMFIIGLLGYFGLDRLLPHAHPQDLVQKRQQPLPGSIKRTAILLTLGISLHN FPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAIFWAGISGMA EILGGVLAWLILGSLAPIVMAAIMAAVAGIMVALSVDELMPLAKEIDPNNNPSYGVLCGM SIMGLSLVILQTIGIG* >GGGG MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIMLLISLMEMLPAALDTE GMSPVLGYGMFIIGLLGYFGLDRLLPHAHPQDLVQKRQQPLPGSIKRTAILLTLGISLHN FPEGIATFVTASSNLELGFGIALGWRCTIFLKGWRLPARFMPRRAQNVPRFFGPVSPAWR KFLAACWRG*FWAAWFHRSLWRLSWQQSPALWWRSPMN*CRWQKRSILTITPAMVCFAVC PSWGSVSSFCRR*VSV >HHHH MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIMLLISLMEMLPAALDTE GMSPVLGYGMFIIGLLGYFGLDRLLPHASAGSGAKKAAAASRLDKTHCDFIDARH*PAQL SGRNRHLCHCQQQS*TGFRHRTGGGVAQYS*RAGGCRPGLCRDGLKTYRDFLGRYLRHGG NSWRRAGVADFGQPGFTDRYGGYHGSSRRHYGGALRR*TDAVGKRDRS*Q*PQLWCALRY VHHGAQSRHFADDRYRL Roary-3.8.0/t/data/expected_nuc_multifasta_mafft.fa.aln000066400000000000000000000120311304207556500231330ustar00rootroot00000000000000>1 atgcaaatacagagcttctatcactcagcttcactaaaaacccaggaggcttttaaaagc ctacaaaaaaccttatacaacggaatgcagattctctcaggccagggcaaagcgccggct aaagcgcccgacgctcgcccggaaattattgtcctgcgagaacctggcgcgacatggggg aattatctacagcatcagaagacgtctaaccactcgctgcataacctctataacttacag cgcgatcttcttaccgtcgcggcaaccgttctgggtaaacaagacccggttctaacgtca atggcaaaccaaatggagttagccaaagttaaagcggaccggccagcaacaaaacaagaa gaagctgcggcaaaagcattgaagaaaaatcttatcgaacttattgcagcacgcactcag cagcaaaatggcttacctgcaaaagaagctcatcgctttgcggcagtagcgtttagagat gctcaggtcaagcagctcaataaccagccctggcaaaccataaaaaatacactcacgcat aacgggcatcactataccaacacgcagctccctgccgcagagatgaaaatcggcgcaaaa gatatctttcccagtgcttatgagggaaagggcgtatgcagttgggataccaagaatatt catcacgccaataatttgtggatgtccacggtgagtgtgcatgaggacggtaaagataaa acgcttttttgcgggatacgtcatggtgtgctttccccctatcatgaaaaagatccgctt ctgcgtcaggccggcgctgaaaacaaagccaaagaagtattagctgcggcactttttagt aaacctgagttgcttaacagagccttagagggcgaagcggtaagcctgaaactggtatcc gtcgggttactcaccgcgtcgaatattttcggcaaagagggaactatggtcgaggatcaa atgcgcgcatggcaatcgttgacccagccgggaaaaatgattcatttaaaaatccgcaat aaagatggcgatctacagacggtaaaaataaaaccggacgtcgccgcatttaatgtgggt gttaatgagctggcgctcaagctcggctttggccttaaagcatcagatagctataatgcc gaagcgctgcatcagttattaggcaatgatttacgccctgaagccagaccaggtggctgg gttggcgaatggctggcgcaatacccggataattatgaggtcgtcaatacattagcgcgc cagattaaggatatctggaaaaataaccaacatcataaagatggcggcgaaccctataaa ctcgcacaacgccttgccatgttagcccatgaaattgacgcggtgcccgcctggaattgt aaaagcggcaaagatcgtacagggatgatggattcagaaatcaagcgagagctcatttct ttccatcagacccatatgttaagtgcgcctggtagtcttccggatagcggtggacagaaa attttccaaaaagtattactgaatagcggtaacctggagattcagaaacaaaatacgggc ggggcgggaaacaaagtaatgaaaaatttatcgccagaggtgctcaatctttcctatcaa aaacgagttggggatgaaaatatttggc-gtcagtaaaa--tatttcttcattaatcaca tct >2 atgcaaatacagagcttctatcactcagcttcactaaaaacccaggaggcttttaaaagc ctacaaaaaaccttatacaacggaatgcagattctctcaggccagggcaaagcgccggct aaagcgcccgacgctcgcccggaaattattgtcctgcgagaacctggcgcgacatggggg aattatctacagcatcagaagacgtctaaccactcgctgcataacctctataacttacag cgcgatcttcttaccgtcgcggcaaccgttctgggtaaacaagacccggttctaacgtca atggcaaaccaaatggagttagccaaagttaaagcggaccggccagcaacaaaacaagaa gaagctgcggcaaaagcattgaagaaaaatcttatcgaacttattgcagcacgcactcag cagcaaaatggcttacctgcaaaagaagctcatcgctttgcggcagtagcgtttagagat gctcaggtcaagcagctcaataaccagccctggcaaaccataaaaaatacactcacgcat aacgggcatcactataccaacacgcagctccct---gcagagatgaaaatcggcgcaaaa gatatctttcccagtgcttatgagggaaagggcgtatgcagttgggataccaagaatatt catcacgccaataatttgtgggtgtccacggtgagtgtgcatgaggacggtaaagataaa acgcttttttgcgggatacgtcatggtgtgctttccccctatcatgaaaaagatccgctt ctgcgtcaggccggcgctgaaaacaaagccaaagaagtattagctgcggcactttttagt aaacctgagttgcttaacagagccttagagggcgaagcggtaagcctgaaactggtatcc gtcgggttactcaccgcgtcgaatattttcggcaaagagggaactatggtcgaggatcaa atgcgcgcatggcaatcgttgacccagccgggaaaaatgattcatttaaaaatccgcaat aaagatggcgatctacagacggtaaaaataaaaccggacgtcgccgcatttaatgtgggt gttaatgagctggcgctcaagctcggctttggccttaaagcatcagatagctataatgcc gaagcgctacatcagttattaggcaatgatttacgccctgaagccagaccaggtggctgg gttggcgaatggctggcgcaatacccggataattatgaggtcgtcaatacattagcgcgc cagattaaggatatctggaaaaataaccaacatcataaagatggcggcgaaccctataaa ctcgcacaacgccttgccatgttagcccatgaaattgacgcggtgcccgcctggaattgt aaaagcggcaaagatcgtacagggatgatggattcagaaatcaagcgagagctcatttct ttccatcagacccatatgttaagtgcgcctggtagtcttccggatagcggtggacagaaa attttccaaaaagtattactgaatagcggtaacctggagattcagaaacaaaatacgggc ggggcgggaaacaaagtaatgaaaaatttatcgccagaggtgctcaatctttcctatcaa aaacgagttggggatgaaaatatttggcagtcagtaaaaggtatttcttcattaatcaca tct >3 atgcaaatacagagcttctatcactcagcttcactaaaaacccaggaggcttttaaaagc ctacaaaaaaccttatacaacggaatgcagattctctcaggccagggcaaagcgccggct aaagcgcccgacgctcgcccggaaattattgtcctgcgagaacctggcgcgacatggggg aattatctacagcatcagaagacgtctaaccactcgctgcataacctctataacttacag cgcgatcttcttaccgtcgcggcaaccgttctgggtaaacaagacccggttctaacgtca atggcaaaccaaatggagttagccaaggttaaagcggaccggccagcaacaaaacaagaa gaagctgcggcaaaagcattgaagaaaaatcttatcgaacttattgcagcacgcactcag cagcaaaatggcttacctgcaaaagaagctcatcgctttgcggcagtagcgtttagagat gctcaggtcaagcagctcaataaccagccctggcaaaccataaaaaatacactcacgcat aacgggcatcactataccaacacgcagctccctgccgcagagatgaaaatcggcgcaaaa gatatctttcccagtgcttatgagggaaagggcgtatgcagttgggataccaagaatatt catcacgccaataatttgtggatgtccacggtgagtgtgcatgaggacggtaaagataaa acgcttttttgcgggatacgtcatggtgtgctttccccctatcatgaaaaagatccgctt ctgcgtcaggccggcgctgaaaacaaagccaaagaagtattagctgcggcactttttagt aaacctgagttgcttaacagagccttagagggcgaagcggtaagcctgaaactggtatcc gtcgggttactcaccgcgtcgaatattttcggcaaagagggaactatggtcgaggatcaa atgcgcgcatggcaatcgttgacccagccgggaaaaatgattcatttaaaaatccgcaat aaagatggcgatctacagacggtaaaaataaaaccggacgtcgccgcatttaatgtgggt gttaatgagctggcgctcaagctcggctttggccttaaagcatcagatagctataatgcc gaagcgctacatcagttattaggcaatgatttacgccctgaagccagaccaggtggctgg gttggcgaatggctggcgcaatacccggataattatgaggtcgtcaatacattagcgcgc cagattaaggatatctggaaaaataaccaacatcataaagatggcggcgaaccctataaa ctcgcacaacgccttgccatgttagcccatgaaattgacgcggtgcccgcctggaattgt aaaagcggcaaagatcgtacagggatgatggattcagaaatcaagcgagagctcatttct ttccatcagacccatatgttaagtgcgcctggtagtcttccggatagcggtggacagaaa attttccaaaaagtattactgaatagcggtaacctggagattcagaaacaaaatacgggc ggggcgggaaacaaagtaatgaaaaatttatcgccagaggtgctcaatctttcctatcaa aaacgagttggggatgaaaatatttggcagtcagtaaaaggtatttcttcattaatcaca tct Roary-3.8.0/t/data/expected_number_of_conserved_genes.tab000066400000000000000000000000741304207556500235600ustar00rootroot000000000000004 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 Roary-3.8.0/t/data/expected_number_of_conserved_genes_0.6.tab000066400000000000000000000000741304207556500241430ustar00rootroot000000000000004 2 4 4 2 4 4 2 4 4 2 4 4 2 4 4 2 4 4 2 4 4 2 4 4 2 4 4 2 4 Roary-3.8.0/t/data/expected_number_of_genes_in_pan_genome.tab000066400000000000000000000000741304207556500243660ustar00rootroot000000000000004 6 7 4 6 7 4 6 7 4 6 7 4 6 7 4 6 7 4 6 7 4 6 7 4 6 7 4 6 7 Roary-3.8.0/t/data/expected_number_of_new_genes.tab000066400000000000000000000000741304207556500223610ustar00rootroot000000000000004 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 4 2 1 Roary-3.8.0/t/data/expected_number_of_unique_genes.tab000066400000000000000000000000741304207556500230760ustar00rootroot000000000000004 4 3 4 4 3 4 4 3 4 4 3 4 4 3 4 4 3 4 4 3 4 4 3 4 4 3 4 4 3 Roary-3.8.0/t/data/expected_one_gene_presence_and_absence.Rtab000066400000000000000000000000671304207556500244440ustar00rootroot00000000000000Gene Gene query_1.fa query_2.fa query_3.fa hly 1 0 0 Roary-3.8.0/t/data/expected_out_of_order_fasta.fa.sorted.fa000066400000000000000000000001061304207556500237170ustar00rootroot00000000000000>1111 AAAAAAA >2222 TTTTTTT >3333 GGGGGGG >4444 CCCCCCC >5555 AAAAAAA Roary-3.8.0/t/data/expected_output_core_missing_genes.aln000066400000000000000000000002331304207556500236360ustar00rootroot00000000000000>111 AAAANNNNNNNGGNNNNNXXXXXXX >222 AAAACCCCCCCGGTTTTTXXXXXXX >333 AAAACCCCCCCGGNNNNNXXXXXXX >444 AAAACCCCCCCGGTTTTTXXXXXXX >555 AAAACCCCCCCNNNNNNNXXXXXXX Roary-3.8.0/t/data/expected_output_filtered.fa000066400000000000000000000006021304207556500214060ustar00rootroot00000000000000>2363_5_03666 AAAAAAAAAAAAAGGGGGGGGGGGGGG >4075_2#3_03437 AAAAAAAAAAAAAGGGGGGGGGGGGGG >4075_1#8_03461 AAAAAAAAAAAAAGGGGGGGGGGGGGG >2212_3_02841 AAAAAAAAAAAAAGGGGGGGGGGGGGG >2363_5_00947 AAAAAAAAAAAAAGGGGGGGGGGGGGG >2363_7_00085 AAAAAAAAAAAAAGGGGGGGGGGGGGG >2460_2_00826 AAAAAAAAAAAAAGGGGGGGGGGGGGG >4075_1#6_04091 AAAAAAAAAAAAAGGGGGGGGGGGGGG >4075_1#3_04238 AAAAAAAAAAAAAGGGGGGGGGGGGGG Roary-3.8.0/t/data/expected_output_groups000066400000000000000000000003041304207556500205410ustar00rootroot000000000000006259_6#6_02209 6259_7#20_00601 6593_5#7_01700 6630_2#15_02136 6630_4#12_02032 6631_2#21_02147 6631_4#23_02060 6631_7#21_02171 6664_1#10_02278 1234#12_01975 1234#1_01317 1234#20_01662 1234#3_01167 Roary-3.8.0/t/data/expected_output_groups_cdhit000066400000000000000000000001161304207556500217150ustar00rootroot000000000000003634_6_04078 2212_1_01414 2363_1_00811 2541_2_00696 2541_8_00920 3634_7_00911 Roary-3.8.0/t/data/expected_output_groups_group_2.fa000066400000000000000000000016451304207556500225740ustar00rootroot00000000000000>1234#10_00003 VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >1234#10_00018 MDFSFNLVDNNGTVMRSTFSPIRFFTFSFLWILIDCSSVQKIENFNSVLQEPTFKSLKEE EAILGGSSDSDYKIRKTGNTIPVFVLSPIQTPEGMDSKLAAFLSDEVRLIWAKVKGKQVR IQEMSWKNPSQLSQELKRLNVDAVIKTDIREVSGKWVVNQKITDPVKEIVYGSVDGSFQS PKIEDELQANQAYYLKHGSGVLALDAKSSLVPIWEKSLSSGEIDSILKKSIQGYLSFSAS SADTEVLFQGEKIGIASFRNYPLPEGLQQIQITRPGQKDISKSLQIRSGQTISIYQEWKE DRTLGGVRILSFPEALQVALDGLKMGETPFYRSNLTPGAMQLELVRETENGPLVYYEGQL IVDADKITEIALPYKTDNLISEPEFWKLSGEKGFQAFSGKTLDFQNVSSLPPGWYGVFSA PFVPENMELEGIIPITAESDSGIVAISFHTSKKTISLEYEKERLSVYSFPSNGNNVGTYK FKKEDKEDGRPFRIITDVKEGTIRLYLGYSKVLEDRLDVSGVWRISILTRGENFSKRSPL RNLKIEYKGYK* >1234#10_00005 LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* Roary-3.8.0/t/data/expected_output_groups_group_2_multi.fa000066400000000000000000000020211304207556500237730ustar00rootroot00000000000000>1234#10_00003 hypothetical protein VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >1234#10_00018 putative lipoprotein MDFSFNLVDNNGTVMRSTFSPIRFFTFSFLWILIDCSSVQKIENFNSVLQEPTFKSLKEE EAILGGSSDSDYKIRKTGNTIPVFVLSPIQTPEGMDSKLAAFLSDEVRLIWAKVKGKQVR IQEMSWKNPSQLSQELKRLNVDAVIKTDIREVSGKWVVNQKITDPVKEIVYGSVDGSFQS PKIEDELQANQAYYLKHGSGVLALDAKSSLVPIWEKSLSSGEIDSILKKSIQGYLSFSAS SADTEVLFQGEKIGIASFRNYPLPEGLQQIQITRPGQKDISKSLQIRSGQTISIYQEWKE DRTLGGVRILSFPEALQVALDGLKMGETPFYRSNLTPGAMQLELVRETENGPLVYYEGQL IVDADKITEIALPYKTDNLISEPEFWKLSGEKGFQAFSGKTLDFQNVSSLPPGWYGVFSA PFVPENMELEGIIPITAESDSGIVAISFHTSKKTISLEYEKERLSVYSFPSNGNNVGTYK FKKEDKEDGRPFRIITDVKEGTIRLYLGYSKVLEDRLDVSGVWRISILTRGENFSKRSPL RNLKIEYKGYK* >1234#10_00005 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* Roary-3.8.0/t/data/expected_output_groups_group_5.fa000066400000000000000000000007111304207556500225700ustar00rootroot00000000000000>1234#10_00016 MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL DEIMVEPEKPKKK* Roary-3.8.0/t/data/expected_output_groups_group_5_multi.fa000066400000000000000000000007361304207556500240110ustar00rootroot00000000000000>1234#10_00016 hypothetical protein MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL DEIMVEPEKPKKK* Roary-3.8.0/t/data/expected_output_merged.aln000066400000000000000000000002401304207556500212350ustar00rootroot00000000000000>1111_1#1 AAAAA-CCCC----TTTTTTTTTTTTTTT >2222_2#2 CCCCC-AAAA----AAAAAAAAAAAAAAA >3333_3#3 TTTTT-GGGG----CCCCCCCCCCCCCCC >4444_4#4 GGGGG-TTTT----GGGGGGGGGGGGGGG Roary-3.8.0/t/data/expected_output_merged_sparse.aln000066400000000000000000000002241304207556500226140ustar00rootroot00000000000000>1111_1#1 CCCC-----AAAA-AAAAA--AAAA- >2222_2#2 AAAA-----TTTT-CCCCC--TTTT- >3333_3#3 GGGG----NNNNNNTTTTT-NNNNNN >4444_4#4 TTTT-----CCCC-GGGGG--CCCC- Roary-3.8.0/t/data/expected_pan_genome.fa000066400000000000000000000030011304207556500202740ustar00rootroot00000000000000>1234#10_00016 MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL DEIMVEPEKPKKK* >1234#10_00017 MKRYLSIVILCTFAMLLLVCSTNKSSGSDQVKTESNATSARIVWLLGDVKILSDSGEKKA ELGASLSSTDRVVTGPNGGAEIMVADSGIIKMSKNSDIEISSLMNPNGSDTNVQVNYGKI VTMVKKGQKTTEFTVSTPTALAGVRGTSFLTSVESPEGSKINCAKANCTVRFAVIEGTIA VSKKGESSEVILSKNRELRIEKNQKLTDKLIRSLQNDSLSEMKELIVLHKNETFEYGKLV EELKSSSEELKILSQSGSVEEVKAAFQKREADRNNADEITKTAKAVNETKYVQQDVQKEK LKLNPKETF* >1234#10_00001 MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP SPLFTEYMLDAVNLYLKEYAPLVH* >1234#10_00003 VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >1234#10_00005 LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* >1234#10_00006 MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV EKNNIFGTQFHPEKSHTHGLKLLENFIRFI* Roary-3.8.0/t/data/expected_pan_genome_one_gene_per_fasta.fa000066400000000000000000000033101304207556500241620ustar00rootroot00000000000000>1234#10_00001 nudix hydrolase MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP SPLFTEYMLDAVNLYLKEYAPLVH* >1234#10_00003 hypothetical protein VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >1234#10_00005 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* >1234#10_00006 imidazole glycerol phosphate synthase subunit HisH MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV EKNNIFGTQFHPEKSHTHGLKLLENFIRFI* >1234#10_00016 hypothetical protein MKVTHSCLEFDSIEGLIDFAREFETGSMIRFLSPIEDNSGNVLVKEEVQVKESTLARLKD IKGQYTPKFEVKLNKELLEQIQNILAIKIVNQLKVTDMKFLKFMYENTNYNFKGIIRNSL LSKKTTLTLLKVYNQNLNFFKYISELGLLSLGIVMIPDTMRFRLLRRYAFTAGILMDVPR IGVDKFTKLPSDDNEKVRVAHKCSDILQKLDLIEFTYGSISNHMPLGMIEDSTSSDKAAP GENIDETFLDDIISNDGESDSKVDGSREDAIPEKSYDIFQALLTDALKLARYIANVSHNA VDKDYVMEELVYYIAYNTSKKYFDELLANPLVATFKEFEVNVKRLRKIAEVEMKCVYPPS AWAYPKPKSSQVLCKNKVWDCPNIVMGWDIHVITAQEAFGWVGTSLPVDNYPKCRLEEEL DEIMVEPEKPKKK* >1234#10_00017 LipL45-like lipoprotein MKRYLSIVILCTFAMLLLVCSTNKSSGSDQVKTESNATSARIVWLLGDVKILSDSGEKKA ELGASLSSTDRVVTGPNGGAEIMVADSGIIKMSKNSDIEISSLMNPNGSDTNVQVNYGKI VTMVKKGQKTTEFTVSTPTALAGVRGTSFLTSVESPEGSKINCAKANCTVRFAVIEGTIA VSKKGESSEVILSKNRELRIEKNQKLTDKLIRSLQNDSLSEMKELIVLHKNETFEYGKLV EELKSSSEELKILSQSGSVEEVKAAFQKREADRNNADEITKTAKAVNETKYVQQDVQKEK LKLNPKETF* Roary-3.8.0/t/data/expected_pan_genome_reference.fa000066400000000000000000002413161304207556500223270ustar00rootroot00000000000000>11111_1#11_04055 ATGCTTCCGGTCACCTACAGATTAATACCTCAAAGCGGAGTATCCACATATGGATTAAAT ACCGCAGATACACCTGTTTTCCCCGATATTCCCGAACATGCACCAAACCCCTCACGGCTA CGCCTTGCTCATGACAGCCTTGCCATAAACAGTGAATTCCGTCTGGAGCCAGAGTGTGTG GTGGAGTACCTTATCTCAGGCGCGGGTGGAATAGACCCTGATACAGAAATTGATGACGAC ACTTATGACGAATGCTACGATGAACTATCCTCCGTACTTCAAAATGCGTATACCCAAAGC GAAACATTCCGCAGACTGATGAATTACGCATATGAAAAAGAACTACATGATGTGGAGCAG CGCTGGCTACCGGGGGCAGGCGAAGCCTTTGAAACTACCGTGGCTCAGGAACACTTCAAA CTTTCAGAAGGCAGGAAAGTTATTTGTCTCAATCTGGACGATTCTGATGATTCATATACC GAACATTATGAAAGTAACGAAGGAAGACAACTTTTTGACACAAAACGTTCATTTACTCAT GAAGTTGTACATGCACTGACCCATCTTCAGGATAAAGAAGAAAATCATCCAAGAGGCCCT GTTGTCGAATATACCAACATTATTCTGAAAGAGATGGGGCATCCTTCACCTCCCAGAATG GTCTACATCTTCAATAAATAG >11111_1#11_04056 ATGCCAATAACTAACGCGTCCCCAGAAAATATATTAAGATATTTGCATGCGGCCGGTACC GGTACGAAAGAAGCAATGAAAAGTGCAACTTCACCACGCGGTATACTGGAATGGTTTGTC AATTTTTTTACCTGTGGTGGAGTAAGAAGAAGCAATGAAAGATGCTTTTGGGAGGTAATT GGAAAACTGACCACATCATTATTATATGTAAATAAAGATGCTTTCTTCGATGGTAATAAA ATATTTCTGGAGGATGTCAACGGGTGTACTATATGTCTGTCATGTGGAGCAGCATCCGAA AATACGGATCCCATGGTCACTATTGAAGTGAACAAAAATGGAAAAACTGTAACGGATAAA GTTGATAGTGAGAGATTTTGGAATGTATGTCGAATGTTAAAACTGATGAGTAAACATAAT ATACAACAGCCTGATTCACTTATAACCGAGGATGGTTTTCTGAACCTGCGCGGAGTAAAC CTAGCTCATAAAGATTTCCAGGGAGAAGATTTGTCAGACATAGATGCTTCTAATGCAGAT TTCCGTGAAACAAATCTATCTAATGTAAATTTAGTCGGTGCAAATTTGTGTTGTGCAAAT CTACACGCTGTAAATCTAATGGGTTCAAACATGACTAAAGCAAACCTGACTCACGCAGAC CTGACTTGCGCTAACATGTCCGGTGTAAACTTAACCGCTGCAATTCTATTCGGCTCAGAC TTAACTGACACCAAACTAAATGGTGCAAAATTAGATAAGATAGCTCTAACTTTAGCGAAA GCATTAACAGGAGCCGATCTGACAGGTAGTCAACATACCCCTACTCCACTCCCGGATTAC AATGATAAAACGCTTTTCCCCCATCCAATATTTTAG >11111_1#11_04058 ATGGAAAGTCTATTAAATCGTTTATATGACGCGTTAGGCCTGGATGCGCCAGAAGATGAG CCACTGCTTATCATTGATGATGGGATACAGGTTTATTTTAATGAATCCGATCATACACTG GAAATGTGCTGTCCCTTTATGCCACTGCCTGACGACACTCTGACTTTGCAGCATTTTTTA CGTCTTAACTACGCCAGCGCCGTCACTATCGGCGCTGATGCAGACAATACTGCTTTAGTG GCGCTTTATCGCTTGCCGCAAACCAGTACCGAAGAAGAGGCGCTCACTGGTTTTGAATTA TTCATTTCAAACGTGAAGCAATTGAAAGAGCATTATGCATAA >11111_1#11_04059 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACA TCTTGA >11111_1#11_04060 ATGAAAAAGTATCTTGCTTTCGCCGTTACGCTGCTGGGTATGGGTAAAGTCATCGCCTGT ACTACCCTTTTGGTAGGCAATCAGGCTTCGGCTGACGGCTCCTTTATTATCGCGCGCAAC GAGGATGGCTCGGCAAATAACGCCAAGCATAAGGTTATTCATCCCGTCGCGTTTCATCAA CAAGGCGAGTATAAAGCACATCGCAACAATTTTAGCTGGCCGCTTCCGGAGACAGCGATG CGCTATACGGCGATTCATGACTTTGATACTAACGATAACGCCATGGGTGAAGCCGGTTTC AATTCGGCGGGCGTCGGAATGAGCGCAACGGAAACCATTTACAACGGCAGAGCGGCGCTG GCTGCCGATCCTTACGTGACAAAAACGGGAATCACGGAAGACGCCATTGAGTCCGTGATC CTGCCAGTGGCGCAATCGGCGCGTCAGGGCGCCAAATTACTGGGAGATATTATTGAACAA AAAGGCGCGGGCGAAGGTTTCGGCGTCGCGTTTATTGATAGCAAAGAGATATGGTATCTG GAGACGGGAAGCGGACATCAATGGCTGGCAGTACGACTTCCGGCAGATAGCTATTTCGTT TCCGCCAATCAGGGACGTTTACGCCATTACGATCCGAATGATAACGCGAATTATATGGCG TCACCAACGTTAGTAAGCTTTGCGAAAAAGCAGGGATTATATGATCCGGCCCGCGGCGAA TTCGACTTTCATCAAGCCTATTCGCAGGATAACAAAAACGATACCACCTATAATTATCCG CGCGTCTGGACGCTACAACACCAGTTTAATCCGCATCTGGATACGGTCGTTAGCGAAGGG GAAACATTTTCTGTTTTTTTAACGCCAATAACGAAGATCAGCGTGGCGGCAGTAAAAAAC GCGTTACGCAATCACTATCAGGGAACGTCGCACGACCCTTATGCCAGTCATAATCCACAA GAACCATGGCGACCTATATCCGTTTTTCGTACCCAGGAGTCACATATTTTACAGGTCAGA CCGAAATTACCGCAGGCTATCGGCAACGTAGAATACATCGCCTATGGAATGCCATCTCTT AGCGTCTATCTCCCCTATTACCAGGGGATGCGTCATTATCAACCCGGAGATGATAAAGGA ACCGATCGGGCGAGCAACGACTCTACCTACTGGACATTCCGCACGCTGCAAACACTGGTT ATGCAAGACTACAATACGTTTGCGCCAGATGTGCAACATGCCTGGAAAACATTTGAACAG CAAACAGCTAAGCAACAGTATAAGATGGAGCAGAGCTATCTGAGATTATATGCGTCGCAT CCGAAAGAAGCACAACGCTTACTGCAAAATTTTGAAGATAAAACGATGCAAAATGCGCAG ACGCTCGCCCGTCGCCTGACCAATAATATTATTACGACAATGACTTACCGCACAGATATG AAATATCACTTTTCAAGTACGCAGCCATAA >11111_1#11_04061 ATGGTTAAGTTATCAATGACGCTGCGCCTGACAATTTCTTTTATCGCCATACTTATCCTC GCCTGTACCGGCATTAGCTGGACGCTCTATAACGCGCTGAGCAAAGAATTAACGTATCGG GATGATATGACGCTAATAAATCGGGCGGCGCAAATGCAGCAACTGTTACTGGATGGCGCC AGGCCGGAAAATCTGCCGCTCTATTTCAATCGGATGGTGGATACGAAGCAGGATATCTTA TTGATCCACTCAGCAACAGGCCATAATGTTGCGATTAATCATAGCGGCATCCCCGACCAA CGCTTTAACGAGATTCCGCTGGCTAAAAACATCACCCGCGAAACCTTATTTCGCCAGGCG GTACAAGGCACGGAGCTGACCGCGGTACGAGTAAACGCCAGAAGCGGCGATAACCCGCTG ACCCTTACTATTGCCAGGCTGGCGACGGAAAGGCGGCAAATGCTGGCGCAATATCGCCGC AACAGTTTGCTGATTAGCCTTATCGCGATCCTCGTCTGTTCGGCGCTCAGTCCATTAGTC ATCAGAAACGGGCTGCGGGCCATTACGTCGCTCAGCCGACTCACCGCGGCGACAGATAGC GGCACACTTCGCCAGCCGCTGGCGGAACAGGCGTTACCCGTCGAGCTCAGGCCGCTTGGG CAAGCGCTAAATACCATGCGCCAGAAGCTTTCCGACGATTTTGAACGCCTGAACCAATTT GCCGACGATCTGGCGCATGAGCTGCGCACGCCGGTTAATATTTTACTGGGGAAGAATCAG GTTATGCTGAGTCAGGAACGCAGCGCCGAAGAGTATCAACAAGCCCTTGTCGATAATATT GAAGAGCTGGAGGGACTGTCGCGACTGACAGAAAATATTCTCTTTCTGGCACGCGCGGAG CACCAGAATATAGCGGTAAAAAAACAGCCTGTTTCGCTCAATGCGCTGGTCGAAAATATG CTGGATTATCTTAGCCCCCTTGCCGAAGAGAAGCACATCTGTTTTATAAATCAATGTCAG GGAACGGTATGGGCTGACGAAATATTATTACAAAGAGTGCTCTCAAACCTGCTGACGAAT GCCATCCGTTATTCTGATGAAAACGCCGTGATACGTATTGAAAGCGCTTATGATGATAAC GTTGCAGAAATTCGGGTCGCTAATCCGGGCAGCCCCACCGCCGATGCGGATAAGCTTTTC CGGCGTTTTTGGCGAGGAGATAATGCCCGCTACACTGCCGGTTTCGGCCTGGGGTTATCG TTAGTTAACGCGATTGCCCTATTGCACGGTGGCTCGGCATCTTACCGCTATGCCGATGAA CATAATATCTTTTCGGTTCGTCTGCCTGATAGCGGTGATAGCTAA >11111_1#11_04062 ATGTCATCTTGTTGGAGATTTACGGATTCGCTAACAAGCCTATGGCATACTGCGTTGATG AAGATTTTATTGATTGAAGATAACCAGAAAACCATTGAGTGGGTACGTCAGGGACTCACG GAGGCAGGCTATGTGGTTGATTATGCCTGTGATGGACGAGACGGATTACACCTAGCCCTT CAGGAACATTATTCATTGATTATTCTTGATATTATGCTGCCGGGGCTTGATGGATGGCAG GTTTTACGCGCGTTGCGCACTGCATATCAGCCCCCTGTTATTTGCCTGACGGCGCGCGAC TCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGCGCTAATGATTACCTTGTTAAGCCT TTTTCCTTCGCCGAACTGCTGGCCCGGGTGAGAGCTCAACTCAGACAGCATGTCCCGGTC TTTACCCGACTGACGATCAATGGTCTGGACATGGATGCCACAAAGCAATCGGTGTTACGA AATGGCAAACCGATTTCCCTGACCCGCAAAGAATTCCTGCTCCTCTGGTTACTGGCGTCC CGGGCAGGGGAAATCGTGCCCCGAACCGCGATCGCCAGCGAAGTTTGGGGAATTAACTTT GATAGTGAAACCAACACCGTTGATGTCGCGATTCGTCGGCTGCGCGCCAAAGTAGACGAT CCATTTGAAAAGAAGCTCATTATGACCGTCCAGGGGATGGGTTATCGATTACAGGCGGAA ACGTCGCAGAATGGTTAA >11111_1#11_04063 ATGAAACGATATATACTGGCTACCGCGATAGCGTCTCTTGTTGCAGCCCCGGCAATGGCG CTGGCCGCTGGCAGCAATATTCTCAGCGTACATATTCTCGATCAGCAAACAGGCAAACCA GCGCCCGGCGTGGAGGTGGTACTGGAGCAGAAAAAGGATAACGGATGGACGCAATTAAAC ACCGGGCATACCGACCAGGATGGACGAATTAAAGCACTGTGGCCCGAAAAAGCTGCCGCG CCGGGGGATTATCGCGTTATTTTTAAAACCGGCCAGTATTTTGAAAGTAAAAAACTGGAC ACGTTTTTCCCGGAGATTCCCGTCGAGTTTCATATCAGCAAAACGAATGAGCACTATCAT GTGCCGCTGTTATTAAGTCAGTATGGTTATTCAACCTATCGCGGGAGCTAA >11111_1#11_04064 ATGCAAGTAGATGAACAACGTCTGCGTTTTCGCGATGCGATGGCAAGTCTGGCGGCAGCG GTCAACATCGTAACCACGGCGGGTCACGCCGGACGCTGCGGTATCACCGCAACAGCGGTT TGCTCAGTCACTGATACGCCGCCCTCCGTGATGGTATGTATTAATGCCAATAGCGCCATG AACCCCGTTTTTCAGGGCAACGGCAGGCTGTGCATTAATGTACTTAACCATGAGCAGGAG CTGATGGCGCGCCACTTTGCCGGTATGACGGGGATGGCGATGGAGGAGCGTTTTCACCAG CCATGTTGGCAAAACGGGCCGCTGGGCCAGCCGGTACTTAACGGCGCGCTGGCCAGTCTT GAAGGCGAGATCAGCGAGGTACAAACCATTGGCACGCATCTGGTGTATCTGGTGGCGATC AAAAATATTATTCTTAGCCAGGAGGGGCATGGCCTGATTTATTTCAAACGCCGTTTTCAT CCGGTCAGACTTGAGATGGAAGCGCCTGTTTAA >11111_1#11_04065 ATGGGACGCACACCGGATTACAAAGCCGCCTTTGGCTGCGCTCTGGGCGCTAACCCAGCC TTCTACGGCCAGTTTGAGCAGAACGCCCGTAACTGGTACACCCGTATTCAGGAGACCGGC CTGTACTTTAACCATGCAATCGTCAACCCGCCCATTGACCGCCACAAACCTGCCGACGAA GTGAAAGACGTCTATATCAAGCTGGAGAAAGAGACGGACGCCGGGATTATTGTCAGCGGG GCGAAAGTTGTCGCCACTAACTCCGCCCTGACTCACTACAACATGATTGGTTTCGGCTCA GCCCAGGTGATGGGCGAAAACCCGGATTTTGCTCTGATGTTTGTCGCGCCAATGGATGCC GAAGGCGTAAAACTTATTTCGCGCGCCTCGTATGAAATGGTCGCGGGCGCGACGGGCTCG CCGTTTGATTATCCCCTCTCCAGCCGTTTTGATGAAAACGATGCCATTCTGGTGATGGAC AAGGTGCTGATCCCGTGGGAAAACGTATTAATTTACCGTGATTTCGATCGTTGTCGTCGC TGGACGATGGAAGGCGGCTTTGCCCGTATGTATCCACTGCAAGCCTGTGTTCGTCTGGCG GTAAAACTTGATTTCATTACCGCGCTGCTGAAAAAATCGCTCGAATGTACGGGTACCGTA GAGTTCCGGGGCGTGCAGGCCGATCTCGGCGAAGTCGTGGCCTGGCGCAATATGTTCTGG GCATTGAGCGATTCTATGTGTTCTGAAGCAACCCCGTGGGTAAACGGCGCCTGGCTACCG GACCACGCCGCGCTGCAAACCTATCGTGTGATGGCCCCAATGGCCTACGCGAAAATTAAA AATATTATTGAACGTAACGTTACCAGCGGCCTGATTTACCTGCCTTCCAGCGCCCGCGAT CTGAATAATCCGCAAATCGACCAGTACCTGGCGAAATACGTACGCGGCTCTAACGGAATG GACCATGTTGAACGTATCAAAATTCTTAAATTGATGTGGGATGCCATCGGCAGCGAGTTT GGCGGTCGCCATGAGCTGTACGAGATTAACTACTCGGGCAGCCAGGATGAAATTCGTCTG CAGTGTCTGCGTCAGGCCCAGAGCTCCGGCAATATGGATAAGATGATGGCAATGGTCGAT CGCTGCCTCTCCGAATACGATCAGAATGGCTGGACGGTTTCGCATTTGCACAATAACGAC GACATCAATCAACTGGATAAGCTGCTGAAATAA >11111_1#11_04066 ATGCATGATTCATTAACCATCGCCTTGCTTCAGGCGCGCGAAGCGGCAATGACCTATTTC CGCCCCATCGTTAAAAGCCACAATCTGACCGACCAGCAATGGCGCATTGTGCGAATCCTG GCCGATAGCCCCTCTATGGATTTTCACGAGCTGGCCTTTCGTACCTGTATTTTGCGTCCA AGTCTGACCGGAATATTGACGCGCATGGAGCGAGACGGACTGGTGTTGCGACTCAAGCCG GTTAACGATCAGCGTAAGTTATATGTCATGTTGACGGAGCAGGGACAAACGTTGTACGCC CGTGCCCGGAGCGAGGTAGAAGAGGCTTATCGAAAAATTGAGGCCGATTTCACGCCCGAA AAAACACAGCAATTGATGCTGCTGCTGGACGATCTTATTGCTCTGGGGCGCCAGCATCCT GATAGCGAAGCGGAAGCATAG >11111_1#11_04067 ATGAAGGGTACTGTTTTCGCCGTTGCGTTAAACCATCGCAGCCAGCTTGATGCCTGGCAA GAGGCTTTCTCTCAGCCTCCCTATAATGCGCCGCCTAAAACCGCAGTGTGGTTCATCAAG CCGCGTAATACGGTGATTCGTCACGGCGAACCCATTCCTTATCCGCAGGGAGAAAAGGTA CTGAGCGGCGCGACAGTGGCGCTCATTGTGGGGAAAACCGCCAGCCGGATACGCCCTGAA GCGGCGGCGGACTATATCGCCGGGTATGCGCTGGCTAACGAGGTCAGCCTGCCGGAAGAG AGCTTTTATCGCCCGGCGATTAAAGCGAAATGTCGCGATGGCTTTTGCCCGCTGGGTGAA ATGGCGCCGCTGAGTGATGTGGATAATCTCACCATTATCACTGAAATCAACGGACGAGAA GCGGACCACTGGAATACTGCCGATTTACAGCGTAGCGCCGCACAACTGCTTAGCGCGTTA AGTGAGTTCGCTACACTTAACCCTGGCGATGCGATCTTACTTGGTACGCCGCAGAATCGC GTTGCGCTGCGTCCCGGCGATCGGGTGCGTATTCTGGCGAAAGGTTTACCCGCGCTGGAA AATCCGGTTGTCGCAGAAGATGAATTCGCCCGCCACCAGACGTTTACGTGGCCGCTGTCA GCGACGGGAACGTTATTTGCGCTGGGGTTGAACTACGCCGATCACGCCAGCGAGCTGGCA TTTACGCCGCCGAAAGAGCCGCTGGTATTTATCAAAGCGCCAAACACCTTTACCGAACAT CACCAAACGTCGGTGCGCCCGAACAACGTCGAATATATGCACTACGAAGCCGAGCTGGTC GTGGTGATTGGCAAAACGGCGCGTAAGGTGAGCGAAGCCGAAGCCATGGAGTATGTGGCC GGTTACACCGTCTGTAACGACTACGCGATCCGCGACTATCTGGAAAACTACTACCGTCCG AATCTGCGGGTAAAAAGCCGCGACGGCCTGACGCCGATAGGCCCGTGGATTGTGGATAAA GAGGCGGTTTCTGATCCGCACAACCTGACGTTACGCACCTTTGTCAACGGTGAGCTGCGG CAGGAAGGGACGACCGCCGATCTGATCTTCAGCATCCCGTTCCTGATTTCTTATCTGAGC GAATTTATGACGTTGCAACCGGGCGACATGATTGCCACCGGTACGCCGAAAGGGCTGTCC GATGTGGTGCCGGGGGATGAAGTTGTCGTTGAAGTAGAAGGCGTGGGTCGCCTGGTTAAC CGAATCGTCAGTGAGGAGAGCGCAAAATGA >11111_1#11_04068 ATGAAGAAAATAAATCATTGGATTAACGGCAAAAACGTTGCAGGTAACGACTACTTCCAG ACCACTAACCCGGCGACCGGTGATGTGCTGGCGGAAGTAGCCTCCGGCGGTGAAGCAGAA GTGAACCAGGCTGTCGCGGCGGCAAAAGAGGCGTTCCCGAAATGGGCCAACCTGCCGATG AAAGAGCGCGCGCGCCTGATGCGCCGCCTTGGCGACCTGATTGACCAGCATGTGCCGGAA ATCGCGGCGATGGAAACCGCCGACACCGGCCTGCCTATTCACCAGACTAAAACGTGCTGA >11111_1#11_04069 GTGCTGATCCCGCGCGCCTCGCATAACTTCGAATTCTTCGCCGAAGTGTGCCAGCAGATG AACGGCAAGACCTATCCGGTTGACGATAAAATGCTCAATTATACGCTGGTGCAGCCCGTC GGCGTCTGCGCGCTGGTGTCGCCGTGGAACGTGCCGTTTATGACCGCGACTTGGAAAGTT GCGCCGTGCCTGGCGCTGGGTAACACCGCGGTGCTCAAAATGTCCGAGCTGTCGCCGCTG ACTGCCGACAGGCTGGGCGAGCTGGCACTGGAGGCAGGAATTCCGGCAGGCGTGCTGAAC GTGGTGCAGGGCTACGGCGCGACGGCGGGCGATGCGCTGGTACGCCACCATGACGTGCGT GCGGTGTCGTTTACCGGCGGTACCGCCACCGGTCGCAATATCATGAAAAATGCCGGGCTG AAAAAATACTCGATGGAGCTGGGCGGCAAATCGCCGGTGCTGATTTTTGAAGACGCCGAC ATTGAGCGCGCGCTGGACGCCGCGCTGTTCACCATCTTCTCGATCAACGGCGAACGCTGC ACCGCTGGGTCGCGCATCTTTATCCAGCAGAGCATTTACCCTGAGTTCGTGAAGCGCTTT GCCGAACGCGCGAATCGCCTGCGTGTCGGCGATCCGACCGACCCGAACACCCAGGTCGGC GCGCTGATTAGCCAACAGCACTGGGAGAAAGTCTCCGGTTATATCCGCCTCGGCATTGAA GAGGGGGCAACGCTGCTGGCGGGCGGTGCGGAAAAACCCACTGACCTGCCTGCGCATCTG AAAGGCGGTAACTTCCTGCGCCCAACCGTGCTGGCCGATGTCGACAACCGTATGCGCGTT GCGCAGGAAGAGATCTTTGGGCCGGTCGCCTGCCTGCTGCCATTCAAAGACGAAGCGGAA GGGTTACGTTTGGCGAACGATGTGGAATACGGTCTGGCCTCTTATATCTGGACCCAGGAC GTGAGCAAAGTGTTGCGCCTGGCGCGTGGGATTGAAGCCGGCATGGTCTTCGTCAACACC CAGAACGTCCGCGACCTGCGCCAGCCGTTCGGCGGCGTGAAAGCCTCCGGTACCGGGCGC GAAGGCGGCGAATATAGCTTCGAAGTGTTTGCGGAAATGAAAAACGTCTGCATCTCAATG GGCGACCATCCTATCCCAAAATGGGGAGTTTGA >11111_1#11_04070 ATGGGCAAGTTAGCGTTAGCAGCAAAAATTACCCACGTGCCGTCGATGTATCTTTCTGAA CTGCCAGGAAAAAATCACGGTTGTCGTCAGGCAGCCATTGATGGGCATATTGAAATTGGC AAGCGTTGCCGCGAAATGGGCGTTGACACCATTATCGTATTCGACACCCACTGGCTGGTG AATAGCGCTTACCACATTAATTGTGCCGACCATTTCCAGGGCGTCTATACCAGCAACGAA TTGCCGCACTTTATTCGCGACATGACCTATGACTATGACGGTAATCCGGCGCTCGGCCAT CTGATCGCCGACGAGGCGGTCAAACTGGGCGTGCGCGCCAAAGCGCACAACATCCCGAGC CTGAAGCTGGAGTATGGCACGCTGGTGCCGATGCGCTACATGAACAGCGACAAGCACTTC AAAGTGGTCTCCATCTCGGCGTTCTGCACTGTGCATGATTTTGCCGACAGCCGCAAACTG GGCGAAGCCATTCTCAAGGCGATTGAGAAATATGACGGTACCGTAGCGGTATTCGCCAGT GGTTCTCTGTCGCACCGTTTTATTGACGACCAACGGGCGGAAGAGGGGATGAACAGCTAC ACCCGCGAGTTCGATCATCAAATGGACGAGCGCGTGGTCAAGCTGTGGCGCGAAGGCAAA TTCAAGGAGTTTTGCACCATGTTGCCGGAGTACGCCGACTACTGCTACGGCGAAGGCAAC ATGCACGACACGGTCATGCTACTGGGAATGCTGGGGTGGGACAAATACGACGGCAAGGTG GAGTTCATCACCGACCTGTTCGCCAGCTCCGGTACCGGCCAGGTAAACGCTGTTTTCCCG CTGCCTGCGTAA >11111_1#11_04071 ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGC CTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATC CGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCG TTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTC GGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTAT CTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAAC GTACACGCGTTATTTAAATAG >11111_1#11_04072 ATGCTCGATAAACAGACCCATACCCTGATCGCTCAGCGACTTAATCAGGCTGAAAAACAG CGTGAACAGATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAAGATGCCTAT GCCGTACAGCGTGAATGGGTCAATATCAAGATTGCCGAAGGGCGCACGCTCAAAGGCCAC AAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGGATTAC GGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGAGATATCCCCACCGACCGTTTT ATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCTGCGCGGCCCT CACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGGAACTG ATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGTTCGAC ACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCCCATCAAACCA GACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGTGATCGAAGAA ACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGGCGAAC AAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCTCGTTC ACCCGCCCGGTGCCGGCGCGCAAGGGCGACACCTTCCATGTCGATTACGGCAACATGGGC GCGATCAGTTGCCGGTTTGTGTAA >11111_1#11_04073 ATGAAAAATGCTTTCAAAGACGCGTTAAAAGCGGGGCGCCCGCAAATCGGTTTGTGGCTG GGGCTTGCCAACAGTTACAGCGCTGAACTGTTAGCGGGCGCCGGCTTCGACTGGCTACTG ATTGACGGTGAACACGCGCCAAACAACGTGCAGACGGTGTTGACCCAGTTGCAGGCGATT GCGCCTTATCCCAGCCAGCCGGTGGTGCGTCCGTCATGGAACGATCCGGTACAGATTAAG CAACTGCTCGACGTCGGCGCGCAAACGCTGCTGATACCGATGGTGCAGAATGCCGATGAA GCGCGAAACGCCGTGGCGGCTACGCGTTATCCGCCTGCCGGTATTCGCGGCGTGGGCAGC GCGCTGGCGCGGGCATCGCGCTGGAATCGCATTCCGGACTATCTCCACCAGGCCAACGAC GCCATGTGCGTACTGGTGCAGATTGAAACGCGTGAGGCGATGAGCAATCTGGCGTCAATT CTCGACGTGGATGGCATTGACGGCGTGTTTATTGGCCCGGCGGATCTCAGCGCCGATATG GGCTTTGCCGGCAATCCGCAGCACCCGGAAGTGCAGGCGGCGATTGAGAACGCCATCGTG CAGATACGCGCGGCGGGGAAAGCGCCGGGGATTCTGATGGCCAATGAAGCACTGGCGAAA CGTTATCTGGAACTGGGGGCGCTATTTGTCGCCGTCGGCGTTGACACCACGCTGCTGGCG CGCGGAGCGGAGGCGCTGGCGGCGCGCTTTGGCGCAGAAAAAAAACTGTCCGGTGCGTCC GGCGTCTATTAA >11111_1#11_04074 ATGAGCGACACATCATCTGCACTTCCGGAAAGCCCCGAGTCTGTCGGTTCGCACAACGCG CTCAGCACGGGTCAACAAACCGTCATAAATAAACTGTTCCGCCGACTGATCGTATTTTTA TTCGTGTTGTTTATCTTCTCGTTTTTAGACCGTATCAACATCGGTTTTGCCGGGTTGACG ATGGGGCAGGATCTGGGGTTAAGCGCCACCATGTTTGGTCTTGCCACGACGCTGTTTTAC GCCACCTACGTCATTTTCGGCATTCCCAGCAACGTGATGTTGAGCATCGTCGGCGCCCGC CGCTGGATTGCGACCATTATGGTGCTATGGGGCATTGCATCTACCGCCACGATGTTCGCG GTGGGACCGAAAAGCCTGTATGTGCTGCGAATGCTGGTGGGCATTACCGAAGCGGGCTTT TTGCCAGGAATATTGCTCTATTTAACCTACTGGTTCCCGGCATTTTTCCGCGCCCGCGCC AACGCATTATTTATGATTGCCATGCCGGCCACTACCGCGTTGGGGTCAATTGTCTCCGGC TATATTTTATCGCTGGACGGCATATTCAATCTGCATGGATGGCAGTGGTTATTCCTGTTG GAAGGATTTCCGTCAGTTTTGTTAGGCATTATGGTCTGGTTTTACCTGGATGATACCCCG GCAAAAGCCAAATGGCTGACGGCAGAGGATAAAAAATGTTTGCAGGAGATGATGGATAAT GATCGCCTGACGCTGGTTCAGCCTGAGGGGGCCATCAGCCATAACGCCATGCAGCAGCGT AGCCTGTGGCGCGAAGTATTCACGCCAATTGTACTGATGTATACGCTGGCCTATTTTTGC CTTACCAATACGCTTAGCGCCATTAGTATCTGGACGCCGCAAATCCTGAAAAGTTTTAAT GAAGGCAGCAGCAATATCACCATCGGCCTGCTGGCGGCGATCCCGCAGATTTGTACTGTT CTGGGCATGATTTACTGGAGCCGCCATTCGGACAAACATCAGGAGCGTAAACACCACACT GCGTTACCGTTCCTGTTTGCCGCCGCGGGCTGGCTGCTGGCGTCGGCGACCGACCGTAAC CTGATCCAGCTCCTGGGGATCGTGATGGCATCCACGGGTTCCTTTAGCGCGATGGCGATC TTCTGGACCACGCCGGATCAGTCGATCAGTTTACGCGCCAGGGCGATAGGCATTGCGGTC ATCAATGCCACCGGCAATATTGGCTCCGCGCTCAGCCCGGTTATGATTGGCTGGCTAAAA GATATCACTGGTAGCTTCAATAGCGGACTCTGGTTTGTCGCTTCTCTGTTAGTCGTCGGC GCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCGCGCGCCACCCCTTGA >11111_1#11_04075 ATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGACGAAAGCATGGGC AGTAACGATGTGCATTATCAGTCGTTTGCTCGTATGGCGGATTTCTTTGGTCGTGATATG CAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTCTTGATACCGGGCAGATTGAG CTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTGCTAACGCCGCCC TCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTTCTGACGGTACGC GAAGAGCTGGTTTGGCCGCTGCTGGAAGTGCTTTATCCCGGCACCAGAGAGGCCTTCGGC CTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACGAGCTGGCGGCGCTCAAACAT TACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGCGAACATACCTTG GTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAGCTGGACGATCAT GCCGCAACCGGGATGCGCGGTGAACTGAAACTTTTTCAGCGCTTTACCCTGTTAATTGAC AACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCTGTGAGTTGCATATTACCGAA TCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAACGCCTGATTTTT GATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAATGCTGTCAACGAG ATCGCCTGGCAATTAGGTTTTAAAGATCCGGCTTATTTCGCCCGTTTCTTTAATCGCCTT GCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTCCTTCTTTTCTCAACTAA >11111_1#11_04076 ATGATGAAAAAAAGCGTCGCTATGCTGGCGGTTTGTATGCTGGCGCAAAGCCACCTTGCC ATTGCTGCCGGTGCTCCTGCGCCTCAAGAGATCAACATTGTTTTACTGGGCACCAAAGGC GGGCCTTCTTTGCTCAATACAGCCAGACTACCGCAAGCGACGGCGCTCACTATCGGCGAT AAGATATGGCTGATAGATGCCGGCTACGGCGCCAGTCTGCAACTGGTGAAAAATGGCATT CCACTGCGCAACATCAATACTATTTTGCTCACCCATCTGCACAGCGACCACATACTGGAT TATCCTTCCTTGCTGATGAATGCCTGGGCAAGTGGCCTGAAAGACCATACCATACAGGTT TATGGCCCGCCGGGAACCCAGGCGATGACGAAGGCTAGCTGGAAGGTCTTTGACAGGGAT ATCACGTTACGCATGGAAGAAGAGGGGAAACCCGATCCGCGCAACCTGGTTAAGGCGACC GATATCGGCCAGGGCGTCATCTATAAAGATGAACTGGTCACAATAAGCGCGCTGAAAGTG CCTCATTCCCCTTTCCCGGACGGTGAAGCGTTTGCTTACCGTTTTGATACTCAGGGTAAG CGAATCGTCTTCTCTGGCGATACGTCCTGGTTTCCTCCGCTTGCAACGTTTGCCCAGGGG GCGGATATCCTGGTACATGAGGCGGTACATGTCCCTTCGGTAGCAAAACTGGCTAATAGT ATTGGCAACGGAAAAACGCTGGCTGAAGCGATTGCGTCGCATCACACCACGATTGAAGAT GTCGGTAAGATTGCTCGCGAGGCCCACGTGAAAAAACTGGTGTTAAGTCATCTGGTGCCT GCGACGGTTGCGGATGACGTCTGGCAACAGGAAGCCATGAAAAATTACCCGGGCCCTGTC ATTGTCGGTCATGACAATATGACGATAAGCGTACCGTAA >11111_1#11_04077 ATGGCTAACATCACTGTCACCTTTACCATCACCGAATTTTGTTTGCACACCGGCGTGACG GAAGAGGAGCTAAACGAAATCGTCGGACTTGGCGTAATTGAGCCTTACGAAGACGATAAC GCCGACTGGCAATTCGACGATCGCGCAGCGAGCGTGGTACAACGCGCGCTACGCTTACGC GAGGAGCTGGCGCTCGACTGGCCAGGGATCGCGGTCGCGTTAACGCTGCTGGAAGAGAAT TCACGGCTGCGCGAAGAAAACCGGTTACTGCTGCAACGCCTTTCTCGCTTTATCTCGCAT CCCTAA >11111_1#11_04078 ATGGAACTTAAGGATTATTACGCCATTATGGGCGTGAAACCGACGGACGATCTCAAGACG ATTAAGACCGCCTATCGCCGACTGGCCCGCAAGTACCATCCAGATGTCAGCAAAGAACCC GATGCCGAAGCCCGTTTCAAAGAGGTTGCTGAAGCATGGGAAGTGCTGAGTGATGAGCAA CGGCGCGCCGAGTATGACCAGTTATGGCAACACCGTAACGATCCACAATTTAATCGCCAG TTCCAGCAACACGAAGGCCAGCCGTATAACGCCGAAGATTTTGATGATATTTTCTCGTCT ATTTTTGGTCAGCACGGTCGTCATTCGCACCACCGCCACGCCGCACGCGGTCATGATATC GAAATTGAAGTGGCGGTATTCCTGGAAGAAACGCTGGAAGAGCACCAGCGTACGATTAGC TATTCCGTCCCCGTTTATAACGCGTTCGGCCTGGTGGAGCGGGAAATTCCCAAAACATTG AATGTGAAAATCCCGGCTGGCGTCAGCAACGGGCAACGAATCAGACTGAAAGGCCAGGGC ACGCCGGGGGAAAACGGCGGACCTAATGGCGATTTATGGCTCGTTATCCATATTGCCCCG CATCCGCTCTTTGATATCGTCAATCAGGATCTGGAAGTCGTCCTTCCGCTTGCCCCATGG GAGGCGGCGCTCGGCGCTAAGGTGTCTGTGCCAACGCTTAAAGAGCGTATTTTGCTGACC ATTCCCCCCGGCAGCCAGGCAGGTCAGCGGCTGCGTATCAAAGGAAAAGGATTAGCCAGT AAAAAGCACACTGGCGATCTCTATGCCATCATCAAAATCGTTATGCCGCCGAAACCTGAC GAGAAAACAGCTGCCCTGTGGCAACAACTGGCGGACGCGCAGTCGTCCTTTGACCCACGC CAGCAATGGGGGAAAGCATAA >11111_1#11_04079 ATGGCGAAACAACAACGGATGGGCTGGTGGTTTCTTTGCCTTGCATGTGTCGTGGTAATG GTTTGTACCGCGCAACGCATGGCGGGCCTGCACGCCTTGCAGATGCAGGCGACGGCCTCT GCTGCGGTGGTCAGCGCTCCCTCCTCGACAGATGACGGCTCGCCGGTCACTCCCTGCGAA TTAAGCGCCAAGTCGCTGCTGGCGGCGCCTCCAGTACTCTTTGAAGGTGCTATCCTTGCG CTTTATCTACTGCTTTCCTTACTGGCGCCTGTCCGGGTCATGCGCCTGCCGTTTTCGCCT CCACGGGCTATTTCGCCGCCCACATTACGGGTACATCTACGATTTTGTGTCTTCCGTGAA TGA >11111_1#11_04080 ATGATGATTTTATTCAGGCGGATACTGTTCTGCCTGTTATGGCTTTGGCTGCCCGTCTCC TGGGCGGCGGAAAGCGGCTGGCTGCGTTCGCCCGATAACGACCATGCCAGCATACGGCTA CGTGCCGATACGTCCGCTAACAGTGAGACCCGGCTGTTGCTGGATGTCAAACTGGAAAAC GGCTGGAAAACCTACTGGCGCGCGCCGGGGGAAGGGGGCGTGGCACCCTCTATCGCCTGG AAAGGCGACATGCCTGAGGTAAGCTGGTTCTGGCCAACCCCCTCGCGCTTTGATGTGGCG AATATCACCACCCAGGGATATCACGACGAGGTGACCTTTCCGATGATCGTGCGCGGTACG CCGCCGGCGACCTTGCGCGGTGTGTTGACGTTATCAACCTGCAGCAATGTTTGTCTGTTG ACCGATTACCCCTTTTCCGTGACGCCCACTGTGCAGAATGCCGATTTTGCCCATGACTAT GCGCGGGCGATGGGTAAAGTTCCGCTCCGCAGTGGGCTAACGGACTCGCTTGACGTTGGC TATCGCCCGGGAGAACTGGTGGTCACTGCTACGCGAGCGGCGGGCTGGTCATCGCCCGGG CTCTATCTTGACACCATAGATGACGTCGATTTTGCGAAGCCTCGCCTGCGCGTAGAGGGC GACAGGTTACAGGCGACGGTGCCGGTGACGGACAGTTGGGGCGAAAAGGCGCCCGATTTG CGCGACAAATCGCTGACCCTCGTGTTAGCCGATGGCGCTATCGCCCAGGAGAGCACGCAA ACCATTGGCGCTGCGCCAGCGCAAACGCCGGACAATGCGGCGCTACCTTTCTGGCAAGTT GTAATGATGGCGCTAATCGGCGGACTGATTCTTAATTTAATGCCCTGCGTACTGCCTGTT CTGGGCATGAAACTTGGCTCTATTTTATTGGTAGAGGAAAAAAGCCGCTCTCACATCAGG CGACAATTTTTGGCTTCGGTCGCCGGTATCATTGCGTCATTTATGGCGCTGGCGGCGTTT ATGACCCTCCTTCGCCTGTCAAACCATGCGCTGGCCTGGGGAGTCCAGTTCCAGAATGCA TGGTTTATTGGTTTTATGGCGCTGGTGATGTTGTTGTTTAGCGCCAGCCTGTTCGGGCTT TTTGAGTTCAGGCTTCCCTCATCTATGACCACGAAACTGGCCACTTACGGCGGTAACGGT ATGTCGGGACATTTCTGGCAGGGGGCGTTCGCCACGCTGCTGGCGACGCCTTGTAGCGCG CCGTTTCTGGGCACGGCGGTCGCGGTGGCGCTCACGGCGTCGCTGCCGACGCTGTGGGGG CTGTTCCTTGCGCTTGGCCTGGGAATGAGCGCGCCGTGGCTACTGGTCGCGATACGACCA GGGCTTGCGCTACGTTTACCGCGCCCCGGGCGTTGGATGAATGTCCTGCGCAGGATCCTC GGTCTGATGATGCTGGGGTCGGCTATCTGGCTGGCGACGTTACTCCTGCCGCATTTCGGC TTCACTGCGTCAAAGAGCGCGCAAGACACGGTTCAGTGGCAACCGTTGAGTGAACAGGCA ATCCAGTCGGCGCTGGCGCAGCATAAGCGGGTATTTGTCGATGTCACTGCGGACTGGTGT ATTACCTGTAAAGTGAATAAATACAACGTCCTGCAAAAAGAGGATGTGCAGGCCGCCTTG CAACAGCCGGATGTTGTGGCGCTGCGGGGAGACTGGACGCTGCCGTCCGATGCCATTACA GATTTTCTGAAAACGCGCGGCCAGGTCGCCGTGCCGTTTAATCAGGTATATGGCCCCGGT TTGCCGGAAGGGGAGGCACTGCCCACTTTGCTGACCCGCGATGCGGTATTACAAACGTTG AAAAAAGCGAAAGGAATAACCCAATGA >11111_1#11_04081 ATGAAATACATGATTGTTTTACTGCTGGCGCTGTTTTCGACGCTGAGCATCGCGCAAGAA ACCGCTCCTTTTACGCCGGATCAGGAAAAGCAGATTAAAAATCTGATCCATGCGGCGTTG TTTAACGATCCTGCCAGCCCGCGGATAGGCGCTAAACACCCTAAGCTGACGCTGGTGAAC TTTACGGATTACAACTGCCCGTACTGCAAACAGCTCGATCCGATGCTGGAAAAGATTGTG CAGAAATATCCTGACGTTGCGGTCATTATTAAACCGCTGCCATTCAAAGGAGAGAGTTCC ATACTGGCGGCGCGTATTGCGCTGACCACCTGGCGCGATCATCCGCAACAGTTCCTCGCG CTACATGAAAAACTTATGCAAAAGCGCGGTTACCATACGGATGACAGTATTAAACAGGCC CAGCAGAAAGCAGGGGCGACGCCAGTGACGCTGGATGAAAAAAGCATGGAAACGATACGC ACTAATTTGCAGTTGGCAAGACTGGTCGACGTGCAAGGAACGCCAGCGACGATCATTGGC GACGAGCTGATTCCGGGCGCAGTGCCCTGGGATACGCTGGAAGCGGTGGTGAAAGAAAAA CTGGCGGCTGCCAATGGCGGGTAA >11111_1#11_04082 ATGGCGGGTAAACTGCGGCGTTGGCTGCGTGAAGCCGCGGTTTTTCTGGCGCTCCTCATC GCGATAATGGTGGTCATGGACGTCTGGCGCGCGCCGCAGGCGCCTCCGGCGTTTGCCGCG ACACCATTACATACGCTGACGGGAGAGTCGACAACTCTGGCGACCTTGAGCGAGGAACGC CCCGTACTGCTCTATTTTTGGGCCAGCTGGTGCGGGGTATGCCGCTTTACCACGCCTGCG GTCGCTCACCTGGCGGCGGAAGGGGAAAACGTCATGACCGTTGCGCTCCGCTCCGGCGGT GATGCTGAGGTTGCCCGCTGGCTGGCGCGCAAGGGCGTTGACTTCCCGGTCGTCAATGAT GCTAACGGCGCCTTATCCGCTGGCTGGGAAATCAGCGTGACGCCAACGCTGGTGGTGGTT TCACAAGGTCGGGTTGTGTTCACCACCAGCGGCTGGACCAGCTATTGGGGCATGAAGCTT CGGCTGTGGTGGGCAAAAACGTTCTGA >11111_1#11_04083 ATGAAAAAATCATTACTCGCTGTTGCTGTGGCAGGGGCTGTTTTGTTGTCATCCGCCGTA CAGGCGCAGACAACGCCGGAAGGTTATCAATTACAACAGGTGCTGATGATGAGCCGCCAT AATCTGCGGGCGCCGCTGGCGAATAATGGCAACGTACTGGCGCAGTCGACGCCGAACGCC TGGCCGGCGTGGGACGTTCCCGGCGGGCAACTGACGACGAAAGGCGGCGTGCTGGAAGTC TATATGGGACACTACACACGTGAATGGCTGGTCGCGCAGGGGCTGATACCGTCGGGAGAA TGTCCGGCGCCCGACACGGTATATGCCTATGCGAATAGTTTGCAGCGCACCGTCGCCACC GCGCAATTTTTCATTACCAGCGCTTTCCCCGGCTGTGATATTCCTGTTCATCATCAGGAA AAAATGGGCACTATGGACCCTACCTTCAATCCGGTGATTACCGATGATTCCGCCGCGTTC CGGCAACAGGCCGTACAGGCGATGGAAAAGGCGCGTAGTCAGCTACATCTTGATGAGAGT TATAAACTGCTTGAGCAGATAACGCATTATCAGGACTCGCCGTCCTGCAAAGAGAAGCAT CAGTGTTCGCTAATCGACGCGAAAGATACCTTCAGCGCGAACTATCAGCAAGAGCCTGGC GTGCAGGGGCCGCTGAAAGTAGGGAACTCGCTGGTGGATGCGTTTACCCTGCAATATTAC GAAGGCTTTCCGATGGATCAGGTCGCTTGGGGCGGGATCCACACCGATCGGCAGTGGAAG GTGCTGTCAAAACTGAAAAACGGCTACCAGGACAGCCTGTTTACCTCACCCACGGTGGCG CGCAATGTCGCTGCGCCGCTGGTAAAATATATCGATAAGGTGCTGGTTGCCGAGCGCGTT AGCGCGCCGAAGGTTACCGTGCTGGTGGGGCATGATTCCAATATCGCGTCGCTGCTGACG GCGCTGGATTTTAAACCCTATCAGCTCCATGACCAGTATGAGAGAACGCCGATTGGTGGT CAGCTTGTCTTCCAACGCTGGCATGACGGTAACGCTAACCGGGATTTGATGAAAATCGAG TATGTCTACCAGAGCGCCCGGCAGTTACGTAATGCGGAAGCGTTAACGCTCAAATCGCCT GCGCAAAGGGTAACGCTGGAACTGAAAGGATGTCCGGTGGATGCGAACGGCTTCTGTCCG CTGGATAAGTTCGATAACGTCATGAACACTGCTGCAAAATAG >11111_1#11_04084 ATGCCAACTCAAGAAGCAAAAGCGCACCGCGTCGGCGAATGGGCAAGCCTGCGTAATACG TCGCCGGAAATTGCCGAAGCCATTTTTGAAGTCGCTCACTATGACGAGAAACTGGCAGAA AAAATATGGGAAGAAGGTAGCGATGAGGTGCTGATCAAAGCCTTTGAGAAAACGGACAAA GACTCGCTCTTCTGGGGCGAACAAGTCATCGAACGTAAGAACGTATAA >11111_1#11_04085 ATGGCAAAGATTCTGGTGCTCTATTATTCCATGTACGGACACATTGAAACCATGGCGCAC GCGGTGGCGGAAGGGGCAAAGAAAGTCGACGGCGCAGAGGTCATTATAAAGCGTGTGCCA GAAACAATGCCGCCTGAAATCTTCGCAAAAGCTGGCGGTAAAACGCAAAACGCACCGGTT GCCACCCCACAGGAGCTGGCGGATTACGATGCCATTATTTTTGGTACGCCAACCCGGTTT GGCAATATGTCAGGCCAGATGCGTACCTTCCTGGACCAAACCGGCGGACTGTGGGCATCC GGCGCGCTATACGGCAAGCTCGGCGGCGTGTTCAGTTCTACCGGAACGGGCGGCGGCCAG GAGCAGACCATCACCTCGACCTGGACTACGCTTGCCCATCATGGGATGGTGATTGTCCCG ATAGGCTATTCCGCACAGGAACTGTTTGACGTCTCCCAGGTTCGCGGCGGTACGCCTTAC GGCGCAACGACTATCGCTGGAGGCGACGGTTCACGTCAACCAAGCCAGGAGGAACTCTCT ATCGCTCGCTATCAGGGGGAATACGTCGCCGGTCTGGCAGTCAAACTCAACGGCTAA >11111_1#11_04086 ATGGCAAACCATCGTGGCGGTTCCGGTAATTTTGCGGAAGACCGCGAAAGAGCATCAGAA GCAGGTCGTAAAAGTGGTCAGCACAGCGGGGGCAATTTTAAGAATGACCCGCAGCGTGCA TCCGAAGCAGGCAAAAAAGGGGGCAAAAGCAGTAACCGTAATCGCTAG >11111_1#11_04087 ATGTCGCAACGCACAGAGAAAAAAATCGGGAAACGTTCGCAGGCCACCGGTGCAAAACGG CAGCTTATCTTAACCGCCGCGCTTGCCGTTTTTTCCCAGTATGGCATTCATGGCGCGCGT CTTGAACAGGTCGCCGAGCGGGCAGGCGTCTCCAAAACCAATCTGCTTTATTATTATCCC TCGAAAGAGGCGCTGTATGTCGCGGTAATGCGACAGATTCTGGATGTCTGGTTGGCGCCG CTCAAGGCGTTTCGCGCAGAATTTTCCCCTCTGGAGGCCATCAAAGAGTATATCCGTCTC AAGCTGGAGGTTTCGCGTGATTATCCGCAGGCGTCGCGGCTCTTCTGCATGGAGATGCTG GCGGGCGCGCCGCTCTTAATGGATGAACTGACCGGCGATCTAAAAGCGTTGATAGATGAA AAATCCGCGCTGATTGCCGGATGGGTGCACAGCGGGAAACTCGCGCCCGTTTCTCCGCAT CATTTGATCTTCATGATTTGGGCCGCCACGCAACATTACGCCGATTTCGCCCCTCAGGTT GAAGCGGTAACCGGCGCGACGCTTCGCGATGAAGCCTTTTTCAACCAAACGGTCGAAAGC GTTCAGCGCATTATTATTGAAGGGATTCGCGTGCGTTAA >11111_1#11_04088 ATGAAACGAATTTTCCTTACCTGCGCGGCGTTGTTGTTCAGCAGTCAGGCGTTGGCCGAT GAGTGTGCCAGCGCCAGTACGCAGCTGGAAATGAATCGCTGCGCCGCCGCGCAATACCAG GCGGCAGATAAAAAGCTGAACGAAACCTATCAAAGCGCGATTAAGCGTGCGCAACCGCCG CAGCGTGAGCTATTGCAAAAAGCGCAGGTGGCATGGATTGCCCTGCGCGACGCCGATTGC GCGCTGATTCGCTCAGGTACGGAGGGCGGCAGCGTTCAACCCATGATCGCCAGCCAGTGC CTGACCGATAAAACGAACGAACGCGAAGCGTTTTTAGCCTCGCTGCTGCAATGTGAAGAG GGTGATTTGAGCTGCCCACTGCCGCCAGCCGGTTAA >11111_1#11_04089 ATGGGAACCACCACGATGGGGGTTAAGCTGGACGACGCCACGCGCGAACGGATCAAAATG GCCGCGTCGCGTATCGATCGCACGCCGCACTGGTTAATAAAACAGGCAATCTTTAGCTAT CTGGACAAGCTGGAAAATAGCGATACGCTACCGGAGCTACCTGCGCTGTTTGCCGGCGCG GCAAATGAAAGCGAGGAGCCGGTCGCGCCGCAGGATGAGCCGCATCAGCCCTTTCTGGAG TTTGCCGAACAGATTCTTCCCCAATCCGTCTCTCGCGCCGCCATCACCGCCGCCTGGCGC CGCCCGGAAACCGATGCGGTGTCAATGCTAATGGAACAGGCGCGCCTGTCGCCGCCTGTC GCTGAGCAGGCGCATAAACTGGCGTATCAACTGGCGGAGAAATTGCGCAATCAAAAATCC GCCAGCGGTCGCGCGGGTATGGTGCAAGGCCTGTTGCAGGAGTTTTCCCTCTCTTCGCAA GAAGGCGTAGCGCTGATGTGTCTGGCGGAAGCGCTGCTGCGTATTCCCGACAAAGCTACG CGCGATGCGTTAATTCGCGACAAAATCAGTAATGGCAACTGGCAGTCGCATATTGGCCGT AGCCCGTCGCTGTTTGTAAACGCCGCCACCTGGGGGCTGCTCTTTACCGGCCGACTGGTC TCAACGCATAACGAAGCCAATCTTTCGCGCTCGCTGAACCGCATTATCGGCAAGAGCGGC GAACCGTTAATCCGCAAAGGCGTCGACATGGCGATGCGTTTAATGGGCGAGCAGTTCGTG ACTGGCGAAACCATTGCTCAGGCGCTGGCGAATGCCCGAAAACTGGAAGAGAAAGGGTTC CGCTATTCTTACGATATGCTGGGCGAAGCCGCGTTAACCGCCGCCGATGCGCAGGCCTAT ATGGTCTCTTACCAGCAAGCGATTCATGCCATCGGCAAAGCGTCTAACGGTCGCGGTATT TACGAAGGGCCAGGCATCTCGATTAAGCTGTCCGCCCTGCATCCACGCTATAGTCGCGCG CAATACGATCGGGTAATGGAGGAGCTTTATCCGCGCCTGAAATCCCTGACGCTGCTGGCG CGCCAGTATGATATCGGTCTCAATATCGACGCCGAAGAGGCGGATCGTCTGGAGATCTCG CTTGATCTGCTGGAAAAACTCTGCTTCGAACCCGAACTGGCGGGCTGGAACGGCATTGGC TTTGTGATTCAGGCTTACCAGAAACGCTGCCCGCTGGTCATTGATTATTTAGTCGATCTG GCCTCCCGTAGCCGCCGTCGGCTGATGATTCGTCTGGTGAAAGGCGCCTACTGGGATAGC GAGATCAAACGCGCGCAAATGGAAGGGCTGGAGGGCTATCCAGTTTATACCCGCAAAGTG TATACCGATGTCTCTTATCTGGCCTGCGCGAAAAAACTGCTCGCCGTCCCTAATCTGATC TACCCGCAGTTCGCGACCCATAACGCTCACACACTGGCGGCGATTTATCATCTGGCCGGG CAAAATTACTATCCGGGTCAGTACGAATTCCAGTGCCTGCACGGCATGGGAGAACCGCTG TATGAACAGGTCACCGGTAAAGTGGGGGACGGAAAACTTAACCGTCCCTGCCGTATTTAC GCGCCGGTGGGAACACACGAAACCCTGCTGGCCTATCTGGTACGACGCCTGCTGGAAAAC GGCGCCAACACCTCTTTTGTCAACCGCATCGCCGATGCCACCCTACCGCTCGATGAACTG GTGGCCGACCCGGTCGAGGCCGTGGAAAAACTGGCGCAGCAGGAAGGTCAGGCTGGCATA CCGCATCCAAAAATTCCGCTGCCGCGCGATCTGTACGGCGAAGGTCGGATAAACTCCGCC GGACTTGATTTAGCGAATGAACATCGCCTCGCCTCGCTTTCTTCTGCCCTGTTAAGCAAC GCCATGCAGAAATGGCAGGCCAAACCTGTGCTGGAACAACCGGTGGCCGACGGTGAGATG ACGCCGGTTATCAACCCGGCGGAACCGAAAGATATTGTTGGCTGGGGACGCGAAGCGACA GAAAGCGAGGTTGAACAGGCGTTGCAAAACGCGGTCAATCAGGCGCCGGTTTGGTTTGCG ACGCCGCCGCAAGAACGCGCCGCTATTTTGCAGCGGGCGGCGGTATTGATGGAAGACCAA ATGCAGCAGTTGATTGGCCTGTTGGTGCGTGAAGCGGGGAAAACGTTCAGCAACGCCATT GCCGAAGTGCGCGAAGCGGTAGACTTCCTCCATTATTATGCCGGTCAAGTGCGTGACGAT TTCGATAACGAAACGCATCGCCCGTTAGGGCCGGTGGTCTGTATCAGTCCGTGGAACTTT CCGCTGGCCATTTTCACTGGCCAAATCGCCGCCGCGCTGGCGGCAGGTAACAGCGTTCTG GCGAAACCGGCAGAGCAGACATCGCTGATTGCCGCCCAGGGCATTGCCATTTTGCTGGAA GCGGGCGTACCGCCGGGCGTCGTGCAACTGTTGCCGGGACGGGGAGAAACCGTCGGCGCC CAGCTTACCGCCGATGCGCGTGTACGCGGCGTGATGTTTACCGGTTCCACGGAGGTCGCG ACGTTGTTGCAGCGCAACATCGCCACGCGTCTTGACGCCCAGGGGCGCCCTATTCCGTTG ATTGCGGAAACCGGCGGTATGAACGCTATGATTGTCGACTCTTCCGCGCTCACCGAGCAG GTGGTCGTGGATGTGCTGGCTTCCGCCTTCGACAGCGCCGGACAACGCTGTTCCGCGCTC CGCGTGCTGTGTTTGCAGGACGATATCGCCGAACATACGCTGAAAATGTTACGCGGCGCG ATGGCGGAGTGTCGGATGGGGAATCCAGGCCGTCTGACGACCGATATCGGGCCGGTGATC GATAGCGAGGCCAAAGCCAACATTGAACGTCATATCCAGACGATGCGCGCCAAAGGCCGC CCGGTTTTCCAGGCCGCGCGTGAAAACAGCGATGACGCGCAGGAATGGCAGACCGGTACG TTTGTTATGCCCACGCTTATTGAGCTGGAAAACTTCGCAGAACTGGAAAAAGAGGTCTTC GGGCCCGTGCTGCACGTCGTGCGTTATAACCGTAACCAACTGGCGGAGCTTATCGAACAG ATTAACGCTTCCGGCTACGGGCTAACGCTGGGCGTACATACCCGTATTGATGAAACCATT GCGCAAGTCACCGGTTCCGCCCATGTCGGCAACCTGTACGTTAACCGTAATATGGTGGGC GCGGTCGTCGGCGTCCAGCCGTTTGGCGGCGAAGGCCTGTCCGGCACCGGGCCAAAAGCG GGAGGGCCGCTCTATCTCTACCGCCTGCTGGCACACCGCCCGCCCAATGCGCTCAATACG ACGCTGACTCGTCAGGATGCGCGTTACCCGGTGGATGCGCAGCTTAAAACCACGCTACTC GCGCCGTTGACCGCTCTGACGCAATGGGCGGCGGATCGCCCGGCGCTACAGACGCTCTGC CGACAATTCGCCGATCTGGCGCAGGCCGGCACGCAGCGCCTGCTACCGGGGCCGACCGGC GAGCGTAATACCTGGACGCTGTTGCCGCGTGAACGGGTGTTATGCCTGGCTGATGATGAA CAGGACGCGTTGACGCAGCTTGCCGCCGTTCTCGCCGTCGGCAGTCAGGCGCTATGGTCA GACGACGCCTTCCACCGCGATCTGGCGAAACGTCTCCCCGCCGCCGTCGCGGCGCGTGTC CAGTTTGCGAAAGCGGAAACGCTGATGGCGCAGCCGTTTGACGCGGTGATTTTCCACGGC GACTCCGACAAGCTGCGAACCGTGTGCGAAGCCGTCGCCGCCCGCGAAGGCGCGATAGTG TCGGTACAGGGGTTCGCCCGCGGCGAAAGCAATATGCTGCTGGAACGGCTCTATATTGAA CGTTCGCTGAGCGTAAACACTGCCGCCGCTGGCGGTAATGCCAGCCTGATGACAATTGGC TAA >11111_1#11_04090 ATGGCTATTAGCACACCGATGTTGGTGACATTCTGTGTCTATATTTTTGGCATGATATTG ATTGGGTTTATCGCCTGGCGCTCAACCAAAAACTTTGATGACTATATTCTTGGCGGTCGC AGCCTGGGGCCGTTTGTTACGGCTTTATCAGCCGGCGCGTCGGATATGAGCGGCTGGCTG TTAATGGGGCTGCCTGGCGCTATCTTTCTGTCGGGGATCTCTGAAAGCTGGATCGCCATT GGCCTGACGTTAGGCGCATGGATTAACTGGAAGCTGGTGGCCGGGCGCCTGCGCGTGCAT ACCGAATTTAACAATAACGCGCTCACGCTGCCGGACTATTTTACCGGTCGGTTTGAGGAT AAGAGCCGAGTCCTGCGTATTATTTCCGCGCTGGTCATTCTGCTGTTTTTCACTATCTAT TGCGCATCAGGTATTGTCGCTGGGGCACGACTGTTCGAAAGCACCTTCGGTATGAGCTAT GAAACCGCACTGTGGGCGGGGGCCGCGGCAACCATTATTTATACCTTTATCGGCGGGTTT CTTGCCGTTAGCTGGACGGATACCGTTCAGGCCAGCCTGATGATTTTTGCGTTAATCCTG ACGCCGGTGATGGTTATTGTCGGCGTAGGCGGTTTTAGCGAGTCGCTGGAAGTGATCAAG CAAAAGAGCATCGAGAATGTCGACATGCTCAAGGGGCTGAATTTTGTCGCTATTATTTCT CTGATGGGCTGGGGGCTGGGTTACTTCGGTCAGCCGCATATCCTGGCGCGCTTTATGGCG GCGGATTCCCATCACAGTATTGTTCATGCGCGTCGTATCAGTATGACCTGGATGATTCTG TGTCTGGCGGGCGCGGTGGCGGTGGGCTTCTTTGGCATTGCGTACTTTAACAATAACCCC GCGCTGGCCGGGGCGGTGAACCAAAACTCAGAACGCGTATTTATTGAACTGGCGCAGATC CTGTTTAACCCGTGGATTGCCGGTGTTCTGCTGTCTGCTATCCTGGCGGCGGTGATGTCG ACGTTGAGCTGTCAGTTGCTGGTATGCTCCAGCGCGATTACGGAAGATTTATATAAGGCT TTTCTGCGTAAAAGCGCCAGCCAGCAAGAGCTGGTATGGGTAGGGCGAGTGATGGTGCTG GTGGTAGCGCTGATCGCCATTGCGCTGGCGGCGAATCCTGATAACCGTGTGCTGGGGCTG GTGAGCTACGCCTGGGCTGGATTCGGCGCGGCATTTGGACCTGTTGTCCTGTTTTCTGTG ATGTGGTCGCGTATGACACGTAACGGCGCGCTGGCGGGAATGATTATTGGCGCGGTGACG GTTATCGTCTGGAAACAATATGGCTGGCTGGATCTGTATGAGATTATCCCTGGCTTCATT TTCGGCAGCCTGGGGATCGTAATCTTTAGCCTGCTTGGCAAAGCGCCGACAGCAACGATG CAGGAACGCTTTGCAAAAGCGGACGCGCATTATCATTCCGCGCCGCCGTCGAAGCTACAG GCGGAATAA >11111_1#11_04091 ATGGTAATGTCCGCACCAGGACACATTGTTTACAGTAGTTACAACACCCTGTACGGACAT TCTCTCTCCGGTGGTGGTCTTGTCATCTTAAAAGCTCTCATCATTTCCCTTACTGTCCAT ACCCATGACGCCATATGTGGTGCGCGTAGCCGTGTGTGGCGTCGTTTCAAAAAGCAAGCT AAGGCTTACAAGGAAGCCAACCCTCAGATGTGTGTGCGCATAATCGCGTTCAAGAGAACG CGGGTGATGTATACCTACAACTCAAGGTGCTATCCATGGGAAGACAAAAAGCAGTGA >11111_1#11_04092 ATGGGAAGACAAAAAGCAGTGATCAAAGCTCGTCGTGAAGCAAAGCGTGTGTTGAGACGA GATTCGCGTAGTCATAAGCAACGTGAAGAAGAATCGGTCACGTCACTGGTACAGATGGGC GGAGTAGAAGCCATTGGCATGGCGCGCGATAGTCGCGATACCTCTCCTGTTAAGGCGCGA AATGAAGCACAGGCGCATTATCTGAACGCTATCGACAGTAAACAGCTTATTTTTGCGACC GGCGAAGCCGGCTGCGGAAAAACATGGATCAGTGCGGCAAAGGCGGCAGAAGCATTGATT CATAAGGACGTCGAGAGGATCATTGTGACGCGTCCGGTATTGCAGGCTGATGAAGATCTT GGTTTTTTGCCCGGTGATATCGCTGAAAAATTCGCGCCTTATTTTCGTCCCGTCTACGAT GTCCTGCTTAAACGGTTGGGCGCGTCCTTTATGCAATATTGTTTGCGCCCGGAAATCGGT AAGGTAGAAATTGCCCCGTTCGCCTATATGCGTGGGCGTACTTTTGAAAATGCGGTCGTG ATCCTCGACGAGGCGCAAAATGTGACTGCGGCGCAAATGAAAATGTTTTTGACGCGATTA GGCGAAAATGTCACGGTCATTGTCAATGGCGATATTACGCAATGCGACCTGCCGCGCGGT GTGCGTTCCGGGTTGAGTGATGCGTTGGAACGCTTTGAAGAAGATGAAATGGTGGGGATT GTGCATTTCAACAAAGACGACTGCGTGCGCTCGGCGCTTTGTCAGCGAACGCTCCACGCA TACAGCTAA >11111_1#11_04093 ATGGAGCCTCAACCCCCACGTCTTAAACCCGGAAAAATCCTTGACACTCTGGGTGCTATG CAAAAAAGCCTGACACGTGCCTCCCAGCGTATTGCGCAATATATTTTAGCCTTCCCCAGA CAGGTGACACAGTCATCTATTGCCGATTTGTCGCGCGACACACAGGCCGGAGAAGCCACG GTTATTCGCTTTTGTCGCACCCTGGGCTATAAAGGTTTTCAGGATTTTAAAATGGACCTG GCCATTGAACTTGCCACTACCGAGTCTGATGACAGTAGTCCTCTACTGGATGCCGAAGTT AGCGAATCCGACGATGCCCACGCCATTGGTTTAAAATTGCAGAACACCATTAGTAATGTA TTATCTGAAACGCTAAATCTGCTTGATATGCAACAGGTTCTCGGTGTCGTGGACGCCCTA CGTCACTGTCACTCAGTTTATATCTTTGGTGTGGGCTCATCGGGGATCACGGCGCTGGAT ATGAAACACAAGCTAATGCGTATTGGTTTACGGGGCGATGCGGTAAGCAATAACCATTTT ATGTACATGCAGGCTACGCTATTAAAAGCAGGCGATGTCGCGATGGGTGTCAGTCACTCG GGCACATCGCCAGAAACAGTGCATTCACTCCGATTGGCCCGACAGGCTGGCGCCACCACA GTCGCCATTACCCATAATCTGGGTTCTCCATTATGTGAAGAGGCCGATTTTTGCCTGATC AATGGTAATCGGCAAGGAATGTTGCAGGGTGACTCGATCGGTACGAAAGCCGCGCAGCTT TTCGTCTTTGACCTGCTCTATACCCTTCTTGTACAGTCCTCGCCGGAACAGGCCCGAGAA AGCAAATTACGGACAATGAATGCCCTGGACATGACAAAATAA >11111_1#11_04095 GTGATATGTCTCAAAGTCCAGGGCGGCATTGGTGAAATTTTTACGGTGACGCAGCAGGCG GATAAATTCTTTCCGGCTACGCAGTTCCACTGGAGCTGGACGGAAAGCACAGTACCTGTA TTGATGATTGGTTTTCTGTTTGCCAATATTCAGCAATTTACTGCCAGTCAGGATGTGGTC CAACGCTATATCGTGACTGACTCCATAGAGGAAACGAAGAAAACATTACTTACAAATGCC AAACTGGTTGCTGTGATCCCTGTTTTCTTTTTTGCTATCGGCTCGGCATTATTTGTCTAC TATCAGCAACATCCACAATTATTACCGGCGGGATTCAACACTGGCGGCATTTTGCCCTTA TTCGTGGTCACCGAAATGCCAGTCGGCATTGCAGGGTTGATAATCTCCGCTATTTTCGCT GCCGCGCAGTCCAGCATCTCCAGCAGCTTAAACAGCATTTCCAGTTGTTTTAATTCCGAT ATCTATCAGCGTTTGAGTCATAAAAAAGGAACGCCAGAAAACCGTATGAAAATAGCTAAG TTAGTTATTCTGGTCGCGGGCCTGATAAGTAGCGCGGCCTCGGTATGGCTGGTCATGGCC GATGAATCAGAAATCTGGGATGCATTTAATAGTCTGATAGGTCTGATGGGAGGGCCAATG ACCGGTCTGTTCATGCTGGGCATTTTCTTTAAACGAGCAAATGCCGGGAGTGCGGTTTTA GGAATTATTATCAGCGTCATTACCGTGCTGGGCACACGCTATGCCACTGACCTTAACTTC TTCTTTTATGGGGTCATTGGCTCGCTAAGCGTGGTGATCAGCGGCGTTATTTTCGCCCCG TTATTTGCCCCGGCACCGCCATTGACGCTGGATGAAAAACCTGAACCAAAGGTGACATTA TGA >11111_1#11_04096 ATGATTACACATTCTTTCGGCATCGTTAATTATTTTGTATTATTTGGCTACCTCCTGGCC ATGATGTTAGTCGGTGTCTATTTTTCCAGACGGCAAAAAACAGCAGACGATTATTTTCGC GGTGGTGGCCGGGTTCCTGGTTGGGCGGCTGGGGTCAGTGTATTTGCTACTACGTTAAGC TCAATTACATTTATGTCAATTCCTGCCAAAGCGTTTACTTCCGACTGGACGTTTATCATT GGTCAGTATCTGGCTATCGCAATTTTACCGCTGGTTTTTTATTTCTATATTCCGTTTTTT CGGAAATTGAAAGTCACATCAGCCTATGAATATCTCGAAGCACGGTTCGATGTGCGCTGC CGTCTGTTCGCCAGCATGTCATTTATGTTGTTTCATATTGGACGTATCGCCATTATCACT TTCCTCACCGTGCTGGCCTTGCGCCCCTTCATCGCTATAGACCCGGTGATTTTGGTACTG TTGATTAGTGTGATGTGTATCATTTATACCTGGATGGGGGGGAATTGA >11111_1#11_04097 ATGTCACTATTAGCCAGGCTGGAACAAAGTGTACACGAAAACGGTGGGCTGATTGTCTCA TGCCAACCGGTACCAGGCAGCCCTATGGATAAACCTGAAATTGTGGCTGCAATGGCACAG GCAGCGGCTTCGGCGGGTGCGGTCGCTGTGCGCATTGAAGGCATTGAGAATCTGCGGACT GTTCGTCCCCATCTTTCTGTTCCTATTATTGGGATAATTAAACGTGACCTTACAGGGTCG CCAGTCCGTATCACTCCATATTTACAGGATGTTGACGCCCTGGCGCAGGCAGGTGCCGAT ATTATCGCTTTTGATGCCTCATTCCGCTCTCGCCCGGTTGATATTGATAGTTTACTGACA CGTATTCGCCTGCATGGATTACTGGCGATGGCAGACTGTTCAACCGTGAATGAAGGCATA AGTTGCCATCAGAAAGGAATCGAATTCATTGGTACAACACTGTCTGGCTATACCGGTCCC ATCACGCCGGTTGAGCCAGATTTGGCAATGGTGACACAACTGAGTCATGCAGGTTGTCGT GTTATTGCCGAGGGGCGCTATAACACGCCTGCACTGGCGGCCAATGCTATTGAGCATGGT GCCTGGGCAGTTACCGTTGGTTCCGCTATCACCCGTATCGAGCATATCTGTCAGTGGTTC AGTCACGCAGTAAAACGCTGA >11111_1#11_04098 ATGAAAAATTTTAAGAAAATGATGACGCTAATGGCGCTATGTTTATCAGTTGCTATCACC ACATCAGGATATGCAACCACGCTTCCTGATATACCAGAACCACTGAAAAATGGTACTGGC GCTATTGATAATAATGGCGTGATTTATGTCGGCTTAGGTACCGCAGGGACATCCTGGTAT AAAATTGATCTTAAAAAGCAACATAAAGACTGGGAGCGTATAAAGTCGTTTCCTGGTGGA GCTCGTGAGCAATCCGTGTCGGTATTTTTAAATGATAAGCTGTATGTTTTTGGTGGCGTA GGGAAAAAAAACAGTGAATCACCGTTGCAGGTTTATAGCGATGTGTACAAATACTCACCG GTGAAAAATACATGGCAAAAAGTTGATACTATATCTCCAGTTGGATTAACAGGGCATACG GGAGTAAAATTAAACGAAACGATGGTACTTATTACCGGAGGGGTTAATGAGCATATCTTT GATAAGTATTTTATTGATATAGCGGCTGCGGATGAAAGTGAAAAAAATAAAGTCATCTAT AATTATTTTAATAAACCTGCCAAAGATTATTTTTTTAATAAAATCGTATTTATCTACAAT GCTAAAGAGAACACATGGAAGAATGCCGGTGAGCTGCCAGGCGCGGGGACGGCAGGATCG TCATCGGTAATGGAAAATAATTTCTTGATGCTGATTAATGGTGAGCTCAAACCGGGTTTA CGTACCGATGTGATTTACCGCGCCATGTGGGATAACGATAAGCTAACATGGTTGAAGAAC AGCCAGTTACCGCCATCGCCTGGAGAACAACAGCAGGAAGGGTTGGCCGGAGCATTTTCG GGCTATAGCCACGGTGTCCTGCTTGTCGGTGGTGGCGCGAATTTTCCGGGAGCAAAACAA AATTATACTAATGGAAAGTTTTATTCCCACGAAGGGATAAATAAAAAATGGCGAGATGAA GTCTATGGTTTGATTAATGGCCATTGGCAATATATGGGTAAAATGAAACAACCTCTCGGC TATGGTGTATCAGTAAGTTATGGTGATGAAGTTTTCCTTATTGGTGGTGAAAATGCTAAA GGGAAACCTGTTTCGTCTGTAACCTCCTTTACCATGCGTGATGGTAATTTATTAATAAAA TAA >11111_1#11_04099 ATGAAAATCAACAGATATCTTCTGGGTATGGTTTCGTTTATAGCATTTTCATCATATCTA CAAGCGGCAACCCTTGATTATCGGCATGAATATGCTGATAGAACCAGAATTAATAAAGAC CGTATTGCTATAATTGAAAAGCTTCCTAACGGCATTGGTTTTTATGTCGATGCCAGCGTT AAATCGGGAGGAGTAGATGGTGAGCAGGATAAGCATTTAAGCGATCTCGTCGCAAACGCT ATAGAACTGGGCGTAAGTTATAATTATAAAGTTACGGACCATTTTGTTTTGCAGCCTGGA TTTATATTTGAAAGCGGTCCAGACACTTCAATTTATAAGCCTTATTTAAGGGCGCAATAT AATTTTGATTCTGGTGTTTATATGGCTGGTCGTTACCGTTATGACTATGCAAGGAAGACA GCTAACTATAATGATGATGAGAAAACGAATAGATTTGATACTTATATAGGTTATGTTTTT GATGAGTTGAAATTGGAATATAAATTTACCTGGATGGATAGCGATCAAATTAAATTTGAT AACAAAAAAACAAACTATGAACATAATGTGGCTTTAGCCTGGAAACTGAATAAGTCATTT ACACCATACGTTGAGGTCGGAAATGTAGCGGTGAGAAATAATACCGATGAGAGACAGACC CGTTATCGCGTTGGATTACAATACCACTTTTGA >11111_1#11_04100 GTGATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACACGTCCACAAAAAAATGCTTTA TTTTCAGCATGGCTGGGTTACGTTTTTGATGGCTTCGACTTTATGCTGATTTTCTACATT ATGTATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTTGCCACA GCGGCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGACAAATTT GGCCGTAAGCCGTTAATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGGTTAAGT GGCCTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGTTTTATTGTCGGTATGGGGATG GCGGGGAAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCATTTAAAA TCTAAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCAGCCTAT TTTATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGTTTGCTA CCCGTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGGGAAGAA GCCAAACTCAGTGGTCTCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCTTTGTCA ATGAAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATTGTTCTG TTCTCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTGGCGGGA GAGGGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGCACTGTA TTGGGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACGTTCAGC ATTGGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAAGATAAT TATTTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTTGGCGGG CTGGTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGTACCGGG CTTATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACCTGGCTT GGAATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACCGCAACA ATTCTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAAAGGTTT CAGTCAACAAAAGAATTTTAA >11111_1#11_04101 ATGACGAAATACGGTGTTATAGGTACAGGTTATTTTGGCGCTGAACTGGCGCGATTTATG TCTAAGGTTGAAGGGGCGAAAATCACTGCGATTTACGATCCGGTAAATGCGGCTCCGATA GCGAAAGAGCTGAACTGTGTCGCCACTTCAACGATGGAGGCGCTTTGTACCCATCCTGAT GTGGATTGCGTAATTATTGCTTCACCAAATTACTTACATAAAGCGCCGGTCATTGCGGCG GCTAAAGCGGGTAAACACGTGTTTTGTGAAAAACCTATCGCCTTAAATTACCAGGATTGT AAGGATATGGTTGATGCCTGCAAAGAAGCTGGTGTTACCTTTATGGCGGGTCACGTTATG AACTTTTTTCACGGGGTTCGCCACGCTAAAGCGCTCATCAAAGCCGGTGAAATCGGTGAA GTTACACAAGTTCACACTAAACGTAATGGTTTTGAAGACGTGCAGGATGAGATCTCATGG AAGAAGATTCGCGCAAAGTCAGGTGGGCATCTGTACCATCACATTCACGAGCTAGATTGT ACACTGTTCATCATGGATGAAACCCCATCCCTGGTTTCAATGGCGGCGGGGAATGTTGCG CACAAAGGTGAAAAATTTGGTGATGAAGATGATGTTGTCCTAATCACCCTTGAGTTTGAA AGCGGTCGTTTCGCGACACTTCAGTGGGGATCATCGTTCCACTACCCTGAGCACTATGTA TTAATTGAGGGCACGACAGGTGCAATTCTCATTGATATGCAAAACACGGCTGGTTATCTA ATAAAAGCGGGCAAAAAAACACACTTTCTTGTGCATGAAAGCCAGGCGGAGGATGATGAT CGTCGCAACGGTAACATATCCAGCGAGATGGATGGCGCAATCGCTTATGGTAAACCCGGT AAACGTACGCCGATGTGGCTCTCATCAATTATGAAACTGGAGATGCAGTACTTGCATGAT GTGATAAACGGTCTGGAGCCAGGCGAGGAGTTTGCTAAATTGCTAACGGGAGAAGCGGCG ACAAATGCCATTGCTACCGCTGATGCTGCGACGCTTTCTTCAAACGAGGGGCGCAAAGTT AAACTCACTGAAATTCTTGGCTAA >11111_1#11_04103 ATGGAGATAATTTTTTATCACCCGACATTTAACGCCGCCTGGTGGGTAAATGCGCTGGAG AAGGCTCTCCCACATGCGCGCGTTCGTGAATGGAAGGTCGGTGATAACAACCCCGCAGAC TATGCGCTTGTATGGCAGCCCCCGGTTGAAATGCTGGCCGGAAGACGCTTAAAAGCCGTC TTTGTGCTGGGCGCGGGGGTGGATGCAATTCTGAGTAAATTAAATGCGCATCCGGAAATG CTGGACGCCTCCATTCCTCTATTCCGTCTGGAAGATACCGGAATGGGCCTGCAAATGCAG GAGTATGCCGCCAGCCAGGTATTACACTGGTTCCGTCGTTTCGATGATTATCAGGCGCTG AAAAATCAGGCGCTATGGAAACCGTTGCCGGAATATACCCGCGAAGAGTTTAGCGTCGGT ATCATAGGCGCAGGGGTACTGGGCGCAAAAGTGGCAGAAAGTCTACAGGCGTGGGGGTTC CCGTTACGTTGCTGGAGTCGTAGCCGCAAATCCTGGCCTGGCGTGGAAAGTTATGTAGGG CGTGAAGAACTGCGCGCTTTCCTGAACCAGACGCGGGTGCTGATTAATCTGCTGCCGAAT ACGGCCCAAACGGTAGGAATTATTAATAGCGAATTGTTGGATCAATTGCCGGATGGCGCT TACGTGCTGAATCTCGCGCGCGGCGTTCATGTTCAGGAGGCGGATCTGCTGGCTGCGCTT GATAGCGGTAAGCTAAAAGGCGCGATGTTGGATGTCTTTAGCCAGGAACCGTTACCGCAG GAAAGTCCATTATGGCGCCATCCGCGAGTCGCCATGACGCCGCACATTGCGGCAGTCACC CGTCCGGCGGAAGCCATCGATTATATTAGCCGCACCATTACCCAGCTGGAGAAGGGAGAG CCGGTGACGGGGCAGGTGGATCGGGCGAGAGGATATTGA >11111_1#11_04104 ATGTATCCCGTTGACCTGCATATGCATACCGTCGCCAGCACTCATGCCTACAGTACTCTG AGCGATTATATCGCGGAAGCCAAACGCAAAGGCATTAAACTTTTTGCGATTACCGATCAT GGTCCGGACATGGAAGATGCGCCGCATCACTGGCATTTTATTAACATGCGCATCTGGCCG CGTCTGGTTGACGGCGTGGGGATACTGCGTGGCATTGAGGCGAATATCAAGAATATTAAC GGTGAAATTGATTGTTCCGGAAAGATGTTCGACTCGCTGGATCTGATTATCGCAGGCTTT CATGAGCCCGTTTTTGCGCCGCATGATAAAGAAACCAATACTCAGGCGATGATCGCGACC ATCGCCAGCGGCAAGGTGCATATAATTAGTCACCCCGGAAATCCAAAGTATCCAGTGGAG GTTAAAGCCATCGCGCAGGCGGCGGCGAAACACCATGTAGCGCTGGAAATCAACAACTCT TCTTTTCTGCATTCGCGTAAAGGAAGCGAAGATAATTGCCGCGCGGTCGCTGCCGCCGTA CGCGATGCGGGAGGCTGGGTAGCGTTAGGCTCTGATTCCCATACGGCCTTTACGCTTGGC GATTTCACCGAATGCCGGAAAATTCTGGATGCGGTGAATTTTCCGGAAGATCGAATCCTG AACGTCTCTCCGCAGCGCTTACTGGCCTTTCTCGAATCACGCGGTATGGCGCCTGTACCG GAATTTGCCGAACTTTAA >11111_1#11_04105 ATGAATGAGTTTTCAATCCTGTGCCGTGTGCTGGGATCGTTGTTTTACCGCCAACCGCAA GATCCTTTACTGGTTCCGCTGTTTACGTTAATCCGTGAAGGTAAACTGGCGGCAAACTGG CCGCTGGAGCAGGATGACATGCTGGCGCGTTTACAGAAAAGCTGCGATATCACGCAGATT TCCACTGATTACAATGCGTTATTTGTTGGGGAAGAGTGCGCGGTAGCGCCATACCGCAGT GCGTGGGTCGAAGGCGCGGAAGAGTCTGAGGTGCGCGCTTTTTTAACGTCGCGAGGGATG CCGCTGGCCGATACGCCTGCCGATCACATTGGCACTTTATTGCTCGCGGCCTCCTGGCTG GAAGATCAGTCTGCCGAAGATGAAAGTGAAGCGCTGGAAACCTTATTTGCCGATTATCTG CTTCCCTGGTGCAATACCTTCCTCGGTAAAGTTGAAGCCCATGCCGTTACGCCATTCTGG CGCACTCTGGCGCCGCTAACGCGTGATGCGATAGGGGCCATGTGGGATGAACTTCAGGAA GAAGATGAAGAATAA >11111_1#11_04106 ATGATGCGCGCCATGAACATACTTCTTTCTATTGCTATCACTACGGGCATCCTTTCTGGA ATATGGGGATGGGTGGCCGTCTCCCTGGGGTTACTAAGCTGGGCCGGTTTTTTAGGCTGT ACGGCTTATTTCGCCTGTCCGCAGGGCGGCTTTAAGGGATTGTTGATTTCCGCCTGTACG CTGTTAAGCGGTATGGTGTGGGCGCTGGTCATTATTCACGGTAGCGCGTTGGCGCCGCAT CTGGAAATTGTCAGTTACGTGTTGACGGGGATCGTGGCATTCCTGATGTGTATCCAGGCA AAGCAGCTATTGCTTTCTTTTGTTCCGGGAACATTTATCGGCGCCTGCGCGACATTTGCA GGGCAGGGTGACTGGCGGTTGGTATTACCGTCGCTGGCGCTGGGGCTAATCTTTGGCTAT GCCATGAAAAATAGTGGGCTATGGCTGGCATCACGCCGCGAGCAACATTCAGCGAATACG GCGGTCACAAAATAA >11111_1#11_04107 ATGCCGCGCTTACTTATTTTGGTTGCCGTTTTATTGTTGAGCGGATGCTTAACTGCCCCG CCGAAACAAGCTGCGAAACCGACATTAATGCCCCGCGCACAAAGTTACAAAGATTTGACG CACTTACCTGCTCCCACCGGTAAGATCTTTGTTTCGGTATATAACATTCAGGATGAAACG GGCCAATTTAAACCTTACCCGGCAAGTAACTTTTCCACGGCTGTGCCGCAGAGCGCCACC GCTATGTTGGTCACCGCGCTGAAAGATTCGCGCTGGTTTATCCCACTAGAACGACAAGGC TTACAGAATCTTTTGAATGAACGGAAAATTATTCGCGCAGCCCAGGAAAACGGCACCGTG GCGATGAATAACCGTATCCCGCTTCAGTCGTTGACGGCGGCAAATATTATGGTGGAAGGT TCTATTATTGGTTATGAAAGTAACGTCAAATCCGGCGGGGTCGGCGCAAGATATTTCGGT ATTGGCGCCGATACGCAGTATCAGCTGGATCAGATTGCTGTCAACCTGCGCGTGGTTAAC GTCAGTACGGGCGAGATCCTTTCTTCGGTGAACACCAGTAAAACGATCCTTTCCTATGAA GTACAGGCAGGCGTGTTCCGTTTTATTGATTACCAGCGCTTACTGGAAGGCGAAATCGGC TATACCTCGAACGAACCGGTGATGCTGTGTCTGATGTCAGCCATTGAAACCGGCGTTATC TTCCTCATTAATGATGGTATCGATCGCGGACTGTGGGATTTGCAGAATAAAGCGGACAGG CAAAATGATATTCTGGTGAAATACCGTGAGCTGTCAGTACCGCCAGAATCCTGA >11111_1#11_04108 ATGCGTGTTAAACATGCAGTAGTGCTGCTCATGCTTTTTTCGCCATTAACCTGGGCTGGA AATATGACGTTCCAGTTCCGTAATCCTAACTTTGGTGGAAACCCCAATAACGGTTCCTTT TTATTGAATAGCGCCCAGGCGCAAAATTCATATAAAGACCCCGCTTATGATAACGATTTT GGTATCGAGACCCCCTCAGCGTTGGATAACTTTACGCAGGCTATTCAATCGCAAATTCTG GGCGGCTTGTTGACCAATATTAATACCGGAAAACCAGGACGTATGGTGACCAATGATTTT ATTATCGATATCGCTAATCGCGACGGACAGCTCCAGCTCAACGTCACGGACAGAAAAACG GGAAGAACCTCGACCATCGAAGTGTCAGGTTTACAAACTCAGTCAACCGATTTTTAA >11111_1#11_04109 ATGAAACGCTATCTGACCTGGATTGTAGCAGCAGAGTTACTGTTCGCTACCGGAAACCTG CATGCCAATGAAGTTGAAGTCGAGGTTCCCGGATTGTTAACCGACCATACCGTCTCTTCG ATAGGACATGAATTCTATCGTGCATTCAGCGACAAATGGGAAAGCGAATACACCGGCAAT CTGACCATTAATGAAAGACCCAGTGCGCGTTGGGGAAGCTGGATCACCATAACGGTAAAT CAGGACGTTATTTTCCAGACCTTTTTATTTCCAATGAAAAGAGACTTCGAGAAAACCGTC GTCTTCGCATTAGCGCAAACAGAGGAAGCATTAAATCGCCGACAAATAGATCAAACGCTA TTAAGTACGAGTGATTTAGCGCGTGATGAATTCTAA >11111_1#11_04110 ATGTTTAATGAAGTCCATAGTAGTCATGGTCACACACTATTGTTGATCACAAAGCCATCT CTGCAAGCTACGGCATTATTGCAACATTTAAAGCAATCGCTGGCCATAACCGGAAAACTG CATAATATTCAACGTTCTCTGGAAGATATCTCAGCCGGTTGCATTGTTTTAATGGATATG ATGGAAGCGGATAAGAAGCTTATCCACTATTGGCAGGATAATTTAAGCCGCAAAAACAAT AATATAAAAACATTATTGTTAAATACCCCTGACGATTATCCCTACCGTGAAATTGAAAAC TGGCCTCATATTAACGGCGTGTTTTACGCCACTGAAGACCAGGAACACGTGGTCAGCGGA TTACAGGGTATTCTGCGGGGCGAATGCTATTTTTCACAAAAATTAGCCAGTTACCTGATT ACACACTCAGGAAATTACCGCTACAACAGCACCGAGTCCGCATTACTCACTCATCGCGAA AAAGAGATCCTCAATAAGTTACGTATTGGTGCCTCTAATAATGAAATCGCCAGGTCGCTA TTTATCAGCGAGAATACGGTTAAGACACATCTTTATAATCTTTTCAAAAAGATAGCTGTC AAAAATCGCACCCAGGCAGTTTCATGA >11111_1#11_04111 ATGAAAAACAAATTGTTATTTATGATGTTGACAATACTGGGTGCGCCTGGGATTGCAACC GCGACAAATTATGATCTGGCTCGTTCAGAGTATAATTTTGCGGTAAATGAATTAAGCAAG TCTTCATTTAATCAGGCGGCCATTATTGGTCAAGTCGGCACGGATAATAGTGCCAGAGTA CGCCAGGAAGGATCAAAACTATTGTCCGTTATTTCACAAGAAGGAGAAAATAATCGGGCG AAAGTCGACCAGGCAGGGAATTATAACTTTGCGTATATTGAGCAAACGGGCAATGCCAAC GATGCCAGTATATCGCAAAGCGCTTACGGTAATAGTGCGGCTATTATCCAGAAAGGTTCT GGAAATAAGGCCAATATTACCCAGTACGGTACGCAGAAAACAGCAGTTGTAGTGCAGAAA CAGTCGCATATGGCTATTCGCGTCACCCAACGCTAA >11111_1#11_04112 ATGAAACTTTTAAAAGTGGCAGCATTCGCAGCAATCGTAGTTTCTGGCAGTGCTCTGGCT GGCGTCGTTCCACAATGGGGCGGCGGCGGTAATCATAACGGCGGCGGCAATAGTTCCGGG CCGGATTCCACGTTGAGCATTTATCAGTACGGTTCCGCTAACGCTGCGCTTGCTCTGCAA AGCGATGCCCGTAAATCTGAAACGACCATTACCCAGAGCGGTTATGGTAACGGCGCCGAT GTAGGCCAGGGTGCGGATAACAGTACTATTGAACTGACTCAGAATGGTTTCAGAAACAAT GCCACCATCGACCAGTGGAACGCTAAAAACTCCGATATTACTGTCGGTCAATACGGCGGT AATAACGCCGCGCTGGTTAATCAGACCGCATCTGATTCCAGCGTAATGGTGCGTCAGGTT GGTTTTGGCAACAACGCCACGGCTAACCAGTATTAA >11111_1#11_04113 ATGCATACTTTATTGCTCCTTGCCGCACTTTCAAATCAGATTACGTTTACCACGACTCAG CAAGGCGATATTTACACGGTGATCCCTCAGGTCACATTAAACGAACCCTGCGTCTGTCTG GTGCAAATTCTCTCTGTGCGCGACGGCGTCGGGGGACAAAGCCATACACAGCAAAAACAA ACGCTATCTTTACCTGCTAATCAACCGATTGAGTTGTCTCGTCTTAGTGTAAATATATCT TCAGAGGACTCGGTTAAAATTATTGTTACTGTTTCGGACGGACAATCACTGCATTTATCA CAACAATGGCCGCCTTCTGCACAGTAG >11111_1#11_04114 ATGTCCGTAATCAAGAAAAATATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATC CATTCTGCGGTAGGGCAACAAACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATT GTTGAGCCACTGTGCGATATTTCTACTCACGCCGAAAATATTGATTTAACCTGCCTACGC GAAGGTAAAAAGCAAATGCACCGGATAGACCTTCGGCAGGCATCTGGATTACCGCAGGAT ATTCAGTCCATTGCGACGGTACGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTG ATGAATATTGAGTACCGTTAA >11111_1#11_04115 ATGACATCACGTCTTCAGGTCATACAGGGTGATATCACTCAACTTAGCGTCGATGCGATT GTGAATGCCGCTAACGCATCATTAATGGGCGGCGGTGGCGTAGACGGCGCAATTCATCGC GCGGCGGGGCCGGCATTGCTGGACGCCTGTAAACTCATCCGTCAGCAACAGGGCGAATGT CAGACGGGACATGCGGTTATCACGCCTGCTGGCAAGCTTTCGGCAAAGGCGGTTATTCAC ACAGTGGGGCCCGTCTGGCGAGGCGGCGAACACCAGGAAGCTGAGCTACTCGAAGAGGCA TACCGGAATTGTTTGCTGCTTGCCGAGGCGAATCACTTTCGTTCCATCGCTTTTCCGGCA ATCAGTACCGGCGTTTATGGCTATCCACGCGCCCAGGCCGCTGAAGTCGCCGTCAGGACG GTTTCAGATTTTATTACCCGTTACGCTCTGCCTGAACAGGTATACTTTGTCTGTTATGAT GAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAGGCGACGACCCTGCCTGA >11111_1#11_04116 ATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAGGCGACGACCCTGCCT GATAAAACACGCCTGGAGCGTGCCGTTGAACCGCTATGCGCGCGCCATCCCGGAGAGTGC GGCATTCTTGCGCTGGATAACAGTCTGGACGCTTTTGCCGCCCGCTACCGCCTGACCGAA ATGGCGGCGCGGACGCTGGATGTGCAGTATTATATTTGGGAAGACGATATGTCCGGGCGG CTGCTCTTTTCGGTTCTGCTGTCGGCGGCGAAGCGCGGCGTTCATGTTCGTCTGCTGCTG GATGATAACAATACGCCTGGTCTGGATGATACGTTGCGCTTGCTGGATAGCCATCCTAAT ATCGAAGTTCGTCTGTTTAATCCTTTCTCTTTTCGTACGCTACGCGCGCTGGGATATTTG ACGGATTTTGCGCGGCTGAATCGGCGGATGCACAATAAAAGTTACACTGCCGACGGCGTA GTGACGCTGGTCGGTGGGCGCAACATCGGCGATGCCTATTTCGGCGCTGGCGAGGAGCCG CTATTTTCCGATCTGGACGTGATGGCCATTGGCCCGGTGGTCAATGATGTCGCCAATGAT TTTGAACGTTACTGGCGCTGTAGTTCAGTGTCGACATTGCAGCAAGTATTATCCCTTTCT GAGCAGGAACTGACGCAGCGTATCGAACTTCCCGAATCCTGGTATAACGATGAGATCACC CGCCGTTATCTGCATAAGCTGGAAACCAGCCAGTTTATGGCGGATCTCGATCGCGGAACG TTGCCGCTGATTTGGGCAAAAACACGCTTGCTTAGCGATGACCCTTCTAAAGGCGAGGGG AAGGCGCAGCGCCATTCGCTTCTTCCGCAGCGATTATTTGACGTGATGGGGTCGCCGACG GAGCGTATCGACATTATTTCCGCTTACTTTGTCCCTACGCGCGCAGGCGTGGCGCAGTTG CTTAATCTGGTCAGGAAAGGTGTGAAGATCGCCATCTTAACTAACTCTCTGGCGGCCAAC GATGTGGCGGTCGTTCACGCAGGGTACGCGCGCTGGCGCAAGAAATTACTGCGCTATGGC GTGGAGCTCTACGAACTGAAACCGACCCGCGAACATGAAACCGCCGTACATGATCGCGGA CTCACCGGGAACTCAGGTTCCAGCTTACATGCTAAAACGTTCAGTATTGATGGTAGTAAG GTGTTTATCGGGTCGCTTAATTTTGATCCCCGTTCAACGCTTTTAAATACCGAAATGGGC TTTGTCATTGAAAGTGAAACGCTGGCGACGCTTATTCATAAGCGTTTTACGCAGAGCCAA CGCGATGCGGCCTGGCAACTGCGGCTGGATCGCTGGGGACGAATTAACTGGATCGATCGT CAGCAAGAAGAGGAAAAGGTGTTAAAGAAAGAACCCGCTACGCGTTTCTGGCAGCGAGTT CTGGTACGGTTGGCGGCAATTTTACCTGTGGAATGGTTGCTGTGA >11111_1#11_04117 ATGAGCTCTGTACCCGCGCCGCGTGAATATTTTCTTGACTCTATCCGCGCATGGCTGATG TTGTTAGGGATTCCCTTTCATATCTCGTTGATCTATTCCACTCACAGTTGGCATGTCAAT AGCGCCGCGCCATCGTGGTGGCTAACCCTGTTTAACGATTTTATCCACGCTTTTCGTATG CAGGTGTTTTTTGTTATTTCTGGTTATTTTTCGTACATGTTATTTTTACGTTATCCATTA AAACACTGGTGGAAAGTACGGGTAGAACGTGTGGGTATTCCCATGCTTACCGCAATCCCT TTGCTTACCTTGCCGCAATTTATCCTGTTGCAATATGTCAAAGAGAAAACAGAGAACTGG CCTACACTCTCTGCCTATGAAAAATATAATACGTTAGCGTGGGAACTCATTTCACATCTG TGGTTTTTACTGGTGCTGGTGATATTAACCACCGTCAGCATCGGGATTTTTACCTGGTTC CAAAAAAGGCAGGAAACAAGCAAGCCTCGTCCCGCCGCTATTTCGCTGGCCAAACTTTCG CTTATTTTTTTCCTGCTGGGGGTGGCGTACGCTGCTATCAGGCGCATTATATTCATCGTA TATCCGGCAATCCTCAGTGACGGCATGTTCAATTTTATTGTGATGCAAACGCTATTTTAT GTGCCGTTTTTTATTCTCGGCGCGTTGGCCTTCATTCACCCCGATCTGAAAGCGCGCTTC ACCACGCCCTCACGCGGATGCACTTTAGGCGCTGCCGTTGCTTTTATCGCGTATCTGCTG AATCAACGTTATGGGAGCGGCGACGCCTGGATGTACGAAACCGAATCCGTGATTACGATG GTAATGGGGCTATGGATGGTGAACGTGGTATTTTCACTGGGGCATCGCTTGTTAAACTTT CAGTCCGCGCGTGTCACCTATTTCGTGAATGCTTCGCTGTTTATTTATCTGGTGCATCAT CCCTTAACGCTTTTCTTTGGCGCGTATATTACACCGCATATCTCCTCCAACCTGATCGGG TTCTTGTGCGGGCTGATATTTGTTATGGGTATTGCGTTAATTCTGTATGAAATTCATTTA CGCATCCCGCTCCTGAAATTTCTCTTTTCAGGTAAACCGCCGGTAAAACAAGAAAGCCGC GCCGCGATCGGGTAG >11111_1#11_04118 ATGAAACATAAACGACAAATGATGAAAATGCGTTGGTTGGGCGCAGCTATTATGTTAACG CTCTACGCATCATCGAGCTGGGCGTTCAGTATTGATGACGTGGCAAAACAAGCTCAATCT TTAGCCGGGAAAGGCTATGAGGCGCCTAAAAGCAACTTGCCCTCCGTTTTCCGCGACATG AAATATGCGGATTATCAGCAGATCCAGTTTAACAGCGATAAAGCCTACTGGAACAACTTA AAGACCCCTTTTAAGCTCGAATTTTACCATCAGGGGATGTACTTCGATACGCCGGTCAAG ATTAACGAAGTGACGGCGACGACGGTCAAAAGAATCAAATACAGCCCGGATTACTTCAAT TTTGGCAATGTTCAGCACGATAAAGACACGGTAAAAGATTTAGGCTTCGCCGGGTTCAAA GTCCTGTACCCCATTAACAGTAAAGATAAGAACGACGAAATCGTCAGTATGCTTGGCGCC AGCTATTTCCGCGTTATCGGCGCAGGCCAGGTGTATGGCTTATCTGCGCGCGGCCTGGCG ATTGATACCGCCTTACCATCTGGTGAAGAGTTTCCCCGCTTTCGCGAGTTCTGGATTGAG CGTCCAAAACCCACCGATAAGCGTTTGACCGTCTATGCATTACTGGATTCTCCGCGCGCG ACCGGCGCTTACCGTTTTGTGATCATTCCTGGCCGCGATACCGTGGTGGACGTGCAGTCA AAAGTCTATCTGCGCGATAAGGTGGGCAAGCTGGGCGTTGCGCCATTAACCAGTATGTTC CTGTTTGGGCCAAACCAGCCGTCGCCGACGACCAACTATCGTCCGGAATTGCATGACTCG AACGGCTTATCCATTCATGCGGGTAATGGCGAGTGGATTTGGCGTCCGCTGAACAATCCA AAACACCTCGCTGTGAGCAGCTATGCGATGGAAAACCCTCAGGGATTCGGCCTGTTGCAG CGTGGTCGCGAGTTCTCGCGCTTTGAAGATTTAGACGATCGCTATGACCTGCGTCCAAGC GCCTGGATTACCCCGAAAGGCGACTGGGGCAAAGGTAAGGTTGAACTGGTTGAAATTCCG ACCAATGATGAAACCAACGATAACATCGTCGCTTACTGGACTCCGGATCAACTGCCGGAA CCGGGTAAAGAGATGAACTTCAAGTACACTCTGACCTTCAGCCGCGATGAAGATAAACTT CATGCGCCGGATAATGCCTGGGTGCTGCAAACACGCCGCTCAACGGGCGACGTTAAACAG TCGAATCTGATTCGCCAGCCCGACGGCACTATTGCCTTTGTGGTGGATTTCGTTGGCGCC GACATGAAAAAACTGCCGCCGGATACGCCCGTCGCTGCACAAACCAGCATTGGCGATAAC GGTGAAATCGTTGACAGTAATGTACGCTATAACCCAGTCACTAAAGGCTGGCGTTTAATG CTGCGCGTGAAAGTCAAAGACGCGAAGAAAACCACGGAAATGCGTGCCGCATTGGTGAAT GCCGATCAGACGCTAAGTGAAACCTGGAGCTACCAGTTACCTGCCAATGAATAA >11111_1#11_04119 ATGAATAAAACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCA TTGCCGAAAACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTAC TCGCGAGAAGACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCG GATTCATTGGCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCT ATGCCAAAAGCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGC CGTTTCTGGGATCGCCTGCGTGGGCGGGATGTAACGCCGCGCTATGTTTCTCGTCTGACA AAAGAAGAGCAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATT TTGTTAATTTTGACTCTGGCGCAAACCGTCGTCGCGACCTGGTATATGAAGACCATTCTG CCCTATCAGGGATGGGCGCTCATCAATCCTATGGATATGGTGGGGCAGGATATTTGGGTC TCCTTTATGCAGCTCCTGCCCTACATGCTGCAAACCGGTATCCTGATTTTGTTTGCCGTG CTGTTCTGCTGGGTGTCTGCCGGATTCTGGACGGCGCTGATGGGCTTCCTGCAACTGCTT ATCGGGCGCGATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCG GAACACCAGACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCC GGTCTGCGCGCGACCTGGGAGTCCGTTAAAGCCACAGGCAACGCCGCGCATTTTGACGTC TATATCCTTAGCGATAGTTATAACCCGGATATCTGCGTGGCGGAGCAAAAGGCGTGGATG GAGCTCATCGCGGAAGTGCAGGGCGAAGGCCAAATTTTTTACCGTCGCCGCCGCCGCCGT ATGAAACGCAAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGC TATATGGTGGTGCTGGACGCGGACTCAGTGATGAGCGGCGAGTGTCTGAGCGGGCTGGTG CGCCTGATGGAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGG ATGGATACTCTGTATGCCCGCTGCCAACAGTTCGCGACCCGTGTTTATGGACCGCTGTTT ACCGCCGGGCTGCACTTCTGGCAGTTGGGGGAGTCGCACTACTGGGGGCACAATGCCATT ATCCGCGTGAAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCG TTCGCCGGATCGATTCTTTCCCACGACTTTGTGGAGGCGGCGCTAATGCGTCGGGCAGGG TGGGGCGTCTGGATTGCCTACGATCTCCCCGGCTCCTATGAAGAGCTGCCGCCAAACCTG CTGGATGAGCTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTG TTCCTGGTGAAAGGAATGCACCCGGTGCATCGCGCCGTGTTCCTGACCGGGGTAATGTCA TACCTGTCCGCGCCGTTATGGTTTATGTTCCTCGCGCTTTCTACCGCGCTGCAGGTCGTT CATGCGTTAACAGAGCCGCAATATTTCCTTCAGCCGCGCCAGCTTTTTCCGGTCTGGCCG CAGTGGCGTCCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTG CCGAAGCTGCTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTC TGGCGCGTTACGCTGTCGCTATTGCTGGAAGTGCTGTTCTCCGTGTTGCTGGCGCCGGTG CGTATGCTGTTTCATACCGTGTTTGTGGTCAGCGCGTTCCTCGGCTGGGAAGTGGTCTGG AACTCACCGCAACGCGACGATGATTCTACGCCGTGGGGAGAAGCCTTTATGCGTCACGGC TCTCAACTGCTGCTGGGGCTGGTCTGGGCGGTGGGTATGGCGTGGCTGGATTTACGCTTT CTGTTCTGGCTGGCGCCGATTGTCTTTTCGCTGATTCTGTCGCCATTTGTTTCGGTGATC TCCAGTCGTTCAACGGTAGGATTACGCACCAAACGCTGGAAGCTGTTCCTGATCCCGGAA GAGTATTCGCCGCCTCAGGTGTTGGTCGATACCGATAAATATCTGGAGATGAATCGCCGC CGTATTCTGGACGATGGCTTTATGCATGCGGTATTTAACCCGTCGCTTAATGCGCTGGCG ACCGCGATGGCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGT CATGTGGAGCAGGCGCTAAACGAAACGCCGGAGAAACTGAACCGCGATCGGCGTCTGGTT TTGCTCAGCGATCCGGTGACGATGGCGCGTTTACACTATCGGGTCTGGAATGCGCCAGAG AGATACTCTTCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAG GGACGAACATCGTCAGCGGGATAA >11111_1#11_04120 GTGCGTATATTCGCGGTGAGCATAATGGTGATTACCCTGAGCGGCTGCGGCAGTATTATC AGCAGAACGATCCCCGGACAAGGACACGGCAACCAGTATTACCCTGGCGTGCAGTGGGAT ATGCGTGATTCCGCATGGCGCTATATCACTATCCTCGATCTGCCCTTCTCACTGATCTTC GATACACTGCTACTGCCGCTCGATATTCACCACGGGCCTTATGAGTAA >11111_1#11_04121 ATGACCATGTATGCCACGCTGGAAGAAGCTATCGATGCAGCCCGGGAAGAATTTCTGGCT GACCATCCAGGCCTCGAACAAGACGAAGCGAATGTGCAGCAGTTCAACGTTCAGAAATAT GTACTGCAGGATGGGGACATCATGTGGCAGGTCGAATTTTTCGCCGATGAAGGTGAAGAT GGCGAATGTCTGCCGATGCTGAGTGGTGAAGCCGCACAGAGCGTGTTTGACGGCGATTAT GATGAGATAGAGATCCGCCAGGAATGGCAGGAAGAGAATACTTTGCATGAATGGGATGAA GGGGAATTCCAGCTTGAACCCCCGCTTGATACCGAGGAAGGCCGTACTGCGGCAGACGAA TGGGATGAGCGTTAA >11111_1#11_04122 ATGTCACCCTCTGATGTCCCCATAAACTGGAAACGCAATCTAACCGTTACCTGGCTGGGC TGTTTTTTAACCGGCGCGGCATTCAGTCTGGTCATGCCTTTTCTCCCTCTCTACGTTGAG CAACTCGGCGTAACAGGCCATAGCGCGCTCAACATGTGGTCCGGGCTGGTCTTTAGTATT ACGTTCCTCTTTTCAGCTATCGCTTCCCCTTTTTGGGGCGGTCTGGCGGATCGTAAAGGG CGTAAGATCATACTGTTGCGTTCCGCTCTCGGCATGGCCATTGTGATGCTGTTAATGGGC ATGGCGCAAAATATCTGGCAATTTCTGATCCTCCGCGCGTTATTAGGCCTGCTGGGCGGA TTTATTCCCAACGCCAATGCGCTCATCGCCACTCAGGTGCCGCGCCACAAAAGCGGCTGG GCGTTAGGGACGCTCTCTACTGGCGGCGTCAGCGGCGCTCTGCTTGGCCCACTTGCGGGC GGTCTGCTCGCCGACCATTACGGCCTTCGCCCGGTCTTTTTTATTACCGCCAGCGTTTTG TTTATCTGTTTTCTGCTCACCTTCTTTTTTATTCGCGAGAATTTCCTGCCGGTGAGCAAA AAAGAGATGCTTCACGTTCGGGAAGTGGTCGCCTCGTTAAAAAATCCCCGCCTGGTGTTA AGCCTGTTTGTCACCACGCTGATTATTCAGGTGGCGACGGGGTCTATTGCGCCCATCCTG ACGCTCTATGTGCGCGAACTCGCGGGAAATGTCAGTAATATTGCGTTCATTAGCGGGATG ATAGCGTCCGTTCCCGGCGTGGCGGCATTACTTAGCGCCCCCCGGCTCGGCAAGCTCGGC GACAGAATTGGCCCGGAAAAGATCCTTATCGTCGCGCTGATTATTTCCGTACTGCTGCTG ATTCCAATGTCTTTTGTGCAAACGCCGTGGCAGCTCGCGCTATTGCGGTTTCTGCTTGGC GCGGCGGATGGCGCGCTGCTGCCAGCCGTTCAAACTCTGCTGGTTTACAACTCTACCAAC CAGATAGCCGGGCGCATATTCAGTTACAACCAATCTTTCCGCGATATCGGCAACGTCACC GGCCCTCTCATGGGTGCCGCAATTTCCGCGAGCTATGGCTTCCGCGCCGTATTCTGCGTC ACGGCAGGCGTGGTGTTGTTCAATGCTATCTATTCATGGAACAGCTTACGACGGCGCAGA CTGGCAATAGAATGA >11111_1#11_04123 ATGACGAAGTTGCCTAAGTTCTCCGTGGCCTTACTGCACCCGCGCTATTGGTTAACCTGG TTGGGTATAGGCGCGCTTTGGTTGGTCGTGCAACTCCCCTACCCGGTCATCTATAAATTG GGTTGCGCATTGGGCCACCTGGCGCGACGCGTAATGAAACGCCGCGCGAAAATCGCCTAT CGCAACCTTGAATTATGCTTTCCGGAAATGAGCGCGCAGGAACGCCACACCATGGTGGTC AAAAACTTTGAATCCGTCGGTATGGGCGTGATGGAAACCGGCATGGCCTGGTTCTGGCCC GATCGGCGAGTGAACCGCTGGATGGAAGCGAGCGGTCTGGAGCATATCCGTGAAGTTAAG GCGCAGGGGCTGGGGTTCATTCTGGTAGGAATACATTTCCTTACCCTTGAGTTTGGCGCC CGCATGTTTGGTATGCATAACCCGGGTATCGGCGTTTATCGCCCGAATGATAATCCGTTG CTCGACTGGTTACAGACCTGGGGGCGCTTACGCTCCAATAAATCGATGTTGGATCGCAAA GATCTGAAAGGTATGGTTAAGGCATTGAAAAGCGGCGAATTGATCTGGTATGCGCCGGAT CACGATTATGGCCCGCGCGCCAGCGTCTTTGTACCGTTATTCGCCGTCGACCAGGCCGCT ACGACCTCCGGTACCTGGATGCTCGCGCGCATGTCTAAAGCCTGTATTATCCCCTCCGTG CCTCGCCGTAAACCCGACGGGAAAGGCTACGAACTGATCATCCTTCCTGCGGAATATTCG CCTCCGCTGGAGAGCGCAGAAGCGACTGCCGCATGGATGAATAAGATTGTTGAGCAGTGC ATTATGATGGCGCCAGAGCAGTATATGTGGCTGCATCGCCGCTTTAAAACTCGCCCTGAA GGCGTACCGTCGCGCTATTGA >11111_1#11_04124 ATGCCAGTGTTACACAACCGCATCTCTAATGACGAGCTGAAAGCCAAAATGCTGGCGGAA AGCGAGCCGCGTACGACAATTTCTTTTTATAAATATTTCACTATCGCCTCGCCGCAACAG ACGCGGGACGCGTTGTATCAGGTGTTTACGGCGTTGGACGTTTTTGGTCGCGTTTACCTG GCGCATGAGGGCATCAATGCGCAAATCAGCGTGCCGCAAAGCAAGGTTGAGACCTTTCGT CAACAGCTTTATACGTTCGACCCCGCGCTGGACGGGGTGCGTTTAAATATCGCGCTGGAG GATGACGGAAAGTCATTTTGGGTGCTGCGTATGAAAGTTCGCGACCGTATCGTCGCTGAC GGTATTGACGATCCGAGTTTTGACGCCAGTAATGTCGGCGATTATCTGAAGGCGGCAGAT GTGAATGCGATGCTGGACGATCCTGACGCGGTCTTTATTGATATGCGCAACCACTATGAG TATGAAGTCGGCCATTTCGAAAATGCTCTGGAAATCCCGGCGGATACGTTTCGTGAACAG TTGCCAAAAGCGGTTGAAATGCTGCGGGAACATGCAGATAAAAAGATAGTGATGTACTGT ACCGGCGGTATTCGTTGTGAGAAAGCCAGCGCCTGGATGAAACACAACGGTTTCAATAAA GTCTGGCATATTGAGGGTGGCATCATTGAGTACGCCCGTCGCGCGCGCGAGCAGGGGCTT CCCGTTCGCTTTATCGGCAAAAACTTTGTATTTGATGAGCGAATGGGCGAGCGCATCTCG GATGAGGTTATCGCGCATTGCCATCAGTGCGGCGTGTCCTGCGATAGCCATACCAACTGC AAAAACGACGGTTGCCATCTGCTGTTTATCCAGTGTCCGCAGTGCGCCAGTAAATTTAAC GGCTGCTGTAGTGAACAATGCTGTGAAGAGTTGGCCTTGCCGGAGGAAGAACAGCGCCGA CGTCGCGCGGGTCGTGAGAACGGCAACAAAATTTTTAATAAATCGCGGGGTCGGCTTAAT AGCAAACTGAGCATTCCCGATCCGGCTGAGTAA >11111_1#11_04125 ATGAAAAAAAACCTGCTGGGATTCACCCTCGCATCCTTGTTATTCACGACCGGTTCCGCC GTGGCGGCGGAGTATAAAATTGATAAAGAAGGCCAACATGCGTTCGTCAATTTCCGCATC CAGCATCTGGGCTACAGCTGGCTATACGGCACCTTTAAAGATTTCGACGGCACGTTCACT TTTGACGAAAAAAATCCGTCAGCAGACAAAGTGAATGTGACCATTAACACCAATAGCGTC GACACTAACCATGCCGAACGTGACAAACACCTGCGTAGCGCGGAGTTTCTTAATGTTGCG AAATTCCCGCAGGCAACCTTCACCTCTACCAGCGTGAAAAAAGAGGGCGATGAACTGGAT ATTACCGGCAATCTGACGCTCAATGGCGTGACTAAACCGGTGACGCTGGAAGCGAAGCTG ATGGGCCAGGGCGACGATCCGTGGGGCGGTAAGCGCGCGGGCTTTGAGGCCGAAGGAAAA ATTAAGCTGAAAGATTTCAATATAACTACCGATCTCGGCCCAGCCTCACAAGAGGTGGAG CTTATCATCTCAGTAGAAGGCGTTCAGCAGAAGTAA >11111_1#11_04126 ATGTTACTGATGATGGCGCTGATCGTGCGTATTATCTGGCGGCTTTATTCTCCGCCGCCC GTTGCGTTGACCAGCTATTCCCGTTTAACGCGCATTGGCGCCGCCGCGGGTCATATCCTT CTGTATCTCCTGCTCTTTGCGATAATCATTAGCGGCTACCTGATTTCCACCGCCGACGGT AAACCGATTAGCGTCTTTGGCTGGTTTGAGATTCCGGCCACGCTTACGGACGCGGGCGCG CAGGCTGACATCGCCGGAACACTGCATCTGTGGTTTGCCTGGTCGCTGGTCATTATCTCG CTCTCGCATGGGGTTATGGCGCTAAAACACCATTTCATCGATAAAGACGACACACTGAAA CGTATGACAGGAATGTCGTCATCTGACTATGGAGCTCAAAAATGA >11111_1#11_04128 ATGAAATACGACCTTATTATTATCGGCAGCGGTTCGGTTGGCGCCGCCGCTGGTTATTAC GCCACCCGCGCCGGGCTAAAGGTCCTGATGACCGATGCGCATATGCCGCCTTATCAACAG GGCAGCCACCACGGCGATACCCGTCTTATCCGCCACGCTTATGGTGAAGGCGAAAAATAT GTCCCGCTGGTGCTTCGCGCCCAGACGCTTTGGGATGAGCTCTCCACACACAATGAAGAG CCTATTTTTGTCCGCTCCGGCGTCGTCAACCTCGGCCCGGCCGATTCCGCTTTCTTAGCC AACGTCGCACGAAGCGCGCAACAGTGGCAATTGAACGTCGAGCGCCTGGACGCGACGGCC CTCATGACGCGCTGGCCGGAAATTCGCGTGCCCGATAATTATATCGGGCTGTTTGAAGCT GACTCCGGTTTCCTGCGCAGCGAATTAGCCATTACCACATGGCTTCGTCTGGCCCGAGAG GCAGGCTGCGCACAGCTATTCAACAGCCCGGTAAGCCATATTCACCATGATGATAACGGT GTGACGATAGAGACGAGTGAAGGCTGCTACCACGCCAGCAAAGCGCTGATTAGCGCGGGC ACCTGGGTCAAAACGCTGGTACCGGAGCTGCCCGTTCAGCCCGTACGTAAAGTTTTTGCC TGGTTTAAGGCGGATGGACGTTACAGCACTAAAAACCGCTTTCCGGCCTTTACCGGCGAA ATGCCCAACGGCGATCACTATTACGGTTTCCCGGCGGAGAACGACGAGTTAAAAATCGGC AAACACAATGGCGGGCAGCGAATACAGGCACCGGAAGAGCGCAAGCCCTTTGCCGCCGTT GCCAGCGATGGCGCGGAAGCATTTCCTTTCCTGCGTAACGTACTGCCGGGTATCGGCGGT TGTTTACATGGGGCGGCATGTACCTATGATAATTCGCCGGACGAGGATTTTATTATCGAT ACGCTGCCTGGCCATGAGAATACGCTTGTCATCACTGGACTCAGCGGACATGGTTTTAAA TTCGCCCCGGTGTTAGGAGAAATCGCTGCGGATTTTGCGTTGGGAAAAACGCCCTCCTTT GATCTGACGCCGTTCCGGCTTTCCCGTTTTAGCCAATAA >11111_1#11_04129 ATGGAAAAGAATAATGAAGTCATTCAGACCCATCCGCTTGTAGGATGGGACATCAGCACC GTCGATAGCTATGATGCGCTGATGCTGCGTTTACACTACCAGACCCCAAATCGTCCGGAA CCGGAAGGGACTGAAGTTGGTCAAACGCTCTGGTTAACGACAGATGTAGCCAGGCAATTT ATTTCAATATTAGAAGCCGGCATCGCCAAAATAGAATCAGGCGATTACCAGGAAAACGAG TATCGTCACCATTAG >11111_1#11_04131 ATGACTGCACCATCCCAGGTTTTAAAGATCCGCCGCCCGGACGACTGGCACGTTCACCTT CGCGATGGCGACATGTTAAAAACGGTCGTACCCTATACCAGCGAAATTTATGGTCGCGCT ATCGTGATGCCGAACCTGGCGTCCCCCATTACGACCGTTGATGCAGCGATCGCCTACCGC CAGCGTATTCTCGATGCGGTGCCCGCCGGGCATGATTTCACGCCGTTAATGACCTGCTAT TTAACGGATTCGCTCGATGCCGATGAACTGGAGCGTGGTTTCCATGAAGGCGTGTTTACT GCGGCCAAGCTTTACCCGGCCAATGCCACCACTAACTCCAGTCATGGCGTAACGTCAGTC GACGCTATCATGCCGGTACTGGAGCGGATGGAAAAACTCGGAATGCCATTGCTGGTCCAC GGTGAGGTGACCCATGCGGATGTTGATATCTTCGATCGCGAAGCGCGTTTTATCGACACC GTAATGGAACCGCTACGCCAGCGTCTGACCGCGCTTAAAGTGGTCTTTGAACACATCACA ACCAAAGATGCCGCGCAGTATGTACGTGACGGCAGCTACAACCTGGCGGCGACCATTACG CCTCAACATTTAATGTTTAACCGTAATGATATGCTGGTTGGCGGCATTCGTCCTCACCTG TACTGTCTGCCGATTCTGAAACGCAATATTCACCAGCAGGCGTTACGCGACCTGGTCGCC AGTGGTTTTACGCGCGCCTTCCTGGGGACGGATTCAGCGCCGCATTCACGTCATCGTAAA GAGACCCGTTGCGGCTGCGCCGGTTGTTTCAACGCCCCCTCCGCTCTTGGCAGTTATGCC GCCGTGTTTGAGGAAATGAACGCGCTGGCGCACTTTGAAGCGTTCTGTTCACTGAATGGC CCGCAATTCTATGGCCTGCCGGTGAATACGGGGTGGGTGGAACTGGTTCGCGATGAACAA CAGATACCGGAAAATATCGCGCTGGCTGATGATTCGCTGGTGCCTTTTTTAGCGGGTGAA ACAGTACGCTGGTCAGTAAAAAAATAA >11111_1#11_04132 ATGTCCGCTGGCGCGACATGCTGCTTTGTGTCAAGATTAGGGCACAGGCAACATGCTAAG GAACGCCATGAAAAAGTTTTTTTTGCCGCTGCGCTGGTAGTTAGCGGCCTGTTAGTGGGT TGTAATCAACTTACGCAATACACCATTAGCGAACAAGAAATCAATCAAGCGCTTGAAAAA CGGAATAATTTCTCAAAAGATATTGGTCTGCCTGGCATTGCCGACGCGCATATCGTATTG ACTAACCTTGCCAGCCAGATTGGTCGGGAAGAGCCTAATAAAGTCACCCTTACTGGCGAT GCCAGGCTGGATATGAATTCCCTGTTTGGCAGTCAAAAAGCGACGATGAAACTCAAGCTA AAAGCCCTGCCGGTCTTTGATAAAGAAAAAGGCGCCATCTATCTTCAGGAGATGGAAGTA GTAGACGCCACCGTGACGCCGGAGAAAATGCAATCAGTGCTACAAACGCTCCTGCCCTAT TTAAATCAGTCTTTACGTAGCTACTTTAACCAGCGGCCCGCTTACGTGTTGCGTGAGGAC AGTAGTAAAGGCGAAGCGTTAGCGAAGAAACTCGCGAAAGGCATTGAAGTTAAACCTGGT GAAATCGTTATTCCTTTCACCAATTGA >11111_1#11_04133 GTGAAGCTTTATATTTACGATCATTGCCCTTTCTGCGTTAAAGCCCGCATGATTTTCGGC CTGAAGAACATCCCCGTTGAACTTAACGTGTTACAAAATGACGACGAGGCGACGCCCACC CGGATGATTGGTCAAAAGATGGTGCCCATCCTGCAAAAAGATGATAGTCGCTACCTTCCT GAAAGTATGGATATTGTACATTATGTCGACAACCTCGACGGCAAACCGCTGTTAACCGGG AAACGTAATCCAGCCATTGAAGAGTGGTTGCGCAAAGTTAACGGTTACGTTAATCAGCTA CTGCTGCCGCGATTTGCAAAATCCGCTTTCGATGAATTTTCTACCCCTGCGGCGCGCCAG TATTTTATCCGCAAAAAAGAGGCCTCATCTGGCAGTTTTGACAACCATCTTGCGCACTCT GCCGGACTGATTAAAAAGATCGGCGATGATTTACGTTTGCTGGATAAACTCATCGTACAG CCTAACGCCGTTAACGGCGAATTATCGGAAGATGATATTCATCTGTTTCCGCTTCTGCGT AATCTGACGCTGGTCGCCGGTATTCACTGGCCGACAAAAGTCGCGGACTATCGCGATAAT ATGGCTAAGCAGACGCAAATTAATTTACTCTCCTCAATGGCTATCTAA >11111_1#11_04134 ATGTCGCGCGTCTCGCAGGCGAGGAACCTGGGTAAATATTTTCTTCTCATCGATAACATG TTAGTGGTGCTGGGTTTTTTCGTCGTCTTCCCGCTCATCTCTATTCGCTTTGTCGATCAA ATGGGGTGGGCTGCCGTAATGGTAGGGATCGCGCTCGGCCTGCGTCAGTTTATTCAACAA GGTCTGGGCATTTTTGGCGGCGCCATCGCCGATCGCTTTGGCGCGAAACCGATGATTGTC ACCGGTATGCTGATGCGCGCCGCAGGCTTTGCCACCATGGGTATCGCGCATGAGCCCTGG CTCTTGTGGTTTTCCTGCTTTCTTTCCGGTCTCGGCGGTACGCTTTTCGACCCGCCGCGT TCAGCGCTGGTGGTCAAATTAATTCGTCCGGAGCAACGGGGCCGCTTCTTCTCTCTGTTG ATGATGCAGGACAGCGCGGGCGCGGTGATTGGCGCGCTGCTGGGAAGCTGGTTGCTACAA TACGATTTTCGCCTGGTCTGCGCGACGGGCGCTATTTTGTTCATATTATGCGCCCTTTTC AACGCATGGCTGCTTCCGGCCTGGAAGCTATCAACGGCCAGAACGCCGGTGCGTGAAGGA ATGCGCCGCGTCATGAGCAATAAAAGGTTTGTCACCTACGTGCTGACGCTGGCGGGCTAC TATATGCTGGCGGTACAGGTCATGTTAATGCTGCCGATTATGGTAAACGATATCGCCGGT TCGCCTGCTGCCGTGAAATGGATGTACGCTATTGAGGCGTGTCTCTCGCTGACGTTGCTC TACCCGATTGCCCGCTGGAGCGAAAAGCGTTTTCGGCTGGAGCATCGGCTGATGGCCGGT TTGCTCGTCATGTCGCTGAGCATGCTCCCCATCGGGATGGTGGGCAATTTACAGCAGCTT TTTACGCTTATTTGCGCTTTCTACATCGGCTCGGTTATCGCCGAACCGGCGCGCGAAACG CTCAGCGCGTCGCCCGCGGACGCGAGGGCGCGGGGAAGCTATATGGGCTTTAGCCGTCTG GGATTAGCCATTGGCGGCGCGATTAGTTATATCGGCGGCGGCTGGTTGTTTGATATGGGT AAAGCGCTTGCGCAGCCTGAACTACCGTGGATGATGCTCGGTATTATCGGCTTTATCACC TTTTTGGCTTTAGGCTGGCAATTTAGTCATAAGCGCACGCCGCGCCGGATGCTGGAACCC GGCGCCTGA >11111_1#11_04135 ATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACCGATCGTCTGGTGGTA CGTTTAGTGCATGAGCGTGATGCCTGGCGTCTGGCCGATTATTACGCGGAAAATCGTCAT TTTTTAAAACCCTGGGAACCGGTCCGTGATGAAAGTCATTGTTATCCTTCAGGATGGCAG GCGCGTCTGGGAATGATCGGTGAATTTCACAAACAGGGCTCCGCCTTCTATTTCGCGCTA CTTGATCCGGAAGAAAAAGAAATTATCGGCGTGGCGAATTTTTCCAATGTGGTGCGCGGT TCTTTTCATGCCTGTTATCTGGGCTATTCCATTGCGCAAGAGTGGCAGGGGCAAGGGCTG ATGTTTGAAGCCTTAACCGCTGCGATTCGCTATATGCAGCGCACTCAGCATATCCACCGT ATCATGGCGAACTATATGCCGCACAACAAACGTAGCGGCGCGTTGCTGGCGCGGCTTGGC TTTGAAAAAGAAGGCTATGCGAAAGATTACCTGTTGATTGATGGACAATGGCGCGACCAT GTCCTGACGGCGTTAACCACGCCGTTATGGACGCCGGGGCGTTGA >11111_1#11_04136 ATGAAATATGAATTAACCGCCACTGAAGCGCGAGTGATTGGCTGTCTGCTGGAAAAGCAG GTGACAACGCCGGAACAGTATCCGCTTTCCGTCAACGGGGTGGTGACAGCCTGTAATCAG AAAACCAACCGTGAACCGGTGATGAACCTGACGGAACAAGAGGTACAAGAACAGCTCGAT AACCTGGTGAAACGCCACTTTTTGCGTACGGTCAGCGGGTTTGGCAACCGCGTCACCAAA TATGAACAGCGCTTCTGTAATTCCGAATTTGGCGATCTGAAACTTAGCGCGGCGGAAGTG GCGCTCGTCACTACGTTGCTGCTGCGCGGCGCGCAAACGCCCGGCGAGTTGCGTAGCCGG GCGTCGCGGATGCATGAATTCAGCGATATGGCGGAAGTTGAATCCACGCTGGAACGGCTT GCCAGTCGTGAGGACGGCCCGTATGTCGTCCGTCTGGCGCGTGAACCGGGTAAGCGCGAA AGCCGCTATATGCACCTTTTTTGCGGCGACGTCGATGAACTGTCTCTCCAGACGTCTGCG CCGGAAAGTGCGTCGGGCGATCTTCAGTCGCGCGTCGAAGCGCTGGAAAGCGAAGTGGCG GAGTTAAAGCAGCGGCTGGATTCTTTGTTAGCTCACCTGGGAGAGTAA >11111_1#11_04137 GTGAGAACATTACGGATTGGCATTGTCGTGTTAGGTGGTATTGCGCAGAAGGCCTGGCTG CCGGTATTAACCAACACCGCCGGATGGACGTTACAGGGCGCCTGGTCTCCTTCGCGGGAT AAAGCCTTACGTATTTGCGAAAGCTGGCGCATACCGTATGTGGATTCGCTGGCGAATTTA GCGTCCGGCTGCGATGCGGTCTTCGTCCACTCCAGTACCGCAAGCCATTATGCCGTGGTC AGCGAACTTCTCAACGCTGGCGTCCATGTCTGCGTGGATAAACCGCTGGCGGAAAATCTA CGTGATGCCGAACGGCTGGTGGCGCTGGCGGCGCAAAAAAAATTGACGCTGATGGTTGGC TTTAATCGCCGTTTCGCGCCGCTGTACCGCGAACTGAAGACGCGCCTCGGCACTGCGGCG TCACTGCGTATGGATAAACATCGTACCGATAGCATCGGGCCGCATGACTTACGTTTTACT TTGCTCGATGACTATCTGCATGTCGTGGATACCGTTCTGTGGCTGGCGGGCGGCGAGGCG CGCCTTGCCAGCGGCACGTTGCTCACCAGCGAGTCCGGCGAAATGTGCTATGCGGAACAT CATTTTTCCGCCGACAAATTACAAATTACCACCAGTATGCACCGGCGCGCCGGAAGTCAG CGTGAATCGGTCCAGGCCGTCACCGATGGCGGGCTGTATGACGTGACGGATATGCGTGAA TGGCGCGAAGAGCGCGGGCAGGGTATTCTCATCAAACCCATTCCGGGTTGGCAAACAACG CTTGAGCAGCGTGGTTTTGTCGGATGCGCGCGGCATTTCATTGACTGCGTACAAAATCAG ACGGTTCCGGAAACGGCGGGGGAGCAGGCGATTTTGGCCCAGCGCGTCGTGGAGGCGCTG TGGCGGGACGCCATCAGCGAATAA >11111_1#11_04138 ATGCAGGAGTTTTACGCCAGGGTCTGGAATACAAAAGAAATGAATTTATTGAAATCGCTG GCTGCCGTCAGCTCGATGACTATGTTTTCACGCGTGTTGGGCTTTGCCCGTGATGCGATT GTCGCCAGAATTTTTGGCGCAGGGATGGCGACCGACGCCTTTTTTGTGGCGTTTAAACTT CCCAATCTACTACGCCGGATCTTTGCCGAAGGCGCTTTTTCTCAGGCCTTTGTGCCTATC CTGGCGGAATATAAGAGCAAGCAGGGTGAAGAAGCGACGCGGATCTTTGTCGCTTACGTT TCCGGCCTGTTGACGCTGGCATTGGCCGTCGTGACGGTGGCCGGTATGCTGGCCGCCCCG TGGGTGATTATGGTAACCGCGCCGGGTTTTGCCGATACTGCGGATAAATTTGCGCTGACG ACGCAACTGCTGCGGATTACGTTTCCCTATATTCTGCTGATCTCGCTGGCTTCACTGGTT GGCGCCATTCTCAACACCTGGAATCGCTTCTCTATTCCCGCTTTTGCGCCGACATTTCTT AATATCAGTATGATCGGTTTTGCATTATTCGCCGCGCCATACTTTAATCCGCCGGTGCTG GCGTTAGCCTGGGCAGTCACCGTCGGCGGCGTGCTGCAACTGGTGTATCAACTTCCGTAT TTGAAAAAGATCGGTATGCTGGTGCTGCCGCGCATTAACTTTCACGACACCGGGGCGATG CGGGTGGTCAAACAGATGGGGCCGGCGATTTTGGGCGTTTCCGTCAGTCAGATCTCCCTT ATCATCAATACCATTTTCGCCTCGTTTCTGGCCTCCGGCTCGGTCTCATGGTTGTACTAT GCCGATCGGTTGATGGAGTTCCCGTCCGGCGTGCTGGGCGTGGCGTTGGGGACCATCCTG TTGCCGTCATTGTCGAAAAGCTTTGCCAGCGGCAATCATGATGAGTACTGCCGCCTGATG GACTGGGGGCTGCGTTTGTGCTTTTTACTGGCGTTGCCGAGCGCGGTAGCGCTAGGCATT CTGGCGAAGCCGCTGACGGTCTCGCTGTTTCAGTACGGTAAATTCACCGCCTTTGATGCG GCGATGACGCAGCGGGCGTTAATCGCCTATTCGGTGGGGCTGATTGGCTTGATCGTCGTA AAAGTGCTGGCCCCGGGCTTCTATTCTCGCCAGGATATTAAAACGCCGGTGAAAATCGCC ATCGTGACGTTAATCATGACGCAGTTAATGAACCTGGCGTTTATTGGACCGCTGAAACAC GCCGGGCTGTCGCTCTCTATTGGTCTGGCGGCATGTCTCAATGCGTCGCTGCTGTACTGG CAACTGCGCAAACAGAATATCTTTACGCCACAACCGGGGTGGATGTGGTTCCTGATGCGT CTGATCATTTCCGTACTGGTAATGGCCGCCGTGTTGTTCGGCGTGTTGCATATTATGCCG GAGTGGTCGCAAGGGTCGATGCTATGGCGTTTGCTGCGTTTGATGGCGGTAGTGATCGCG GGTATCGCGGCCTATTTCGCCGCGCTTGCCGTGCTGGGCTTTAAAGTGAAAGAGTTTGTT CGCCGGACGGCGTAA >11111_1#11_04139 ATGACTCGTTTGTCAGAAATACTTGACCAGATGACCACCGTCCTGAATGACCTGAAGACG GTGATGGACGCCGAGCAACAACAGCTTTCCGTAGGCCAGATTAACGGCAGCCAGCTACAG CGTATTACAGAAGAAAAAAGCTCGTTGCTGGCGACGCTGGATTATCTGGAACAACAGCGC CGTCTGGAGCAGAACGCGCAGCGTAGCGCAAACGATGACATTGCAGAGCGCTGGCAGGCG ATTACCGAAAAAACGCAGCATCTGCGCGACCTCAACCAGCACAACGGCTGGCTGCTGGAA GGGCAAATCGAGCGTAATCAACAGGCGCTGGAGGTGCTGAAACCTCACCAGGAGCCGACC TTGTACGGGGCTGACGGTCAGACTTCCGTCTCTCACCGCGGCGGTAAAAAAATATCTATC TAA >11111_1#11_04140 ATGAGCATTGACCGTACCTCACCTTTGAAACCCGTTAGCACTGTCCAGACGCGCGAAACC AGCGACACGCCGGTACAAAAAACGCGTCAGGAAAAAACGTCCGCCGCGACGAGCGCCAGC GTAACGTTAAGCGACGCGCAAGCGAAGCTTATGCAGCCAGGCGTCAGCGACATTAATATG GAACGCGTCGAAGCATTAAAAACGGCTATCCGTAACGGTGAGTTAAAAATGGATACGGGA AAAATAGCAGACTCGCTCATTCGCGAGGCGCAGAGCTACTTACAGAATAAATAA >11111_1#11_04141 ATGCAAACGTTAAAACGAGGATTCGCCGTGGCGGCTTTGCTGTTCAGCCCCCTGACAATG GCGCAGGACATCAACGCCCAGCTGACCACGTGGTTTTCCCAGCGTCTGGCTGGCTTCAGC GACGAGGTGGTTGTCACGCTCCGTTCACCGCCCAATCTGCTACCGAGCTGCGAGCAGCCA GCCTTCAGCATGACGGGCAGCGCGAAGCTGTGGGGCAACGTCAATGTGGTGGCGCGCTGC GCCAATGAAAAACGTTATTTGCAGGTGAATGTGCAAGCGACCGGCAATTATGTCGCCGTA GCCGCGCCCGTCGCGCGCGGCGGAAAATTGACGCCGGCCAACGTCACGCTAAAACGTGGC AGACTGGATCAGTTACCGCCGCGGACGGTACTGGATATCCGTCAGATTCAGGATGCCGTC AGTTTGCGCGATCTCGCTCCCGGGCAGCCGGTACAGCTTACGATGATACGTCAGGCCTGG CGTGTCAAAGCGGGTCAACGAGTACAGGTCATCGCCAATGGCGAGGGGTTTAGCGTCAAT GCGGAAGGTCAGGCGATGAATAATGCCGCCGTCGCGCAAAATGCGCGCGTGCGCATGACA TCGGGTCAAATCGTGAGTGGAACCGTCGATTCTGATGGGAATATTCTTATTAACCTATAA >11111_1#11_04142 ATGCTCGACAGGCTCGATGCCGCCTTACGATTTCAGCAGGAAGCGCTAAATCTGCGCGCG CAACGTCAGGAAATATTAGCGGCGAATATCGCCAATGCCGATACGCCGGGGTATCAGGCG CGCGATATTGATTTTGCCAGTGAGTTAAAAAAAGTGATGGTGCGCGGACGGGAAGAAACC GGCGGCGTCGCGTTGTCGTTGACTTCTTCTCGCCATATTCCCGCCCAGGCGGTCTCTTCT CCCGCAGTGGATCTGCTTTACCGCGTACCCGATCAGCCTTCTTTGGATGGTAACACCGTA GATATGGACAGGGAACGTACGCAGTTTGCGGATAACAGTCTCAAATATCAGATGGGGCTT ACCGTTCTGGGTAGCCAACTCAAAGGCATGATGAATGTGCTACAGGGAGGAAACTAA >11111_1#11_04143 GTGGCGCTGTTAAACATTTTTGATATTGCCGGATCGGCGCTTGCCGCACAGTCCAAGCGG TTGAACGTTGCGGCCAGTAACCTTGCGAATGCGGATAGCGTCACCGGCCCGGACGGACAG CCTTATCGCGCCAAACAGGTGGTTTTTCAGGTGGACGCCGCGCCGGGTCAAGCCACTGGC GGGGTAAAGGTCGCCAGCGTGATTGAAAGTCAGGCACCGGAAAAGCTGGTTTATGAGCCA GGCAATCCGCTGGCGGACGCTAATGGTTACGTCAAAATGCCCAACGTCGATGTGGTCGGC GAAATGGTCAACACGATGTCAGCCTCGCGCAGCTATCAGGCAAATATCGAAGTCCTGAAT ACCGTAAAAAGCATGATGCTTAAAACGCTGACATTAGGCCAGTAA >11111_1#11_04144 ATGTCTATTGCCGTAAATATGAATGACCCGACCAACACGGGCGTCAAAACGACGACCGGC AGCGGGTCGATGACCGGAAGCAACGCTGCCGATCTGCAAAGCAGTTTCCTGACCTTACTG GTCGCGCAATTGAAGAACCAGGACCCGACTAACCCATTACAAAATAATGAGTTAACGACA CAGTTGGCGCAAATCAGTACCGTGAGCGGCATTGAAAAACTGAATACGACGCTGGGGGCT ATTTCCGGGCAAATCGATAATAGTCAGTCCCTACAGGCGACCACGCTGATTGGACATGGC GTTATGGTGCCTGGCACCACAATTCTGGCGGGTAAAGGCGCGGAAGAAGGGGCCGTGACG TCCACGACGCCGTTTGGCGTGGAATTGCAACAGCCTGCGGACAAAGTGACGGCAACCATT ACCGATAAAGATGGCCGGGTGGTACGGACGCTGGAGATCGGTGAGTTGCGAGCCGGGGTA CACACCTTTACCTGGGATGGTAAGCAAACGGACGGAACAACGGTACCGAATGGTTCTTAC AACATTGCGATTACCGCCAGCAATGGCGGGACGCAACTGGTGGCGCAGCCGCTGCAATTC GCTCTGGTACAGGGCGTGACGAAGGGCAGTAACGGCAACCTGTTGGATCTGGGTACCTAC GGCACCACCACACTCGACGAAGTTCGGCAAATAATCTAA >11111_1#11_04145 ATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTGCGGCCACCAACCTTGATGTTATC GGTAATAACATCGCCAACTCCGCCACCTATGGCTTTAAGTCCGGTACGGCATCATTTGCC GATATGTTCGCCGGTTCCAAAGTGGGGTTGGGCGTAAAAGTGGCGGGGATTACCCAGGAT TTTACCGACGGTACGACAACGAACACCGGGCGCGGGCTGGATGTCGCGATTAGCCAGAAC GGTTTTTTCCGCCTGGTAGACAGCAACGGTTCCGTGTTCTATAGCCGCAACGGCCAGTTC AAACTGGACGAGAACCGTAACCTGGTCAATATGCAGGGGATGCAGTTGACCGGCTATCCG GCCACCGGTACGCCGCCGACCATTCAGCAGGGGGCGAATCCTGCGCCGATCACCATTCCG AACACGCTGATGGCGGCGAAATCGACCACCACCGCGTCAATGCAGATCAACCTGAACTCA ACGGACCCTGTACCGTCTAAAACGCCCTTTAGCGTGAGTGATGCGGATTCGTATAACAAA AAAGGCACCGTCACCGTTTATGACAGCCAGGGTAATGCCCATGACATGAACGTCTATTTT GTGAAAACCAAAGATAATGAATGGGCTGTGTACACCCATGACAGCAGCGATCCTGCAGCC ACTGCGCCAACAACGGCGTCCACTACGCTGAAATTCAATGAAAACGGGATTCTGGAGTCT GGCGGTACGGTGAACATCACCACCGGTACGATTAATGGCGCGACAGCGGCCACCTTCTCC CTCAGCTTCCTTAACTCCATGCAGCAGAACACCGGGGCTAATAACATCGTCGCCACCAAT CAAAACGGCTATAAGCCTGGCGACCTGGTGAGCTACCAGATTAACAATGATGGCACCGTG GTTGGCAACTACTCCAACGAGCAGGAGCAGGTGCTGGGGCAGATTGTGCTGGCTAACTTC GCCAACAACGAAGGTCTGGCATCCCAGGGCGATAACGTCTGGGCGGCGACGCAGGCCTCC GGGGTAGCGCTGCTGGGGACTGCCGGTTCCGGCAACTTCGGTAAGCTGACGAACGGCGCG CTGGAAGCCTCTAACGTGGATTTGAGTAAAGAGCTGGTGAATATGATCGTCGCGCAGCGT AACTACCAGTCGAATGCGCAGACCATCAAAACCCAGGACCAGATCCTCAATACGCTGGTT AACCTGCGCTAA >11111_1#11_04146 ATGGATCACGCAATTTATACCGCCATGGGGGCGGCCAGCCAGACGCTTAACCAGCAGGCG GTAACGGCCAGCAACCTGGCTAATGCCTCAACGCCGGGCTTTCGCGCGCAGCTTAACGCG CTACGCGCGGTGCCCGTTGATGGCCTCTCTTTAGCGACGCGCACGTTGGTTACGGCGTCG ACGCCGGGGGCGGATATGACCCAGGGTCAGTTGGACTACACTTCCCGCCCGCTGGATGTT GCGTTACAGCAGGACGGCTGGCTGGTGGTGCAAGCGGCGGATGGCGCTGAAGGATATACC CGTAACGGGAATATCCAGGTGGGCCCGACCGGGCAGTTAACCATTCAGGGACATCCGGTT ATCGGCGAAGGCGGCCCGATTACCGTTCCGGAAGGGTCGGAAATCACCATTGCGGCAGAC GGCACGATCTCCGCGCTCAATCCCGGCGACCCGCCAAACACGGTGGCGCCCGTTGGGCGG CTGAAGCTGGTCAAAGCGGAAGGCAATGAGGTGCAGCGGAGCGATGACGGTTTATTCCGC CTTACCGCCGAGGCACAGGCTGAACGCGGGGCGGTACTGGCCGCCGACCCGTCAATTCGC ATTATGTCGGGCGTGCTGGAGGGCAGTAACGTCAAGCCGGTTGAAGCCATGACCGACATG ATCGCCAACGCACGTCGTTTTGAAATGCAGATGAAGGTTATCACCAGCGTAGATGAGAAC GAAGGGCGAGCTAACCAACTGCTGTCGATGAGTTAA >11111_1#11_04147 ATGATCAGTTCATTATGGATCGCCAAAACCGGTCTGGACGCGCAGCAAACCAATATGGAT GTGATTGCCAATAACCTGGCAAACGTCAGCACCAATGGTTTTAAGCGTCAGCGCGCGGTA TTTGAAGATCTGTTGTATCAGACCATCCGCCAGCCGGGCGCGCAGTCGTCCGAGCAGACG ACGCTGCCTTCCGGGCTGCAAATCGGTACCGGCGTGCGTCCGGTCGCCACGGAGCGCCTG CACAGTCAGGGGAACCTGTCGCAGACCAACAACAGTAAAGATGTGGCGATTAAAGGGCAG GGCTTTTTCCAGGTCATGCTGCCGGACGGTACGTCTGCCTATACCCGCGACGGCTCTTTC CAGGTGGATCAGAATGGTCAACTGGTGACGGCGGGCGGTTTTCAGGTGCAGCCGGCAATC ACCATTCCGGCCAACGCGTTAAGCATCACGATTGGCCGCGACGGCGTGGTCAGCGTTACC CAGCAAGGGCAGGCCGCGCCGGTTCAGGTCGGGCAGCTTAACCTGACCACCTTTATGAAC GACACCGGTCTGGAAAGCATCGGCGAGAACCTCTATATCGAAACGCAATCGTCCGGCGCG CCGAACGAAAGCACGCCGGGGCTCAACGGCGCGGGGTTGTTGTATCAAGGGTATGTCGAA ACGTCGAACGTTAACGTGGCGGAAGAGCTGGTGAACATGATTCAGGTTCAACGCGCCTAT GAAATTAACAGTAAAGCAGTATCGACGACCGATCAGATGCTGCAGAAACTGACGCAACTC TAA >11111_1#11_04148 ATGGCCCTGATGGTCGCGACGCTGACAGGATGCGCCTGGATACCCGCTAAACCGCTCGTG CAGGGGGCGACCACGGCGCAGCCGATACCTGGCCCGGTACCGGTGGCGAATGGCTCCATA TTTCAGTCTGCGCAGCCGATTAATTATGGCTATCAGCCGCTTTTTGAAGATCGTCGACCG CGTAATATCGGCGATACGCTCACGATTGTGTTACAGGAAAACGTCAGCGCCAGTAAAAGC TCGTCGGCAAATGCCAGCCGCGACGGCAAAACCAGCTTTGGTTTTGATACGGTACCGCGT TATCTGCAGGGATTATTCGGTAATTCCCGCGCGGATATGGAGGCCTCCGGCGGCAACTCT TTTAATGGTAAAGGCGGCGCGAATGCCAGCAATACCTTTAGCGGCACGCTGACCGTGACC GTCGATCAGGTTCTGGCCAATGGCAATTTACACGTCGTGGGGGAAAAACAGATCGCGATT AATCAGGGAACGGAATTCATCCGCTTCTCCGGCGTGGTAAATCCACGCACCATCAGCGGT AGCAACTCTGTTCCCTCGACACAGGTGGCGGATGCGCGGATTGAATATGTCGGGAACGGC TATATTAACGAAGCGCAAAATATGGGCTGGCTGCAACGTTTCTTCCTTAATTTGTCGCCG ATGTAA >11111_1#11_04149 GTGTTTAAAGCTCTTGCAGGAATCGTTCTGGCACTGGTTGCCACTCTGGCGCACGCCGAG CGTATCCGGGATCTGACCAGTGTCCAGGGAGTACGGGAAAACTCGCTGATCGGCTACGGG CTGGTGGTCGGGCTGGACGGTACGGGCGACCAGACGACCCAGACGCCATTTACCACCCAG ACGCTGAATAACATGCTGTCACAACTGGGGATTACGGTCCCCACCGGCACCAATATGCAG TTGAAAAACGTGGCGGCGGTGATGGTGACGGCGTCGTATCCGCCTTTTGCGCGACAGGGA CAAACGATCGATGTCGTCGTTTCCTCAATGGGGAACGCTAAAAGTCTGCGTGGCGGGACG TTATTAATGACGCCGTTAAAAGGGGTGGACAGCCAGGTGTATGCTCTGGCGCAGGGCAAT ATTCTGGTCGGCGGCGCGGGCGCTTCCGCAGGCGGCAGTAGCGTGCAGGTTAACCAGCTT AATGGCGGGCGCATCACTAATGGCGCGATTATCGAACGCGAGTTGCCGACTCAGTTCGGC GCTGGCAACACCATTAATCTGCAATTGAACGACGAAGATTTTACGATGGCGCAGCAAATT ACCGACGCCATCAACCGCGCCCGCGGTTACGGCAGCGCCACTGCGCTTGATGCGCGAACG GTACAGGTACGCGTGCCCAGCGGCAACAGCTCGCAGGTGCGTTTTCTGGCGGACATTCAA AATATGGAAGTCAACGTGACGCCGCAGGATGCAAAAGTCGTGATCAACTCGCGTACCGGT TCGGTGGTCATGAATCGGGAAGTCACGCTGGATAGCTGCGCTGTGGCGCAGGGCAATTTG TCAGTGACAGTCAATCGCCAACTCAACGTCAACCAGCCGAATACGCCATTTGGCGGCGGG CAGACCGTGGTGACGCCACAGACTCAGATAGATTTGCGTCAGAGCGGCGGATCGCTACAG AGCGTGCGTTCCAGCGCCAATCTGAACAGCGTAGTGCGCGCGCTGAATGCGCTTGGCGCG ACGCCGATGGATCTGATGTCGATTTTGCAGTCCATGCAGAGCGCGGGCTGTCTACGCGCC AAACTGGAAATCATCTGA >11111_1#11_04150 ATGATCGGAGACGGTAAATTGCTGGCCAGCGCGGCCTGGGATGCGCAATCTCTGAACGAA CTGAAAGCGAAAGCGGGCCAGGACCCGGCGGCGAATATCCGTCCTGTGGCCCGTCAGGTG GAAGGGATGTTTGTGCAGATGATGCTGAAAAGTATGCGCGAGGCTTTACCCAAAGATGGT TTATTCAGCAGCGATCAGACGCGTCTGTATACCAGCATGTATGACCAGCAGATCGCCCAG CAGATGACCGCCGGTAAGGGATTGGGGCTGGCGGATATGATGGTTAAACAGATGACGGGC GGGCAGACGATGCCTGCAGATGATGCGCCGCAAGTACCGCTTAAATTCTCCCTGGAGACG GTAAACAGCTATCAAAATCAGGCGCTGACCCAACTGGTGCGCAAAGCCATACCGAAAACG CCGGACAGCAGCGATGCGCCGCTCTCCGGCGACAGTAAAGACTTTCTGGCCCGGCTTTCG CTCCCGGCGAGGCTGGCCAGCGAACAAAGCGGGGTGCCGCATCATCTGATTCTGGCGCAG GCGGCGCTGGAGTCCGGCTGGGGGCAGCGGCAAATCCTGCGGGAGAATGGCGAACCCAGC TATAACGTATTTGGCGTGAAAGCGACCGCCAGTTGGAAAGGGCCGGTGACGGAAATCACC ACCACTGAATACGAAAATGGCGAAGCGAAAAAAGTGAAAGCGAAATTCCGCGTCTATAGC TCGTATCTGGAGGCGTTATCGGATTATGTCGCGCTGTTAACGCGTAACCCACGCTACGCT GCCGTGACCACTGCCGCCACGGCAGAGCAGGGCGCAGTGGCTCTGCAAAACGCCGGATAC GCCACTGACCCGAATTACGCGCGTAAATTGGCCAGCATGATTCAGCAGTTGAAAGCGATG AGTGAAAAGGTCAGCAAAACCTACAGCGCGAATCTCGACAATCTCTTTTAA >11111_1#11_04151 ATGTCCAGCTTGATTAATCACGCCATGAGCGGACTTAACGCCGCGCAGGCCGCGTTAAAT ACGGTCAGTAATAACATCAACAATTATAACGTTGCGGGTTATACCCGGCAGACAACTATT CTGGCGCAGGCAAACAGTACGTTAGGGGCTGGCGGCTGGATAGGTAATGGCGTTTACGTT TCAGGCGTACAGCGCGAATATGATGCGTTTATCACTAATCAGCTACGCGGCGCGCAAAAC CAGAGCAGCGGCTTAACCACGCGCTATGAACAAATGTCGAAAATCGACAACCTGCTGGCC GATAAATCCAGCTCACTGTCTGGCTCGCTGCAGAGTTTTTTTACCAGCCTGCAAACGTTA GTCAGTAATGCGGAAGATCCTGCGGCGCGTCAGGCGCTGATTGGTAAAGCGGAAGGGCTG GTAAACCAGTTCAAAACCACCGATCAGTATCTGCGCGATCAGGATAAACAGGTCAATATC GCGATTGGCTCCAGCGTGGCGCAAATCAACAATTACGCGAAGCAGATAGCTAACCTGAAC GATCAAATCTCCCGTATGACGGGCGTAGGCGCGGGCGCATCGCCGAACGACCTGCTCGAT CAACGTGATCAGTTGGTTAGCGAGCTTAACAAGATCGTTGGCGTCGAGGTGAGTGTACAG GACGGCGGCACCTATAACCTGACGATGGCCAATGGCTATACGCTGGTGCAGGGGTCGACG GCGCGTCAGTTGGCGGCGGTTCCCTCCAGCGCCGACCCGACGCGAACGACTGTCGCTTAT GTCGATGAGGCCGCCGGTAACATCGAAATTCCGGAAAAGTTGCTGAACACCGGTTCGCTC GGCGGGCTACTGACGTTCCGTTCTCAGGATCTGGATCAGACTCGTAATACGCTGGGCCAG TTGGCGTTGGCGTTTGCCGATGCGTTTAACGCGCAGCATACCAAAGGTTATGACGCCGAC GGCAATAAAGGGAAAGACTTCTTTAGCATTGGCTCGCCGGTGGTATATAGCAACAGTAAT AATGCCGATAAAACGGTATCGCTAACCGCTAAGGTGGTCGACAGCACGAAGGTTCAGGCG ACGGATTATAAGATTGTTTTTGACGGTACAGACTGGCAGGTTACTCGCACTGCGGATAAC ACCACCTTCACGGCAACAAAAGATGCTGACGGAAAACTGGAGATTGACGGTCTGAAAGTG ACGGTAGGGACTGGCGCACAGAAAAACGACAGTTTTCTTCTCAAGCCGGTCAGCAATGCT ATCGTCGACATGAACGTTAAAGTGACAAATGAAGCCGAGATTGCGATGGCGTCTGAGTCA AAACTCGATCCTGATGTGGATACCGGCGACAGCGATAACCGCAATGGTCAGGCATTGCTG GACTTACAAAACAGCAATGTAGTGGGCGGCAACAAAACCTTTAACGATGCTTACGCCACG TTGGTCAGCGATGTGGGTAACAAAACGTCAACGCTGAAAACCAGCAGCACCACGCAGGCG AATGTGGTTAAACAGCTTTATAAACAGCAACAGTCGGTTTCCGGCGTTAACCTCGACGAA GAGTACGGCAATTTGCAGCGTTATCAGCAGTATTATCTGGCGAATGCGCAAGTATTGCAG ACCGCGAATGCGCTGTTTGATGCGTTATTGAATATTCGCTAA >11111_1#11_04152 ATGCGTATCAGTACCCAGATGATGTACGAACAAAATATGAGCGGCATCACTAATTCTCAG GCCGAATGGATGAAGCTGGGCGAGCAGATGTCTACCGGTAAGCGCGTTACCAACCCATCT GACGATCCGATCGCCGCGTCGCAGGCGGTAGTACTCTTTCAGGCGCAGGCGCAGAATAGC CAGTACGCCCTGGCGCGTACGTTTGCCACCCAAAAAGTGTCGCTGGAAGAAAGCGTACTC AGTCAGGTGACGACGGCGATTCAAACCGCGCAGGAAAAAATCGTCTATGCCGGAAACGGC ACGTTAAGCGACGATGACCGCGCGTCGCTGGCGACGGATTTACAGGGGATCCGCGATCAG CTGATGAACCTGGCAAACAGCACTGACGGCAATGGTCGCTATATCTTTGCCGGGTATAAA ACGGAAGCGGCGCCATTCGACCAGGCGACAGGTGGTTATCATGGCGGCGAGAAAAGTGTT ACCCAGCAGGTGGATTCCGCACGCACGATGGTAATTGGCCATACGGGAGCGCAAATTTTT AATAGCATCACCAGCAATGCGGTGCCGGAACCGGATGGCTCGGACTCCGAAAAGAATCTG TTTGTCATGCTCGATACGGCAATTGCCGCGCTCAAGACCCCGGTGGAAGGCAATGACGTG GAAAAAGAAAAAGCCGCTGCCGCCATTGATAAAACCAATCGCGGCTTAAAAAATTCGCTT AATAACGTCCTGACCGTTCGTGCGGAACTGGGAACGCAACTGAGCGAACTCAGTACGCTG GATTCACTGGGAAGCGACCGTGCGCTGGGACAGAAGCTACAGATGAGCAACCTGGTAGAT GTGGACTGGAACTCGGTCATTTCCTCCTACGTCATGCAACAGGCGGCATTACAGGCGTCC TATAAAACGTTTACCGACATGCAGGGAATGTCGCTTTTCCAGTTGAACCGGTAA >22222_2#22_04112 ATGAAACTTTTAAGAGTGGCAGCATTCGCAGCAATCGTAGTTTCTGGCAGTGCTCTGGCT GGCGTCGTTCCACGATGGGGCGGCGGCGGTAATCATAACGGCGGCGGCAATAGTTCCGGG CCGGATTCCACGTGGAGCATTTATCAGTACGGTTCCGCTAACGCTGCGCTTGCTCTGCAA AGCGATGCCCGTAGATCTGAAACGACCATTACCCAGAGCGGTTATGGTAACGGCGCCGAT GTAGGCCAGGGTGGGGATAACAGTACTATTGAACTGACTCAGAATGGTTTCAGAAACAAT GCCACCATCGACCGGTGGAACGCTAAAAACTCCGATATTACTGTCGGTCAATACGGCGGT AATAACGCCGCGCGGGTTAATCAGACCGCATCTGATTCCAGCGTAATGGTGCGTCAGGTT GGTTTTGGCAACAGCGCCACGGCTAACCAGTATTAA >22222_2#22_04141 ATGCAAACGTTAAAACNNGGATTCGCCGTGGCGGCTTTGCTGTTCAGCCCCCTGACAATG GCGCAGGACATCAACGNNCAGCTGACCACGTGGTTTTCCCAGCGTCTGGCTGGCTTCAGC GACGAGGTGGTTGTCANNCTCCGTTCACCGCCCAATCTGCTACCGAGCTGCGAGCAGCCA GCCTTCAGCATGACGGNNAGCGCGAAGCTGTGGGGCAACGTCAATGTGGTGGCGCGCTGC GCCAATGAAAAACGTTNNTTGCAGGTGAATGTGCAAGCGACCGGCAATTATGTCGCCGTA GCCGCGCCCGTCGCGCNNGGCGGAAAATTGACGCCGGCCAACGTCACGCTAAAACGTGGC AGACTGGATCAGTTACNNCCGCGGACGGTACTGGATATCCGTCAGATTCAGGATGCCGTC AGTTTGCGCGATCTCGNNCCCGGGCAGCCGGTACAGCTTACGATGATACGTCAGGCCTGG CGTGTCAAAGCGGGTCNNCGAGTACAGGTCATCGCCAATGGCGAGGGGTTTAGCGTCAAT GCGGAAGGTCAGGCGANNAATAATGCCGCCGTCGCGCAAAATGCGCGCGTGCGCATGACA TCGGGTCAAATCGTGANNGGAACCGTCGATTCTGATGGGAATATTCTTATTAACCTATAA Roary-3.8.0/t/data/expected_prank_input.fa.aln000066400000000000000000000073551304207556500213070ustar00rootroot00000000000000>1111#5_04506 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------ATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGT >1234_8#75_04759 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGCGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGT >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_DT104_v1_02853 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTTTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGT >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_SL1344_v2_02736 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTGTGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGT >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_D23580_v1_02783 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGT >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_DT2_v1_02741 ATGAGCGAGCAGTTAACGGAC---GTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGT Roary-3.8.0/t/data/expected_query_1.fna000066400000000000000000000357441304207556500177520ustar00rootroot00000000000000>abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAG Roary-3.8.0/t/data/expected_query_2.fna000066400000000000000000000357441304207556500177530ustar00rootroot00000000000000>abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAG Roary-3.8.0/t/data/expected_real_data_core_gene_alignment.aln000066400000000000000000004021001304207556500243330ustar00rootroot00000000000000>real_data_1 ATGAAAAAATCATTACTCGCTGTTGCTGTGGCAGGGGCTGTTTTGTTGTCATCCGCCGTA CAGGCGCAGACAACGCCGGAAGGTTATCAATTACAACAGGTGCTGATGATGAGCCGCCAT AATCTGCGGGCGCCGCTGGCGAATAATGGCAACGTACTGGCGCAGTCGACGCCGAACGCC TGGCCGGCGTGGGACGTTCCCGGCGGGCAACTGACGACGAAAGGCGGCGTGCTGGAAGTC TATATGGGACACTACACACGTGAATGGCTGGTCGCGCAGGGGCTGATACCGTCGGGAGAA TGTCCGGCGCCCGACACGGTATATGCCTATGCGAATAGTTTGCAGCGCACCGTCGCCACC GCGCAATTTTTCATTACCAGCGCTTTCCCCGGCTGTGATATTCCTGTTCATCATCAGGAA AAAATGGGCACTATGGACCCTACCTTCAATCCGGTGATTACCGATGATTCCGCCGCGTTC CGGCAACAGGCCGTACAGGCGATGGAAAAGGCGCGTAGTCAGCTACATCTTGATGAGAGT TATAAACTGCTTGAGCAGATAACGCATTATCAGGACTCGCCGTCCTGCAAAGAGAAGCAT CAGTGTTCGCTAATCGACGCGAAAGATACCTTCAGCGCGAACTATCAGCAAGAGCCTGGC GTGCAGGGGCCGCTGAAAGTAGGGAACTCGCTGGTGGATGCGTTTACCCTGCAATATTAC GAAGGCTTTCCGATGGATCAGGTCGCTTGGGGCGGGATCCACACCGATCGGCAGTGGAAG GTGCTGTCAAAACTGAAAAACGGCTACCAGGACAGCCTGTTTACCTCACCCACGGTGGCG CGCAATGTCGCTGCGCCGCTGGTAAAATATATCGATAAGGTGCTGGTTGCCGAGCGCGTT AGCGCGCCGAAGGTTACCGTGCTGGTGGGGCATGATTCCAATATCGCGTCGCTGCTGACG GCGCTGGATTTTAAACCCTATCAGCTCCATGACCAGTATGAGAGAACGCCGATTGGTGGT CAGCTTGTCTTCCAACGCTGGCATGACGGTAACGCTAACCGGGATTTGATGAAAATCGAG TATGTCTACCAGAGCGCCCGGCAGTTACGTAATGCGGAAGCGTTAACGCTCAAATCGCCT GCGCAAAGGGTAACGCTGGAACTGAAAGGATGTCCGGTGGATGCGAACGGCTTCTGTCCG CTGGATAAGTTCGATAACGTCATGAACACTGCTGCAAAATAGATGGAAAAGAATAATGAA GTCATTCAGACCCATCCGCTTGTAGGATGGGACATCAGCACCGTCGATAGCTATGATGCG CTGATGCTGCGTTTACACTACCAGACCCCAAATCGTCCGGAACCGGAAGGGACTGAAGTT GGTCAAACGCTCTGGTTAACGACAGATGTAGCCAGGCAATTTATTTCAATATTAGAAGCC GGCATCGCCAAAATAGAATCAGGCGATTACCAGGAAAACGAGTATCGTCACCATTAGATG GAACTTAAGGATTATTACGCCATTATGGGCGTGAAACCGACGGACGATCTCAAGACGATT AAGACCGCCTATCGCCGACTGGCCCGCAAGTACCATCCAGATGTCAGCAAAGAACCCGAT GCCGAAGCCCGTTTCAAAGAGGTTGCTGAAGCATGGGAAGTGCTGAGTGATGAGCAACGG CGCGCCGAGTATGACCAGTTATGGCAACACCGTAACGATCCACAATTTAATCGCCAGTTC CAGCAACACGAAGGCCAGCCGTATAACGCCGAAGATTTTGATGATATTTTCTCGTCTATT TTTGGTCAGCACGGTCGTCATTCGCACCACCGCCACGCCGCACGCGGTCATGATATCGAA ATTGAAGTGGCGGTATTCCTGGAAGAAACGCTGGAAGAGCACCAGCGTACGATTAGCTAT TCCGTCCCCGTTTATAACGCGTTCGGCCTGGTGGAGCGGGAAATTCCCAAAACATTGAAT GTGAAAATCCCGGCTGGCGTCAGCAACGGGCAACGAATCAGACTGAAAGGCCAGGGCACG CCGGGGGAAAACGGCGGACCTAATGGCGATTTATGGCTCGTTATCCATATTGCCCCGCAT CCGCTCTTTGATATCGTCAATCAGGATCTGGAAGTCGTCCTTCCGCTTGCCCCATGGGAG GCGGCGCTCGGCGCTAAGGTGTCTGTGCCAACGCTTAAAGAGCGTATTTTGCTGACCATT CCCCCCGGCAGCCAGGCAGGTCAGCGGCTGCGTATCAAAGGAAAAGGATTAGCCAGTAAA AAGCACACTGGCGATCTCTATGCCATCATCAAAATCGTTATGCCGCCGAAACCTGACGAG AAAACAGCTGCCCTGTGGCAACAACTGGCGGACGCGCAGTCGTCCTTTGACCCACGCCAG CAATGGGGGAAAGCATAAATGGCTAACATCACTGTCACCTTTACCATCACCGAATTTTGT TTGCACACCGGCGTGACGGAAGAGGAGCTAAACGAAATCGTCGGACTTGGCGTAATTGAG CCTTACGAAGACGATAACGCCGACTGGCAATTCGACGATCGCGCAGCGAGCGTGGTACAA CGCGCGCTACGCTTACGCGAGGAGCTGGCGCTCGACTGGCCAGGGATCGCGGTCGCGTTA ACGCTGCTGGAAGAGAATTCACGGCTGCGCGAAGAAAACCGGTTACTGCTGCAACGCCTT TCTCGCTTTATCTCGCATCCCTAAATGTCATCTTGTTGGAGATTTACGGATTCGCTAACA AGCCTATGGCATACTGCGTTGATGAAGATTTTATTGATTGAAGATAACCAGAAAACCATT GAGTGGGTACGTCAGGGACTCACGGAGGCAGGCTATGTGGTTGATTATGCCTGTGATGGA CGAGACGGATTACACCTAGCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATG CTGCCGGGGCTTGATGGATGGCAGGTTTTACGCGCGTTGCGCACTGCATATCAGCCCCCT GTTATTTGCCTGACGGCGCGCGACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGC GCTAATGATTACCTTGTTAAGCCTTTTTCCTTCGCCGAACTGCTGGCCCGGGTGAGAGCT CAACTCAGACAGCATGTCCCGGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGAT GCCACAAAGCAATCGGTGTTACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTC CTGCTCCTCTGGTTACTGGCGTCCCGGGCAGGGGAAATCGTGCCCCGAACCGCGATCGCC AGCGAAGTTTGGGGAATTAACTTTGATAGTGAAACCAACACCGTTGATGTCGCGATTCGT CGGCTGCGCGCCAAAGTAGACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCAGGGG ATGGGTTATCGATTACAGGCGGAAACGTCGCAGAATGGTTAAATGAAAAACAAATTGTTA TTTATGATGTTGACAATACTGGGTGCGCCTGGGATTGCAACCGCGACAAATTATGATCTG GCTCGTTCAGAGTATAATTTTGCGGTAAATGAATTAAGCAAGTCTTCATTTAATCAGGCG GCCATTATTGGTCAAGTCGGCACGGATAATAGTGCCAGAGTACGCCAGGAAGGATCAAAA CTATTGTCCGTTATTTCACAAGAAGGAGAAAATAATCGGGCGAAAGTCGACCAGGCAGGG AATTATAACTTTGCGTATATTGAGCAAACGGGCAATGCCAACGATGCCAGTATATCGCAA AGCGCTTACGGTAATAGTGCGGCTATTATCCAGAAAGGTTCTGGAAATAAGGCCAATATT ACCCAGTACGGTACGCAGAAAACAGCAGTTGTAGTGCAGAAACAGTCGCATATGGCTATT CGCGTCACCCAACGCTAAATGCATACTTTATTGCTCCTTGCCGCACTTTCAAATCAGATT ACGTTTACCACGACTCAGCAAGGCGATATTTACACGGTGATCCCTCAGGTCACATTAAAC GAACCCTGCGTCTGTCTGGTGCAAATTCTCTCTGTGCGCGACGGCGTCGGGGGACAAAGC CATACACAGCAAAAACAAACGCTATCTTTACCTGCTAATCAACCGATTGAGTTGTCTCGT CTTAGTGTAAATATATCTTCAGAGGACTCGGTTAAAATTATTGTTACTGTTTCGGACGGA CAATCACTGCATTTATCACAACAATGGCCGCCTTCTGCACAGTAGATGTTTAATGAAGTC CATAGTAGTCATGGTCACACACTATTGTTGATCACAAAGCCATCTCTGCAAGCTACGGCA TTATTGCAACATTTAAAGCAATCGCTGGCCATAACCGGAAAACTGCATAATATTCAACGT TCTCTGGAAGATATCTCAGCCGGTTGCATTGTTTTAATGGATATGATGGAAGCGGATAAG AAGCTTATCCACTATTGGCAGGATAATTTAAGCCGCAAAAACAATAATATAAAAACATTA TTGTTAAATACCCCTGACGATTATCCCTACCGTGAAATTGAAAACTGGCCTCATATTAAC GGCGTGTTTTACGCCACTGAAGACCAGGAACACGTGGTCAGCGGATTACAGGGTATTCTG CGGGGCGAATGCTATTTTTCACAAAAATTAGCCAGTTACCTGATTACACACTCAGGAAAT TACCGCTACAACAGCACCGAGTCCGCATTACTCACTCATCGCGAAAAAGAGATCCTCAAT AAGTTACGTATTGGTGCCTCTAATAATGAAATCGCCAGGTCGCTATTTATCAGCGAGAAT ACGGTTAAGACACATCTTTATAATCTTTTCAAAAAGATAGCTGTCAAAAATCGCACCCAG GCAGTTTCATGAATGAAACGCTATCTGACCTGGATTGTAGCAGCAGAGTTACTGTTCGCT ACCGGAAACCTGCATGCCAATGAAGTTGAAGTCGAGGTTCCCGGATTGTTAACCGACCAT ACCGTCTCTTCGATAGGACATGAATTCTATCGTGCATTCAGCGACAAATGGGAAAGCGAA TACACCGGCAATCTGACCATTAATGAAAGACCCAGTGCGCGTTGGGGAAGCTGGATCACC ATAACGGTAAATCAGGACGTTATTTTCCAGACCTTTTTATTTCCAATGAAAAGAGACTTC GAGAAAACCGTCGTCTTCGCATTAGCGCAAACAGAGGAAGCATTAAATCGCCGACAAATA GATCAAACGCTATTAAGTACGAGTGATTTAGCGCGTGATGAATTCTAAATGCGTGTTAAA CATGCAGTAGTGCTGCTCATGCTTTTTTCGCCATTAACCTGGGCTGGAAATATGACGTTC CAGTTCCGTAATCCTAACTTTGGTGGAAACCCCAATAACGGTTCCTTTTTATTGAATAGC GCCCAGGCGCAAAATTCATATAAAGACCCCGCTTATGATAACGATTTTGGTATCGAGACC CCCTCAGCGTTGGATAACTTTACGCAGGCTATTCAATCGCAAATTCTGGGCGGCTTGTTG ACCAATATTAATACCGGAAAACCAGGACGTATGGTGACCAATGATTTTATTATCGATATC GCTAATCGCGACGGACAGCTCCAGCTCAACGTCACGGACAGAAAAACGGGAAGAACCTCG ACCATCGAAGTGTCAGGTTTACAAACTCAGTCAACCGATTTTTAAATGCCGCGCTTACTT ATTTTGGTTGCCGTTTTATTGTTGAGCGGATGCTTAACTGCCCCGCCGAAACAAGCTGCG AAACCGACATTAATGCCCCGCGCACAAAGTTACAAAGATTTGACGCACTTACCTGCTCCC ACCGGTAAGATCTTTGTTTCGGTATATAACATTCAGGATGAAACGGGCCAATTTAAACCT TACCCGGCAAGTAACTTTTCCACGGCTGTGCCGCAGAGCGCCACCGCTATGTTGGTCACC GCGCTGAAAGATTCGCGCTGGTTTATCCCACTAGAACGACAAGGCTTACAGAATCTTTTG AATGAACGGAAAATTATTCGCGCAGCCCAGGAAAACGGCACCGTGGCGATGAATAACCGT ATCCCGCTTCAGTCGTTGACGGCGGCAAATATTATGGTGGAAGGTTCTATTATTGGTTAT GAAAGTAACGTCAAATCCGGCGGGGTCGGCGCAAGATATTTCGGTATTGGCGCCGATACG CAGTATCAGCTGGATCAGATTGCTGTCAACCTGCGCGTGGTTAACGTCAGTACGGGCGAG ATCCTTTCTTCGGTGAACACCAGTAAAACGATCCTTTCCTATGAAGTACAGGCAGGCGTG TTCCGTTTTATTGATTACCAGCGCTTACTGGAAGGCGAAATCGGCTATACCTCGAACGAA CCGGTGATGCTGTGTCTGATGTCAGCCATTGAAACCGGCGTTATCTTCCTCATTAATGAT GGTATCGATCGCGGACTGTGGGATTTGCAGAATAAAGCGGACAGGCAAAATGATATTCTG GTGAAATACCGTGAGCTGTCAGTACCGCCAGAATCCTGAATGTCTATTGCCGTAAATATG AATGACCCGACCAACACGGGCGTCAAAACGACGACCGGCAGCGGGTCGATGACCGGAAGC AACGCTGCCGATCTGCAAAGCAGTTTCCTGACCTTACTGGTCGCGCAATTGAAGAACCAG GACCCGACTAACCCATTACAAAATAATGAGTTAACGACACAGTTGGCGCAAATCAGTACC GTGAGCGGCATTGAAAAACTGAATACGACGCTGGGGGCTATTTCCGGGCAAATCGATAAT AGTCAGTCCCTACAGGCGACCACGCTGATTGGACATGGCGTTATGGTGCCTGGCACCACA ATTCTGGCGGGTAAAGGCGCGGAAGAAGGGGCCGTGACGTCCACGACGCCGTTTGGCGTG GAATTGCAACAGCCTGCGGACAAAGTGACGGCAACCATTACCGATAAAGATGGCCGGGTG GTACGGACGCTGGAGATCGGTGAGTTGCGAGCCGGGGTACACACCTTTACCTGGGATGGT AAGCAAACGGACGGAACAACGGTACCGAATGGTTCTTACAACATTGCGATTACCGCCAGC AATGGCGGGACGCAACTGGTGGCGCAGCCGCTGCAATTCGCTCTGGTACAGGGCGTGACG AAGGGCAGTAACGGCAACCTGTTGGATCTGGGTACCTACGGCACCACCACACTCGACGAA GTTCGGCAAATAATCTAAATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTGCGGCC ACCAACCTTGATGTTATCGGTAATAACATCGCCAACTCCGCCACCTATGGCTTTAAGTCC GGTACGGCATCATTTGCCGATATGTTCGCCGGTTCCAAAGTGGGGTTGGGCGTAAAAGTG GCGGGGATTACCCAGGATTTTACCGACGGTACGACAACGAACACCGGGCGCGGGCTGGAT GTCGCGATTAGCCAGAACGGTTTTTTCCGCCTGGTAGACAGCAACGGTTCCGTGTTCTAT AGCCGCAACGGCCAGTTCAAACTGGACGAGAACCGTAACCTGGTCAATATGCAGGGGATG CAGTTGACCGGCTATCCGGCCACCGGTACGCCGCCGACCATTCAGCAGGGGGCGAATCCT GCGCCGATCACCATTCCGAACACGCTGATGGCGGCGAAATCGACCACCACCGCGTCAATG CAGATCAACCTGAACTCAACGGACCCTGTACCGTCTAAAACGCCCTTTAGCGTGAGTGAT GCGGATTCGTATAACAAAAAAGGCACCGTCACCGTTTATGACAGCCAGGGTAATGCCCAT GACATGAACGTCTATTTTGTGAAAACCAAAGATAATGAATGGGCTGTGTACACCCATGAC AGCAGCGATCCTGCAGCCACTGCGCCAACAACGGCGTCCACTACGCTGAAATTCAATGAA AACGGGATTCTGGAGTCTGGCGGTACGGTGAACATCACCACCGGTACGATTAATGGCGCG ACAGCGGCCACCTTCTCCCTCAGCTTCCTTAACTCCATGCAGCAGAACACCGGGGCTAAT AACATCGTCGCCACCAATCAAAACGGCTATAAGCCTGGCGACCTGGTGAGCTACCAGATT AACAATGATGGCACCGTGGTTGGCAACTACTCCAACGAGCAGGAGCAGGTGCTGGGGCAG ATTGTGCTGGCTAACTTCGCCAACAACGAAGGTCTGGCATCCCAGGGCGATAACGTCTGG GCGGCGACGCAGGCCTCCGGGGTAGCGCTGCTGGGGACTGCCGGTTCCGGCAACTTCGGT AAGCTGACGAACGGCGCGCTGGAAGCCTCTAACGTGGATTTGAGTAAAGAGCTGGTGAAT ATGATCGTCGCGCAGCGTAACTACCAGTCGAATGCGCAGACCATCAAAACCCAGGACCAG ATCCTCAATACGCTGGTTAACCTGCGCTAAATGGATCACGCAATTTATACCGCCATGGGG GCGGCCAGCCAGACGCTTAACCAGCAGGCGGTAACGGCCAGCAACCTGGCTAATGCCTCA ACGCCGGGCTTTCGCGCGCAGCTTAACGCGCTACGCGCGGTGCCCGTTGATGGCCTCTCT TTAGCGACGCGCACGTTGGTTACGGCGTCGACGCCGGGGGCGGATATGACCCAGGGTCAG TTGGACTACACTTCCCGCCCGCTGGATGTTGCGTTACAGCAGGACGGCTGGCTGGTGGTG CAAGCGGCGGATGGCGCTGAAGGATATACCCGTAACGGGAATATCCAGGTGGGCCCGACC GGGCAGTTAACCATTCAGGGACATCCGGTTATCGGCGAAGGCGGCCCGATTACCGTTCCG GAAGGGTCGGAAATCACCATTGCGGCAGACGGCACGATCTCCGCGCTCAATCCCGGCGAC CCGCCAAACACGGTGGCGCCCGTTGGGCGGCTGAAGCTGGTCAAAGCGGAAGGCAATGAG GTGCAGCGGAGCGATGACGGTTTATTCCGCCTTACCGCCGAGGCACAGGCTGAACGCGGG GCGGTACTGGCCGCCGACCCGTCAATTCGCATTATGTCGGGCGTGCTGGAGGGCAGTAAC GTCAAGCCGGTTGAAGCCATGACCGACATGATCGCCAACGCACGTCGTTTTGAAATGCAG ATGAAGGTTATCACCAGCGTAGATGAGAACGAAGGGCGAGCTAACCAACTGCTGTCGATG AGTTAAATGATCAGTTCATTATGGATCGCCAAAACCGGTCTGGACGCGCAGCAAACCAAT ATGGATGTGATTGCCAATAACCTGGCAAACGTCAGCACCAATGGTTTTAAGCGTCAGCGC GCGGTATTTGAAGATCTGTTGTATCAGACCATCCGCCAGCCGGGCGCGCAGTCGTCCGAG CAGACGACGCTGCCTTCCGGGCTGCAAATCGGTACCGGCGTGCGTCCGGTCGCCACGGAG CGCCTGCACAGTCAGGGGAACCTGTCGCAGACCAACAACAGTAAAGATGTGGCGATTAAA GGGCAGGGCTTTTTCCAGGTCATGCTGCCGGACGGTACGTCTGCCTATACCCGCGACGGC TCTTTCCAGGTGGATCAGAATGGTCAACTGGTGACGGCGGGCGGTTTTCAGGTGCAGCCG GCAATCACCATTCCGGCCAACGCGTTAAGCATCACGATTGGCCGCGACGGCGTGGTCAGC GTTACCCAGCAAGGGCAGGCCGCGCCGGTTCAGGTCGGGCAGCTTAACCTGACCACCTTT ATGAACGACACCGGTCTGGAAAGCATCGGCGAGAACCTCTATATCGAAACGCAATCGTCC GGCGCGCCGAACGAAAGCACGCCGGGGCTCAACGGCGCGGGGTTGTTGTATCAAGGGTAT GTCGAAACGTCGAACGTTAACGTGGCGGAAGAGCTGGTGAACATGATTCAGGTTCAACGC GCCTATGAAATTAACAGTAAAGCAGTATCGACGACCGATCAGATGCTGCAGAAACTGACG CAACTCTAAATGGCCCTGATGGTCGCGACGCTGACAGGATGCGCCTGGATACCCGCTAAA CCGCTCGTGCAGGGGGCGACCACGGCGCAGCCGATACCTGGCCCGGTACCGGTGGCGAAT GGCTCCATATTTCAGTCTGCGCAGCCGATTAATTATGGCTATCAGCCGCTTTTTGAAGAT CGTCGACCGCGTAATATCGGCGATACGCTCACGATTGTGTTACAGGAAAACGTCAGCGCC AGTAAAAGCTCGTCGGCAAATGCCAGCCGCGACGGCAAAACCAGCTTTGGTTTTGATACG GTACCGCGTTATCTGCAGGGATTATTCGGTAATTCCCGCGCGGATATGGAGGCCTCCGGC GGCAACTCTTTTAATGGTAAAGGCGGCGCGAATGCCAGCAATACCTTTAGCGGCACGCTG ACCGTGACCGTCGATCAGGTTCTGGCCAATGGCAATTTACACGTCGTGGGGGAAAAACAG ATCGCGATTAATCAGGGAACGGAATTCATCCGCTTCTCCGGCGTGGTAAATCCACGCACC ATCAGCGGTAGCAACTCTGTTCCCTCGACACAGGTGGCGGATGCGCGGATTGAATATGTC GGGAACGGCTATATTAACGAAGCGCAAAATATGGGCTGGCTGCAACGTTTCTTCCTTAAT TTGTCGCCGATGTAAGTGTTTAAAGCTCTTGCAGGAATCGTTCTGGCACTGGTTGCCACT CTGGCGCACGCCGAGCGTATCCGGGATCTGACCAGTGTCCAGGGAGTACGGGAAAACTCG CTGATCGGCTACGGGCTGGTGGTCGGGCTGGACGGTACGGGCGACCAGACGACCCAGACG CCATTTACCACCCAGACGCTGAATAACATGCTGTCACAACTGGGGATTACGGTCCCCACC GGCACCAATATGCAGTTGAAAAACGTGGCGGCGGTGATGGTGACGGCGTCGTATCCGCCT TTTGCGCGACAGGGACAAACGATCGATGTCGTCGTTTCCTCAATGGGGAACGCTAAAAGT CTGCGTGGCGGGACGTTATTAATGACGCCGTTAAAAGGGGTGGACAGCCAGGTGTATGCT CTGGCGCAGGGCAATATTCTGGTCGGCGGCGCGGGCGCTTCCGCAGGCGGCAGTAGCGTG CAGGTTAACCAGCTTAATGGCGGGCGCATCACTAATGGCGCGATTATCGAACGCGAGTTG CCGACTCAGTTCGGCGCTGGCAACACCATTAATCTGCAATTGAACGACGAAGATTTTACG ATGGCGCAGCAAATTACCGACGCCATCAACCGCGCCCGCGGTTACGGCAGCGCCACTGCG CTTGATGCGCGAACGGTACAGGTACGCGTGCCCAGCGGCAACAGCTCGCAGGTGCGTTTT CTGGCGGACATTCAAAATATGGAAGTCAACGTGACGCCGCAGGATGCAAAAGTCGTGATC AACTCGCGTACCGGTTCGGTGGTCATGAATCGGGAAGTCACGCTGGATAGCTGCGCTGTG GCGCAGGGCAATTTGTCAGTGACAGTCAATCGCCAACTCAACGTCAACCAGCCGAATACG CCATTTGGCGGCGGGCAGACCGTGGTGACGCCACAGACTCAGATAGATTTGCGTCAGAGC GGCGGATCGCTACAGAGCGTGCGTTCCAGCGCCAATCTGAACAGCGTAGTGCGCGCGCTG AATGCGCTTGGCGCGACGCCGATGGATCTGATGTCGATTTTGCAGTCCATGCAGAGCGCG GGCTGTCTACGCGCCAAACTGGAAATCATCTGAATGATCGGAGACGGTAAATTGCTGGCC AGCGCGGCCTGGGATGCGCAATCTCTGAACGAACTGAAAGCGAAAGCGGGCCAGGACCCG GCGGCGAATATCCGTCCTGTGGCCCGTCAGGTGGAAGGGATGTTTGTGCAGATGATGCTG AAAAGTATGCGCGAGGCTTTACCCAAAGATGGTTTATTCAGCAGCGATCAGACGCGTCTG TATACCAGCATGTATGACCAGCAGATCGCCCAGCAGATGACCGCCGGTAAGGGATTGGGG CTGGCGGATATGATGGTTAAACAGATGACGGGCGGGCAGACGATGCCTGCAGATGATGCG CCGCAAGTACCGCTTAAATTCTCCCTGGAGACGGTAAACAGCTATCAAAATCAGGCGCTG ACCCAACTGGTGCGCAAAGCCATACCGAAAACGCCGGACAGCAGCGATGCGCCGCTCTCC GGCGACAGTAAAGACTTTCTGGCCCGGCTTTCGCTCCCGGCGAGGCTGGCCAGCGAACAA AGCGGGGTGCCGCATCATCTGATTCTGGCGCAGGCGGCGCTGGAGTCCGGCTGGGGGCAG CGGCAAATCCTGCGGGAGAATGGCGAACCCAGCTATAACGTATTTGGCGTGAAAGCGACC GCCAGTTGGAAAGGGCCGGTGACGGAAATCACCACCACTGAATACGAAAATGGCGAAGCG AAAAAAGTGAAAGCGAAATTCCGCGTCTATAGCTCGTATCTGGAGGCGTTATCGGATTAT GTCGCGCTGTTAACGCGTAACCCACGCTACGCTGCCGTGACCACTGCCGCCACGGCAGAG CAGGGCGCAGTGGCTCTGCAAAACGCCGGATACGCCACTGACCCGAATTACGCGCGTAAA TTGGCCAGCATGATTCAGCAGTTGAAAGCGATGAGTGAAAAGGTCAGCAAAACCTACAGC GCGAATCTCGACAATCTCTTTTAAATGTCCAGCTTGATTAATCACGCCATGAGCGGACTT AACGCCGCGCAGGCCGCGTTAAATACGGTCAGTAATAACATCAACAATTATAACGTTGCG GGTTATACCCGGCAGACAACTATTCTGGCGCAGGCAAACAGTACGTTAGGGGCTGGCGGC TGGATAGGTAATGGCGTTTACGTTTCAGGCGTACAGCGCGAATATGATGCGTTTATCACT AATCAGCTACGCGGCGCGCAAAACCAGAGCAGCGGCTTAACCACGCGCTATGAACAAATG TCGAAAATCGACAACCTGCTGGCCGATAAATCCAGCTCACTGTCTGGCTCGCTGCAGAGT TTTTTTACCAGCCTGCAAACGTTAGTCAGTAATGCGGAAGATCCTGCGGCGCGTCAGGCG CTGATTGGTAAAGCGGAAGGGCTGGTAAACCAGTTCAAAACCACCGATCAGTATCTGCGC GATCAGGATAAACAGGTCAATATCGCGATTGGCTCCAGCGTGGCGCAAATCAACAATTAC GCGAAGCAGATAGCTAACCTGAACGATCAAATCTCCCGTATGACGGGCGTAGGCGCGGGC GCATCGCCGAACGACCTGCTCGATCAACGTGATCAGTTGGTTAGCGAGCTTAACAAGATC GTTGGCGTCGAGGTGAGTGTACAGGACGGCGGCACCTATAACCTGACGATGGCCAATGGC TATACGCTGGTGCAGGGGTCGACGGCGCGTCAGTTGGCGGCGGTTCCCTCCAGCGCCGAC CCGACGCGAACGACTGTCGCTTATGTCGATGAGGCCGCCGGTAACATCGAAATTCCGGAA AAGTTGCTGAACACCGGTTCGCTCGGCGGGCTACTGACGTTCCGTTCTCAGGATCTGGAT CAGACTCGTAATACGCTGGGCCAGTTGGCGTTGGCGTTTGCCGATGCGTTTAACGCGCAG CATACCAAAGGTTATGACGCCGACGGCAATAAAGGGAAAGACTTCTTTAGCATTGGCTCG CCGGTGGTATATAGCAACAGTAATAATGCCGATAAAACGGTATCGCTAACCGCTAAGGTG GTCGACAGCACGAAGGTTCAGGCGACGGATTATAAGATTGTTTTTGACGGTACAGACTGG CAGGTTACTCGCACTGCGGATAACACCACCTTCACGGCAACAAAAGATGCTGACGGAAAA CTGGAGATTGACGGTCTGAAAGTGACGGTAGGGACTGGCGCACAGAAAAACGACAGTTTT CTTCTCAAGCCGGTCAGCAATGCTATCGTCGACATGAACGTTAAAGTGACAAATGAAGCC GAGATTGCGATGGCGTCTGAGTCAAAACTCGATCCTGATGTGGATACCGGCGACAGCGAT AACCGCAATGGTCAGGCATTGCTGGACTTACAAAACAGCAATGTAGTGGGCGGCAACAAA ACCTTTAACGATGCTTACGCCACGTTGGTCAGCGATGTGGGTAACAAAACGTCAACGCTG AAAACCAGCAGCACCACGCAGGCGAATGTGGTTAAACAGCTTTATAAACAGCAACAGTCG GTTTCCGGCGTTAACCTCGACGAAGAGTACGGCAATTTGCAGCGTTATCAGCAGTATTAT CTGGCGAATGCGCAAGTATTGCAGACCGCGAATGCGCTGTTTGATGCGTTATTGAATATT CGCTAAATGCGTATCAGTACCCAGATGATGTACGAACAAAATATGAGCGGCATCACTAAT TCTCAGGCCGAATGGATGAAGCTGGGCGAGCAGATGTCTACCGGTAAGCGCGTTACCAAC CCATCTGACGATCCGATCGCCGCGTCGCAGGCGGTAGTACTCTTTCAGGCGCAGGCGCAG AATAGCCAGTACGCCCTGGCGCGTACGTTTGCCACCCAAAAAGTGTCGCTGGAAGAAAGC GTACTCAGTCAGGTGACGACGGCGATTCAAACCGCGCAGGAAAAAATCGTCTATGCCGGA AACGGCACGTTAAGCGACGATGACCGCGCGTCGCTGGCGACGGATTTACAGGGGATCCGC GATCAGCTGATGAACCTGGCAAACAGCACTGACGGCAATGGTCGCTATATCTTTGCCGGG TATAAAACGGAAGCGGCGCCATTCGACCAGGCGACAGGTGGTTATCATGGCGGCGAGAAA AGTGTTACCCAGCAGGTGGATTCCGCACGCACGATGGTAATTGGCCATACGGGAGCGCAA ATTTTTAATAGCATCACCAGCAATGCGGTGCCGGAACCGGATGGCTCGGACTCCGAAAAG AATCTGTTTGTCATGCTCGATACGGCAATTGCCGCGCTCAAGACCCCGGTGGAAGGCAAT GACGTGGAAAAAGAAAAAGCCGCTGCCGCCATTGATAAAACCAATCGCGGCTTAAAAAAT TCGCTTAATAACGTCCTGACCGTTCGTGCGGAACTGGGAACGCAACTGAGCGAACTCAGT ACGCTGGATTCACTGGGAAGCGACCGTGCGCTGGGACAGAAGCTACAGATGAGCAACCTG GTAGATGTGGACTGGAACTCGGTCATTTCCTCCTACGTCATGCAACAGGCGGCATTACAG GCGTCCTATAAAACGTTTACCGACATGCAGGGAATGTCGCTTTTCCAGTTGAACCGGTAA ATGGAGATAATTTTTTATCACCCGACATTTAACGCCGCCTGGTGGGTAAATGCGCTGGAG AAGGCTCTCCCACATGCGCGCGTTCGTGAATGGAAGGTCGGTGATAACAACCCCGCAGAC TATGCGCTTGTATGGCAGCCCCCGGTTGAAATGCTGGCCGGAAGACGCTTAAAAGCCGTC TTTGTGCTGGGCGCGGGGGTGGATGCAATTCTGAGTAAATTAAATGCGCATCCGGAAATG CTGGACGCCTCCATTCCTCTATTCCGTCTGGAAGATACCGGAATGGGCCTGCAAATGCAG GAGTATGCCGCCAGCCAGGTATTACACTGGTTCCGTCGTTTCGATGATTATCAGGCGCTG AAAAATCAGGCGCTATGGAAACCGTTGCCGGAATATACCCGCGAAGAGTTTAGCGTCGGT ATCATAGGCGCAGGGGTACTGGGCGCAAAAGTGGCAGAAAGTCTACAGGCGTGGGGGTTC CCGTTACGTTGCTGGAGTCGTAGCCGCAAATCCTGGCCTGGCGTGGAAAGTTATGTAGGG CGTGAAGAACTGCGCGCTTTCCTGAACCAGACGCGGGTGCTGATTAATCTGCTGCCGAAT ACGGCCCAAACGGTAGGAATTATTAATAGCGAATTGTTGGATCAATTGCCGGATGGCGCT TACGTGCTGAATCTCGCGCGCGGCGTTCATGTTCAGGAGGCGGATCTGCTGGCTGCGCTT GATAGCGGTAAGCTAAAAGGCGCGATGTTGGATGTCTTTAGCCAGGAACCGTTACCGCAG GAAAGTCCATTATGGCGCCATCCGCGAGTCGCCATGACGCCGCACATTGCGGCAGTCACC CGTCCGGCGGAAGCCATCGATTATATTAGCCGCACCATTACCCAGCTGGAGAAGGGAGAG CCGGTGACGGGGCAGGTGGATCGGGCGAGAGGATATTGAATGTCCGTAATCAAGAAAAAT ATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATCCATTCTGCGGTAGGGCAACAA ACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATTGTTGAGCCACTGTGCGATATT TCTACTCACGCCGAAAATATTGATTTAACCTGCCTACGCGAAGGTAAAAAGCAAATGCAC CGGATAGACCTTCGGCAGGCATCTGGATTACCGCAGGATATTCAGTCCATTGCGACGGTA CGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTGATGAATATTGAGTACCGTTAA ATGGCAAACCATCGTGGCGGTTCCGGTAATTTTGCGGAAGACCGCGAAAGAGCATCAGAA GCAGGTCGTAAAAGTGGTCAGCACAGCGGGGGCAATTTTAAGAATGACCCGCAGCGTGCA TCCGAAGCAGGCAAAAAAGGGGGCAAAAGCAGTAACCGTAATCGCTAGATGGTAATGTCC GCACCAGGACACATTGTTTACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGT GGTGGTCTTGTCATCTTAAAAGCTCTCATCATTTCCCTTACTGTCCATACCCATGACGCC ATATGTGGTGCGCGTAGCCGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAG GAAGCCAACCCTCAGATGTGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTAT ACCTACAACTCAAGGTGCTATCCATGGGAAGACAAAAAGCAGTGAATGAAACGAATTTTC CTTACCTGCGCGGCGTTGTTGTTCAGCAGTCAGGCGTTGGCCGATGAGTGTGCCAGCGCC AGTACGCAGCTGGAAATGAATCGCTGCGCCGCCGCGCAATACCAGGCGGCAGATAAAAAG CTGAACGAAACCTATCAAAGCGCGATTAAGCGTGCGCAACCGCCGCAGCGTGAGCTATTG CAAAAAGCGCAGGTGGCATGGATTGCCCTGCGCGACGCCGATTGCGCGCTGATTCGCTCA GGTACGGAGGGCGGCAGCGTTCAACCCATGATCGCCAGCCAGTGCCTGACCGATAAAACG AACGAACGCGAAGCGTTTTTAGCCTCGCTGCTGCAATGTGAAGAGGGTGATTTGAGCTGC CCACTGCCGCCAGCCGGTTAAGTGCGTATATTCGCGGTGAGCATAATGGTGATTACCCTG AGCGGCTGCGGCAGTATTATCAGCAGAACGATCCCCGGACAAGGACACGGCAACCAGTAT TACCCTGGCGTGCAGTGGGATATGCGTGATTCCGCATGGCGCTATATCACTATCCTCGAT CTGCCCTTCTCACTGATCTTCGATACACTGCTACTGCCGCTCGATATTCACCACGGGCCT TATGAGTAAATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGACGAA AGCATGGGCAGTAACGATGTGCATTATCAGTCGTTTGCTCGTATGGCGGATTTCTTTGGT CGTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTCTTGATACCGGG CAGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTGCTA ACGCCGCCCTCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTTCTG ACGGTACGCGAAGAGCTGGTTTGGCCGCTGCTGGAAGTGCTTTATCCCGGCACCAGAGAG GCCTTCGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACGAGCTGGCGGCG CTCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGCGAA CATACCTTGGTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAGCTG GACGATCATGCCGCAACCGGGATGCGCGGTGAACTGAAACTTTTTCAGCGCTTTACCCTG TTAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCTGTGAGTTGCAT ATTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAACGC CTGATTTTTGATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAATGCT GTCAACGAGATCGCCTGGCAATTAGGTTTTAAAGATCCGGCTTATTTCGCCCGTTTCTTT AATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTCCTTCTTTTCTC AACTAAATGGGACGCACACCGGATTACAAAGCCGCCTTTGGCTGCGCTCTGGGCGCTAAC CCAGCCTTCTACGGCCAGTTTGAGCAGAACGCCCGTAACTGGTACACCCGTATTCAGGAG ACCGGCCTGTACTTTAACCATGCAATCGTCAACCCGCCCATTGACCGCCACAAACCTGCC GACGAAGTGAAAGACGTCTATATCAAGCTGGAGAAAGAGACGGACGCCGGGATTATTGTC AGCGGGGCGAAAGTTGTCGCCACTAACTCCGCCCTGACTCACTACAACATGATTGGTTTC GGCTCAGCCCAGGTGATGGGCGAAAACCCGGATTTTGCTCTGATGTTTGTCGCGCCAATG GATGCCGAAGGCGTAAAACTTATTTCGCGCGCCTCGTATGAAATGGTCGCGGGCGCGACG GGCTCGCCGTTTGATTATCCCCTCTCCAGCCGTTTTGATGAAAACGATGCCATTCTGGTG ATGGACAAGGTGCTGATCCCGTGGGAAAACGTATTAATTTACCGTGATTTCGATCGTTGT CGTCGCTGGACGATGGAAGGCGGCTTTGCCCGTATGTATCCACTGCAAGCCTGTGTTCGT CTGGCGGTAAAACTTGATTTCATTACCGCGCTGCTGAAAAAATCGCTCGAATGTACGGGT ACCGTAGAGTTCCGGGGCGTGCAGGCCGATCTCGGCGAAGTCGTGGCCTGGCGCAATATG TTCTGGGCATTGAGCGATTCTATGTGTTCTGAAGCAACCCCGTGGGTAAACGGCGCCTGG CTACCGGACCACGCCGCGCTGCAAACCTATCGTGTGATGGCCCCAATGGCCTACGCGAAA ATTAAAAATATTATTGAACGTAACGTTACCAGCGGCCTGATTTACCTGCCTTCCAGCGCC CGCGATCTGAATAATCCGCAAATCGACCAGTACCTGGCGAAATACGTACGCGGCTCTAAC GGAATGGACCATGTTGAACGTATCAAAATTCTTAAATTGATGTGGGATGCCATCGGCAGC GAGTTTGGCGGTCGCCATGAGCTGTACGAGATTAACTACTCGGGCAGCCAGGATGAAATT CGTCTGCAGTGTCTGCGTCAGGCCCAGAGCTCCGGCAATATGGATAAGATGATGGCAATG GTCGATCGCTGCCTCTCCGAATACGATCAGAATGGCTGGACGGTTTCGCATTTGCACAAT AACGACGACATCAATCAACTGGATAAGCTGCTGAAATAAATGCAAGTAGATGAACAACGT CTGCGTTTTCGCGATGCGATGGCAAGTCTGGCGGCAGCGGTCAACATCGTAACCACGGCG GGTCACGCCGGACGCTGCGGTATCACCGCAACAGCGGTTTGCTCAGTCACTGATACGCCG CCCTCCGTGATGGTATGTATTAATGCCAATAGCGCCATGAACCCCGTTTTTCAGGGCAAC GGCAGGCTGTGCATTAATGTACTTAACCATGAGCAGGAGCTGATGGCGCGCCACTTTGCC GGTATGACGGGGATGGCGATGGAGGAGCGTTTTCACCAGCCATGTTGGCAAAACGGGCCG CTGGGCCAGCCGGTACTTAACGGCGCGCTGGCCAGTCTTGAAGGCGAGATCAGCGAGGTA CAAACCATTGGCACGCATCTGGTGTATCTGGTGGCGATCAAAAATATTATTCTTAGCCAG GAGGGGCATGGCCTGATTTATTTCAAACGCCGTTTTCATCCGGTCAGACTTGAGATGGAA GCGCCTGTTTAAATGAAGGGTACTGTTTTCGCCGTTGCGTTAAACCATCGCAGCCAGCTT GATGCCTGGCAAGAGGCTTTCTCTCAGCCTCCCTATAATGCGCCGCCTAAAACCGCAGTG TGGTTCATCAAGCCGCGTAATACGGTGATTCGTCACGGCGAACCCATTCCTTATCCGCAG GGAGAAAAGGTACTGAGCGGCGCGACAGTGGCGCTCATTGTGGGGAAAACCGCCAGCCGG ATACGCCCTGAAGCGGCGGCGGACTATATCGCCGGGTATGCGCTGGCTAACGAGGTCAGC CTGCCGGAAGAGAGCTTTTATCGCCCGGCGATTAAAGCGAAATGTCGCGATGGCTTTTGC CCGCTGGGTGAAATGGCGCCGCTGAGTGATGTGGATAATCTCACCATTATCACTGAAATC AACGGACGAGAAGCGGACCACTGGAATACTGCCGATTTACAGCGTAGCGCCGCACAACTG CTTAGCGCGTTAAGTGAGTTCGCTACACTTAACCCTGGCGATGCGATCTTACTTGGTACG CCGCAGAATCGCGTTGCGCTGCGTCCCGGCGATCGGGTGCGTATTCTGGCGAAAGGTTTA CCCGCGCTGGAAAATCCGGTTGTCGCAGAAGATGAATTCGCCCGCCACCAGACGTTTACG TGGCCGCTGTCAGCGACGGGAACGTTATTTGCGCTGGGGTTGAACTACGCCGATCACGCC AGCGAGCTGGCATTTACGCCGCCGAAAGAGCCGCTGGTATTTATCAAAGCGCCAAACACC TTTACCGAACATCACCAAACGTCGGTGCGCCCGAACAACGTCGAATATATGCACTACGAA GCCGAGCTGGTCGTGGTGATTGGCAAAACGGCGCGTAAGGTGAGCGAAGCCGAAGCCATG GAGTATGTGGCCGGTTACACCGTCTGTAACGACTACGCGATCCGCGACTATCTGGAAAAC TACTACCGTCCGAATCTGCGGGTAAAAAGCCGCGACGGCCTGACGCCGATAGGCCCGTGG ATTGTGGATAAAGAGGCGGTTTCTGATCCGCACAACCTGACGTTACGCACCTTTGTCAAC GGTGAGCTGCGGCAGGAAGGGACGACCGCCGATCTGATCTTCAGCATCCCGTTCCTGATT TCTTATCTGAGCGAATTTATGACGTTGCAACCGGGCGACATGATTGCCACCGGTACGCCG AAAGGGCTGTCCGATGTGGTGCCGGGGGATGAAGTTGTCGTTGAAGTAGAAGGCGTGGGT CGCCTGGTTAACCGAATCGTCAGTGAGGAGAGCGCAAAATGAATGAAAAATGCTTTCAAA GACGCGTTAAAAGCGGGGCGCCCGCAAATCGGTTTGTGGCTGGGGCTTGCCAACAGTTAC AGCGCTGAACTGTTAGCGGGCGCCGGCTTCGACTGGCTACTGATTGACGGTGAACACGCG CCAAACAACGTGCAGACGGTGTTGACCCAGTTGCAGGCGATTGCGCCTTATCCCAGCCAG CCGGTGGTGCGTCCGTCATGGAACGATCCGGTACAGATTAAGCAACTGCTCGACGTCGGC GCGCAAACGCTGCTGATACCGATGGTGCAGAATGCCGATGAAGCGCGAAACGCCGTGGCG GCTACGCGTTATCCGCCTGCCGGTATTCGCGGCGTGGGCAGCGCGCTGGCGCGGGCATCG CGCTGGAATCGCATTCCGGACTATCTCCACCAGGCCAACGACGCCATGTGCGTACTGGTG CAGATTGAAACGCGTGAGGCGATGAGCAATCTGGCGTCAATTCTCGACGTGGATGGCATT GACGGCGTGTTTATTGGCCCGGCGGATCTCAGCGCCGATATGGGCTTTGCCGGCAATCCG CAGCACCCGGAAGTGCAGGCGGCGATTGAGAACGCCATCGTGCAGATACGCGCGGCGGGG AAAGCGCCGGGGATTCTGATGGCCAATGAAGCACTGGCGAAACGTTATCTGGAACTGGGG GCGCTATTTGTCGCCGTCGGCGTTGACACCACGCTGCTGGCGCGCGGAGCGGAGGCGCTG GCGGCGCGCTTTGGCGCAGAAAAAAAACTGTCCGGTGCGTCCGGCGTCTATTAAATGCAT GATTCATTAACCATCGCCTTGCTTCAGGCGCGCGAAGCGGCAATGACCTATTTCCGCCCC ATCGTTAAAAGCCACAATCTGACCGACCAGCAATGGCGCATTGTGCGAATCCTGGCCGAT AGCCCCTCTATGGATTTTCACGAGCTGGCCTTTCGTACCTGTATTTTGCGTCCAAGTCTG ACCGGAATATTGACGCGCATGGAGCGAGACGGACTGGTGTTGCGACTCAAGCCGGTTAAC GATCAGCGTAAGTTATATGTCATGTTGACGGAGCAGGGACAAACGTTGTACGCCCGTGCC CGGAGCGAGGTAGAAGAGGCTTATCGAAAAATTGAGGCCGATTTCACGCCCGAAAAAACA CAGCAATTGATGCTGCTGCTGGACGATCTTATTGCTCTGGGGCGCCAGCATCCTGATAGC GAAGCGGAAGCATAGATGAGCGACACATCATCTGCACTTCCGGAAAGCCCCGAGTCTGTC GGTTCGCACAACGCGCTCAGCACGGGTCAACAAACCGTCATAAATAAACTGTTCCGCCGA CTGATCGTATTTTTATTCGTGTTGTTTATCTTCTCGTTTTTAGACCGTATCAACATCGGT TTTGCCGGGTTGACGATGGGGCAGGATCTGGGGTTAAGCGCCACCATGTTTGGTCTTGCC ACGACGCTGTTTTACGCCACCTACGTCATTTTCGGCATTCCCAGCAACGTGATGTTGAGC ATCGTCGGCGCCCGCCGCTGGATTGCGACCATTATGGTGCTATGGGGCATTGCATCTACC GCCACGATGTTCGCGGTGGGACCGAAAAGCCTGTATGTGCTGCGAATGCTGGTGGGCATT ACCGAAGCGGGCTTTTTGCCAGGAATATTGCTCTATTTAACCTACTGGTTCCCGGCATTT TTCCGCGCCCGCGCCAACGCATTATTTATGATTGCCATGCCGGCCACTACCGCGTTGGGG TCAATTGTCTCCGGCTATATTTTATCGCTGGACGGCATATTCAATCTGCATGGATGGCAG TGGTTATTCCTGTTGGAAGGATTTCCGTCAGTTTTGTTAGGCATTATGGTCTGGTTTTAC CTGGATGATACCCCGGCAAAAGCCAAATGGCTGACGGCAGAGGATAAAAAATGTTTGCAG GAGATGATGGATAATGATCGCCTGACGCTGGTTCAGCCTGAGGGGGCCATCAGCCATAAC GCCATGCAGCAGCGTAGCCTGTGGCGCGAAGTATTCACGCCAATTGTACTGATGTATACG CTGGCCTATTTTTGCCTTACCAATACGCTTAGCGCCATTAGTATCTGGACGCCGCAAATC CTGAAAAGTTTTAATGAAGGCAGCAGCAATATCACCATCGGCCTGCTGGCGGCGATCCCG CAGATTTGTACTGTTCTGGGCATGATTTACTGGAGCCGCCATTCGGACAAACATCAGGAG CGTAAACACCACACTGCGTTACCGTTCCTGTTTGCCGCCGCGGGCTGGCTGCTGGCGTCG GCGACCGACCGTAACCTGATCCAGCTCCTGGGGATCGTGATGGCATCCACGGGTTCCTTT AGCGCGATGGCGATCTTCTGGACCACGCCGGATCAGTCGATCAGTTTACGCGCCAGGGCG ATAGGCATTGCGGTCATCAATGCCACCGGCAATATTGGCTCCGCGCTCAGCCCGGTTATG ATTGGCTGGCTAAAAGATATCACTGGTAGCTTCAATAGCGGACTCTGGTTTGTCGCTTCT CTGTTAGTCGTCGGCGCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCGCGC GCCACCCCTTGAATGGGCAAGTTAGCGTTAGCAGCAAAAATTACCCACGTGCCGTCGATG TATCTTTCTGAACTGCCAGGAAAAAATCACGGTTGTCGTCAGGCAGCCATTGATGGGCAT ATTGAAATTGGCAAGCGTTGCCGCGAAATGGGCGTTGACACCATTATCGTATTCGACACC CACTGGCTGGTGAATAGCGCTTACCACATTAATTGTGCCGACCATTTCCAGGGCGTCTAT ACCAGCAACGAATTGCCGCACTTTATTCGCGACATGACCTATGACTATGACGGTAATCCG GCGCTCGGCCATCTGATCGCCGACGAGGCGGTCAAACTGGGCGTGCGCGCCAAAGCGCAC AACATCCCGAGCCTGAAGCTGGAGTATGGCACGCTGGTGCCGATGCGCTACATGAACAGC GACAAGCACTTCAAAGTGGTCTCCATCTCGGCGTTCTGCACTGTGCATGATTTTGCCGAC AGCCGCAAACTGGGCGAAGCCATTCTCAAGGCGATTGAGAAATATGACGGTACCGTAGCG GTATTCGCCAGTGGTTCTCTGTCGCACCGTTTTATTGACGACCAACGGGCGGAAGAGGGG ATGAACAGCTACACCCGCGAGTTCGATCATCAAATGGACGAGCGCGTGGTCAAGCTGTGG CGCGAAGGCAAATTCAAGGAGTTTTGCACCATGTTGCCGGAGTACGCCGACTACTGCTAC GGCGAAGGCAACATGCACGACACGGTCATGCTACTGGGAATGCTGGGGTGGGACAAATAC GACGGCAAGGTGGAGTTCATCACCGACCTGTTCGCCAGCTCCGGTACCGGCCAGGTAAAC GCTGTTTTCCCGCTGCCTGCGTAAATGAAGAAAATAAATCATTGGATTAACGGCAAAAAC GTTGCAGGTAACGACTACTTCCAGACCACTAACCCGGCGACCGGTGATGTGCTGGCGGAA GTAGCCTCCGGCGGTGAAGCAGAAGTGAACCAGGCTGTCGCGGCGGCAAAAGAGGCGTTC CCGAAATGGGCCAACCTGCCGATGAAAGAGCGCGCGCGCCTGATGCGCCGCCTTGGCGAC CTGATTGACCAGCATGTGCCGGAAATCGCGGCGATGGAAACCGCCGACACCGGCCTGCCT ATTCACCAGACTAAAACGTGCTGAGTGCTGATCCCGCGCGCCTCGCATAACTTCGAATTC TTCGCCGAAGTGTGCCAGCAGATGAACGGCAAGACCTATCCGGTTGACGATAAAATGCTC AATTATACGCTGGTGCAGCCCGTCGGCGTCTGCGCGCTGGTGTCGCCGTGGAACGTGCCG TTTATGACCGCGACTTGGAAAGTTGCGCCGTGCCTGGCGCTGGGTAACACCGCGGTGCTC AAAATGTCCGAGCTGTCGCCGCTGACTGCCGACAGGCTGGGCGAGCTGGCACTGGAGGCA GGAATTCCGGCAGGCGTGCTGAACGTGGTGCAGGGCTACGGCGCGACGGCGGGCGATGCG CTGGTACGCCACCATGACGTGCGTGCGGTGTCGTTTACCGGCGGTACCGCCACCGGTCGC AATATCATGAAAAATGCCGGGCTGAAAAAATACTCGATGGAGCTGGGCGGCAAATCGCCG GTGCTGATTTTTGAAGACGCCGACATTGAGCGCGCGCTGGACGCCGCGCTGTTCACCATC TTCTCGATCAACGGCGAACGCTGCACCGCTGGGTCGCGCATCTTTATCCAGCAGAGCATT TACCCTGAGTTCGTGAAGCGCTTTGCCGAACGCGCGAATCGCCTGCGTGTCGGCGATCCG ACCGACCCGAACACCCAGGTCGGCGCGCTGATTAGCCAACAGCACTGGGAGAAAGTCTCC GGTTATATCCGCCTCGGCATTGAAGAGGGGGCAACGCTGCTGGCGGGCGGTGCGGAAAAA CCCACTGACCTGCCTGCGCATCTGAAAGGCGGTAACTTCCTGCGCCCAACCGTGCTGGCC GATGTCGACAACCGTATGCGCGTTGCGCAGGAAGAGATCTTTGGGCCGGTCGCCTGCCTG CTGCCATTCAAAGACGAAGCGGAAGGGTTACGTTTGGCGAACGATGTGGAATACGGTCTG GCCTCTTATATCTGGACCCAGGACGTGAGCAAAGTGTTGCGCCTGGCGCGTGGGATTGAA GCCGGCATGGTCTTCGTCAACACCCAGAACGTCCGCGACCTGCGCCAGCCGTTCGGCGGC GTGAAAGCCTCCGGTACCGGGCGCGAAGGCGGCGAATATAGCTTCGAAGTGTTTGCGGAA ATGAAAAACGTCTGCATCTCAATGGGCGACCATCCTATCCCAAAATGGGGAGTTTGAATG CCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGCCTG TTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATCCGC AGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTT GTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGC GAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTG GCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTA CACGCGTTATTTAAATAGATGCTCGATAAACAGACCCATACCCTGATCGCTCAGCGACTT AATCAGGCTGAAAAACAGCGTGAACAGATTCGCGCAGTGTCGCTGGATTATCCCAACATC ACTATTGAAGATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATTGCCGAAGGG CGCACGCTCAAAGGCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAA ATCAGCGAACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGAGAT ATCCCCACCGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCG AAACCGCTGCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTG ATTCCGGCGCTGGAACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGC CCGCGCAAAGTGTTCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGT GGTCGCCCCATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGC AACGGCGTGATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGC GTGGCGTGGCTGGCGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATC ATCCTCGGCGGCTCGTTCACCCGCCCGGTGCCGGCGCGCAAGGGCGACACCTTCCATGTC GATTACGGCAACATGGGCGCGATCAGTTGCCGGTTTGTGTAAATGAGCTCTGTACCCGCG CCGCGTGAATATTTTCTTGACTCTATCCGCGCATGGCTGATGTTGTTAGGGATTCCCTTT CATATCTCGTTGATCTATTCCACTCACAGTTGGCATGTCAATAGCGCCGCGCCATCGTGG TGGCTAACCCTGTTTAACGATTTTATCCACGCTTTTCGTATGCAGGTGTTTTTTGTTATT TCTGGTTATTTTTCGTACATGTTATTTTTACGTTATCCATTAAAACACTGGTGGAAAGTA CGGGTAGAACGTGTGGGTATTCCCATGCTTACCGCAATCCCTTTGCTTACCTTGCCGCAA TTTATCCTGTTGCAATATGTCAAAGAGAAAACAGAGAACTGGCCTACACTCTCTGCCTAT GAAAAATATAATACGTTAGCGTGGGAACTCATTTCACATCTGTGGTTTTTACTGGTGCTG GTGATATTAACCACCGTCAGCATCGGGATTTTTACCTGGTTCCAAAAAAGGCAGGAAACA AGCAAGCCTCGTCCCGCCGCTATTTCGCTGGCCAAACTTTCGCTTATTTTTTTCCTGCTG GGGGTGGCGTACGCTGCTATCAGGCGCATTATATTCATCGTATATCCGGCAATCCTCAGT GACGGCATGTTCAATTTTATTGTGATGCAAACGCTATTTTATGTGCCGTTTTTTATTCTC GGCGCGTTGGCCTTCATTCACCCCGATCTGAAAGCGCGCTTCACCACGCCCTCACGCGGA TGCACTTTAGGCGCTGCCGTTGCTTTTATCGCGTATCTGCTGAATCAACGTTATGGGAGC GGCGACGCCTGGATGTACGAAACCGAATCCGTGATTACGATGGTAATGGGGCTATGGATG GTGAACGTGGTATTTTCACTGGGGCATCGCTTGTTAAACTTTCAGTCCGCGCGTGTCACC TATTTCGTGAATGCTTCGCTGTTTATTTATCTGGTGCATCATCCCTTAACGCTTTTCTTT GGCGCGTATATTACACCGCATATCTCCTCCAACCTGATCGGGTTCTTGTGCGGGCTGATA TTTGTTATGGGTATTGCGTTAATTCTGTATGAAATTCATTTACGCATCCCGCTCCTGAAA TTTCTCTTTTCAGGTAAACCGCCGGTAAAACAAGAAAGCCGCGCCGCGATCGGGTAGATG AAACATAAACGACAAATGATGAAAATGCGTTGGTTGGGCGCAGCTATTATGTTAACGCTC TACGCATCATCGAGCTGGGCGTTCAGTATTGATGACGTGGCAAAACAAGCTCAATCTTTA GCCGGGAAAGGCTATGAGGCGCCTAAAAGCAACTTGCCCTCCGTTTTCCGCGACATGAAA TATGCGGATTATCAGCAGATCCAGTTTAACAGCGATAAAGCCTACTGGAACAACTTAAAG ACCCCTTTTAAGCTCGAATTTTACCATCAGGGGATGTACTTCGATACGCCGGTCAAGATT AACGAAGTGACGGCGACGACGGTCAAAAGAATCAAATACAGCCCGGATTACTTCAATTTT GGCAATGTTCAGCACGATAAAGACACGGTAAAAGATTTAGGCTTCGCCGGGTTCAAAGTC CTGTACCCCATTAACAGTAAAGATAAGAACGACGAAATCGTCAGTATGCTTGGCGCCAGC TATTTCCGCGTTATCGGCGCAGGCCAGGTGTATGGCTTATCTGCGCGCGGCCTGGCGATT GATACCGCCTTACCATCTGGTGAAGAGTTTCCCCGCTTTCGCGAGTTCTGGATTGAGCGT CCAAAACCCACCGATAAGCGTTTGACCGTCTATGCATTACTGGATTCTCCGCGCGCGACC GGCGCTTACCGTTTTGTGATCATTCCTGGCCGCGATACCGTGGTGGACGTGCAGTCAAAA GTCTATCTGCGCGATAAGGTGGGCAAGCTGGGCGTTGCGCCATTAACCAGTATGTTCCTG TTTGGGCCAAACCAGCCGTCGCCGACGACCAACTATCGTCCGGAATTGCATGACTCGAAC GGCTTATCCATTCATGCGGGTAATGGCGAGTGGATTTGGCGTCCGCTGAACAATCCAAAA CACCTCGCTGTGAGCAGCTATGCGATGGAAAACCCTCAGGGATTCGGCCTGTTGCAGCGT GGTCGCGAGTTCTCGCGCTTTGAAGATTTAGACGATCGCTATGACCTGCGTCCAAGCGCC TGGATTACCCCGAAAGGCGACTGGGGCAAAGGTAAGGTTGAACTGGTTGAAATTCCGACC AATGATGAAACCAACGATAACATCGTCGCTTACTGGACTCCGGATCAACTGCCGGAACCG GGTAAAGAGATGAACTTCAAGTACACTCTGACCTTCAGCCGCGATGAAGATAAACTTCAT GCGCCGGATAATGCCTGGGTGCTGCAAACACGCCGCTCAACGGGCGACGTTAAACAGTCG AATCTGATTCGCCAGCCCGACGGCACTATTGCCTTTGTGGTGGATTTCGTTGGCGCCGAC ATGAAAAAACTGCCGCCGGATACGCCCGTCGCTGCACAAACCAGCATTGGCGATAACGGT GAAATCGTTGACAGTAATGTACGCTATAACCCAGTCACTAAAGGCTGGCGTTTAATGCTG CGCGTGAAAGTCAAAGACGCGAAGAAAACCACGGAAATGCGTGCCGCATTGGTGAATGCC GATCAGACGCTAAGTGAAACCTGGAGCTACCAGTTACCTGCCAATGAATAAATGAATAAA ACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCATTGCCGAAA ACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTACTCGCGAGAA GACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCGGATTCATTG GCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCTATGCCAAAA GCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGCCGTTTCTGG GATCGCCTGCGTGGGCGGGATGTAACGCCGCGCTATGTTTCTCGTCTGACAAAAGAAGAG CAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATTTTGTTAATT TTGACTCTGGCGCAAACCGTCGTCGCGACCTGGTATATGAAGACCATTCTGCCCTATCAG GGATGGGCGCTCATCAATCCTATGGATATGGTGGGGCAGGATATTTGGGTCTCCTTTATG CAGCTCCTGCCCTACATGCTGCAAACCGGTATCCTGATTTTGTTTGCCGTGCTGTTCTGC TGGGTGTCTGCCGGATTCTGGACGGCGCTGATGGGCTTCCTGCAACTGCTTATCGGGCGC GATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCGGAACACCAG ACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCCGGTCTGCGC GCGACCTGGGAGTCCGTTAAAGCCACAGGCAACGCCGCGCATTTTGACGTCTATATCCTT AGCGATAGTTATAACCCGGATATCTGCGTGGCGGAGCAAAAGGCGTGGATGGAGCTCATC GCGGAAGTGCAGGGCGAAGGCCAAATTTTTTACCGTCGCCGCCGCCGCCGTATGAAACGC AAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGCTATATGGTG GTGCTGGACGCGGACTCAGTGATGAGCGGCGAGTGTCTGAGCGGGCTGGTGCGCCTGATG GAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGGATGGATACT CTGTATGCCCGCTGCCAACAGTTCGCGACCCGTGTTTATGGACCGCTGTTTACCGCCGGG CTGCACTTCTGGCAGTTGGGGGAGTCGCACTACTGGGGGCACAATGCCATTATCCGCGTG AAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCGTTCGCCGGA TCGATTCTTTCCCACGACTTTGTGGAGGCGGCGCTAATGCGTCGGGCAGGGTGGGGCGTC TGGATTGCCTACGATCTCCCCGGCTCCTATGAAGAGCTGCCGCCAAACCTGCTGGATGAG CTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTGTTCCTGGTG AAAGGAATGCACCCGGTGCATCGCGCCGTGTTCCTGACCGGGGTAATGTCATACCTGTCC GCGCCGTTATGGTTTATGTTCCTCGCGCTTTCTACCGCGCTGCAGGTCGTTCATGCGTTA ACAGAGCCGCAATATTTCCTTCAGCCGCGCCAGCTTTTTCCGGTCTGGCCGCAGTGGCGT CCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTGCCGAAGCTG CTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTCTGGCGCGTT ACGCTGTCGCTATTGCTGGAAGTGCTGTTCTCCGTGTTGCTGGCGCCGGTGCGTATGCTG TTTCATACCGTGTTTGTGGTCAGCGCGTTCCTCGGCTGGGAAGTGGTCTGGAACTCACCG CAACGCGACGATGATTCTACGCCGTGGGGAGAAGCCTTTATGCGTCACGGCTCTCAACTG CTGCTGGGGCTGGTCTGGGCGGTGGGTATGGCGTGGCTGGATTTACGCTTTCTGTTCTGG CTGGCGCCGATTGTCTTTTCGCTGATTCTGTCGCCATTTGTTTCGGTGATCTCCAGTCGT TCAACGGTAGGATTACGCACCAAACGCTGGAAGCTGTTCCTGATCCCGGAAGAGTATTCG CCGCCTCAGGTGTTGGTCGATACCGATAAATATCTGGAGATGAATCGCCGCCGTATTCTG GACGATGGCTTTATGCATGCGGTATTTAACCCGTCGCTTAATGCGCTGGCGACCGCGATG GCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGTCATGTGGAG CAGGCGCTAAACGAAACGCCGGAGAAACTGAACCGCGATCGGCGTCTGGTTTTGCTCAGC GATCCGGTGACGATGGCGCGTTTACACTATCGGGTCTGGAATGCGCCAGAGAGATACTCT TCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAGGGACGAACA TCGTCAGCGGGATAAATGTCGCGCGTCTCGCAGGCGAGGAACCTGGGTAAATATTTTCTT CTCATCGATAACATGTTAGTGGTGCTGGGTTTTTTCGTCGTCTTCCCGCTCATCTCTATT CGCTTTGTCGATCAAATGGGGTGGGCTGCCGTAATGGTAGGGATCGCGCTCGGCCTGCGT CAGTTTATTCAACAAGGTCTGGGCATTTTTGGCGGCGCCATCGCCGATCGCTTTGGCGCG AAACCGATGATTGTCACCGGTATGCTGATGCGCGCCGCAGGCTTTGCCACCATGGGTATC GCGCATGAGCCCTGGCTCTTGTGGTTTTCCTGCTTTCTTTCCGGTCTCGGCGGTACGCTT TTCGACCCGCCGCGTTCAGCGCTGGTGGTCAAATTAATTCGTCCGGAGCAACGGGGCCGC TTCTTCTCTCTGTTGATGATGCAGGACAGCGCGGGCGCGGTGATTGGCGCGCTGCTGGGA AGCTGGTTGCTACAATACGATTTTCGCCTGGTCTGCGCGACGGGCGCTATTTTGTTCATA TTATGCGCCCTTTTCAACGCATGGCTGCTTCCGGCCTGGAAGCTATCAACGGCCAGAACG CCGGTGCGTGAAGGAATGCGCCGCGTCATGAGCAATAAAAGGTTTGTCACCTACGTGCTG ACGCTGGCGGGCTACTATATGCTGGCGGTACAGGTCATGTTAATGCTGCCGATTATGGTA AACGATATCGCCGGTTCGCCTGCTGCCGTGAAATGGATGTACGCTATTGAGGCGTGTCTC TCGCTGACGTTGCTCTACCCGATTGCCCGCTGGAGCGAAAAGCGTTTTCGGCTGGAGCAT CGGCTGATGGCCGGTTTGCTCGTCATGTCGCTGAGCATGCTCCCCATCGGGATGGTGGGC AATTTACAGCAGCTTTTTACGCTTATTTGCGCTTTCTACATCGGCTCGGTTATCGCCGAA CCGGCGCGCGAAACGCTCAGCGCGTCGCCCGCGGACGCGAGGGCGCGGGGAAGCTATATG GGCTTTAGCCGTCTGGGATTAGCCATTGGCGGCGCGATTAGTTATATCGGCGGCGGCTGG TTGTTTGATATGGGTAAAGCGCTTGCGCAGCCTGAACTACCGTGGATGATGCTCGGTATT ATCGGCTTTATCACCTTTTTGGCTTTAGGCTGGCAATTTAGTCATAAGCGCACGCCGCGC CGGATGCTGGAACCCGGCGCCATGACCATGTATGCCACGCTGGAAGAAGCTATCGATGCA GCCCGGGAAGAATTTCTGGCTGACCATCCAGGCCTCGAACAAGACGAAGCGAATGTGCAG CAGTTCAACGTTCAGAAATATGTACTGCAGGATGGGGACATCATGTGGCAGGTCGAATTT TTCGCCGATGAAGGTGAAGATGGCGAATGTCTGCCGATGCTGAGTGGTGAAGCCGCACAG AGCGTGTTTGACGGCGATTATGATGAGATAGAGATCCGCCAGGAATGGCAGGAAGAGAAT ACTTTGCATGAATGGGATGAAGGGGAATTCCAGCTTGAACCCCCGCTTGATACCGAGGAA GGCCGTACTGCGGCAGACGAATGGGATGAGCGTTAAATGTCACTATTAGCCAGGCTGGAA CAAAGTGTACACGAAAACGGTGGGCTGATTGTCTCATGCCAACCGGTACCAGGCAGCCCT ATGGATAAACCTGAAATTGTGGCTGCAATGGCACAGGCAGCGGCTTCGGCGGGTGCGGTC GCTGTGCGCATTGAAGGCATTGAGAATCTGCGGACTGTTCGTCCCCATCTTTCTGTTCCT ATTATTGGGATAATTAAACGTGACCTTACAGGGTCGCCAGTCCGTATCACTCCATATTTA CAGGATGTTGACGCCCTGGCGCAGGCAGGTGCCGATATTATCGCTTTTGATGCCTCATTC CGCTCTCGCCCGGTTGATATTGATAGTTTACTGACACGTATTCGCCTGCATGGATTACTG GCGATGGCAGACTGTTCAACCGTGAATGAAGGCATAAGTTGCCATCAGAAAGGAATCGAA TTCATTGGTACAACACTGTCTGGCTATACCGGTCCCATCACGCCGGTTGAGCCAGATTTG GCAATGGTGACACAACTGAGTCATGCAGGTTGTCGTGTTATTGCCGAGGGGCGCTATAAC ACGCCTGCACTGGCGGCCAATGCTATTGAGCATGGTGCCTGGGCAGTTACCGTTGGTTCC GCTATCACCCGTATCGAGCATATCTGTCAGTGGTTCAGTCACGCAGTAAAACGCTGAATG AAAAATTTTAAGAAAATGATGACGCTAATGGCGCTATGTTTATCAGTTGCTATCACCACA TCAGGATATGCAACCACGCTTCCTGATATACCAGAACCACTGAAAAATGGTACTGGCGCT ATTGATAATAATGGCGTGATTTATGTCGGCTTAGGTACCGCAGGGACATCCTGGTATAAA ATTGATCTTAAAAAGCAACATAAAGACTGGGAGCGTATAAAGTCGTTTCCTGGTGGAGCT CGTGAGCAATCCGTGTCGGTATTTTTAAATGATAAGCTGTATGTTTTTGGTGGCGTAGGG AAAAAAAACAGTGAATCACCGTTGCAGGTTTATAGCGATGTGTACAAATACTCACCGGTG AAAAATACATGGCAAAAAGTTGATACTATATCTCCAGTTGGATTAACAGGGCATACGGGA GTAAAATTAAACGAAACGATGGTACTTATTACCGGAGGGGTTAATGAGCATATCTTTGAT AAGTATTTTATTGATATAGCGGCTGCGGATGAAAGTGAAAAAAATAAAGTCATCTATAAT TATTTTAATAAACCTGCCAAAGATTATTTTTTTAATAAAATCGTATTTATCTACAATGCT AAAGAGAACACATGGAAGAATGCCGGTGAGCTGCCAGGCGCGGGGACGGCAGGATCGTCA TCGGTAATGGAAAATAATTTCTTGATGCTGATTAATGGTGAGCTCAAACCGGGTTTACGT ACCGATGTGATTTACCGCGCCATGTGGGATAACGATAAGCTAACATGGTTGAAGAACAGC CAGTTACCGCCATCGCCTGGAGAACAACAGCAGGAAGGGTTGGCCGGAGCATTTTCGGGC TATAGCCACGGTGTCCTGCTTGTCGGTGGTGGCGCGAATTTTCCGGGAGCAAAACAAAAT TATACTAATGGAAAGTTTTATTCCCACGAAGGGATAAATAAAAAATGGCGAGATGAAGTC TATGGTTTGATTAATGGCCATTGGCAATATATGGGTAAAATGAAACAACCTCTCGGCTAT GGTGTATCAGTAAGTTATGGTGATGAAGTTTTCCTTATTGGTGGTGAAAATGCTAAAGGG AAACCTGTTTCGTCTGTAACCTCCTTTACCATGCGTGATGGTAATTTATTAATAAAATAA GTGATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACACGTCCACAAAAAAATGCTTTA TTTTCAGCATGGCTGGGTTACGTTTTTGATGGCTTCGACTTTATGCTGATTTTCTACATT ATGTATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTTGCCACA GCGGCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGACAAATTT GGCCGTAAGCCGTTAATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGGTTAAGT GGCCTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGTTTTATTGTCGGTATGGGGATG GCGGGGAAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCATTTAAAA TCTAAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCAGCCTAT TTTATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGTTTGCTA CCCGTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGGGAAGAA GCCAAACTCAGTGGTCTCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCTTTGTCA ATGAAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATTGTTCTG TTCTCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTGGCGGGA GAGGGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGCACTGTA TTGGGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACGTTCAGC ATTGGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAAGATAAT TATTTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTTGGCGGG CTGGTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGTACCGGG CTTATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACCTGGCTT GGAATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACCGCAACA ATTCTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAAAGGTTT CAGTCAACAAAAGAATTTTAAATGAAAAAGTATCTTGCTTTCGCCGTTACGCTGCTGGGT ATGGGTAAAGTCATCGCCTGTACTACCCTTTTGGTAGGCAATCAGGCTTCGGCTGACGGC TCCTTTATTATCGCGCGCAACGAGGATGGCTCGGCAAATAACGCCAAGCATAAGGTTATT CATCCCGTCGCGTTTCATCAACAAGGCGAGTATAAAGCACATCGCAACAATTTTAGCTGG CCGCTTCCGGAGACAGCGATGCGCTATACGGCGATTCATGACTTTGATACTAACGATAAC GCCATGGGTGAAGCCGGTTTCAATTCGGCGGGCGTCGGAATGAGCGCAACGGAAACCATT TACAACGGCAGAGCGGCGCTGGCTGCCGATCCTTACGTGACAAAAACGGGAATCACGGAA GACGCCATTGAGTCCGTGATCCTGCCAGTGGCGCAATCGGCGCGTCAGGGCGCCAAATTA CTGGGAGATATTATTGAACAAAAAGGCGCGGGCGAAGGTTTCGGCGTCGCGTTTATTGAT AGCAAAGAGATATGGTATCTGGAGACGGGAAGCGGACATCAATGGCTGGCAGTACGACTT CCGGCAGATAGCTATTTCGTTTCCGCCAATCAGGGACGTTTACGCCATTACGATCCGAAT GATAACGCGAATTATATGGCGTCACCAACGTTAGTAAGCTTTGCGAAAAAGCAGGGATTA TATGATCCGGCCCGCGGCGAATTCGACTTTCATCAAGCCTATTCGCAGGATAACAAAAAC GATACCACCTATAATTATCCGCGCGTCTGGACGCTACAACACCAGTTTAATCCGCATCTG GATACGGTCGTTAGCGAAGGGGAAACATTTTCTGTTTTTTTAACGCCAATAACGAAGATC AGCGTGGCGGCAGTAAAAAACGCGTTACGCAATCACTATCAGGGAACGTCGCACGACCCT TATGCCAGTCATAATCCACAAGAACCATGGCGACCTATATCCGTTTTTCGTACCCAGGAG TCACATATTTTACAGGTCAGACCGAAATTACCGCAGGCTATCGGCAACGTAGAATACATC GCCTATGGAATGCCATCTCTTAGCGTCTATCTCCCCTATTACCAGGGGATGCGTCATTAT CAACCCGGAGATGATAAAGGAACCGATCGGGCGAGCAACGACTCTACCTACTGGACATTC CGCACGCTGCAAACACTGGTTATGCAAGACTACAATACGTTTGCGCCAGATGTGCAACAT GCCTGGAAAACATTTGAACAGCAAACAGCTAAGCAACAGTATAAGATGGAGCAGAGCTAT CTGAGATTATATGCGTCGCATCCGAAAGAAGCACAACGCTTACTGCAAAATTTTGAAGAT AAAACGATGCAAAATGCGCAGACGCTCGCCCGTCGCCTGACCAATAATATTATTACGACA ATGACTTACCGCACAGATATGAAATATCACTTTTCAAGTACGCAGCCATAAATGGGAAGA CAAAAAGCAGTGATCAAAGCTCGTCGTGAAGCAAAGCGTGTGTTGAGACGAGATTCGCGT AGTCATAAGCAACGTGAAGAAGAATCGGTCACGTCACTGGTACAGATGGGCGGAGTAGAA GCCATTGGCATGGCGCGCGATAGTCGCGATACCTCTCCTGTTAAGGCGCGAAATGAAGCA CAGGCGCATTATCTGAACGCTATCGACAGTAAACAGCTTATTTTTGCGACCGGCGAAGCC GGCTGCGGAAAAACATGGATCAGTGCGGCAAAGGCGGCAGAAGCATTGATTCATAAGGAC GTCGAGAGGATCATTGTGACGCGTCCGGTATTGCAGGCTGATGAAGATCTTGGTTTTTTG CCCGGTGATATCGCTGAAAAATTCGCGCCTTATTTTCGTCCCGTCTACGATGTCCTGCTT AAACGGTTGGGCGCGTCCTTTATGCAATATTGTTTGCGCCCGGAAATCGGTAAGGTAGAA ATTGCCCCGTTCGCCTATATGCGTGGGCGTACTTTTGAAAATGCGGTCGTGATCCTCGAC GAGGCGCAAAATGTGACTGCGGCGCAAATGAAAATGTTTTTGACGCGATTAGGCGAAAAT GTCACGGTCATTGTCAATGGCGATATTACGCAATGCGACCTGCCGCGCGGTGTGCGTTCC GGGTTGAGTGATGCGTTGGAACGCTTTGAAGAAGATGAAATGGTGGGGATTGTGCATTTC AACAAAGACGACTGCGTGCGCTCGGCGCTTTGTCAGCGAACGCTCCACGCATACAGCTAA ATGGGAACCACCACGATGGGGGTTAAGCTGGACGACGCCACGCGCGAACGGATCAAAATG GCCGCGTCGCGTATCGATCGCACGCCGCACTGGTTAATAAAACAGGCAATCTTTAGCTAT CTGGACAAGCTGGAAAATAGCGATACGCTACCGGAGCTACCTGCGCTGTTTGCCGGCGCG GCAAATGAAAGCGAGGAGCCGGTCGCGCCGCAGGATGAGCCGCATCAGCCCTTTCTGGAG TTTGCCGAACAGATTCTTCCCCAATCCGTCTCTCGCGCCGCCATCACCGCCGCCTGGCGC CGCCCGGAAACCGATGCGGTGTCAATGCTAATGGAACAGGCGCGCCTGTCGCCGCCTGTC GCTGAGCAGGCGCATAAACTGGCGTATCAACTGGCGGAGAAATTGCGCAATCAAAAATCC GCCAGCGGTCGCGCGGGTATGGTGCAAGGCCTGTTGCAGGAGTTTTCCCTCTCTTCGCAA GAAGGCGTAGCGCTGATGTGTCTGGCGGAAGCGCTGCTGCGTATTCCCGACAAAGCTACG CGCGATGCGTTAATTCGCGACAAAATCAGTAATGGCAACTGGCAGTCGCATATTGGCCGT AGCCCGTCGCTGTTTGTAAACGCCGCCACCTGGGGGCTGCTCTTTACCGGCCGACTGGTC TCAACGCATAACGAAGCCAATCTTTCGCGCTCGCTGAACCGCATTATCGGCAAGAGCGGC GAACCGTTAATCCGCAAAGGCGTCGACATGGCGATGCGTTTAATGGGCGAGCAGTTCGTG ACTGGCGAAACCATTGCTCAGGCGCTGGCGAATGCCCGAAAACTGGAAGAGAAAGGGTTC CGCTATTCTTACGATATGCTGGGCGAAGCCGCGTTAACCGCCGCCGATGCGCAGGCCTAT ATGGTCTCTTACCAGCAAGCGATTCATGCCATCGGCAAAGCGTCTAACGGTCGCGGTATT TACGAAGGGCCAGGCATCTCGATTAAGCTGTCCGCCCTGCATCCACGCTATAGTCGCGCG CAATACGATCGGGTAATGGAGGAGCTTTATCCGCGCCTGAAATCCCTGACGCTGCTGGCG CGCCAGTATGATATCGGTCTCAATATCGACGCCGAAGAGGCGGATCGTCTGGAGATCTCG CTTGATCTGCTGGAAAAACTCTGCTTCGAACCCGAACTGGCGGGCTGGAACGGCATTGGC TTTGTGATTCAGGCTTACCAGAAACGCTGCCCGCTGGTCATTGATTATTTAGTCGATCTG GCCTCCCGTAGCCGCCGTCGGCTGATGATTCGTCTGGTGAAAGGCGCCTACTGGGATAGC GAGATCAAACGCGCGCAAATGGAAGGGCTGGAGGGCTATCCAGTTTATACCCGCAAAGTG TATACCGATGTCTCTTATCTGGCCTGCGCGAAAAAACTGCTCGCCGTCCCTAATCTGATC TACCCGCAGTTCGCGACCCATAACGCTCACACACTGGCGGCGATTTATCATCTGGCCGGG CAAAATTACTATCCGGGTCAGTACGAATTCCAGTGCCTGCACGGCATGGGAGAACCGCTG TATGAACAGGTCACCGGTAAAGTGGGGGACGGAAAACTTAACCGTCCCTGCCGTATTTAC GCGCCGGTGGGAACACACGAAACCCTGCTGGCCTATCTGGTACGACGCCTGCTGGAAAAC GGCGCCAACACCTCTTTTGTCAACCGCATCGCCGATGCCACCCTACCGCTCGATGAACTG GTGGCCGACCCGGTCGAGGCCGTGGAAAAACTGGCGCAGCAGGAAGGTCAGGCTGGCATA CCGCATCCAAAAATTCCGCTGCCGCGCGATCTGTACGGCGAAGGTCGGATAAACTCCGCC GGACTTGATTTAGCGAATGAACATCGCCTCGCCTCGCTTTCTTCTGCCCTGTTAAGCAAC GCCATGCAGAAATGGCAGGCCAAACCTGTGCTGGAACAACCGGTGGCCGACGGTGAGATG ACGCCGGTTATCAACCCGGCGGAACCGAAAGATATTGTTGGCTGGGGACGCGAAGCGACA GAAAGCGAGGTTGAACAGGCGTTGCAAAACGCGGTCAATCAGGCGCCGGTTTGGTTTGCG ACGCCGCCGCAAGAACGCGCCGCTATTTTGCAGCGGGCGGCGGTATTGATGGAAGACCAA ATGCAGCAGTTGATTGGCCTGTTGGTGCGTGAAGCGGGGAAAACGTTCAGCAACGCCATT GCCGAAGTGCGCGAAGCGGTAGACTTCCTCCATTATTATGCCGGTCAAGTGCGTGACGAT TTCGATAACGAAACGCATCGCCCGTTAGGGCCGGTGGTCTGTATCAGTCCGTGGAACTTT CCGCTGGCCATTTTCACTGGCCAAATCGCCGCCGCGCTGGCGGCAGGTAACAGCGTTCTG GCGAAACCGGCAGAGCAGACATCGCTGATTGCCGCCCAGGGCATTGCCATTTTGCTGGAA GCGGGCGTACCGCCGGGCGTCGTGCAACTGTTGCCGGGACGGGGAGAAACCGTCGGCGCC CAGCTTACCGCCGATGCGCGTGTACGCGGCGTGATGTTTACCGGTTCCACGGAGGTCGCG ACGTTGTTGCAGCGCAACATCGCCACGCGTCTTGACGCCCAGGGGCGCCCTATTCCGTTG ATTGCGGAAACCGGCGGTATGAACGCTATGATTGTCGACTCTTCCGCGCTCACCGAGCAG GTGGTCGTGGATGTGCTGGCTTCCGCCTTCGACAGCGCCGGACAACGCTGTTCCGCGCTC CGCGTGCTGTGTTTGCAGGACGATATCGCCGAACATACGCTGAAAATGTTACGCGGCGCG ATGGCGGAGTGTCGGATGGGGAATCCAGGCCGTCTGACGACCGATATCGGGCCGGTGATC GATAGCGAGGCCAAAGCCAACATTGAACGTCATATCCAGACGATGCGCGCCAAAGGCCGC CCGGTTTTCCAGGCCGCGCGTGAAAACAGCGATGACGCGCAGGAATGGCAGACCGGTACG TTTGTTATGCCCACGCTTATTGAGCTGGAAAACTTCGCAGAACTGGAAAAAGAGGTCTTC GGGCCCGTGCTGCACGTCGTGCGTTATAACCGTAACCAACTGGCGGAGCTTATCGAACAG ATTAACGCTTCCGGCTACGGGCTAACGCTGGGCGTACATACCCGTATTGATGAAACCATT GCGCAAGTCACCGGTTCCGCCCATGTCGGCAACCTGTACGTTAACCGTAATATGGTGGGC GCGGTCGTCGGCGTCCAGCCGTTTGGCGGCGAAGGCCTGTCCGGCACCGGGCCAAAAGCG GGAGGGCCGCTCTATCTCTACCGCCTGCTGGCACACCGCCCGCCCAATGCGCTCAATACG ACGCTGACTCGTCAGGATGCGCGTTACCCGGTGGATGCGCAGCTTAAAACCACGCTACTC GCGCCGTTGACCGCTCTGACGCAATGGGCGGCGGATCGCCCGGCGCTACAGACGCTCTGC CGACAATTCGCCGATCTGGCGCAGGCCGGCACGCAGCGCCTGCTACCGGGGCCGACCGGC GAGCGTAATACCTGGACGCTGTTGCCGCGTGAACGGGTGTTATGCCTGGCTGATGATGAA CAGGACGCGTTGACGCAGCTTGCCGCCGTTCTCGCCGTCGGCAGTCAGGCGCTATGGTCA GACGACGCCTTCCACCGCGATCTGGCGAAACGTCTCCCCGCCGCCGTCGCGGCGCGTGTC CAGTTTGCGAAAGCGGAAACGCTGATGGCGCAGCCGTTTGACGCGGTGATTTTCCACGGC GACTCCGACAAGCTGCGAACCGTGTGCGAAGCCGTCGCCGCCCGCGAAGGCGCGATAGTG TCGGTACAGGGGTTCGCCCGCGGCGAAAGCAATATGCTGCTGGAACGGCTCTATATTGAA CGTTCGCTGAGCGTAAACACTGCCGCCGCTGGCGGTAATGCCAGCCTGATGACAATTGGC TAAATGGCTATTAGCACACCGATGTTGGTGACATTCTGTGTCTATATTTTTGGCATGATA TTGATTGGGTTTATCGCCTGGCGCTCAACCAAAAACTTTGATGACTATATTCTTGGCGGT CGCAGCCTGGGGCCGTTTGTTACGGCTTTATCAGCCGGCGCGTCGGATATGAGCGGCTGG CTGTTAATGGGGCTGCCTGGCGCTATCTTTCTGTCGGGGATCTCTGAAAGCTGGATCGCC ATTGGCCTGACGTTAGGCGCATGGATTAACTGGAAGCTGGTGGCCGGGCGCCTGCGCGTG CATACCGAATTTAACAATAACGCGCTCACGCTGCCGGACTATTTTACCGGTCGGTTTGAG GATAAGAGCCGAGTCCTGCGTATTATTTCCGCGCTGGTCATTCTGCTGTTTTTCACTATC TATTGCGCATCAGGTATTGTCGCTGGGGCACGACTGTTCGAAAGCACCTTCGGTATGAGC TATGAAACCGCACTGTGGGCGGGGGCCGCGGCAACCATTATTTATACCTTTATCGGCGGG TTTCTTGCCGTTAGCTGGACGGATACCGTTCAGGCCAGCCTGATGATTTTTGCGTTAATC CTGACGCCGGTGATGGTTATTGTCGGCGTAGGCGGTTTTAGCGAGTCGCTGGAAGTGATC AAGCAAAAGAGCATCGAGAATGTCGACATGCTCAAGGGGCTGAATTTTGTCGCTATTATT TCTCTGATGGGCTGGGGGCTGGGTTACTTCGGTCAGCCGCATATCCTGGCGCGCTTTATG GCGGCGGATTCCCATCACAGTATTGTTCATGCGCGTCGTATCAGTATGACCTGGATGATT CTGTGTCTGGCGGGCGCGGTGGCGGTGGGCTTCTTTGGCATTGCGTACTTTAACAATAAC CCCGCGCTGGCCGGGGCGGTGAACCAAAACTCAGAACGCGTATTTATTGAACTGGCGCAG ATCCTGTTTAACCCGTGGATTGCCGGTGTTCTGCTGTCTGCTATCCTGGCGGCGGTGATG TCGACGTTGAGCTGTCAGTTGCTGGTATGCTCCAGCGCGATTACGGAAGATTTATATAAG GCTTTTCTGCGTAAAAGCGCCAGCCAGCAAGAGCTGGTATGGGTAGGGCGAGTGATGGTG CTGGTGGTAGCGCTGATCGCCATTGCGCTGGCGGCGAATCCTGATAACCGTGTGCTGGGG CTGGTGAGCTACGCCTGGGCTGGATTCGGCGCGGCATTTGGACCTGTTGTCCTGTTTTCT GTGATGTGGTCGCGTATGACACGTAACGGCGCGCTGGCGGGAATGATTATTGGCGCGGTG ACGGTTATCGTCTGGAAACAATATGGCTGGCTGGATCTGTATGAGATTATCCCTGGCTTC ATTTTCGGCAGCCTGGGGATCGTAATCTTTAGCCTGCTTGGCAAAGCGCCGACAGCAACG ATGCAGGAACGCTTTGCAAAAGCGGACGCGCATTATCATTCCGCGCCGCCGTCGAAGCTA CAGGCGGAATAAATGGCGGGTAAACTGCGGCGTTGGCTGCGTGAAGCCGCGGTTTTTCTG GCGCTCCTCATCGCGATAATGGTGGTCATGGACGTCTGGCGCGCGCCGCAGGCGCCTCCG GCGTTTGCCGCGACACCATTACATACGCTGACGGGAGAGTCGACAACTCTGGCGACCTTG AGCGAGGAACGCCCCGTACTGCTCTATTTTTGGGCCAGCTGGTGCGGGGTATGCCGCTTT ACCACGCCTGCGGTCGCTCACCTGGCGGCGGAAGGGGAAAACGTCATGACCGTTGCGCTC CGCTCCGGCGGTGATGCTGAGGTTGCCCGCTGGCTGGCGCGCAAGGGCGTTGACTTCCCG GTCGTCAATGATGCTAACGGCGCCTTATCCGCTGGCTGGGAAATCAGCGTGACGCCAACG CTGGTGGTGGTTTCACAAGGTCGGGTTGTGTTCACCACCAGCGGCTGGACCAGCTATTGG GGCATGAAGCTTCGGCTGTGGTGGGCAAAAACGTTCTGAATGATGAAAAAAAGCGTCGCT ATGCTGGCGGTTTGTATGCTGGCGCAAAGCCACCTTGCCATTGCTGCCGGTGCTCCTGCG CCTCAAGAGATCAACATTGTTTTACTGGGCACCAAAGGCGGGCCTTCTTTGCTCAATACA GCCAGACTACCGCAAGCGACGGCGCTCACTATCGGCGATAAGATATGGCTGATAGATGCC GGCTACGGCGCCAGTCTGCAACTGGTGAAAAATGGCATTCCACTGCGCAACATCAATACT ATTTTGCTCACCCATCTGCACAGCGACCACATACTGGATTATCCTTCCTTGCTGATGAAT GCCTGGGCAAGTGGCCTGAAAGACCATACCATACAGGTTTATGGCCCGCCGGGAACCCAG GCGATGACGAAGGCTAGCTGGAAGGTCTTTGACAGGGATATCACGTTACGCATGGAAGAA GAGGGGAAACCCGATCCGCGCAACCTGGTTAAGGCGACCGATATCGGCCAGGGCGTCATC TATAAAGATGAACTGGTCACAATAAGCGCGCTGAAAGTGCCTCATTCCCCTTTCCCGGAC GGTGAAGCGTTTGCTTACCGTTTTGATACTCAGGGTAAGCGAATCGTCTTCTCTGGCGAT ACGTCCTGGTTTCCTCCGCTTGCAACGTTTGCCCAGGGGGCGGATATCCTGGTACATGAG GCGGTACATGTCCCTTCGGTAGCAAAACTGGCTAATAGTATTGGCAACGGAAAAACGCTG GCTGAAGCGATTGCGTCGCATCACACCACGATTGAAGATGTCGGTAAGATTGCTCGCGAG GCCCACGTGAAAAAACTGGTGTTAAGTCATCTGGTGCCTGCGACGGTTGCGGATGACGTC TGGCAACAGGAAGCCATGAAAAATTACCCGGGCCCTGTCATTGTCGGTCATGACAATATG ACGATAAGCGTACCGTAAATGTCGCAACGCACAGAGAAAAAAATCGGGAAACGTTCGCAG GCCACCGGTGCAAAACGGCAGCTTATCTTAACCGCCGCGCTTGCCGTTTTTTCCCAGTAT GGCATTCATGGCGCGCGTCTTGAACAGGTCGCCGAGCGGGCAGGCGTCTCCAAAACCAAT CTGCTTTATTATTATCCCTCGAAAGAGGCGCTGTATGTCGCGGTAATGCGACAGATTCTG GATGTCTGGTTGGCGCCGCTCAAGGCGTTTCGCGCAGAATTTTCCCCTCTGGAGGCCATC AAAGAGTATATCCGTCTCAAGCTGGAGGTTTCGCGTGATTATCCGCAGGCGTCGCGGCTC TTCTGCATGGAGATGCTGGCGGGCGCGCCGCTCTTAATGGATGAACTGACCGGCGATCTA AAAGCGTTGATAGATGAAAAATCCGCGCTGATTGCCGGATGGGTGCACAGCGGGAAACTC GCGCCCGTTTCTCCGCATCATTTGATCTTCATGATTTGGGCCGCCACGCAACATTACGCC GATTTCGCCCCTCAGGTTGAAGCGGTAACCGGCGCGACGCTTCGCGATGAAGCCTTTTTC AACCAAACGGTCGAAAGCGTTCAGCGCATTATTATTGAAGGGATTCGCGTGCGTTAAATG GCGAAACAACAACGGATGGGCTGGTGGTTTCTTTGCCTTGCATGTGTCGTGGTAATGGTT TGTACCGCGCAACGCATGGCGGGCCTGCACGCCTTGCAGATGCAGGCGACGGCCTCTGCT GCGGTGGTCAGCGCTCCCTCCTCGACAGATGACGGCTCGCCGGTCACTCCCTGCGAATTA AGCGCCAAGTCGCTGCTGGCGGCGCCTCCAGTACTCTTTGAAGGTGCTATCCTTGCGCTT TATCTACTGCTTTCCTTACTGGCGCCTGTCCGGGTCATGCGCCTGCCGTTTTCGCCTCCA CGGGCTATTTCGCCGCCCACATTACGGGTACATCTACGATTTTGTGTCTTCCGTGAATGA ATGATGATTTTATTCAGGCGGATACTGTTCTGCCTGTTATGGCTTTGGCTGCCCGTCTCC TGGGCGGCGGAAAGCGGCTGGCTGCGTTCGCCCGATAACGACCATGCCAGCATACGGCTA CGTGCCGATACGTCCGCTAACAGTGAGACCCGGCTGTTGCTGGATGTCAAACTGGAAAAC GGCTGGAAAACCTACTGGCGCGCGCCGGGGGAAGGGGGCGTGGCACCCTCTATCGCCTGG AAAGGCGACATGCCTGAGGTAAGCTGGTTCTGGCCAACCCCCTCGCGCTTTGATGTGGCG AATATCACCACCCAGGGATATCACGACGAGGTGACCTTTCCGATGATCGTGCGCGGTACG CCGCCGGCGACCTTGCGCGGTGTGTTGACGTTATCAACCTGCAGCAATGTTTGTCTGTTG ACCGATTACCCCTTTTCCGTGACGCCCACTGTGCAGAATGCCGATTTTGCCCATGACTAT GCGCGGGCGATGGGTAAAGTTCCGCTCCGCAGTGGGCTAACGGACTCGCTTGACGTTGGC TATCGCCCGGGAGAACTGGTGGTCACTGCTACGCGAGCGGCGGGCTGGTCATCGCCCGGG CTCTATCTTGACACCATAGATGACGTCGATTTTGCGAAGCCTCGCCTGCGCGTAGAGGGC GACAGGTTACAGGCGACGGTGCCGGTGACGGACAGTTGGGGCGAAAAGGCGCCCGATTTG CGCGACAAATCGCTGACCCTCGTGTTAGCCGATGGCGCTATCGCCCAGGAGAGCACGCAA ACCATTGGCGCTGCGCCAGCGCAAACGCCGGACAATGCGGCGCTACCTTTCTGGCAAGTT GTAATGATGGCGCTAATCGGCGGACTGATTCTTAATTTAATGCCCTGCGTACTGCCTGTT CTGGGCATGAAACTTGGCTCTATTTTATTGGTAGAGGAAAAAAGCCGCTCTCACATCAGG CGACAATTTTTGGCTTCGGTCGCCGGTATCATTGCGTCATTTATGGCGCTGGCGGCGTTT ATGACCCTCCTTCGCCTGTCAAACCATGCGCTGGCCTGGGGAGTCCAGTTCCAGAATGCA TGGTTTATTGGTTTTATGGCGCTGGTGATGTTGTTGTTTAGCGCCAGCCTGTTCGGGCTT TTTGAGTTCAGGCTTCCCTCATCTATGACCACGAAACTGGCCACTTACGGCGGTAACGGT ATGTCGGGACATTTCTGGCAGGGGGCGTTCGCCACGCTGCTGGCGACGCCTTGTAGCGCG CCGTTTCTGGGCACGGCGGTCGCGGTGGCGCTCACGGCGTCGCTGCCGACGCTGTGGGGG CTGTTCCTTGCGCTTGGCCTGGGAATGAGCGCGCCGTGGCTACTGGTCGCGATACGACCA GGGCTTGCGCTACGTTTACCGCGCCCCGGGCGTTGGATGAATGTCCTGCGCAGGATCCTC GGTCTGATGATGCTGGGGTCGGCTATCTGGCTGGCGACGTTACTCCTGCCGCATTTCGGC TTCACTGCGTCAAAGAGCGCGCAAGACACGGTTCAGTGGCAACCGTTGAGTGAACAGGCA ATCCAGTCGGCGCTGGCGCAGCATAAGCGGGTATTTGTCGATGTCACTGCGGACTGGTGT ATTACCTGTAAAGTGAATAAATACAACGTCCTGCAAAAAGAGGATGTGCAGGCCGCCTTG CAACAGCCGGATGTTGTGGCGCTGCGGGGAGACTGGACGCTGCCGTCCGATGCCATTACA GATTTTCTGAAAACGCGCGGCCAGGTCGCCGTGCCGTTTAATCAGGTATATGGCCCCGGT TTGCCGGAAGGGGAGGCACTGCCCACTTTGCTGACCCGCGATGCGGTATTACAAACGTTG AAAAAAGCGAAAGGAATAACCCAATGAATGAAATACATGATTGTTTTACTGCTGGCGCTG TTTTCGACGCTGAGCATCGCGCAAGAAACCGCTCCTTTTACGCCGGATCAGGAAAAGCAG ATTAAAAATCTGATCCATGCGGCGTTGTTTAACGATCCTGCCAGCCCGCGGATAGGCGCT AAACACCCTAAGCTGACGCTGGTGAACTTTACGGATTACAACTGCCCGTACTGCAAACAG CTCGATCCGATGCTGGAAAAGATTGTGCAGAAATATCCTGACGTTGCGGTCATTATTAAA CCGCTGCCATTCAAAGGAGAGAGTTCCATACTGGCGGCGCGTATTGCGCTGACCACCTGG CGCGATCATCCGCAACAGTTCCTCGCGCTACATGAAAAACTTATGCAAAAGCGCGGTTAC CATACGGATGACAGTATTAAACAGGCCCAGCAGAAAGCAGGGGCGACGCCAGTGACGCTG GATGAAAAAAGCATGGAAACGATACGCACTAATTTGCAGTTGGCAAGACTGGTCGACGTG CAAGGAACGCCAGCGACGATCATTGGCGACGAGCTGATTCCGGGCGCAGTGCCCTGGGAT ACGCTGGAAGCGGTGGTGAAAGAAAAACTGGCGGCTGCCAATGGCGGGTAAATGATTACA CATTCTTTCGGCATCGTTAATTATTTTGTATTATTTGGCTACCTCCTGGCCATGATGTTA GTCGGTGTCTATTTTTCCAGACGGCAAAAAACAGCAGACGATTATTTTCGCGGTGGTGGC CGGGTTCCTGGTTGGGCGGCTGGGGTCAGTGTATTTGCTACTACGTTAAGCTCAATTACA TTTATGTCAATTCCTGCCAAAGCGTTTACTTCCGACTGGACGTTTATCATTGGTCAGTAT CTGGCTATCGCAATTTTACCGCTGGTTTTTTATTTCTATATTCCGTTTTTTCGGAAATTG AAAGTCACATCAGCCTATGAATATCTCGAAGCACGGTTCGATGTGCGCTGCCGTCTGTTC GCCAGCATGTCATTTATGTTGTTTCATATTGGACGTATCGCCATTATCACTTTCCTCACC GTGCTGGCCTTGCGCCCCTTCATCGCTATAGACCCGGTGATTTTGGTACTGTTGATTAGT GTGATGTGTATCATTTATACCTGGATGGGGGGGAATTGAATGGAAAGTCTATTAAATCGT TTATATGACGCGTTAGGCCTGGATGCGCCAGAAGATGAGCCACTGCTTATCATTGATGAT GGGATACAGGTTTATTTTAATGAATCCGATCATACACTGGAAATGTGCTGTCCCTTTATG CCACTGCCTGACGACACTCTGACTTTGCAGCATTTTTTACGTCTTAACTACGCCAGCGCC GTCACTATCGGCGCTGATGCAGACAATACTGCTTTAGTGGCGCTTTATCGCTTGCCGCAA ACCAGTACCGAAGAAGAGGCGCTCACTGGTTTTGAATTATTCATTTCAAACGTGAAGCAA TTGAAAGAGCATTATGCATAAATGAAATACGACCTTATTATTATCGGCAGCGGTTCGGTT GGCGCCGCCGCTGGTTATTACGCCACCCGCGCCGGGCTAAAGGTCCTGATGACCGATGCG CATATGCCGCCTTATCAACAGGGCAGCCACCACGGCGATACCCGTCTTATCCGCCACGCT TATGGTGAAGGCGAAAAATATGTCCCGCTGGTGCTTCGCGCCCAGACGCTTTGGGATGAG CTCTCCACACACAATGAAGAGCCTATTTTTGTCCGCTCCGGCGTCGTCAACCTCGGCCCG GCCGATTCCGCTTTCTTAGCCAACGTCGCACGAAGCGCGCAACAGTGGCAATTGAACGTC GAGCGCCTGGACGCGACGGCCCTCATGACGCGCTGGCCGGAAATTCGCGTGCCCGATAAT TATATCGGGCTGTTTGAAGCTGACTCCGGTTTCCTGCGCAGCGAATTAGCCATTACCACA TGGCTTCGTCTGGCCCGAGAGGCAGGCTGCGCACAGCTATTCAACAGCCCGGTAAGCCAT ATTCACCATGATGATAACGGTGTGACGATAGAGACGAGTGAAGGCTGCTACCACGCCAGC AAAGCGCTGATTAGCGCGGGCACCTGGGTCAAAACGCTGGTACCGGAGCTGCCCGTTCAG CCCGTACGTAAAGTTTTTGCCTGGTTTAAGGCGGATGGACGTTACAGCACTAAAAACCGC TTTCCGGCCTTTACCGGCGAAATGCCCAACGGCGATCACTATTACGGTTTCCCGGCGGAG AACGACGAGTTAAAAATCGGCAAACACAATGGCGGGCAGCGAATACAGGCACCGGAAGAG CGCAAGCCCTTTGCCGCCGTTGCCAGCGATGGCGCGGAAGCATTTCCTTTCCTGCGTAAC GTACTGCCGGGTATCGGCGGTTGTTTACATGGGGCGGCATGTACCTATGATAATTCGCCG GACGAGGATTTTATTATCGATACGCTGCCTGGCCATGAGAATACGCTTGTCATCACTGGA CTCAGCGGACATGGTTTTAAATTCGCCCCGGTGTTAGGAGAAATCGCTGCGGATTTTGCG TTGGGAAAAACGCCCTCCTTTGATCTGACGCCGTTCCGGCTTTCCCGTTTTAGCCAATAA ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACA TCTTGAATGAAACGATATATACTGGCTACCGCGATAGCGTCTCTTGTTGCAGCCCCGGCA ATGGCGCTGGCCGCTGGCAGCAATATTCTCAGCGTACATATTCTCGATCAGCAAACAGGC AAACCAGCGCCCGGCGTGGAGGTGGTACTGGAGCAGAAAAAGGATAACGGATGGACGCAA TTAAACACCGGGCATACCGACCAGGATGGACGAATTAAAGCACTGTGGCCCGAAAAAGCT GCCGCGCCGGGGGATTATCGCGTTATTTTTAAAACCGGCCAGTATTTTGAAAGTAAAAAA CTGGACACGTTTTTCCCGGAGATTCCCGTCGAGTTTCATATCAGCAAAACGAATGAGCAC TATCATGTGCCGCTGTTATTAAGTCAGTATGGTTATTCAACCTATCGCGGGAGCTAAATG GCAAAGATTCTGGTGCTCTATTATTCCATGTACGGACACATTGAAACCATGGCGCACGCG GTGGCGGAAGGGGCAAAGAAAGTCGACGGCGCAGAGGTCATTATAAAGCGTGTGCCAGAA ACAATGCCGCCTGAAATCTTCGCAAAAGCTGGCGGTAAAACGCAAAACGCACCGGTTGCC ACCCCACAGGAGCTGGCGGATTACGATGCCATTATTTTTGGTACGCCAACCCGGTTTGGC AATATGTCAGGCCAGATGCGTACCTTCCTGGACCAAACCGGCGGACTGTGGGCATCCGGC GCGCTATACGGCAAGCTCGGCGGCGTGTTCAGTTCTACCGGAACGGGCGGCGGCCAGGAG CAGACCATCACCTCGACCTGGACTACGCTTGCCCATCATGGGATGGTGATTGTCCCGATA GGCTATTCCGCACAGGAACTGTTTGACGTCTCCCAGGTTCGCGGCGGTACGCCTTACGGC GCAACGACTATCGCTGGAGGCGACGGTTCACGTCAACCAAGCCAGGAGGAACTCTCTATC GCTCGCTATCAGGGGGAATACGTCGCCGGTCTGGCAGTCAAACTCAACGGCTAAATGGAG CCTCAACCCCCACGTCTTAAACCCGGAAAAATCCTTGACACTCTGGGTGCTATGCAAAAA AGCCTGACACGTGCCTCCCAGCGTATTGCGCAATATATTTTAGCCTTCCCCAGACAGGTG ACACAGTCATCTATTGCCGATTTGTCGCGCGACACACAGGCCGGAGAAGCCACGGTTATT CGCTTTTGTCGCACCCTGGGCTATAAAGGTTTTCAGGATTTTAAAATGGACCTGGCCATT GAACTTGCCACTACCGAGTCTGATGACAGTAGTCCTCTACTGGATGCCGAAGTTAGCGAA TCCGACGATGCCCACGCCATTGGTTTAAAATTGCAGAACACCATTAGTAATGTATTATCT GAAACGCTAAATCTGCTTGATATGCAACAGGTTCTCGGTGTCGTGGACGCCCTACGTCAC TGTCACTCAGTTTATATCTTTGGTGTGGGCTCATCGGGGATCACGGCGCTGGATATGAAA CACAAGCTAATGCGTATTGGTTTACGGGGCGATGCGGTAAGCAATAACCATTTTATGTAC ATGCAGGCTACGCTATTAAAAGCAGGCGATGTCGCGATGGGTGTCAGTCACTCGGGCACA TCGCCAGAAACAGTGCATTCACTCCGATTGGCCCGACAGGCTGGCGCCACCACAGTCGCC ATTACCCATAATCTGGGTTCTCCATTATGTGAAGAGGCCGATTTTTGCCTGATCAATGGT AATCGGCAAGGAATGTTGCAGGGTGACTCGATCGGTACGAAAGCCGCGCAGCTTTTCGTC TTTGACCTGCTCTATACCCTTCTTGTACAGTCCTCGCCGGAACAGGCCCGAGAAAGCAAA TTACGGACAATGAATGCCCTGGACATGACAAAATAAATGAAGAAACTGCCCGGCTTTACG CAAGATTACTTACTCAGCAAGGCGACGACCCTGCCTGATAAAACACGCCTGGAGCGTGCC GTTGAACCGCTATGCGCGCGCCATCCCGGAGAGTGCGGCATTCTTGCGCTGGATAACAGT CTGGACGCTTTTGCCGCCCGCTACCGCCTGACCGAAATGGCGGCGCGGACGCTGGATGTG CAGTATTATATTTGGGAAGACGATATGTCCGGGCGGCTGCTCTTTTCGGTTCTGCTGTCG GCGGCGAAGCGCGGCGTTCATGTTCGTCTGCTGCTGGATGATAACAATACGCCTGGTCTG GATGATACGTTGCGCTTGCTGGATAGCCATCCTAATATCGAAGTTCGTCTGTTTAATCCT TTCTCTTTTCGTACGCTACGCGCGCTGGGATATTTGACGGATTTTGCGCGGCTGAATCGG CGGATGCACAATAAAAGTTACACTGCCGACGGCGTAGTGACGCTGGTCGGTGGGCGCAAC ATCGGCGATGCCTATTTCGGCGCTGGCGAGGAGCCGCTATTTTCCGATCTGGACGTGATG GCCATTGGCCCGGTGGTCAATGATGTCGCCAATGATTTTGAACGTTACTGGCGCTGTAGT TCAGTGTCGACATTGCAGCAAGTATTATCCCTTTCTGAGCAGGAACTGACGCAGCGTATC GAACTTCCCGAATCCTGGTATAACGATGAGATCACCCGCCGTTATCTGCATAAGCTGGAA ACCAGCCAGTTTATGGCGGATCTCGATCGCGGAACGTTGCCGCTGATTTGGGCAAAAACA CGCTTGCTTAGCGATGACCCTTCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTTCTT CCGCAGCGATTATTTGACGTGATGGGGTCGCCGACGGAGCGTATCGACATTATTTCCGCT TACTTTGTCCCTACGCGCGCAGGCGTGGCGCAGTTGCTTAATCTGGTCAGGAAAGGTGTG AAGATCGCCATCTTAACTAACTCTCTGGCGGCCAACGATGTGGCGGTCGTTCACGCAGGG TACGCGCGCTGGCGCAAGAAATTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAACCG ACCCGCGAACATGAAACCGCCGTACATGATCGCGGACTCACCGGGAACTCAGGTTCCAGC TTACATGCTAAAACGTTCAGTATTGATGGTAGTAAGGTGTTTATCGGGTCGCTTAATTTT GATCCCCGTTCAACGCTTTTAAATACCGAAATGGGCTTTGTCATTGAAAGTGAAACGCTG GCGACGCTTATTCATAAGCGTTTTACGCAGAGCCAACGCGATGCGGCCTGGCAACTGCGG CTGGATCGCTGGGGACGAATTAACTGGATCGATCGTCAGCAAGAAGAGGAAAAGGTGTTA AAGAAAGAACCCGCTACGCGTTTCTGGCAGCGAGTTCTGGTACGGTTGGCGGCAATTTTA CCTGTGGAATGGTTGCTGTGAATGCCAACTCAAGAAGCAAAAGCGCACCGCGTCGGCGAA TGGGCAAGCCTGCGTAATACGTCGCCGGAAATTGCCGAAGCCATTTTTGAAGTCGCTCAC TATGACGAGAAACTGGCAGAAAAAATATGGGAAGAAGGTAGCGATGAGGTGCTGATCAAA GCCTTTGAGAAAACGGACAAAGACTCGCTCTTCTGGGGCGAACAAGTCATCGAACGTAAG AACGTATAAATGTATCCCGTTGACCTGCATATGCATACCGTCGCCAGCACTCATGCCTAC AGTACTCTGAGCGATTATATCGCGGAAGCCAAACGCAAAGGCATTAAACTTTTTGCGATT ACCGATCATGGTCCGGACATGGAAGATGCGCCGCATCACTGGCATTTTATTAACATGCGC ATCTGGCCGCGTCTGGTTGACGGCGTGGGGATACTGCGTGGCATTGAGGCGAATATCAAG AATATTAACGGTGAAATTGATTGTTCCGGAAAGATGTTCGACTCGCTGGATCTGATTATC GCAGGCTTTCATGAGCCCGTTTTTGCGCCGCATGATAAAGAAACCAATACTCAGGCGATG ATCGCGACCATCGCCAGCGGCAAGGTGCATATAATTAGTCACCCCGGAAATCCAAAGTAT CCAGTGGAGGTTAAAGCCATCGCGCAGGCGGCGGCGAAACACCATGTAGCGCTGGAAATC AACAACTCTTCTTTTCTGCATTCGCGTAAAGGAAGCGAAGATAATTGCCGCGCGGTCGCT GCCGCCGTACGCGATGCGGGAGGCTGGGTAGCGTTAGGCTCTGATTCCCATACGGCCTTT ACGCTTGGCGATTTCACCGAATGCCGGAAAATTCTGGATGCGGTGAATTTTCCGGAAGAT CGAATCCTGAACGTCTCTCCGCAGCGCTTACTGGCCTTTCTCGAATCACGCGGTATGGCG CCTGTACCGGAATTTGCCGAACTTTAAATGAATGAGTTTTCAATCCTGTGCCGTGTGCTG GGATCGTTGTTTTACCGCCAACCGCAAGATCCTTTACTGGTTCCGCTGTTTACGTTAATC CGTGAAGGTAAACTGGCGGCAAACTGGCCGCTGGAGCAGGATGACATGCTGGCGCGTTTA CAGAAAAGCTGCGATATCACGCAGATTTCCACTGATTACAATGCGTTATTTGTTGGGGAA GAGTGCGCGGTAGCGCCATACCGCAGTGCGTGGGTCGAAGGCGCGGAAGAGTCTGAGGTG CGCGCTTTTTTAACGTCGCGAGGGATGCCGCTGGCCGATACGCCTGCCGATCACATTGGC ACTTTATTGCTCGCGGCCTCCTGGCTGGAAGATCAGTCTGCCGAAGATGAAAGTGAAGCG CTGGAAACCTTATTTGCCGATTATCTGCTTCCCTGGTGCAATACCTTCCTCGGTAAAGTT GAAGCCCATGCCGTTACGCCATTCTGGCGCACTCTGGCGCCGCTAACGCGTGATGCGATA GGGGCCATGTGGGATGAACTTCAGGAAGAAGATGAAGAATAAATGATGCGCGCCATGAAC ATACTTCTTTCTATTGCTATCACTACGGGCATCCTTTCTGGAATATGGGGATGGGTGGCC GTCTCCCTGGGGTTACTAAGCTGGGCCGGTTTTTTAGGCTGTACGGCTTATTTCGCCTGT CCGCAGGGCGGCTTTAAGGGATTGTTGATTTCCGCCTGTACGCTGTTAAGCGGTATGGTG TGGGCGCTGGTCATTATTCACGGTAGCGCGTTGGCGCCGCATCTGGAAATTGTCAGTTAC GTGTTGACGGGGATCGTGGCATTCCTGATGTGTATCCAGGCAAAGCAGCTATTGCTTTCT TTTGTTCCGGGAACATTTATCGGCGCCTGCGCGACATTTGCAGGGCAGGGTGACTGGCGG TTGGTATTACCGTCGCTGGCGCTGGGGCTAATCTTTGGCTATGCCATGAAAAATAGTGGG CTATGGCTGGCATCACGCCGCGAGCAACATTCAGCGAATACGGCGGTCACAAAATAAATG AAAAAAAACCTGCTGGGATTCACCCTCGCATCCTTGTTATTCACGACCGGTTCCGCCGTG GCGGCGGAGTATAAAATTGATAAAGAAGGCCAACATGCGTTCGTCAATTTCCGCATCCAG CATCTGGGCTACAGCTGGCTATACGGCACCTTTAAAGATTTCGACGGCACGTTCACTTTT GACGAAAAAAATCCGTCAGCAGACAAAGTGAATGTGACCATTAACACCAATAGCGTCGAC ACTAACCATGCCGAACGTGACAAACACCTGCGTAGCGCGGAGTTTCTTAATGTTGCGAAA TTCCCGCAGGCAACCTTCACCTCTACCAGCGTGAAAAAAGAGGGCGATGAACTGGATATT ACCGGCAATCTGACGCTCAATGGCGTGACTAAACCGGTGACGCTGGAAGCGAAGCTGATG GGCCAGGGCGACGATCCGTGGGGCGGTAAGCGCGCGGGCTTTGAGGCCGAAGGAAAAATT AAGCTGAAAGATTTCAATATAACTACCGATCTCGGCCCAGCCTCACAAGAGGTGGAGCTT ATCATCTCAGTAGAAGGCGTTCAGCAGAAGTAAATGTTACTGATGATGGCGCTGATCGTG CGTATTATCTGGCGGCTTTATTCTCCGCCGCCCGTTGCGTTGACCAGCTATTCCCGTTTA ACGCGCATTGGCGCCGCCGCGGGTCATATCCTTCTGTATCTCCTGCTCTTTGCGATAATC ATTAGCGGCTACCTGATTTCCACCGCCGACGGTAAACCGATTAGCGTCTTTGGCTGGTTT GAGATTCCGGCCACGCTTACGGACGCGGGCGCGCAGGCTGACATCGCCGGAACACTGCAT CTGTGGTTTGCCTGGTCGCTGGTCATTATCTCGCTCTCGCATGGGGTTATGGCGCTAAAA CACCATTTCATCGATAAAGACGACACACTGAAACGTATGACAGGAATGTCGTCATCTGAC TATGGAGCTCAAAAATGAATGGTTAAGTTATCAATGACGCTGCGCCTGACAATTTCTTTT ATCGCCATACTTATCCTCGCCTGTACCGGCATTAGCTGGACGCTCTATAACGCGCTGAGC AAAGAATTAACGTATCGGGATGATATGACGCTAATAAATCGGGCGGCGCAAATGCAGCAA CTGTTACTGGATGGCGCCAGGCCGGAAAATCTGCCGCTCTATTTCAATCGGATGGTGGAT ACGAAGCAGGATATCTTATTGATCCACTCAGCAACAGGCCATAATGTTGCGATTAATCAT AGCGGCATCCCCGACCAACGCTTTAACGAGATTCCGCTGGCTAAAAACATCACCCGCGAA ACCTTATTTCGCCAGGCGGTACAAGGCACGGAGCTGACCGCGGTACGAGTAAACGCCAGA AGCGGCGATAACCCGCTGACCCTTACTATTGCCAGGCTGGCGACGGAAAGGCGGCAAATG CTGGCGCAATATCGCCGCAACAGTTTGCTGATTAGCCTTATCGCGATCCTCGTCTGTTCG GCGCTCAGTCCATTAGTCATCAGAAACGGGCTGCGGGCCATTACGTCGCTCAGCCGACTC ACCGCGGCGACAGATAGCGGCACACTTCGCCAGCCGCTGGCGGAACAGGCGTTACCCGTC GAGCTCAGGCCGCTTGGGCAAGCGCTAAATACCATGCGCCAGAAGCTTTCCGACGATTTT GAACGCCTGAACCAATTTGCCGACGATCTGGCGCATGAGCTGCGCACGCCGGTTAATATT TTACTGGGGAAGAATCAGGTTATGCTGAGTCAGGAACGCAGCGCCGAAGAGTATCAACAA GCCCTTGTCGATAATATTGAAGAGCTGGAGGGACTGTCGCGACTGACAGAAAATATTCTC TTTCTGGCACGCGCGGAGCACCAGAATATAGCGGTAAAAAAACAGCCTGTTTCGCTCAAT GCGCTGGTCGAAAATATGCTGGATTATCTTAGCCCCCTTGCCGAAGAGAAGCACATCTGT TTTATAAATCAATGTCAGGGAACGGTATGGGCTGACGAAATATTATTACAAAGAGTGCTC TCAAACCTGCTGACGAATGCCATCCGTTATTCTGATGAAAACGCCGTGATACGTATTGAA AGCGCTTATGATGATAACGTTGCAGAAATTCGGGTCGCTAATCCGGGCAGCCCCACCGCC GATGCGGATAAGCTTTTCCGGCGTTTTTGGCGAGGAGATAATGCCCGCTACACTGCCGGT TTCGGCCTGGGGTTATCGTTAGTTAACGCGATTGCCCTATTGCACGGTGGCTCGGCATCT TACCGCTATGCCGATGAACATAATATCTTTTCGGTTCGTCTGCCTGATAGCGGTGATAGC TAAGTGATATGTCTCAAAGTCCAGGGCGGCATTGGTGAAATTTTTACGGTGACGCAGCAG GCGGATAAATTCTTTCCGGCTACGCAGTTCCACTGGAGCTGGACGGAAAGCACAGTACCT GTATTGATGATTGGTTTTCTGTTTGCCAATATTCAGCAATTTACTGCCAGTCAGGATGTG GTCCAACGCTATATCGTGACTGACTCCATAGAGGAAACGAAGAAAACATTACTTACAAAT GCCAAACTGGTTGCTGTGATCCCTGTTTTCTTTTTTGCTATCGGCTCGGCATTATTTGTC TACTATCAGCAACATCCACAATTATTACCGGCGGGATTCAACACTGGCGGCATTTTGCCC TTATTCGTGGTCACCGAAATGCCAGTCGGCATTGCAGGGTTGATAATCTCCGCTATTTTC GCTGCCGCGCAGTCCAGCATCTCCAGCAGCTTAAACAGCATTTCCAGTTGTTTTAATTCC GATATCTATCAGCGTTTGAGTCATAAAAAAGGAACGCCAGAAAACCGTATGAAAATAGCT AAGTTAGTTATTCTGGTCGCGGGCCTGATAAGTAGCGCGGCCTCGGTATGGCTGGTCATG GCCGATGAATCAGAAATCTGGGATGCATTTAATAGTCTGATAGGTCTGATGGGAGGGCCA ATGACCGGTCTGTTCATGCTGGGCATTTTCTTTAAACGAGCAAATGCCGGGAGTGCGGTT TTAGGAATTATTATCAGCGTCATTACCGTGCTGGGCACACGCTATGCCACTGACCTTAAC TTCTTCTTTTATGGGGTCATTGGCTCGCTAAGCGTGGTGATCAGCGGCGTTATTTTCGCC CCGTTATTTGCCCCGGCACCGCCATTGACGCTGGATGAAAAACCTGAACCAAAGGTGACA TTATGAATGAAAATCAACAGATATCTTCTGGGTATGGTTTCGTTTATAGCATTTTCATCA TATCTACAAGCGGCAACCCTTGATTATCGGCATGAATATGCTGATAGAACCAGAATTAAT AAAGACCGTATTGCTATAATTGAAAAGCTTCCTAACGGCATTGGTTTTTATGTCGATGCC AGCGTTAAATCGGGAGGAGTAGATGGTGAGCAGGATAAGCATTTAAGCGATCTCGTCGCA AACGCTATAGAACTGGGCGTAAGTTATAATTATAAAGTTACGGACCATTTTGTTTTGCAG CCTGGATTTATATTTGAAAGCGGTCCAGACACTTCAATTTATAAGCCTTATTTAAGGGCG CAATATAATTTTGATTCTGGTGTTTATATGGCTGGTCGTTACCGTTATGACTATGCAAGG AAGACAGCTAACTATAATGATGATGAGAAAACGAATAGATTTGATACTTATATAGGTTAT GTTTTTGATGAGTTGAAATTGGAATATAAATTTACCTGGATGGATAGCGATCAAATTAAA TTTGATAACAAAAAAACAAACTATGAACATAATGTGGCTTTAGCCTGGAAACTGAATAAG TCATTTACACCATACGTTGAGGTCGGAAATGTAGCGGTGAGAAATAATACCGATGAGAGA CAGACCCGTTATCGCGTTGGATTACAATACCACTTTTGAATGACGAAATACGGTGTTATA GGTACAGGTTATTTTGGCGCTGAACTGGCGCGATTTATGTCTAAGGTTGAAGGGGCGAAA ATCACTGCGATTTACGATCCGGTAAATGCGGCTCCGATAGCGAAAGAGCTGAACTGTGTC GCCACTTCAACGATGGAGGCGCTTTGTACCCATCCTGATGTGGATTGCGTAATTATTGCT TCACCAAATTACTTACATAAAGCGCCGGTCATTGCGGCGGCTAAAGCGGGTAAACACGTG TTTTGTGAAAAACCTATCGCCTTAAATTACCAGGATTGTAAGGATATGGTTGATGCCTGC AAAGAAGCTGGTGTTACCTTTATGGCGGGTCACGTTATGAACTTTTTTCACGGGGTTCGC CACGCTAAAGCGCTCATCAAAGCCGGTGAAATCGGTGAAGTTACACAAGTTCACACTAAA CGTAATGGTTTTGAAGACGTGCAGGATGAGATCTCATGGAAGAAGATTCGCGCAAAGTCA GGTGGGCATCTGTACCATCACATTCACGAGCTAGATTGTACACTGTTCATCATGGATGAA ACCCCATCCCTGGTTTCAATGGCGGCGGGGAATGTTGCGCACAAAGGTGAAAAATTTGGT GATGAAGATGATGTTGTCCTAATCACCCTTGAGTTTGAAAGCGGTCGTTTCGCGACACTT CAGTGGGGATCATCGTTCCACTACCCTGAGCACTATGTATTAATTGAGGGCACGACAGGT GCAATTCTCATTGATATGCAAAACACGGCTGGTTATCTAATAAAAGCGGGCAAAAAAACA CACTTTCTTGTGCATGAAAGCCAGGCGGAGGATGATGATCGTCGCAACGGTAACATATCC AGCGAGATGGATGGCGCAATCGCTTATGGTAAACCCGGTAAACGTACGCCGATGTGGCTC TCATCAATTATGAAACTGGAGATGCAGTACTTGCATGATGTGATAAACGGTCTGGAGCCA GGCGAGGAGTTTGCTAAATTGCTAACGGGAGAAGCGGCGACAAATGCCATTGCTACCGCT GATGCTGCGACGCTTTCTTCAAACGAGGGGCGCAAAGTTAAACTCACTGAAATTCTTGGC TAAATGACATCACGTCTTCAGGTCATACAGGGTGATATCACTCAACTTAGCGTCGATGCG ATTGTGAATGCCGCTAACGCATCATTAATGGGCGGCGGTGGCGTAGACGGCGCAATTCAT CGCGCGGCGGGGCCGGCATTGCTGGACGCCTGTAAACTCATCCGTCAGCAACAGGGCGAA TGTCAGACGGGACATGCGGTTATCACGCCTGCTGGCAAGCTTTCGGCAAAGGCGGTTATT CACACAGTGGGGCCCGTCTGGCGAGGCGGCGAACACCAGGAAGCTGAGCTACTCGAAGAG GCATACCGGAATTGTTTGCTGCTTGCCGAGGCGAATCACTTTCGTTCCATCGCTTTTCCG GCAATCAGTACCGGCGTTTATGGCTATCCACGCGCCCAGGCCGCTGAAGTCGCCGTCAGG ACGGTTTCAGATTTTATTACCCGTTACGCTCTGCCTGAACAGGTATACTTTGTCTGTTAT GATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAGGCGACGACCCTGCC TGA >real_data_2 ATGAAAAAATCATTACTCGCTGTTGCTGTGGCAGGGGCTGTTTTGTTGTCATCCGCCGTA CAGGCGCAGACAACGCCGGAAGGTTATCAATTACAACAGGTGCTGATGATGAGCCGCCAT AATCTGCGGGCGCCGCTGGCGAATAATGGCAACGTACTGGCGCAGTCGACGCCGAACGCC TGGCCGGCGTGGGACGTTCCCGGCGGGCAACTGACGACGAAAGGCGGCGTGCTGGAAGTC TATATGGGACACTACACACGTGAATGGCTGGTCGCGCAGGGGCTGATACCGTCGGGAGAA TGTCCGGCGCCCGACACGGTATATGCCTATGCGAATAGTTTGCAGCGCACCGTCGCCACC GCGCAATTTTTCATTACCAGCGCTTTCCCCGGCTGTGATATTCCTGTTCATCATCAGGAA AAAATGGGCACTATGGACCCTACCTTCAATCCGGTGATTACCGATGATTCCGCCGCGTTC CGGCAACAGGCCGTACAGGCGATGGAAAAGGCGCGTAGTCAGCTACATCTTGATGAGAGT TATAAACTGCTTGAGCAGATAACGCATTATCAGGACTCGCCGTCCTGCAAAGAGAAGCAT CAGTGTTCGCTAATCGACGCGAAAGATACCTTCAGCGCGAACTATCAGCAAGAGCCTGGC GTGCAGGGGCCGCTGAAAGTAGGGAACTCGCTGGTGGATGCGTTTACCCTGCAATATTAC GAAGGCTTTCCGATGGATCAGGTCGCTTGGGGCGGGATCCACACCGATCGGCAGTGGAAG GTGCTGTCAAAACTGAAAAACGGCTACCAGGACAGCCTGTTTACCTCACCCACGGTGGCG CGCAATGTCGCTGCGCCGCTGGTAAAATATATCGATAAGGTGCTGGTTGCCGAGCGCGTT AGCGCGCCGAAGGTTACCGTGCTGGTGGGGCATGATTCCAATATCGCGTCGCTGCTGACG GCGCTGGATTTTAAACCCTATCAGCTCCATGACCAGTATGAGAGAACGCCGATTGGTGGT CAGCTTGTCTTCCAACGCTGGCATGACGGTAACGCTAACCGGGATTTGATGAAAATCGAG TATGTCTACCAGAGCGCCCGGCAGTTACGTAATGCGGAAGCGTTAACGCTCAAATCGCCT GCGCAAAGGGTAACGCTGGAACTGAAAGGATGTCCGGTGGATGCGAACGGCTTCTGTCCG CTGGATAAGTTCGATAACGTCATGAACACTGCTGCAAAATAGATGGAAAAGAATAATGAA GTCATTCAGACCCATCCGCTTGTAGGATGGGACATCAGCACCGTCGATAGCTATGATGCG CTGATGCTGCGTTTACACTACCAGACCCCAAATCGTCCGGAACCGGAAGGGACTGAAGTT GGTCAAACGCTCTGGTTAACGACAGATGTAGCCAGGCAATTTATTTCAATATTAGAAGCC GGCATCGCCAAAATAGAATCAGGCGATTACCAGGAAAACGAGTATCGTCACCATTAGATG GAACTTAAGGATTATTACGCCATTATGGGCGTGAAACCGACGGACGATCTCAAGACGATT AAGACCGCCTATCGCCGACTGGCCCGCAAGTACCATCCAGATGTCAGCAAAGAACCCGAT GCCGAAGCCCGTTTCAAAGAGGTTGCTGAAGCATGGGAAGTGCTGAGTGATGAGCAACGG CGCGCCGAGTATGACCAGTTATGGCAACACCGTAACGATCCACAATTTAATCGCCAGTTC CAGCAACACGAAGGCCAGCCGTATAACGCCGAAGATTTTGATGATATTTTCTCGTCTATT TTTGGTCAGCACGGTCGTCATTCGCACCACCGCCACGCCGCACGCGGTCATGATATCGAA ATTGAAGTGGCGGTATTCCTGGAAGAAACGCTGGAAGAGCACCAGCGTACGATTAGCTAT TCCGTCCCCGTTTATAACGCGTTCGGCCTGGTGGAGCGGGAAATTCCCAAAACATTGAAT GTGAAAATCCCGGCTGGCGTCAGCAACGGGCAACGAATCAGACTGAAAGGCCAGGGCACG CCGGGGGAAAACGGCGGACCTAATGGCGATTTATGGCTCGTTATCCATATTGCCCCGCAT CCGCTCTTTGATATCGTCAATCAGGATCTGGAAGTCGTCCTTCCGCTTGCCCCATGGGAG GCGGCGCTCGGCGCTAAGGTGTCTGTGCCAACGCTTAAAGAGCGTATTTTGCTGACCATT CCCCCCGGCAGCCAGGCAGGTCAGCGGCTGCGTATCAAAGGAAAAGGATTAGCCAGTAAA AAGCACACTGGCGATCTCTATGCCATCATCAAAATCGTTATGCCGCCGAAACCTGACGAG AAAACAGCTGCCCTGTGGCAACAACTGGCGGACGCGCAGTCGTCCTTTGACCCACGCCAG CAATGGGGGAAAGCATAAATGGCTAACATCACTGTCACCTTTACCATCACCGAATTTTGT TTGCACACCGGCGTGACGGAAGAGGAGCTAAACGAAATCGTCGGACTTGGCGTAATTGAG CCTTACGAAGACGATAACGCCGACTGGCAATTCGACGATCGCGCAGCGAGCGTGGTACAA CGCGCGCTACGCTTACGCGAGGAGCTGGCGCTCGACTGGCCAGGGATCGCGGTCGCGTTA ACGCTGCTGGAAGAGAATTCACGGCTGCGCGAAGAAAACCGGTTACTGCTGCAACGCCTT TCTCGCTTTATCTCGCATCCCTAAATGTCATCTTGTTGGAGATTTACGGATTCGCTAACA AGCCTATGGCATACTGCGTTGATGAAGATTTTATTGATTGAAGATAACCAGAAAACCATT GAGTGGGTACGTCAGGGACTCACGGAGGCAGGCTATGTGGTTGATTATGCCTGTGATGGA CGAGACGGATTACACCTAGCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATG CTGCCGGGGCTTGATGGATGGCAGGTTTTACGCGCGTTGCGCACTGCATATCAGCCCCCT GTTATTTGCCTGACGGCGCGCGACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGC GCTAATGATTACCTTGTTAAGCCTTTTTCCTTCGCCGAACTGCTGGCCCGGGTGAGAGCT CAACTCAGACAGCATGTCCCGGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGAT GCCACAAAGCAATCGGTGTTACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTC CTGCTCCTCTGGTTACTGGCGTCCCGGGCAGGGGAAATCGTGCCCCGAACCGCGATCGCC AGCGAAGTTTGGGGAATTAACTTTGATAGTGAAACCAACACCGTTGATGTCGCGATTCGT CGGCTGCGCGCCAAAGTAGACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCAGGGG ATGGGTTATCGATTACAGGCGGAAACGTCGCAGAATGGTTAAATGAAAAACAAATTGTTA TTTATGATGTTGGCAATACTGGGTGCGCCTGGGATTGCAACCGCGACAAATTATGATCTG GCTCGTTCAGAGGATAATTTTGCGGTAAATGAATTAAGCAAGTCTTCATTTAATCAGGCG GCCATTATTGGTGAAGTCGGCACGGATAATAGTGCCAGAGTACGCCAGGAAGGATCAAAA CTATTGTCCGTTGTTTCACAAGAAGGAGAAAATAATCGGGCGAAAGTCGACCAGGCAGGG AATTATAACTTTGCGTATATTGAGCAAACGGGCAATGCCAACGATGCCAGTATATCGCAA AGCGCTTACGGTGATAGTGCGGCTATTATCCAGAAAGGTTCTGGAAATAAGGCCAATATT ACCCAGTACGGTGCGCAGAAAACAGCAGTTGTAGTGCAGAAACAGTCGCATATGGCTATT CGCGTCACCCAAGGCTAAATGCATACTTTATTGCTCCTTGCCGCACTTTCAAATGAGATT ACGTTTACCACGACTCAGCAAGGCGATATTTACACGGTGATCCCTCAGGTCACAGTAAAC GAACCCTGCGTCTGTCTGGTGCAAATTCTCTCTGTGCGCGACGGCGTCGGGGGAGAAAGC CATACACAGCAAAAACAAACGCTATCTTTACCTGCTAATCAACCGATTGAGTTGGCTCGT CTTAGTGTAAATATATCTTCAGAGGACTCGGTTAAAATTATTGTTACTGTTTCGGACGGA CAATCACTGCATTTATCACAACAATGGCCGCCTTCTGCACAGTAGATGTTTAATGAAGTC CATAGTAGTCATGGTCACACACTATTGTTGATCACAAAGCCATCTCTGCAAGCTACGGCA TTATTGCAACATTTAAAGCAATCGCTGGCCATAACCGGACAACTGCATAATATTCAACGT TCTCTGGAAGATATCTCAGCCGGTTGCATTGTTTTAATGCATATGATGGAAGCGGATAAG AAGCTTATCCACTATTGGCAGGATAATTTAAGCCGCAAACACAATAATATAAAAACATTA TTGTTAAATACCCCTGACGATTATCCCTACCGTGAAATTCAAAACTGGCCTCATATTAAC GGCGTGTTTTACGCCACTGAAGACCAGGAACACGTGGTCCGCGGATTACAGGGTATTCTG CGGGGCGAATGCTATTTTTCACAAAAATTAGCCAGTTACCTGATTACACACTCAGGAAAT TACCGCTACAACAGCACCGAGTCCGCATTACTCACTCATCGCGAAAAAGAGATCCTCAAT AAGTTACGTATTGGTGCCTCTAATAATGAAATCGCCAGGCCGCTATTTATCAGCGAGAAT ACGGTTAAGACACATCTTTATAATCTTTTCAAAAAGATACCTGTCAAAAATCGCACCCAG GCAGTTTCATGAATGAAACGCTATCTGACCTGGATTGTAGCAGCAGAGTTACTGTTCGCT ACCGGAAACCTCCATGCCAATGAAGTTGAAGTCGAGGTTCCCGGATTGTTAACCGACCAT ACCGTCTCTTCCATAGGACATGAATTCTATCGTGCATTCAGCGACAAATGGGAAAGCGAA TACACCGGCAACCTGACCATTAATGAAAGACCCAGTGCGCGTTGGGGAAGCTGGATCACC ATAACGGTAAACCAGGACGTTATTTTCCAGACCTTTTTATTTCCAATGAAAAGAGACTTC GAGAAAACCGTCGTCTTCGCATTAGCGCAAACAGAGGAAGCATTAAATCGCCGACAAATA GATCAAACGCTCTTAAGTACGAGTGATTTAGCGCGTGATGAATTCTAAATGCGTGTTAAA CATGCAGTAGTGCTGCTCATGCTTTTTTCGCCATTAACCTGGGCTCGAAATATGACGTTC CAGTTCCGTAATCCTAACTTTGGTGGAAACCCCAATAACGGTTCCCTTTTATTGAATAGC GCCCAGGCGCAAAATTCATATAAAGACCCCGCTTATGATAACGATCTTGGTATCGAGACC CCCTCAGCGTTGGATAACTTTACGCAGGCTATTCAATCGCAAATTCTGGGCGGCTTGTTG ACCAATATTAATACCGGAAAACCAGGACGTATGGTGACCAATGATCTTATTATCGATATC GCTAATCGCGACGGACAGCTCCAGCTCAACGTCACGGACAGAAAACCGGGAAGAACCTCG ACCATCGAAGTGTCAGGTTTACAAACTCAGTCAACCGATTTTTAAATGCCGCGCTTACTT ATTTTGGTTGCCGTTTTATCGTTGAGCGGATGCTTAACTGCCCCGCCGAAACAAGCTGCG AAACCGACATTAATGCCCCCCGCACAAAGTTACAAAGATTTGACGCACTTACCTGCTCCC ACCGGTAAGATCTTTGTTTCGGTATATAACATTCAGGATGAAACGGGCCAATTTAAACCT TACCCGGCAAGTAACTTTTCCACGGCTGTGCCGCAGAGCGCCACCGCTATGTTGGTCACC GCGCTGAAAGATTCGCGCTCGTTTATCCCACTAGAACGACAAGGCTTACAGAATCTTTTG AATGAACGGAAAATTATTCCCGCAGCCCAGGAAAACGGCACCGTGGCGATGAATAACCGT ATCCCGCTTCAGTCGTTGACGGCGGCAAATATTATGGTGGAAGGTTCTATTATTGGTTAT GAAAGTAACGTCAAATCCGCCGGGGTCGGCGCAAGATATTTCGGTATTGGCGCCGATACG CAGTATCAGCTGGATCAGACTGCTGTCAACCTGCGCGTGGTTAACGTCAGTACGGGCGAG ATCCTTTCTTCGGTGAACACCAGTAAAACGATCCTTTCCTATGAAGTACAGGCAGGCGTG TTCCGTTTTATTGATTACCCGCGCTTACTGGAAGGCGAAATCGGCTATACCTCGAACGAA CCGGTGATGCTGTGTCTGACGTCAGCCATTGAAACCGGCGTTATCTTCCTCATTAATGAT GGTATCGATCGCGGACTGTCGGATTTGCAGAATAAAGCGGACAGGCAAAATGATATTCTG GTGAAATACCGTGAGCTGTCAGTACCGCCAGAATCCTGAATGTCTATTGCCGTAAATATG AATGACCCGACCAACACGGGCGTCAAAACGACGACCGGCAGCGGGTCGATGACCGGAAGC AACGCTGCCGATCTGCAAAGCAGTTTCCTGACCTTACTGGTCGCGCAATTGAAGAACCAG GACCCGACTAACCCATTACAAAATAATGAGTTAACGACACAGTTGGCGCAAATCAGTACC GTGAGCGGCATTGAAAAACTGAATACGACGCTGGGGGCTATTTCCGGGCAAATCGATAAT AGTCAGTCCCTACAGGCGACCACGCTGATTGGACATGGCGTTATGGTGCCTGGCACCACA ATTCTGGCGGGTAAAGGCGCGGAAGAAGGGGCCGTGACGTCCACGACGCCGTTTGGCGTG GAATTGCAACAGCCTGCGGACAAAGTGACGGCAACCATTACCGATAAAGATGGCCGGGTG GTACGGACGCTGGAGATCGGTGAGTTGCGAGCCGGGGTACACACCTTTACCTGGGATGGT AAGCAAACGGACGGAACAACGGTACCGAATGGTTCTTACAACATTGCGATTACCGCCAGC AATGGCGGGACGCAACTGGTGGCGCAGCCGCTGCAATTCGCTCTGGTACAGGGCGTGACG AAGGGCAGTAACGGCAACCTGTTGGATCTGGGTACCTACGGCACCACCACACTCGACGAA GTTCGGCAAATAATCTAAATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTGCGGCC ACCAACCTTGATGTTATCGGTAATAACATCGCCAACTCCGCCACCTATGGCTTTAAGTCC GGTACGGCATCATTTGCCGATATGTTCGCCGGTTCCAAAGTGGGGTTGGGCGTAAAAGTG GCGGGGATTACCCAGGATTTTACCGACGGTACGACAACGAACACCGGGCGCGGGCTGGAT GTCGCGATTAGCCAGAACGGTTTTTTCCGCCTGGTAGACAGCAACGGTTCCGTGTTCTAT AGCCGCAACGGCCAGTTCAAACTGGACGAGAACCGTAACCTGGTCAATATGCAGGGGATG CAGTTGACCGGCTATCCGGCCACCGGTACGCCGCCGACCATTCAGCAGGGGGCGAATCCT GCGCCGATCACCATTCCGAACACGCTGATGGCGGCGAAATCGACCACCACCGCGTCAATG CAGATCAACCTGAACTCAACGGACCCTGTACCGTCTAAAACGCCCTTTAGCGTGAGTGAT GCGGATTCGTATAACAAAAAAGGCACCGTCACCGTTTATGACAGCCAGGGTAATGCCCAT GACATGAACGTCTATTTTGTGAAAACCAAAGATAATGAATGGGCTGTGTACACCCATGAC AGCAGCGATCCTGCAGCCACTGCGCCAACAACGGCGTCCACTACGCTGAAATTCAATGAA AACGGGATTCTGGAGTCTGGCGGTACGGTGAACATCACCACCGGTACGATTAATGGCGCG ACAGCGGCCACCTTCTCCCTCAGCTTCCTTAACTCCATGCAGCAGAACACCGGGGCTAAT AACATCGTCGCCACCAATCAAAACGGCTATAAGCCTGGCGACCTGGTGAGCTACCAGATT AACAATGATGGCACCGTGGTTGGCAACTACTCCAACGAGCAGGAGCAGGTGCTGGGGCAG ATTGTGCTGGCTAACTTCGCCAACAACGAAGGTCTGGCATCCCAGGGCGATAACGTCTGG GCGGCGACGCAGGCCTCCGGGGTAGCGCTGCTGGGGACTGCCGGTTCCGGCAACTTCGGT AAGCTGACGAACGGCGCGCTGGAAGCCTCTAACGTGGATTTGAGTAAAGAGCTGGTGAAT ATGATCGTCGCGCAGCGTAACTACCAGTCGAATGCGCAGACCATCAAAACCCAGGACCAG ATCCTCAATACGCTGGTTAACCTGCGCTAAATGGATCACGCAATTTATACCGCCATGGGG GCGGCCAGCCAGACGCTTAACCAGCAGGCGGTAACGGCCAGCAACCTGGCTAATGCCTCA ACGCCGGGCTTTCGCGCGCAGCTTAACGCGCTACGCGCGGTGCCCGTTGATGGCCTCTCT TTAGCGACGCGCACGTTGGTTACGGCGTCGACGCCGGGGGCGGATATGACCCAGGGTCAG TTGGACTACACTTCCCGCCCGCTGGATGTTGCGTTACAGCAGGACGGCTGGCTGGTGGTG CAAGCGGCGGATGGCGCTGAAGGATATACCCGTAACGGGAATATCCAGGTGGGCCCGACC GGGCAGTTAACCATTCAGGGACATCCGGTTATCGGCGAAGGCGGCCCGATTACCGTTCCG GAAGGGTCGGAAATCACCATTGCGGCAGACGGCACGATCTCCGCGCTCAATCCCGGCGAC CCGCCAAACACGGTGGCGCCCGTTGGGCGGCTGAAGCTGGTCAAAGCGGAAGGCAATGAG GTGCAGCGGAGCGATGACGGTTTATTCCGCCTTACCGCCGAGGCACAGGCTGAACGCGGG GCGGTACTGGCCGCCGACCCGTCAATTCGCATTATGTCGGGCGTGCTGGAGGGCAGTAAC GTCAAGCCGGTTGAAGCCATGACCGACATGATCGCCAACGCACGTCGTTTTGAAATGCAG ATGAAGGTTATCACCAGCGTAGATGAGAACGAAGGGCGAGCTAACCAACTGCTGTCGATG AGTTAAATGATCAGTTCATTATGGATCGCCAAAACCGGTCTGGACGCGCAGCAAACCAAT ATGGATGTGATTGCCAATAACCTGGCAAACGTCAGCACCAATGGTTTTAAGCGTCAGCGC GCGGTATTTGAAGATCTGTTGTATCAGACCATCCGCCAGCCGGGCGCGCAGTCGTCCGAG CAGACGACGCTGCCTTCCGGGCTGCAAATCGGTACCGGCGTGCGTCCGGTCGCCACGGAG CGCCTGCACAGTCAGGGGAACCTGTCGCAGACCAACAACAGTAAAGATGTGGCGATTAAA GGGCAGGGCTTTTTCCAGGTCATGCTGCCGGACGGTACGTCTGCCTATACCCGCGACGGC TCTTTCCAGGTGGATCAGAATGGTCAACTGGTGACGGCGGGCGGTTTTCAGGTGCAGCCG GCAATCACCATTCCGGCCAACGCGTTAAGCATCACGATTGGCCGCGACGGCGTGGTCAGC GTTACCCAGCAAGGGCAGGCCGCGCCGGTTCAGGTCGGGCAGCTTAACCTGACCACCTTT ATGAACGACACCGGTCTGGAAAGCATCGGCGAGAACCTCTATATCGAAACGCAATCGTCC GGCGCGCCGAACGAAAGCACGCCGGGGCTCAACGGCGCGGGGTTGTTGTATCAAGGGTAT GTCGAAACGTCGAACGTTAACGTGGCGGAAGAGCTGGTGAACATGATTCAGGTTCAACGC GCCTATGAAATTAACAGTAAAGCAGTATCGACGACCGATCAGATGCTGCAGAAACTGACG CAACTCTAAATGGCCCTGATGGTCGCGACGCTGACAGGATGCGCCTGGATACCCGCTAAA CCGCTCGTGCAGGGGGCGACCACGGCGCAGCCGATACCTGGCCCGGTACCGGTGGCGAAT GGCTCCATATTTCAGTCTGCGCAGCCGATTAATTATGGCTATCAGCCGCTTTTTGAAGAT CGTCGACCGCGTAATATCGGCGATACGCTCACGATTGTGTTACAGGAAAACGTCAGCGCC AGTAAAAGCTCGTCGGCAAATGCCAGCCGCGACGGCAAAACCAGCTTTGGTTTTGATACG GTACCGCGTTATCTGCAGGGATTATTCGGTAATTCCCGCGCGGATATGGAGGCCTCCGGC GGCAACTCTTTTAATGGTAAAGGCGGCGCGAATGCCAGCAATACCTTTAGCGGCACGCTG ACCGTGACCGTCGATCAGGTTCTGGCCAATGGCAATTTACACGTCGTGGGGGAAAAACAG ATCGCGATTAATCAGGGAACGGAATTCATCCGCTTCTCCGGCGTGGTAAATCCACGCACC ATCAGCGGTAGCAACTCTGTTCCCTCGACACAGGTGGCGGATGCGCGGATTGAATATGTC GGGAACGGCTATATTAACGAAGCGCAAAATATGGGCTGGCTGCAACGTTTCTTCCTTAAT TTGTCGCCGATGTAAGTGTTTAAAGCTCTTGCAGGAATCGTTCTGGCACTGGTTGCCACT CTGGCGCACGCCGAGCGTATCCGGGATCTGACCAGTGTCCAGGGAGTACGGGAAAACTCG CTGATCGGCTACGGGCTGGTGGTCGGGCTGGACGGTACGGGCGACCAGACGACCCAGACG CCATTTACCACCCAGACGCTGAATAACATGCTGTCACAACTGGGGATTACGGTCCCCACC GGCACCAATATGCAGTTGAAAAACGTGGCGGCGGTGATGGTGACGGCGTCGTATCCGCCT TTTGCGCGACAGGGACAAACGATCGATGTCGTCGTTTCCTCAATGGGGAACGCTAAAAGT CTGCGTGGCGGGACGTTATTAATGACGCCGTTAAAAGGGGTGGACAGCCAGGTGTATGCT CTGGCGCAGGGCAATATTCTGGTCGGCGGCGCGGGCGCTTCCGCAGGCGGCAGTAGCGTG CAGGTTAACCAGCTTAATGGCGGGCGCATCACTAATGGCGCGATTATCGAACGCGAGTTG CCGACTCAGTTCGGCGCTGGCAACACCATTAATCTGCAATTGAACGACGAAGATTTTACG ATGGCGCAGCAAATTACCGACGCCATCAACCGCGCCCGCGGTTACGGCAGCGCCACTGCG CTTGATGCGCGAACGGTACAGGTACGCGTGCCCAGCGGCAACAGCTCGCAGGTGCGTTTT CTGGCGGACATTCAAAATATGGAAGTCAACGTGACGCCGCAGGATGCAAAAGTCGTGATC AACTCGCGTACCGGTTCGGTGGTCATGAATCGGGAAGTCACGCTGGATAGCTGCGCTGTG GCGCAGGGCAATTTGTCAGTGACAGTCAATCGCCAACTCAACGTCAACCAGCCGAATACG CCATTTGGCGGCGGGCAGACCGTGGTGACGCCACAGACTCAGATAGATTTGCGTCAGAGC GGCGGATCGCTACAGAGCGTGCGTTCCAGCGCCAATCTGAACAGCGTAGTGCGCGCGCTG AATGCGCTTGGCGCGACGCCGATGGATCTGATGTCGATTTTGCAGTCCATGCAGAGCGCG GGCTGTCTACGCGCCAAACTGGAAATCATCTGAATGATCGGAGACGGTAAATTGCTGGCC AGCGCGGCCTGGGATGCGCAATCTCTGAACGAACTGAAAGCGAAAGCGGGCCAGGACCCG GCGGCGAATATCCGTCCTGTGGCCCGTCAGGTGGAAGGGATGTTTGTGCAGATGATGCTG AAAAGTATGCGCGAGGCTTTACCCAAAGATGGTTTATTCAGCAGCGATCAGACGCGTCTG TATACCAGCATGTATGACCAGCAGATCGCCCAGCAGATGACCGCCGGTAAGGGATTGGGG CTGGCGGATATGATGGTTAAACAGATGACGGGCGGGCAGACGATGCCTGCAGATGATGCG CCGCAAGTACCGCTTAAATTCTCCCTGGAGACGGTAAACAGCTATCAAAATCAGGCGCTG ACCCAACTGGTGCGCAAAGCCATACCGAAAACGCCGGACAGCAGCGATGCGCCGCTCTCC GGCGACAGTAAAGACTTTCTGGCCCGGCTTTCGCTCCCGGCGAGGCTGGCCAGCGAACAA AGCGGGGTGCCGCATCATCTGATTCTGGCGCAGGCGGCGCTGGAGTCCGGCTGGGGGCAG CGGCAAATCCTGCGGGAGAATGGCGAACCCAGCTATAACGTATTTGGCGTGAAAGCGACC GCCAGTTGGAAAGGGCCGGTGACGGAAATCACCACCACTGAATACGAAAATGGCGAAGCG AAAAAAGTGAAAGCGAAATTCCGCGTCTATAGCTCGTATCTGGAGGCGTTATCGGATTAT GTCGCGCTGTTAACGCGTAACCCACGCTACGCTGCCGTGACCACTGCCGCCACGGCAGAG CAGGGCGCAGTGGCTCTGCAAAACGCCGGATACGCCACTGACCCGAATTACGCGCGTAAA TTGGCCAGCATGATTCAGCAGTTGAAAGCGATGAGTGAAAAGGTCAGCAAAACCTACAGC GCGAATCTCGACAATCTCTTTTAAATGTCCAGCTTGATTAATCACGCCATGAGCGGACTT AACGCCGCGCAGGCCGCGTTAAATACGGTCAGTAATAACATCAACAATTATAACGTTGCG GGTTATACCCGGCAGACAACTATTCTGGCGCAGGCAAACAGTACGTTAGGGGCTGGCGGC TGGATAGGTAATGGCGTTTACGTTTCAGGCGTACAGCGCGAATATGATGCGTTTATCACT AATCAGCTACGCGGCGCGCAAAACCAGAGCAGCGGCTTAACCACGCGCTATGAACAAATG TCGAAAATCGACAACCTGCTGGCCGATAAATCCAGCTCACTGTCTGGCTCGCTGCAGAGT TTTTTTACCAGCCTGCAAACGTTAGTCAGTAATGCGGAAGATCCTGCGGCGCGTCAGGCG CTGATTGGTAAAGCGGAAGGGCTGGTAAACCAGTTCAAAACCACCGATCAGTATCTGCGC GATCAGGATAAACAGGTCAATATCGCGATTGGCTCCAGCGTGGCGCAAATCAACAATTAC GCGAAGCAGATAGCTAACCTGAACGATCAAATCTCCCGTATGACGGGCGTAGGCGCGGGC GCATCGCCGAACGACCTGCTCGATCAACGTGATCAGTTGGTTAGCGAGCTTAACAAGATC GTTGGCGTCGAGGTGAGTGTACAGGACGGCGGCACCTATAACCTGACGATGGCCAATGGC TATACGCTGGTGCAGGGGTCGACGGCGCGTCAGTTGGCGGCGGTTCCCTCCAGCGCCGAC CCGACGCGAACGACTGTCGCTTATGTCGATGAGGCCGCCGGTAACATCGAAATTCCGGAA AAGTTGCTGAACACCGGTTCGCTCGGCGGGCTACTGACGTTCCGTTCTCAGGATCTGGAT CAGACTCGTAATACGCTGGGCCAGTTGGCGTTGGCGTTTGCCGATGCGTTTAACGCGCAG CATACCAAAGGTTATGACGCCGACGGCAATAAAGGGAAAGACTTCTTTAGCATTGGCTCG CCGGTGGTATATAGCAACAGTAATAATGCCGATAAAACGGTATCGCTAACCGCTAAGGTG GTCGACAGCACGAAGGTTCAGGCGACGGATTATAAGATTGTTTTTGACGGTACAGACTGG CAGGTTACTCGCACTGCGGATAACACCACCTTCACGGCAACAAAAGATGCTGACGGAAAA CTGGAGATTGACGGTCTGAAAGTGACGGTAGGGACTGGCGCACAGAAAAACGACAGTTTT CTTCTCAAGCCGGTCAGCAATGCTATCGTCGACATGAACGTTAAAGTGACAAATGAAGCC GAGATTGCGATGGCGTCTGAGTCAAAACTCGATCCTGATGTGGATACCGGCGACAGCGAT AACCGCAATGGTCAGGCATTGCTGGACTTACAAAACAGCAATGTAGTGGGCGGCAACAAA ACCTTTAACGATGCTTACGCCACGTTGGTCAGCGATGTGGGTAACAAAACGTCAACGCTG AAAACCAGCAGCACCACGCAGGCGAATGTGGTTAAACAGCTTTATAAACAGCAACAGTCG GTTTCCGGCGTTAACCTCGACGAAGAGTACGGCAATTTGCAGCGTTATCAGCAGTATTAT CTGGCGAATGCGCAAGTATTGCAGACCGCGAATGCGCTGTTTGATGCGTTATTGAATATT CGCTAAATGCGTATCAGTACCCAGATGATGTACGAACAAAATATGAGCGGCATCACTAAT TCTCAGGCCGAATGGATGAAGCTGGGCGAGCAGATGTCTACCGGTAAGCGCGTTACCAAC CCATCTGACGATCCGATCGCCGCGTCGCAGGCGGTAGTACTCTTTCAGGCGCAGGCGCAG AATAGCCAGTACGCCCTGGCGCGTACGTTTGCCACCCAAAAAGTGTCGCTGGAAGAAAGC GTACTCAGTCAGGTGACGACGGCGATTCAAACCGCGCAGGAAAAAATCGTCTATGCCGGA AACGGCACGTTAAGCGACGATGACCGCGCGTCGCTGGCGACGGATTTACAGGGGATCCGC GATCAGCTGATGAACCTGGCAAACAGCACTGACGGCAATGGTCGCTATATCTTTGCCGGG TATAAAACGGAAGCGGCGCCATTCGACCAGGCGACAGGTGGTTATCATGGCGGCGAGAAA AGTGTTACCCAGCAGGTGGATTCCGCACGCACGATGGTAATTGGCCATACGGGAGCGCAA ATTTTTAATAGCATCACCAGCAATGCGGTGCCGGAACCGGATGGCTCGGACTCCGAAAAG AATCTGTTTGTCATGCTCGATACGGCAATTGCCGCGCTCAAGACCCCGGTGGAAGGCAAT GACGTGGAAAAAGAAAAAGCCGCTGCCGCCATTGATAAAACCAATCGCGGCTTAAAAAAT TCGCTTAATAACGTCCTGACCGTTCGTGCGGAACTGGGAACGCAACTGAGCGAACTCAGT ACGCTGGATTCACTGGGAAGCGACCGTGCGCTGGGACAGAAGCTACAGATGAGCAACCTG GTAGATGTGGACTGGAACTCGGTCATTTCCTCCTACGTCATGCAACAGGCGGCATTACAG GCGTCCTATAAAACGTTTACCGACATGCAGGGAATGTCGCTTTTCCAGTTGAACCGGTAA ATGGAGATAATTTTTTATCACCCGACATTTAACGCCGCCTGGTGGGTAAATGCGCTGGAG AAGGCTCTCCCACATGCGCGCGTTCGTGAATGGAAGGTCGGTGATAACAACCCCGCAGAC TATGCGCTTGTATGGCAGCCCCCGGTTGAAATGCTGGCCGGAAGACGCTTAAAAGCCGTC TTTGTGCTGGGCGCGGGGGTGGATGCAATTCTGAGTAAATTAAATGCGCATCCGGAAATG CTGGACGCCTCCATTCCTCTATTCCGTCTGGAAGATACCGGAATGGGCCTGCAAATGCAG GAGTATGCCGCCAGCCAGGTATTACACTGGTTCCGTCGTTTCGATGATTATCAGGCGCTG AAAAATCAGGCGCTATGGAAACCGTTGCCGGAATATACCCGCGAAGAGTTTAGCGTCGGT ATCATAGGCGCAGGGGTACTGGGCGCAAAAGTGGCAGAAAGTCTACAGGCGTGGGGGTTC CCGTTACGTTGCTGGAGTCGTAGCCGCAAATCCTGGCCTGGCGTGGAAAGTTATGTAGGG CGTGAAGAACTGCGCGCTTTCCTGAACCAGACGCGGGTGCTGATTAATCTGCTGCCGAAT ACGGCCCAAACGGTAGGAATTATTAATAGCGAATTGTTGGATCAATTGCCGGATGGCGCT TACGTGCTGAATCTCGCGCGCGGCGTTCATGTTCAGGAGGCGGATCTGCTGGCTGCGCTT GATAGCGGTAAGCTAAAAGGCGCGATGTTGGATGTCTTTAGCCAGGAACCGTTACCGCAG GAAAGTCCATTATGGCGCCATCCGCGAGTCGCCATGACGCCGCACATTGCGGCAGTCACC CGTCCGGCGGAAGCCATCGATTATATTAGCCGCACCATTACCCAGCTGGAGAAGGGAGAG CCGGTGACGGGGCAGGTGGATCGGGCGAGAGGATATTGGATGTCCGTAATCAAGAAAAAT ATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATCCATTCTGCGGTAGGGCAACAA ACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATTGTTGAGCCACTGTGCGATATT TCTACTCACGCCGAAAATATTGATTTAACCTGCCTACGCGAAGGTAAAAAGCAAATGCAC CGGATAGACCTTCGGCAGGCATCTGGATTACCGCAGGATATTCAGTCCATTGCGACGGTA CGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTGATGAATATTGAGTACCGTTAA ATGGCAAACCATCGTGGCGGTTCCGGTAATTTTGCGGAAGACCGCGAAAGAGCATCAGAA GCAGGTCGTAAAAGTGGTCAGCACAGCGGGGGCAATTTTAAGAATGACCCGCAGCGTGCA TCCGAAGCAGGCAAAAAAGGGGGCAAAAGCAGTAACCGTAATCGCTAGATGGTAATGTCC GCACCAGGACACATTGTTTACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGT GGTGGTCTTGTCATCTTAAAAGCTCTCATCATTTCCCTTACTGTCCATACCCATGACGCC ATATGTGGTGCGCGTAGCCGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAG GAAGCCAACCCTCAGATGTGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTAT ACCTACAACTCAAGGTGCTATCCATGGGAAGACAAAAAGCAGTGAATGAAACGAATTTTC CTTACCTGCGCGGCGTTGTTGTTCAGCAGTCAGGCGTTGGCCGATGAGTGTGCCAGCGCC AGTACGCAGCTGGAAATGAATCGCTGCGCCGCCGCGCAATACCAGGCGGCAGATAAAAAG CTGAACGAAACCTATCAAAGCGCGATTAAGCGTGCGCAACCGCCGCAGCGTGAGCTATTG CAAAAAGCGCAGGTGGCATGGATTGCCCTGCGCGACGCCGATTGCGCGCTGATTCGCTCA GGTACGGAGGGCGGCAGCGTTCAACCCATGATCGCCAGCCAGTGCCTGACCGATAAAACG AACGAACGCGAAGCGTTTTTAGCCTCGCTGCTGCAATGTGAAGAGGGTGATTTGAGCTGC CCACTGCCGCCAGCCGGTTAAGTGCGTATATTCGCGGTGAGCATAATGGTGATTACCCTG AGCGGCTGCGGCAGTATTATCAGCAGAACGATCCCCGGACAAGGACACGGCAACCAGTAT TACCCTGGCGTGCAGTTGGATATGCGTGATTCCGCATGGCGCTATATCACTATCCTCGAT CTGCCCTTCTCACTGATCTTCGATACACTGCTACTGCCGCTCGATATTCACCACGGGCCT TATGAGTAAATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGACGAA AGCATGGGCAGTAACGATGTGCATTATCAGTCGTTTGCTCGTATGGCGGATTTCTTTGGT CGTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTCTTGATACCGGG CAGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTGCTA ACGCCGCCCTCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTTCTG ACGGTACGCGAAGAGCTGGTTTGGCCGCTGCTGGAAGTGCTTTATCCCGGCACCAGAGAG GCCTTCGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACGAGCTGGCGGCG CTCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGCGAA CATACCTTGGTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAGCTG GACGATCATGCCGCAACCGGGATGCGCGGTGAACTGAAACTTTTTCAGCGCTTTACCCTG TTAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCTGTGAGTTGCAT ATTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAACGC CTGATTTTTGATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAATGCT GTCAACGAGATCGCCTGGCAATTAGGTTTTAAAGATCCGGCTTATTTCGCCCGTTTCTTT AATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTCCTTCTTTTCTC AACTAAATGGGACGCACACCGGATTACAAAGCCGCCTTTGGCTGCGCTCTGGGCGCTAAC CCAGCCTTCTACGGCCAGTTTGAGCAGAACGCCCGTAACTGGTACACCCGTATTCAGGAG ACCGGCCTGTACTTTAACCATGCAATCGTCAACCCGCCCATTGACCGCCACAAACCTGCC GACGAAGTGAAAGACGTCTATATCAAGCTGGAGAAAGAGACGGACGCCGGGATTATTGTC AGCGGGGCGAAAGTTGTCGCCACTAACTCCGCCCTGACTCACTACAACATGATTGGTTTC GGCTCAGCCCAGGTGATGGGCGAAAACCCGGATTTTGCTCTGATGTTTGTCGCGCCAATG GATGCCGAAGGCGTAAAACTTATTTCGCGCGCCTCGTATGAAATGGTCGCGGGCGCGACG GGCTCGCCGTTTGATTATCCCCTCTCCAGCCGTTTTGATGAAAACGATGCCATTCTGGTG ATGGACAAGGTGCTGATCCCGTGGGAAAACGTATTAATTTACCGTGATTTCGATCGTTGT CGTCGCTGGACGATGGAAGGCGGCTTTGCCCGTATGTATCCACTGCAAGCCTGTGTTCGT CTGGCGGTAAAACTTGATTTCATTACCGCGCTGCTGAAAAAATCGCTCGAATGTACGGGT ACCGTAGAGTTCCGGGGCGTGCAGGCCGATCTCGGCGAAGTCGTGGCCTGGCGCAATATG TTCTGGGCATTGAGCGATTCTATGTGTTCTGAAGCAACCCCGTGGGTAAACGGCGCCTGG CTACCGGACCACGCCGCGCTGCAAACCTATCGTGTGATGGCCCCAATGGCCTACGCGAAA ATTAAAAATATTATTGAACGTAACGTTACCAGCGGCCTGATTTACCTGCCTTCCAGCGCC CGCGATCTGAATAATCCGCAAATCGACCAGTACCTGGCGAAATACGTACGCGGCTCTAAC GGAATGGACCATGTTGAACGTATCAAAATTCTTAAATTGATGTGGGATGCCATCGGCAGC GAGTTTGGCGGTCGCCATGAGCTGTACGAGATTAACTACTCGGGCAGCCAGGATGAAATT CGTCTGCAGTGTCTGCGTCAGGCCCAGAGCTCCGGCAATATGGATAAGATGATGGCAATG GTCGATCGCTGCCTCTCCGAATACGATCAGAATGGCTGGACGGTTTCGCATTTGCACAAT AACGACGACATCAATCAACTGGATAAGCTGCTGAAATAAATGCAAGTAGATGAACAACGT CTGCGTTTTCGCGATGCGATGGCAAGTCTGGCGGCAGCGGTCAACATCGTAACCACGGCG GGTCACGCCGGACGCTGCGGTATCACCGCAACAGCGGTTTGCTCAGTCACTGATACGCCG CCCTCCGTGATGGTATGTATTAATGCCAATAGCGCCATGAACCCCGTTTTTCAGGGCAAC GGCAGGCTGTGCATTAATGTACTTAACCATGAGCAGGAGCTGATGGCGCGCCACTTTGCC GGTATGACGGGGATGGCGATGGAGGAGCGTTTTCACCAGCCATGTTGGCAAAACGGGCCG CTGGGCCAGCCGGTACTTAACGGCGCGCTGGCCAGTCTTGAAGGCGAGATCAGCGAGGTA CAAACCATTGGCACGCATCTGGTGTATCTGGTGGCGATCAAAAATATTATTCTTAGCCAG GAGGGGCATGGCCTGATTTATTTCAAACGCCGTTTTCATCCGGTCAGACTTGAGATGGAA GCGCCTGTTTAAATGAAGGGTACTGTTTTCGCCGTTGCGTTAAACCATCGCAGCCAGCTT GATGCCTGGCAAGAGGCTTTCTCTCAGCCTCCCTATAATGCGCCGCCTAAAACCGCAGTG TGGTTCATCAAGCCGCGTAATACGGTGATTCGTCACGGCGAACCCATTCCTTATCCGCAG GGAGAAAAGGTACTGAGCGGCGCGACAGTGGCGCTCATTGTGGGGAAAACCGCCAGCCGG ATACGCCCTGAAGCGGCGGCGGACTATATCGCCGGGTATGCGCTGGCTAACGAGGTCAGC CTGCCGGAAGAGAGCTTTTATCGCCCGGCGATTAAAGCGAAATGTCGCGATGGCTTTTGC CCGCTGGGTGAAATGGCGCCGCTGAGTGATGTGGATAATCTCACCATTATCACTGAAATC AACGGACGAGAAGCGGACCACTGGAATACTGCCGATTTACAGCGTAGCGCCGCACAACTG CTTAGCGCGTTAAGTGAGTTCGCTACACTTAACCCTGGCGATGCGATCTTACTTGGTACG CCGCAGAATCGCGTTGCGCTGCGTCCCGGCGATCGGGTGCGTATTCTGGCGAAAGGTTTA CCCGCGCTGGAAAATCCGGTTGTCGCAGAAGATGAATTCGCCCGCCACCAGACGTTTACG TGGCCGCTGTCAGCGACGGGAACGTTATTTGCGCTGGGGTTGAACTACGCCGATCACGCC AGCGAGCTGGCATTTACGCCGCCGAAAGAGCCGCTGGTATTTATCAAAGCGCCAAACACC TTTACCGAACATCACCAAACGTCGGTGCGCCCGAACAACGTCGAATATATGCACTACGAA GCCGAGCTGGTCGTGGTGATTGGCAAAACGGCGCGTAAGGTGAGCGAAGCCGAAGCCATG GAGTATGTGGCCGGTTACACCGTCTGTAACGACTACGCGATCCGCGACTATCTGGAAAAC TACTACCGTCCGAATCTGCGGGTAAAAAGCCGCGACGGCCTGACGCCGATAGGCCCGTGG ATTGTGGATAAAGAGGCGGTTTCTGATCCGCACAACCTGACGTTACGCACCTTTGTCAAC GGTGAGCTGCGGCAGGAAGGGACGACCGCCGATCTGATCTTCAGCATCCCGTTCCTGATT TCTTATCTGAGCGAATTTATGACGTTGCAACCGGGCGACATGATTGCCACCGGTACGCCG AAAGGGCTGTCCGATGTGGTGCCGGGGGATGAAGTTGTCGTTGAAGTAGAAGGCGTGGGT CGCCTGGTTAACCGAATCGTCAGTGAGGAGAGCGCAAAATGAATGAAAAATGCTTTCAAA GACGCGTTAAAAGCGGGGCGCCCGCAAATCGGTTTGTGGCTGGGGCTTGCCAACAGTTAC AGCGCTGAACTGTTAGCGGGCGCCGGCTTCGACTGGCTACTGATTGACGGTGAACACGCG CCAAACAACGTGCAGACGGTGTTGACCCAGTTGCAGGCGATTGCGCCTTATCCCAGCCAG CCGGTGGTGCGTCCGTCATGGAACGATCCGGTACAGATTAAGCAACTGCTCGACGTCGGC GCGCAAACGCTGCTGATACCGATGGTGCAGAATGCCGATGAAGCGCGAAACGCCGTGGCG GCTACGCGTTATCCGCCTGCCGGTATTCGCGGCGTGGGCAGCGCGCTGGCGCGGGCATCG CGCTGGAATCGCATTCCGGACTATCTCCACCAGGCCAACGACGCCATGTGCGTACTGGTG CAGATTGAAACGCGTGAGGCGATGAGCAATCTGGCGTCAATTCTCGACGTGGATGGCATT GACGGCGTGTTTATTGGCCCGGCGGATCTCAGCGCCGATATGGGCTTTGCCGGCAATCCG CAGCACCCGGAAGTGCAGGCGGCGATTGAGAACGCCATCGTGCAGATACGCGCGGCGGGG AAAGCGCCGGGGATTCTGATGGCCAATGAAGCACTGGCGAAACGTTATCTGGAACTGGGG GCGCTATTTGTCGCCGTCGGCGTTGACACCACGCTGCTGGCGCGCGGAGCGGAGGCGCTG GCGGCGCGCTTTGGCGCAGAAAAAAAACTGTCCGGTGCGTCCGGCGTCTATTAAATGCAT GATTCATTAACCATCGCCTTGCTTCAGGCGCGCGAAGCGGCAATGACCTATTTCCGCCCC ATCGTTAAAAGCCACAATCTGACCGACCAGCAATGGCGCATTGTGCGAATCCTGGCCGAT AGCCCCTCTATGGATTTTCACGAGCTGGCCTTTCGTACCTGTATTTTGCGTCCAAGTCTG ACCGGAATATTGACGCGCATGGAGCGAGACGGACTGGTGTTGCGACTCAAGCCGGTTAAC GATCAGCGTAAGTTATATGTCATGTTGACGGAGCAGGGACAAACGTTGTACGCCCGTGCC CGGAGCGAGGTAGAAGAGGCTTATCGAAAAATTGAGGCCGATTTCACGCCCGAAAAAACA CAGCAATTGATGCTGCTGCTGGACGATCTTATTGCTCTGGGGCGCCAGCATCCTGATAGC GAAGCGGAAGCATAGATGAGCGACACATCATCTGCACTTCCGGAAAGCCCCGAGTCTGTC GGTTCGCACAACGCGCTCAGCACGGGTCAACAAACCGTCATAAATAAACTGTTCCGCCGA CTGATCGTATTTTTATTCGTGTTGTTTATCTTCTCGTTTTTAGACCGTATCAACATCGGT TTTGCCGGGTTGACGATGGGGCAGGATCTGGGGTTAAGCGCCACCATGTTTGGTCTTGCC ACGACGCTGTTTTACGCCACCTACGTCATTTTCGGCATTCCCAGCAACGTGATGTTGAGC ATCGTCGGCGCCCGCCGCTGGATTGCGACCATTATGGTGCTATGGGGCATTGCATCTACC GCCACGATGTTCGCGGTGGGACCGAAAAGCCTGTATGTGCTGCGAATGCTGGTGGGCATT ACCGAAGCGGGCTTTTTGCCAGGAATATTGCTCTATTTAACCTACTGGTTCCCGGCATTT TTCCGCGCCCGCGCCAACGCATTATTTATGATTGCCATGCCGGCCACTACCGCGTTGGGG TCAATTGTCTCCGGCTATATTTTATCGCTGGACGGCATATTCAATCTGCATGGATGGCAG TGGTTATTCCTGTTGGAAGGATTTCCGTCAGTTTTGTTAGGCATTATGGTCTGGTTTTAC CTGGATGATACCCCGGCAAAAGCCAAATGGCTGACGGCAGAGGATAAAAAATGTTTGCAG GAGATGATGGATAATGATCGCCTGACGCTGGTTCAGCCTGAGGGGGCCATCAGCCATAAC GCCATGCAGCAGCGTAGCCTGTGGCGCGAAGTATTCACGCCAATTGTACTGATGTATACG CTGGCCTATTTTTGCCTTACCAATACGCTTAGCGCCATTAGTATCTGGACGCCGCAAATC CTGAAAAGTTTTAATGAAGGCAGCAGCAATATCACCATCGGCCTGCTGGCGGCGATCCCG CAGATTTGTACTGTTCTGGGCATGATTTACTGGAGCCGCCATTCGGACAAACATCAGGAG CGTAAACACCACACTGCGTTACCGTTCCTGTTTGCCGCCGCGGGCTGGCTGCTGGCGTCG GCGACCGACCGTAACCTGATCCAGCTCCTGGGGATCGTGATGGCATCCACGGGTTCCTTT AGCGCGATGGCGATCTTCTGGACCACGCCGGATCAGTCGATCAGTTTACGCGCCAGGGCG ATAGGCATTGCGGTCATCAATGCCACCGGCAATATTGGCTCCGCGCTCAGCCCGGTTATG ATTGGCTGGCTAAAAGATATCACTGGTAGCTTCAATAGCGGACTCTGGTTTGTCGCTTCT CTGTTAGTCGTCGGCGCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCGCGC GCCACCCCTTGAATGGGCAAGTTAGCGTTAGCAGCAAAAATTACCCACGTGCCGTCGATG TATCTTTCTGAACTGCCAGGAAAAAATCACGGTTGTCGTCAGGCAGCCATTGATGGGCAT ATTGAAATTGGCAAGCGTTGCCGCGAAATGGGCGTTGACACCATTATCGTATTCGACACC CACTGGCTGGTGAATAGCGCTTACCACATTAATTGTGCCGACCATTTCCAGGGCGTCTAT ACCAGCAACGAATTGCCGCACTTTATTCGCGACATGACCTATGACTATGACGGTAATCCG GCGCTCGGCCATCTGATCGCCGACGAGGCGGTCAAACTGGGCGTGCGCGCCAAAGCGCAC AACATCCCGAGCCTGAAGCTGGAGTATGGCACGCTGGTGCCGATGCGCTACATGAACAGC GACAAGCACTTCAAAGTGGTCTCCATCTCGGCGTTCTGCACTGTGCATGATTTTGCCGAC AGCCGCAAACTGGGCGAAGCCATTCTCAAGGCGATTGAGAAATATGACGGTACCGTAGCG GTATTCGCCAGTGGTTCTCTGTCGCACCGTTTTATTGACGACCAACGGGCGGAAGAGGGG ATGAACAGCTACACCCGCGAGTTCGATCATCAAATGGACGAGCGCGTGGTCAAGCTGTGG CGCGAAGGCAAATTCAAGGAGTTTTGCACCATGTTGCCGGAGTACGCCGACTACTGCTAC GGCGAAGGCAACATGCACGACACGGTCATGCTACTGGGAATGCTGGGGTGGGACAAATAC GACGGCAAGGTGGAGTTCATCACCGACCTGTTCGCCAGCTCCGGTACCGGCCAGGTAAAC GCTGTTTTCCCGCTGCCTGCGTAAATGAAGAAAATAAATCATTGGATTAACGGCAAAAAC GTTGCAGGTAACGACTACTTCCAGACCACTAACCCGGCGACCGGTGATGTGCTGGCGGAA GTAGCCTCCGGCGGTGAAGCAGAAGTGAACCAGGCTGTCGCGGCGGCAAAAGAGGCGTTC CCGAAATGGGCCAACCTGCCGATGAAAGAGCGCGCGCGCCTGATGCGCCGCCTTGGCGAC CTGATTGACCAGCATGTGCCGGAAATCGCGGCGATGGAAACCGCCGACACCGGCCTGCCT ATTCACCAGACTAAAACGTGCTGAGTGCTGATCCCGCGCGCCTCGCATAACTTCGAATTC TTCGCCGAAGTGTGCCAGCAGATGAACGGCAAGACCTATCCGGTTGACGATAAAATGCTC AATTATACGCTGGTGCAGCCCGTCGGCGTCTGCGCGCTGGTGTCGCCGTGGAACGTGCCG TTTATGACCGCGACTTGGAAAGTTGCGCCGTGCCTGGCGCTGGGTAACACCGCGGTGCTC AAAATGTCCGAGCTGTCGCCGCTGACTGCCGACAGGCTGGGCGAGCTGGCACTGGAGGCA GGAATTCCGGCAGGCGTGCTGAACGTGGTGCAGGGCTACGGCGCGACGGCGGGCGATGCG CTGGTACGCCACCATGACGTGCGTGCGGTGTCGTTTACCGGCGGTACCGCCACCGGTCGC AATATCATGAAAAATGCCGGGCTGAAAAAATACTCGATGGAGCTGGGCGGCAAATCGCCG GTGCTGATTTTTGAAGACGCCGACATTGAGCGCGCGCTGGACGCCGCGCTGTTCACCATC TTCTCGATCAACGGCGAACGCTGCACCGCTGGGTCGCGCATCTTTATCCAGCAGAGCATT TACCCTGAGTTCGTGAAGCGCTTTGCCGAACGCGCGAATCGCCTGCGTGTCGGCGATCCG ACCGACCCGAACACCCAGGTCGGCGCGCTGATTAGCCAACAGCACTGGGAGAAAGTCTCC GGTTATATCCGCCTCGGCATTGAAGAGGGGGCAACGCTGCTGGCGGGCGGTGCGGAAAAA CCCACTGACCTGCCTGCGCATCTGAAAGGCGGTAACTTCCTGCGCCCAACCGTGCTGGCC GATGTCGACAACCGTATGCGCGTTGCGCAGGAAGAGATCTTTGGGCCGGTCGCCTGCCTG CTGCCATTCAAAGACGAAGCGGAAGGGTTACGTTTGGCGAACGATGTGGAATACGGTCTG GCCTCTTATATCTGGACCCAGGACGTGAGCAAAGTGTTGCGCCTGGCGCGTGGGATTGAA GCCGGCATGGTCTTCGTCAACACCCAGAACGTCCGCGACCTGCGCCAGCCGTTCGGCGGC GTGAAAGCCTCCGGTACCGGGCGCGAAGGCGGCGAATATAGCTTCGAAGTGTTTGCGGAA ATGAAAAACGTCTGCATCTCAATGGGCGACCATCCTATCCCAAAATGGGGAGTTTGAATG CCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCAAGCCTG TTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGGATTTTCCCCATCGGCGGTATCCGC AGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTGACGGTAAGCATGATTACGCGTTT GTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGC GAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTG GCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACGCTCAATTACAAACAAAACAACGTA CACGCGTTATTTAAATAGATGCTCGATAAACAGACCCATACCCTGATCGCTCAGCGACTT AATCAGGCTGAAAAACAGCGTGAACAGATTCGCGCAGTGTCGCTGGATTATCCCAACATC ACTATTGAAGATGCCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATTGCCGAAGGG CGCACGCTCAAAGGCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAA ATCAGCGAACCGGATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGAGAT ATCCCCACCGACCGTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCG AAACCGCTGCGCGGCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTG ATTCCGGCGCTGGAACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGC CCGCGCAAAGTGTTCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGT GGTCGCCCCATCAAACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGC AACGGCGTGATCGAAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGC GTGGCGTGGCTGGCGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATC ATCCTCGGCGGCTCGTTCACCCGCCCGGTGCCGGCGCGCAAGGGCGACACCTTCCATGTC GATTACGGCAACATGGGCGCGATCAGTTGCCGGTTTGTGTAAATGAGCTCTGTACCCGCG CCGCGTGAATATTTTCTTGACTCTATCCGCGCATGGCTGATGTTGTTAGGGATTCCCTTT CATATCTCGTTGATCTATTCCACTCACAGTTGGCATGTCAATAGCGCCGCGCCATCGTGG TGGCTAACCCTGTTTAACGATTTTATCCACGCTTTTCGTATGCAGGTGTTTTTTGTTATT TCTGGTTATTTTTCGTACATGTTATTTTTACGTTATCCATTAAAACACTGGTGGAAAGTA CGGGTAGAACGTGTGGGTATTCCCATGCTTACCGCAATCCCTTTGCTTACCTTGCCGCAA TTTATCCTGTTGCAATATGTCAAAGAGAAAACAGAGAACTGGCCTACACTCTCTGCCTAT GAAAAATATAATACGTTAGCGTGGGAACTCATTTCACATCTGTGGTTTTTACTGGTGCTG GTGATATTAACCACCGTCAGCATCGGGATTTTTACCTGGTTCCAAAAAAGGCAGGAAACA AGCAAGCCTCGTCCCGCCGCTATTTCGCTGGCCAAACTTTCGCTTATTTTTTTCCTGCTG GGGGTGGCGTACGCTGCTATCAGGCGCATTATATTCATCGTATATCCGGCAATCCTCAGT GACGGCATGTTCAATTTTATTGTGATGCAAACGCTATTTTATGTGCCGTTTTTTATTCTC GGCGCGTTGGCCTTCATTCACCCCGATCTGAAAGCGCGCTTCACCACGCCCTCACGCGGA TGCACTTTAGGCGCTGCCGTTGCTTTTATCGCGTATCTGCTGAATCAACGTTATGGGAGC GGCGACGCCTGGATGTACGAAACCGAATCCGTGATTACGATGGTAATGGGGCTATGGATG GTGAACGTGGTATTTTCACTGGGGCATCGCTTGTTAAACTTTCAGTCCGCGCGTGTCACC TATTTCGTGAATGCTTCGCTGTTTATTTATCTGGTGCATCATCCCTTAACGCTTTTCTTT GGCGCGTATATTACACCGCATATCTCCTCCAACCTGATCGGGTTCTTGTGCGGGCTGATA TTTGTTATGGGTATTGCGTTAATTCTGTATGAAATTCATTTACGCATCCCGCTCCTGAAA TTTCTCTTTTCAGGTAAACCGCCGGTAAAACAAGAAAGCCGCGCCGCGATCGGGTAGATG AAACATAAACGACAAATGATGAAAATGCGTTGGTTGGGCGCAGCTATTATGTTAACGCTC TACGCATCATCGAGCTGGGCGTTCAGTATTGATGACGTGGCAAAACAAGCTCAATCTTTA GCCGGGAAAGGCTATGAGGCGCCTAAAAGCAACTTGCCCTCCGTTTTCCGCGACATGAAA TATGCGGATTATCAGCAGATCCAGTTTAACAGCGATAAAGCCTACTGGAACAACTTAAAG ACCCCTTTTAAGCTCGAATTTTACCATCAGGGGATGTACTTCGATACGCCGGTCAAGATT AACGAAGTGACGGCGACGACGGTCAAAAGAATCAAATACAGCCCGGATTACTTCAATTTT GGCAATGTTCAGCACGATAAAGACACGGTAAAAGATTTAGGCTTCGCCGGGTTCAAAGTC CTGTACCCCATTAACAGTAAAGATAAGAACGACGAAATCGTCAGTATGCTTGGCGCCAGC TATTTCCGCGTTATCGGCGCAGGCCAGGTGTATGGCTTATCTGCGCGCGGCCTGGCGATT GATACCGCCTTACCATCTGGTGAAGAGTTTCCCCGCTTTCGCGAGTTCTGGATTGAGCGT CCAAAACCCACCGATAAGCGTTTGACCGTCTATGCATTACTGGATTCTCCGCGCGCGACC GGCGCTTACCGTTTTGTGATCATTCCTGGCCGCGATACCGTGGTGGACGTGCAGTCAAAA GTCTATCTGCGCGATAAGGTGGGCAAGCTGGGCGTTGCGCCATTAACCAGTATGTTCCTG TTTGGGCCAAACCAGCCGTCGCCGACGACCAACTATCGTCCGGAATTGCATGACTCGAAC GGCTTATCCATTCATGCGGGTAATGGCGAGTGGATTTGGCGTCCGCTGAACAATCCAAAA CACCTCGCTGTGAGCAGCTATGCGATGGAAAACCCTCAGGGATTCGGCCTGTTGCAGCGT GGTCGCGAGTTCTCGCGCTTTGAAGATTTAGACGATCGCTATGACCTGCGTCCAAGCGCC TGGATTACCCCGAAAGGCGACTGGGGCAAAGGTAAGGTTGAACTGGTTGAAATTCCGACC AATGATGAAACCAACGATAACATCGTCGCTTACTGGACTCCGGATCAACTGCCGGAACCG GGTAAAGAGATGAACTTCAAGTACACTCTGACCTTCAGCCGCGATGAAGATAAACTTCAT GCGCCGGATAATGCCTGGGTGCTGCAAACACGCCGCTCAACGGGCGACGTTAAACAGTCG AATCTGATTCGCCAGCCCGACGGCACTATTGCCTTTGTGGTGGATTTCGTTGGCGCCGAC ATGAAAAAACTGCCGCCGGATACGCCCGTCGCTGCACAAACCAGCATTGGCGATAACGGT GAAATCGTTGACAGTAATGTACGCTATAACCCAGTCACTAAAGGCTGGCGTTTAATGCTG CGCGTGAAAGTCAAAGACGCGAAGAAAACCACGGAAATGCGTGCCGCATTGGTGAATGCC GATCAGACGCTAAGTGAAACCTGGAGCTACCAGTTACCTGCCAATGAATAAATGAATAAA ACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCATTGCCGAAA ACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTACTCGCGAGAA GACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCGGATTCATTG GCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCTATGCCAAAA GCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGCCGTTTCTGG GATCGCCTGCGTGGGCGGGATGTTACGCCGCGCTATGTTTCTCGTCTGACAAAAGAAGAG CAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATTTTGTTAATT TTGACTCTGGCGCAAACCGTCGTTGCGACCTGGTATATGAAGACCATTCTGCCCTATCAG GGATGGGCGCTCATCAATCCTATTGATATGGTGGGGCAGGATATTTGGGTCTCCTTTATG CAGCTCCTGCCCTACATGCTGCATACCGGTATCCTGATTTTGTTTGCCGTGCTGTTCTGC TGGGTGTCTGCCGGATTCTGGACTGCGCTGATGGGCTTCCTGCAACTGCTTATCGGGCGC GATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCGGAACACCAG ACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCCGGTCTGCGC GCGACCTGGGAGTCCGTTAAAGCTACAGGCAACGCCGCGCATTTTGACGTCTATATCCTT AGCGATAGTTATAACCCGGATATTTGCGTGGCGGAGCAAAAGGCGTGGATGGAGCTCATC GCGGAAGTGCAGGGCGAAGGCCATATTTTTTACCGTCGCCGCCGCCGCCGTATGAAACGC AAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGCTATATGGTG GTGCTGGACGCGGACTCAGTGATTAGCGGCGAGTGTCTGAGCGGGCTGGTGCGCCTGATG GAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGGATGGATACT CTGTATGCCCGCTGCCAACAGTTTGCGACCCGTGTTTATGGACCGCTGTTTACCGCCGGG CTGCACTTCTGGCAGTTGGGGGATTCGCACTACTGGGGGCACAATGCCATTATCCGCGTG AAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCGTTCGCCGGA TCGATTCTTTCCCACGACTTTGTTGAGGCGGCGCTAATGCGTCGGGCAGGGTGGGGCGTC TGGATTGCCTACGATCTCCCCGGTTCCTATGAAGAGCTGCCGCCAAACCTGCTGGATGAG CTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTGTTCCTGGTG AAAGGAATGCACCCGGTGCATCGTGCCGTGTTCCTGACCGGGGTAATGTCATACCTGTCC GCGCCGTTATGGTTTATGTTCCTTGCGCTTTCTACCGCGCTGCAGGTCGTTCATGCGTTA ACAGAGCCGCAATATTTCCTTCATCCGCGCCAGCTTTTTCCGGTCTGGCCGCAGTGGCGT CCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTGCCGAAGCTG CTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTCTGGCGCGTT ACGCTGTCGCTATTGCTGGAAGTTCTGTTCTCCGTGTTGCTGGCGCCGGTGCGTATGCTG TTTCATACCGTGTTTGTGGTCAGTGCGTTCCTCGGCTGGGAAGTGGTCTGGAACTCACCG CAACGCGACGATGATTCTACGCCTTGGGGAGAAGCCTTTATGCGTCACGGCTCTCAACTG CTGCTGGGGCTGGTCTGGGCGGTTGGTATGGCGTGGCTGGATTTACGCTTTCTGTTCTGG CTGGCGCCGATTGTCTTTTCGCTTATTCTGTCGCCATTTGTTTCGGTGATCTCCAGTCGT TCAACGGTAGGATTACGCACCAATCGCTGGAAGCTGTTCCTGATCCCGGAAGAGTATTCG CCGCCTCAGGTGTTGGTCGATACTGATAAATATCTGGAGATGAATCGCCGCCGTATTCTG GACGATGGCTTTATGCATGCGGTTTTTAACCCGTCGCTTAATGCGCTGGCGACCGCGATG GCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGTCATGTGGAG CAGGCGCTAAACGAAACGCCGGATAAACTGAACCGCGATCGGCGTCTGGTTTTGCTCAGC GATCCGGTGACGATGGCGCGTTTTCACTATCGGGTCTGGAATGCGCCAGAGAGATACTCT TCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAGGGACGAACA TCGTCAGCGGGATAAATGTCGCGCGTCTCGNNNGCGAGGAACCTGGGTAAATATTTTCTT CTCATCGATAACATGTTAGTGGTGCTGGGTNNNTTCGTCGTCTTCCCGCTCATCTCTATT CGCTTTGTCGATCAAATGGGGTGGGCTGCCNNNATGGTAGGGATCGCGCTCGGCCTGCGT CAGTTTATTCAACAAGGTCTGGGCATTTTTNNNGGCGCCATCGCCGATCGCTTTGGCGCG AAACCGATGATTGTCACCGGTATGCTGATGNNNGCCGCAGGCTTTGCCACCATGGGTATC GCGCATGAGCCCTGGCTCTTGTGGTTTTCCNNNTTTCTTTCCGGTCTCGGCGGTACGCTT TTCGACCCGCCGCGTTCAGCGCTGGTGGTCNNNTTAATTCGTCCGGAGCAACGGGGCCGC TTCTTCTCTCTGTTGATGATGCAGGACAGCNNNGGCGCGGTGATTGGCGCGCTGCTGGGA AGCTGGTTGCTACAATACGATTTTCGCCTGNNNTGCGCGACGGGCGCTATTTTGTTCATA TTATGCGCCCTTTTCAACGCATGGCTGCTTNNNGCCTGGAAGCTATCAACGGCCAGAACG CCGGTGCGTGAAGGAATGCGCCGCGTCATGNNNAATAAAAGGTTTGTCACCTACGTGCTG ACGCTGGCGGGCTACTATATGCTGGCGGTANNNGTCATGTTAATGCTGCCGATTATGGTA AACGATATCGCCGGTTCGCCTGCTGCCGTGNNNTGGATGTACGCTATTGAGGCGTGTCTC TCGCTGACGTTGCTCTACCCGATTGCCCGCNNNAGCGAAAAGCGTTTTCGGCTGGAGCAT CGGCTGATGGCCGGTTTGCTCGTCATGTCGNNNAGCATGCTCCCCATCGGGATGGTGGGC AATTTACAGCAGCTTTTTACGCTTATTTGCNNNTTCTACATCGGCTCGGTTATCGCCGAA CCGGCGCGCGAAACGCTCAGCGCGTCGCCCNNNGACGCGAGGGCGCGGGGAAGCTATATG GGCTTTAGCCGTCTGGGATTAGCCATTGGCNNNGCGATTAGTTATATCGGCGGCGGCTGG TTGTTTGATATGGGTAAAGCGCTTGCGCAGNNNGAACTACCGTGGATGATGCTCGGTATT ATCGGCTTTATCACCTTTTTGGCTTTAGGCNNNCAATTTAGTCATAAGCGCACGCCGCGC CGGATGCTGGAACCCGGCGCCATGACCAAGTATGCCACGCTGGAAGAAGCTATCGATGCA GCCCGGGAAGAATTTCTGGCTGACCATCAAGGCCTCGAACAAGACGAAGCGAATGTGCAG CAGTTCAACGTTCAGAAATATGTACTGCAGGATGGGGACATCATGTGGCAGGTCGAATTT TTCGCCGATGAAGGTGAAGATGGCGAATATCTGCCGATGCTGAGTGGTGAAGCCGCACAG AGCGTGTTTGACGGCGATTATGATGAGAAAGAGATCCGCCAGGAATGGCAGGAAGAGAAT ACTTTGCATGAATGGGATGAAGGGGAATACCAGCTTGAACCCCCGCTTGATACCGAGGAA GGCCGTACTGCGGCAGACGAATGGGATGAGCGTTAAATGTCACTATTAGCCAGGCTGGAA CAAAGTGTACACGAAAACGGTGGGCTGATTGTCTCATGCCAACCGGTACCAGGCAGCCCT ATGGATAAACCTGAAATTGTGGCTGCAATGGCACAGGCAGCGGCTTCGGCGGGTGCGGTC GCTGTGCGCATTGAAGGCATTGAGAATCTGCGGACTGTTCGTCCCCATCTTTCTGTTCCT ATTATTGGGATAATTAAACGTGACCTTACAGGGTCGCCAGTCCGTATCACTCCATATTTA CAGGATGTTGACGCCCTGGCGCAGGCAGGTGCCGATATTATCGCTTTTGATGCCTCATTC CGCTCTCGCCCGGTTGATATTGATAGTTTACTGACACGTATTCGCCTGCATGGATTACTG GCGATGGCAGACTGTTCAACCGTGAATGAAGGCATAAGTTGCCATCAGAAAGGAATCGAA TTCATTGGTACAACACTGTCTGGCTATACCGGTCCCATCACGCCGGTTGAGCCAGATTTG GCAATGGTGACACAACTGAGTCATGCAGGTTGTCGTGTTATTGCCGAGGGGCGCTATAAC ACGCCTGCACTGGCGGCCAATGCTATTGAGCATGGTGCCTGGGCAGTTACCGTTGGTTCC GCTATCACCCGTATCGAGCATATCTGTCAGTGGTTCAGTCACGCAGTAAAACGCTGAATG AAAAATTTTAAGAAAATGATGACGCTAATGGCGCTATGTTTATCAGTTGCTATCACCACA TCAGGATATGCAACCACGCTTCCTGATATACCAGAACCACTGAAAAATGGTACTGGCGCT ATTGATAATAATGGCGTGATTTATGTCGGCTTAGGTACCGCAGGGACATCCTGGTATAAA ATTGATCTTAAAAAGCAACATAAAGACTGGGAGCGTATAAAGTCGTTTCCTGGTGGAGCT CGTGAGCAATCCGTGTCGGTATTTTTAAATGATAAGCTGTATGTTTTTGGTGGCGTAGGG AAAAAAAACAGTGAATCACCGTTGCAGGTTTATAGCGATGTGTACAAATACTCACCGGTG AAAAATACATGGCAAAAAGTTGATACTATATCTCCAGTTGGATTAACAGGGCATACGGGA GTAAAATTAAACGAAACGATGGTACTTATTACCGGAGGGGTTAATGAGCATATCTTTGAT AAGTATTTTATTGATATAGCGGCTGCGGATGAAAGTGAAAAAAATAAAGTCATCTATAAT TATTTTAATAAACCTGCCAAAGATTATTTTTTTAATAAAATCGTATTTATCTACAATGCT AAAGAGAACACATGGAAGAATGCCGGTGAGCTGCCAGGCGCGGGGACGGCAGGATCGTCA TCGGTAATGGAAAATAATTTCTTGATGCTGATTAATGGTGAGCTCAAACCGGGTTTACGT ACCGATGTGATTTACCGCGCCATGTGGGATAACGATAAGCTAACATGGTTGAAGAACAGC CAGTTACCGCCATCGCCTGGAGAACAACAGCAGGAAGGGTTGGCCGGAGCATTTTCGGGC TATAGCCACGGTGTCCTGCTTGTCGGTGGTGGCGCGAATTTTCCGGGAGCAAAACAAAAT TATACTAATGGAAAGTTTTATTCCCACGAAGGGATAAATAAAAAATGGCGAGATGAAGTC TATGGTTTGATTAATGGCCATTGGCAATATATGGGTAAAATGAAACAACCTCTCGGCTAT GGTGTATCAGTAAGTTATGGTGATGAAGTTTTCCTTATTGGTGGTGAAAATGCTAAAGGG AAACCTGTTTCGTCTGTAACCTCCTTTACCATGCGTGATGGTAATTTATTAATAAAATAA GTGATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACACGTCCACAAAAAAATGCTTTA TTTTCAGCATGGCTGGGTTACGTTTTTGATGGCTTCGACTTTATGCTGATTTTCTACATT ATGTATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTTGCCACA GCGGCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGACAAATTT GGCCGTAAGCCGTTAATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGGTTAAGT GGCCTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGTTTTATTGTCGGTATGGGGATG GCGGGGAAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCATTTAAAA TCTAAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCAGCCTAT TTTATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGTTTGCTA CCCGTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGGGAAGAA GCCAAACTCAGTGGTCTCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCTTTGTCA ATGAAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATTGTTCTG TTCTCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTGGCGGGA GAGGGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGCACTGTA TTGGGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACGTTCAGC ATTGGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAAGATAAT TATTTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTTGGCGGG CTGGTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGTACCGGG CTTATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACCTGGCTT GGAATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACCGCAACA ATTCTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAAAGGTTT CAGTCAACAAAAGAATTTTAAATGAAAAAGTATCTTGCTTTCGCCGTTACGCTGCTGGGT ATGGGTAAAGTCATCGCCTGTACTACCCTTTTGGTAGGCAATCAGGCTTCGGCTGACGGC TCCTTTATTATCGCGCGCAACGAGGATGGCTCGGCAAATAACGCCAAGCATAAGGTTATT CATCCCGTCGCGTTTCATCAACAAGGCGAGTATAAAGCACATCGCAACAATTTTAGCTGG CCGCTTCCGGAGACAGCGATGCGCTATACGGCGATTCATGACTTTGATACTAACGATAAC GCCATGGGTGAAGCCGGTTTCAATTCGGCGGGCGTCGGAATGAGCGCAACGGAAACCATT TACAACGGCAGAGCGGCGCTGGCTGCCGATCCTTACGTGACAAAAACGGGAATCACGGAA GACGCCATTGAGTCCGTGATCCTGCCAGTGGCGCAATCGGCGCGTCAGGGCGCCAAATTA CTGGGAGATATTATTGAACAAAAAGGCGCGGGCGAAGGTTTCGGCGTCGCGTTTATTGAT AGCAAAGAGATATGGTATCTGGAGACGGGAAGCGGACATCAATGGCTGGCAGTACGACTT CCGGCAGATAGCTATTTCGTTTCCGCCAATCAGGGACGTTTACGCCATTACGATCCGAAT GATAACGCGAATTATATGGCGTCACCAACGTTAGTAAGCTTTGCGAAAAAGCAGGGATTA TATGATCCGGCCCGCGGCGAATTCGACTTTCATCAAGCCTATTCGCAGGATAACAAAAAC GATACCACCTATAATTATCCGCGCGTCTGGACGCTACAACACCAGTTTAATCCGCATCTG GATACGGTCGTTAGCGAAGGGGAAACATTTTCTGTTTTTTTAACGCCAATAACGAAGATC AGCGTGGCGGCAGTAAAAAACGCGTTACGCAATCACTATCAGGGAACGTCGCACGACCCT TATGCCAGTCATAATCCACAAGAACCATGGCGACCTATATCCGTTTTTCGTACCCAGGAG TCACATATTTTACAGGTCAGACCGAAATTACCGCAGGCTATCGGCAACGTAGAATACATC GCCTATGGAATGCCATCTCTTAGCGTCTATCTCCCCTATTACCAGGGGATGCGTCATTAT CAACCCGGAGATGATAAAGGAACCGATCGGGCGAGCAACGACTCTACCTACTGGACATTC CGCACGCTGCAAACACTGGTTATGCAAGACTACAATACGTTTGCGCCAGATGTGCAACAT GCCTGGAAAACATTTGAACAGCAAACAGCTAAGCAACAGTATAAGATGGAGCAGAGCTAT CTGAGATTATATGCGTCGCATCCGAAAGAAGCACAACGCTTACTGCAAAATTTTGAAGAT AAAACGATGCAAAATGCGCAGACGCTCGCCCGTCGCCTGACCAATAATATTATTACGACA ATGACTTACCGCACAGATATGAAATATCACTTTTCAAGTACGCAGCCATAAATGGGAAGA CAAAAAGCAGTGATCAAAGCTCGTCGTGAAGCAAAGCGTGTGTTGAGACGAGATTCGCGT AGTCATAAGCAACGTGAAGAAGAATCGGTCACGTCACTGGTACAGATGGGCGGAGTAGAA GCCATTGGCATGGCGCGCGATAGTCGCGATACCTCTCCTGTTAAGGCGCGAAATGAAGCA CAGGCGCATTATCTGAACGCTATCGACAGTAAACAGCTTATTTTTGCGACCGGCGAAGCC GGCTGCGGAAAAACATGGATCAGTGCGGCAAAGGCGGCAGAAGCATTGATTCATAAGGAC GTCGAGAGGATCATTGTGACGCGTCCGGTATTGCAGGCTGATGAAGATCTTGGTTTTTTG CCCGGTGATATCGCTGAAAAATTCGCGCCTTATTTTCGTCCCGTCTACGATGTCCTGCTT AAACGGTTGGGCGCGTCCTTTATGCAATATTGTTTGCGCCCGGAAATCGGTAAGGTAGAA ATTGCCCCGTTCGCCTATATGCGTGGGCGTACTTTTGAAAATGCGGTCGTGATCCTCGAC GAGGCGCAAAATGTGACTGCGGCGCAAATGAAAATGTTTTTGACGCGATTAGGCGAAAAT GTCACGGTCATTGTCAATGGCGATATTACGCAATGCGACCTGCCGCGCGGTGTGCGTTCC GGGTTGAGTGATGCGTTGGAACGCTTTGAAGAAGATGAAATGGTGGGGATTGTGCATTTC AACAAAGACGACTGCGTGCGCTCGGCGCTTTGTCAGCGAACGCTCCACGCATACAGCTAA ATGGGAACCACCACGATGGGGGTTAAGCTGGACGACGCCACGCGCGAACGGATCAAAATG GCCGCGTCGCGTATCGATCGCACGCCGCACTGGTTAATAAAACAGGCAATCTTTAGCTAT CTGGACAAGCTGGAAAATAGCGATACGCTACCGGAGCTACCTGCGCTGTTTGCCGGCGCG GCAAATGAAAGCGAGGAGCCGGTCGCGCCGCAGGATGAGCCGCATCAGCCCTTTCTGGAG TTTGCCGAACAGATTCTTCCCCAATCCGTCTCTCGCGCCGCCATCACCGCCGCCTGGCGC CGCCCGGAAACCGATGCGGTGTCAATGCTAATGGAACAGGCGCGCCTGTCGCCGCCTGTC GCTGAGCAGGCGCATAAACTGGCGTATCAACTGGCGGAGAAATTGCGCAATCAAAAATCC GCCAGCGGTCGCGCGGGTATGGTGCAAGGCCTGTTGCAGGAGTTTTCCCTCTCTTCGCAA GAAGGCGTAGCGCTGATGTGTCTGGCGGAAGCGCTGCTGCGTATTCCCGACAAAGCTACG CGCGATGCGTTAATTCGCGACAAAATCAGTAATGGCAACTGGCAGTCGCATATTGGCCGT AGCCCGTCGCTGTTTGTAAACGCCGCCACCTGGGGGCTGCTCTTTACCGGCCGACTGGTC TCAACGCATAACGAAGCCAATCTTTCGCGCTCGCTGAACCGCATTATCGGCAAGAGCGGC GAACCGTTAATCCGCAAAGGCGTCGACATGGCGATGCGTTTAATGGGCGAGCAGTTCGTG ACTGGCGAAACCATTGCTCAGGCGCTGGCGAATGCCCGAAAACTGGAAGAGAAAGGGTTC CGCTATTCTTACGATATGCTGGGCGAAGCCGCGTTAACCGCCGCCGATGCGCAGGCCTAT ATGGTCTCTTACCAGCAAGCGATTCATGCCATCGGCAAAGCGTCTAACGGTCGCGGTATT TACGAAGGGCCAGGCATCTCGATTAAGCTGTCCGCCCTGCATCCACGCTATAGTCGCGCG CAATACGATCGGGTAATGGAGGAGCTTTATCCGCGCCTGAAATCCCTGACGCTGCTGGCG CGCCAGTATGATATCGGTCTCAATATCGACGCCGAAGAGGCGGATCGTCTGGAGATCTCG CTTGATCTGCTGGAAAAACTCTGCTTCGAACCCGAACTGGCGGGCTGGAACGGCATTGGC TTTGTGATTCAGGCTTACCAGAAACGCTGCCCGCTGGTCATTGATTATTTAGTCGATCTG GCCTCCCGTAGCCGCCGTCGGCTGATGATTCGTCTGGTGAAAGGCGCCTACTGGGATAGC GAGATCAAACGCGCGCAAATGGAAGGGCTGGAGGGCTATCCAGTTTATACCCGCAAAGTG TATACCGATGTCTCTTATCTGGCCTGCGCGAAAAAACTGCTCGCCGTCCCTAATCTGATC TACCCGCAGTTCGCGACCCATAACGCTCACACACTGGCGGCGATTTATCATCTGGCCGGG CAAAATTACTATCCGGGTCAGTACGAATTCCAGTGCCTGCACGGCATGGGAGAACCGCTG TATGAACAGGTCACCGGTAAAGTGGGGGACGGAAAACTTAACCGTCCCTGCCGTATTTAC GCGCCGGTGGGAACACACGAAACCCTGCTGGCCTATCTGGTACGACGCCTGCTGGAAAAC GGCGCCAACACCTCTTTTGTCAACCGCATCGCCGATGCCACCCTACCGCTCGATGAACTG GTGGCCGACCCGGTCGAGGCCGTGGAAAAACTGGCGCAGCAGGAAGGTCAGGCTGGCATA CCGCATCCAAAAATTCCGCTGCCGCGCGATCTGTACGGCGAAGGTCGGATAAACTCCGCC GGACTTGATTTAGCGAATGAACATCGCCTCGCCTCGCTTTCTTCTGCCCTGTTAAGCAAC GCCATGCAGAAATGGCAGGCCAAACCTGTGCTGGAACAACCGGTGGCCGACGGTGAGATG ACGCCGGTTATCAACCCGGCGGAACCGAAAGATATTGTTGGCTGGGGACGCGAAGCGACA GAAAGCGAGGTTGAACAGGCGTTGCAAAACGCGGTCAATCAGGCGCCGGTTTGGTTTGCG ACGCCGCCGCAAGAACGCGCCGCTATTTTGCAGCGGGCGGCGGTATTGATGGAAGACCAA ATGCAGCAGTTGATTGGCCTGTTGGTGCGTGAAGCGGGGAAAACGTTCAGCAACGCCATT GCCGAAGTGCGCGAAGCGGTAGACTTCCTCCATTATTATGCCGGTCAAGTGCGTGACGAT TTCGATAACGAAACGCATCGCCCGTTAGGGCCGGTGGTCTGTATCAGTCCGTGGAACTTT CCGCTGGCCATTTTCACTGGCCAAATCGCCGCCGCGCTGGCGGCAGGTAACAGCGTTCTG GCGAAACCGGCAGAGCAGACATCGCTGATTGCCGCCCAGGGCATTGCCATTTTGCTGGAA GCGGGCGTACCGCCGGGCGTCGTGCAACTGTTGCCGGGACGGGGAGAAACCGTCGGCGCC CAGCTTACCGCCGATGCGCGTGTACGCGGCGTGATGTTTACCGGTTCCACGGAGGTCGCG ACGTTGTTGCAGCGCAACATCGCCACGCGTCTTGACGCCCAGGGGCGCCCTATTCCGTTG ATTGCGGAAACCGGCGGTATGAACGCTATGATTGTCGACTCTTCCGCGCTCACCGAGCAG GTGGTCGTGGATGTGCTGGCTTCCGCCTTCGACAGCGCCGGACAACGCTGTTCCGCGCTC CGCGTGCTGTGTTTGCAGGACGATATCGCCGAACATACGCTGAAAATGTTACGCGGCGCG ATGGCGGAGTGTCGGATGGGGAATCCAGGCCGTCTGACGACCGATATCGGGCCGGTGATC GATAGCGAGGCCAAAGCCAACATTGAACGTCATATCCAGACGATGCGCGCCAAAGGCCGC CCGGTTTTCCAGGCCGCGCGTGAAAACAGCGATGACGCGCAGGAATGGCAGACCGGTACG TTTGTTATGCCCACGCTTATTGAGCTGGAAAACTTCGCAGAACTGGAAAAAGAGGTCTTC GGGCCCGTGCTGCACGTCGTGCGTTATAACCGTAACCAACTGGCGGAGCTTATCGAACAG ATTAACGCTTCCGGCTACGGGCTAACGCTGGGCGTACATACCCGTATTGATGAAACCATT GCGCAAGTCACCGGTTCCGCCCATGTCGGCAACCTGTACGTTAACCGTAATATGGTGGGC GCGGTCGTCGGCGTCCAGCCGTTTGGCGGCGAAGGCCTGTCCGGCACCGGGCCAAAAGCG GGAGGGCCGCTCTATCTCTACCGCCTGCTGGCACACCGCCCGCCCAATGCGCTCAATACG ACGCTGACTCGTCAGGATGCGCGTTACCCGGTGGATGCGCAGCTTAAAACCACGCTACTC GCGCCGTTGACCGCTCTGACGCAATGGGCGGCGGATCGCCCGGCGCTACAGACGCTCTGC CGACAATTCGCCGATCTGGCGCAGGCCGGCACGCAGCGCCTGCTACCGGGGCCGACCGGC GAGCGTAATACCTGGACGCTGTTGCCGCGTGAACGGGTGTTATGCCTGGCTGATGATGAA CAGGACGCGTTGACGCAGCTTGCCGCCGTTCTCGCCGTCGGCAGTCAGGCGCTATGGTCA GACGACGCCTTCCACCGCGATCTGGCGAAACGTCTCCCCGCCGCCGTCGCGGCGCGTGTC CAGTTTGCGAAAGCGGAAACGCTGATGGCGCAGCCGTTTGACGCGGTGATTTTCCACGGC GACTCCGACAAGCTGCGAACCGTGTGCGAAGCCGTCGCCGCCCGCGAAGGCGCGATAGTG TCGGTACAGGGGTTCGCCCGCGGCGAAAGCAATATGCTGCTGGAACGGCTCTATATTGAA CGTTCGCTGAGCGTAAACACTGCCGCCGCTGGCGGTAATGCCAGCCTGATGACAATTGGC TAAATGGCTATTAGCACACCGATGTTGGTGACATTCTGTGTCTATATTTTTGGCATGATA TTGATTGGGTTTATCGCCTGGCGCTCAACCAAAAACTTTGATGACTATATTCTTGGCGGT CGCAGCCTGGGGCCGTTTGTTACGGCTTTATCAGCCGGCGCGTCGGATATGAGCGGCTGG CTGTTAATGGGGCTGCCTGGCGCTATCTTTCTGTCGGGGATCTCTGAAAGCTGGATCGCC ATTGGCCTGACGTTAGGCGCATGGATTAACTGGAAGCTGGTGGCCGGGCGCCTGCGCGTG CATACCGAATTTAACAATAACGCGCTCACGCTGCCGGACTATTTTACCGGTCGGTTTGAG GATAAGAGCCGAGTCCTGCGTATTATTTCCGCGCTGGTCATTCTGCTGTTTTTCACTATC TATTGCGCATCAGGTATTGTCGCTGGGGCACGACTGTTCGAAAGCACCTTCGGTATGAGC TATGAAACCGCACTGTGGGCGGGGGCCGCGGCAACCATTATTTATACCTTTATCGGCGGG TTTCTTGCCGTTAGCTGGACGGATACCGTTCAGGCCAGCCTGATGATTTTTGCGTTAATC CTGACGCCGGTGATGGTTATTGTCGGCGTAGGCGGTTTTAGCGAGTCGCTGGAAGTGATC AAGCAAAAGAGCATCGAGAATGTCGACATGCTCAAGGGGCTGAATTTTGTCGCTATTATT TCTCTGATGGGCTGGGGGCTGGGTTACTTCGGTCAGCCGCATATCCTGGCGCGCTTTATG GCGGCGGATTCCCATCACAGTATTGTTCATGCGCGTCGTATCAGTATGACCTGGATGATT CTGTGTCTGGCGGGCGCGGTGGCGGTGGGCTTCTTTGGCATTGCGTACTTTAACAATAAC CCCGCGCTGGCCGGGGCGGTGAACCAAAACTCAGAACGCGTATTTATTGAACTGGCGCAG ATCCTGTTTAACCCGTGGATTGCCGGTGTTCTGCTGTCTGCTATCCTGGCGGCGGTGATG TCGACGTTGAGCTGTCAGTTGCTGGTATGCTCCAGCGCGATTACGGAAGATTTATATAAG GCTTTTCTGCGTAAAAGCGCCAGCCAGCAAGAGCTGGTATGGGTAGGGCGAGTGATGGTG CTGGTGGTAGCGCTGATCGCCATTGCGCTGGCGGCGAATCCTGATAACCGTGTGCTGGGG CTGGTGAGCTACGCCTGGGCTGGATTCGGCGCGGCATTTGGACCTGTTGTCCTGTTTTCT GTGATGTGGTCGCGTATGACACGTAACGGCGCGCTGGCGGGAATGATTATTGGCGCGGTG ACGGTTATCGTCTGGAAACAATATGGCTGGCTGGATCTGTATGAGATTATCCCTGGCTTC ATTTTCGGCAGCCTGGGGATCGTAATCTTTAGCCTGCTTGGCAAAGCGCCGACAGCAACG ATGCAGGAACGCTTTGCAAAAGCGGACGCGCATTATCATTCCGCGCCGCCGTCGAAGCTA CAGGCGGAATAAATGGCGGGTAAACTGCGGCGTTGGCTGCGTGAAGCCGCGGTTTTTCTG GCGCTCCTCATCGCGATAATGGTGGTCATGGACGTCTGGCGCGCGCCGCAGGCGCCTCCG GCGTTTGCCGCGACACCATTACATACGCTGACGGGAGAGTCGACAACTCTGGCGACCTTG AGCGAGGAACGCCCCGTACTGCTCTATTTTTGGGCCAGCTGGTGCGGGGTATGCCGCTTT ACCACGCCTGCGGTCGCTCACCTGGCGGCGGAAGGGGAAAACGTCATGACCGTTGCGCTC CGCTCCGGCGGTGATGCTGAGGTTGCCCGCTGGCTGGCGCGCAAGGGCGTTGACTTCCCG GTCGTCAATGATGCTAACGGCGCCTTATCCGCTGGCTGGGAAATCAGCGTGACGCCAACG CTGGTGGTGGTTTCACAAGGTCGGGTTGTGTTCACCACCAGCGGCTGGACCAGCTATTGG GGCATGAAGCTTCGGCTGTGGTGGGCAAAAACGTTCTGAATGATGAAAAAAAGCGTCGCT ATGCTGGCGGTTTGTATGCTGGCGCAAAGCCACCTTGCCATTGCTGCCGGTGCTCCTGCG CCTCAAGAGATCAACATTGTTTTACTGGGCACCAAAGGCGGGCCTTCTTTGCTCAATACA GCCAGACTACCGCAAGCGACGGCGCTCACTATCGGCGATAAGATATGGCTGATAGATGCC GGCTACGGCGCCAGTCTGCAACTGGTGAAAAATGGCATTCCACTGCGCAACATCAATACT ATTTTGCTCACCCATCTGCACAGCGACCACATACTGGATTATCCTTCCTTGCTGATGAAT GCCTGGGCAAGTGGCCTGAAAGACCATACCATACAGGTTTATGGCCCGCCGGGAACCCAG GCGATGACGAAGGCTAGCTGGAAGGTCTTTGACAGGGATATCACGTTACGCATGGAAGAA GAGGGGAAACCCGATCCGCGCAACCTGGTTAAGGCGACCGATATCGGCCAGGGCGTCATC TATAAAGATGAACTGGTCACAATAAGCGCGCTGAAAGTGCCTCATTCCCCTTTCCCGGAC GGTGAAGCGTTTGCTTACCGTTTTGATACTCAGGGTAAGCGAATCGTCTTCTCTGGCGAT ACGTCCTGGTTTCCTCCGCTTGCAACGTTTGCCCAGGGGGCGGATATCCTGGTACATGAG GCGGTACATGTCCCTTCGGTAGCAAAACTGGCTAATAGTATTGGCAACGGAAAAACGCTG GCTGAAGCGATTGCGTCGCATCACACCACGATTGAAGATGTCGGTAAGATTGCTCGCGAG GCCCACGTGAAAAAACTGGTGTTAAGTCATCTGGTGCCTGCGACGGTTGCGGATGACGTC TGGCAACAGGAAGCCATGAAAAATTACCCGGGCCCTGTCATTGTCGGTCATGACAATATG ACGATAAGCGTACCGTAAATGTCGCAACGCACAGAGAAAAAAATCGGGAAACGTTCGCAG GCCACCGGTGCAAAACGGCAGCTTATCTTAACCGCCGCGCTTGCCGTTTTTTCCCAGTAT GGCATTCATGGCGCGCGTCTTGAACAGGTCGCCGAGCGGGCAGGCGTCTCCAAAACCAAT CTGCTTTATTATTATCCCTCGAAAGAGGCGCTGTATGTCGCGGTAATGCGACAGATTCTG GATGTCTGGTTGGCGCCGCTCAAGGCGTTTCGCGCAGAATTTTCCCCTCTGGAGGCCATC AAAGAGTATATCCGTCTCAAGCTGGAGGTTTCGCGTGATTATCCGCAGGCGTCGCGGCTC TTCTGCATGGAGATGCTGGCGGGCGCGCCGCTCTTAATGGATGAACTGACCGGCGATCTA AAAGCGTTGATAGATGAAAAATCCGCGCTGATTGCCGGATGGGTGCACAGCGGGAAACTC GCGCCCGTTTCTCCGCATCATTTGATCTTCATGATTTGGGCCGCCACGCAACATTACGCC GATTTCGCCCCTCAGGTTGAAGCGGTAACCGGCGCGACGCTTCGCGATGAAGCCTTTTTC AACCAAACGGTCGAAAGCGTTCAGCGCATTATTATTGAAGGGATTCGCGTGCGTTAAATG GCGAAACAACAACGGATGGGCTGGTGGTTTCTTTGCCTTGCATGTGTCGTGGTAATGGTT TGTACCGCGCAACGCATGGCGGGCCTGCACGCCTTGCAGATGCAGGCGACGGCCTCTGCT GCGGTGGTCAGCGCTCCCTCCTCGACAGATGACGGCTCGCCGGTCACTCCCTGCGAATTA AGCGCCAAGTCGCTGCTGGCGGCGCCTCCAGTACTCTTTGAAGGTGCTATCCTTGCGCTT TATCTACTGCTTTCCTTACTGGCGCCTGTCCGGGTCATGCGCCTGCCGTTTTCGCCTCCA CGGGCTATTTCGCCGCCCACATTACGGGTACATCTACGATTTTGTGTCTTCCGTGAATGA ATGATGATTTTATTCAGGCGGATACTGTTCTGCCTGTTATGGCTTTGGCTGCCCGTCTCC TGGGCGGCGGAAAGCGGCTGGCTGCGTTCGCCCGATAACGACCATGCCAGCATACGGCTA CGTGCCGATACGTCCGCTAACAGTGAGACCCGGCTGTTGCTGGATGTCAAACTGGAAAAC GGCTGGAAAACCTACTGGCGCGCGCCGGGGGAAGGGGGCGTGGCACCCTCTATCGCCTGG AAAGGCGACATGCCTGAGGTAAGCTGGTTCTGGCCAACCCCCTCGCGCTTTGATGTGGCG AATATCACCACCCAGGGATATCACGACGAGGTGACCTTTCCGATGATCGTGCGCGGTACG CCGCCGGCGACCTTGCGCGGTGTGTTGACGTTATCAACCTGCAGCAATGTTTGTCTGTTG ACCGATTACCCCTTTTCCGTGACGCCCACTGTGCAGAATGCCGATTTTGCCCATGACTAT GCGCGGGCGATGGGTAAAGTTCCGCTCCGCAGTGGGCTAACGGACTCGCTTGACGTTGGC TATCGCCCGGGAGAACTGGTGGTCACTGCTACGCGAGCGGCGGGCTGGTCATCGCCCGGG CTCTATCTTGACACCATAGATGACGTCGATTTTGCGAAGCCTCGCCTGCGCGTAGAGGGC GACAGGTTACAGGCGACGGTGCCGGTGACGGACAGTTGGGGCGAAAAGGCGCCCGATTTG CGCGACAAATCGCTGACCCTCGTGTTAGCCGATGGCGCTATCGCCCAGGAGAGCACGCAA ACCATTGGCGCTGCGCCAGCGCAAACGCCGGACAATGCGGCGCTACCTTTCTGGCAAGTT GTAATGATGGCGCTAATCGGCGGACTGATTCTTAATTTAATGCCCTGCGTACTGCCTGTT CTGGGCATGAAACTTGGCTCTATTTTATTGGTAGAGGAAAAAAGCCGCTCTCACATCAGG CGACAATTTTTGGCTTCGGTCGCCGGTATCATTGCGTCATTTATGGCGCTGGCGGCGTTT ATGACCCTCCTTCGCCTGTCAAACCATGCGCTGGCCTGGGGAGTCCAGTTCCAGAATGCA TGGTTTATTGGTTTTATGGCGCTGGTGATGTTGTTGTTTAGCGCCAGCCTGTTCGGGCTT TTTGAGTTCAGGCTTCCCTCATCTATGACCACGAAACTGGCCACTTACGGCGGTAACGGT ATGTCGGGACATTTCTGGCAGGGGGCGTTCGCCACGCTGCTGGCGACGCCTTGTAGCGCG CCGTTTCTGGGCACGGCGGTCGCGGTGGCGCTCACGGCGTCGCTGCCGACGCTGTGGGGG CTGTTCCTTGCGCTTGGCCTGGGAATGAGCGCGCCGTGGCTACTGGTCGCGATACGACCA GGGCTTGCGCTACGTTTACCGCGCCCCGGGCGTTGGATGAATGTCCTGCGCAGGATCCTC GGTCTGATGATGCTGGGGTCGGCTATCTGGCTGGCGACGTTACTCCTGCCGCATTTCGGC TTCACTGCGTCAAAGAGCGCGCAAGACACGGTTCAGTGGCAACCGTTGAGTGAACAGGCA ATCCAGTCGGCGCTGGCGCAGCATAAGCGGGTATTTGTCGATGTCACTGCGGACTGGTGT ATTACCTGTAAAGTGAATAAATACAACGTCCTGCAAAAAGAGGATGTGCAGGCCGCCTTG CAACAGCCGGATGTTGTGGCGCTGCGGGGAGACTGGACGCTGCCGTCCGATGCCATTACA GATTTTCTGAAAACGCGCGGCCAGGTCGCCGTGCCGTTTAATCAGGTATATGGCCCCGGT TTGCCGGAAGGGGAGGCACTGCCCACTTTGCTGACCCGCGATGCGGTATTACAAACGTTG AAAAAAGCGAAAGGAATAACCCAATGAATGAAATACATGATTGTTTTACTGCTGGCGCTG TTTTCGACGCTGAGCATCGCGCAAGAAACCGCTCCTTTTACGCCGGATCAGGAAAAGCAG ATTAAAAATCTGATCCATGCGGCGTTGTTTAACGATCCTGCCAGCCCGCGGATAGGCGCT AAACACCCTAAGCTGACGCTGGTGAACTTTACGGATTACAACTGCCCGTACTGCAAACAG CTCGATCCGATGCTGGAAAAGATTGTGCAGAAATATCCTGACGTTGCGGTCATTATTAAA CCGCTGCCATTCAAAGGAGAGAGTTCCATACTGGCGGCGCGTATTGCGCTGACCACCTGG CGCGATCATCCGCAACAGTTCCTCGCGCTACATGAAAAACTTATGCAAAAGCGCGGTTAC CATACGGATGACAGTATTAAACAGGCCCAGCAGAAAGCAGGGGCGACGCCAGTGACGCTG GATGAAAAAAGCATGGAAACGATACGCACTAATTTGCAGTTGGCAAGACTGGTCGACGTG CAAGGAACGCCAGCGACGATCATTGGCGACGAGCTGATTCCGGGCGCAGTGCCCTGGGAT ACGCTGGAAGCGGTGGTGAAAGAAAAACTGGCGGCTGCCAATGGCGGGTAAATGATTGCA CATTCTTTCGGCATCGTTAATTATTTTGTATTATTTGGCTACCTCCTGGCCATGATGGTA GTCGGTGTCTATTTTTCCAGACGGCAAAAAACAGCAGACGATTATTTTCGCGGTGGTGGC CGGGTTCCTGGTTGGGCGGCTGGGGTCAGTGTATTTGCTACTACGTTAAGCTCAATTGCA TTTATGTCAATTCCTGCCAAAGCGTTTACTTCCGACTGGACGTTTATCATTGGTCAGGAT CTGGCTATCGCAATTTTACCGCTGGTTTTTTATTTCTATATTCCGTTTTTTCGGAAAGTG AAAGTCACATCAGCCTATGAATATCTCGAAGCACGGTTCGATGTGCGCTGCCGTCTGGTC GCCAGCATGTCATTTATGTTGTTTCATATTGGACGTATCGCCATTATCACTTTCCTCGCC GTGCTGGCCTTGCGCCCCTTCATCGCTATAGACCCGGTGATTTTGGTACTGTTGATTGGT GTGATGTGTATCATTTATACCTGGATGGGGGGGAATTGAATGGAAAGTCTATTAAATCGT TTATATGACGCGTTAGGCCTGGATGCGCCAGAAGTTGAGCCACTGCTTATCATTGATGAT GGGATACAGGTTTATTTTAATGAATCCGATCATATACTGGAAATGTGCTGTCCCTTTATG CCACTGCCTGACGACACTCTGACTTTGCAGCATTTTTTACGTCTTAACTACGCCAGCGCC GTCACTATCGGCGCTGATGCAGACAATACTGCTTTAGTGGCGCTTTATCGCTTGCCGCAA ACCAGTACCGAAGAAGAGGCGCTCACTGGTTTTGTATTATTCATTTCAAACGTGAAGCAA TTGAAAGAGCATTATGCATAAATGAAATACGACCTTATTATTATCGGCAGCGGTTCGGTT GGCGCCGCCGCTGGTTATTACGCCACCCGCGCCGGGCTAAAGGTCCTGATGACCGATGCG CATATGCCGCCTTATCAACAGGGCAGCCACCACGGCGATACCCGTCTTATCCGCCACGCT TATGGTGAAGGCGAAAAATATGTCCCGCTGGTGCTTCGCGCCCAGACGCTTTGGGATGAG CTCTCCACACACAATGAAGAGCCTATTTTTGTCCGCTCCGGCGTCGTCAACCTCGGCCCG GCCGATTCCGCTTTCTTAGCCAACGTCGCACGAAGCGCGCAACAGTGGCAATTGAACGTC GAGCGCCTGGACGCGACGGCCCTCATGACGCGCTGGCCGGAAATTCGCGTGCCCGATAAT TATATCGGGCTGTTTGAAGCTGACTCCGGTTTCCTGCGCAGCGAATTAGCCATTACCACA TGGCTTCGTCTGGCCCGAGAGGCAGGCTGCGCACAGCTATTCAACAGCCCGGTAAGCCAT ATTCACCATGATGATAACGGTGTGACGATAGAGACGAGTGAAGGCTGCTACCACGCCAGC AAAGCGCTGATTAGCGCGGGCACCTGGGTCAAAACGCTGGTACCGGAGCTGCCCGTTCAG CCCGTACGTAAAGTTTTTGCCTGGTTTAAGGCGGATGGACGTTACAGCACTAAAAACCGC TTTCCGGCCTTTACCGGCGAAATGCCCAACGGCGATCACTATTACGGTTTCCCGGCGGAG AACGACGAGTTAAAAATCGGCAAACACAATGGCGGGCAGCGAATACAGGCACCGGAAGAG CGCAAGCCCTTTGCCGCCGTTGCCAGCGATGGCGCGGAAGCATTTCCTTTCCTGCGTAAC GTACTGCCGGGTATCGGCGGTTGTTTACATGGGGCGGCATGTACCTATGATAATTCGCCG GACGAGGATTTTATTATCGATACGCTGCCTGGCCATGAGAATACGCTTGTCATCACTGGA CTCAGCGGACATGGTTTTAAATTCGCCCCGGTGTTAGGAGAAATCGCTGCGGATTTTGCG TTGGGAAAAACGCCCTCCTTTGATCTGACGCCGTTCCGGCTTTCCCGTTTTAGCCAATAA ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGATAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACA TCTTGAATGAAACGATATATACTGGCTACCGCGATAGCGTCTCTTGTTGCAGCCCCGGCA ATGGCGCTGGCCGCTGGCAGCAATATTCTCAGCGTACATATTCTCGATCAGCAAACAGGC AAACCAGCGCCCGGCGTGGAGGTGGTACTGGAGCAGAAAAAGGATAACGGATGGACGCAA TTAAACACCGGGCATACCGACCAGGATGGACGAATTAAAGCACTGTGGCCCGAAAAAGCT GCCGCGCCGGGGGATTATCGCGTTATTTTTAAAACCGGCCAGTATTTTGAAAGTAAAAAA CTGGACACGTTTTTCCCGGAGATTCCCGTCGAGTTTCATATCAGCAAAACGAATGAGCAC TATCATGTGCCGCTGTTATTAAGTCAGTATGGTTATTCAACCTATCGCGGGAGCTAAATG GCAAAGATTCTGGTGCTCTATTATTCCATGTACGGACACATTGAAACCATGGCGCACGCG GTGGCGGAAGGGGCAAAGAAAGTCGACGGCGCAGAGGTCATTATAAAGCGTGTGCCAGAA ACAATGCCGCCTGAAATCTTCGCAAAAGCTGGCGGTAAAACGCAAAACGCACCGGTTGCC ACCCCACAGGAGCTGGCGGATTACGATGCCATTATTTTTGGTACGCCAACCCGGTTTGGC AATATGTCAGGCCAGATGCGTACCTTCCTGGACCAAACCGGCGGACTGTGGGCATCCGGC GCGCTATACGGCAAGCTCGGCGGCGTGTTCAGTTCTACCGGAACGGGCGGCGGCCAGGAG CAGACCATCACCTCGACCTGGACTACGCTTGCCCATCATGGGATGGTGATTGTCCCGATA GGCTATTCCGCACAGGAACTGTTTGACGTCTCCCAGGTTCGCGGCGGTACGCCTTACGGC GCAACGACTATCGCTGGAGGCGACGGTTCACGTCAACCAAGCCAGGAGGAACTCTCTATC GCTCGCTATCAGGGGGAATACGTCGCCGGTCTGGCAGTCAAACTCAACGGCTAAATGGAG CCTCAACCCCCACGTCTGAAACCCGGAAAAATCCTTGACACTCTGGGTGCTATGCAAAAA AGCCTGACACGTGCCTCGCAGCGTATTGCGCAATATATTTTAGCCTTCCCCAGACAGGTG ACACAGTCATCTATTGCGGATTTGTCGCGCGACACACAGGCCGGAGAAGCCACGGTTATT CGCTTTTGTCGCACCCTGGGCTATAAAGGTTTTCAGGATTTTAAAATGGACCTGGCCATT GAACTTGCCACTACCGAGTCTGATGACAGTAGTCCTCTACTGGATGCCGAAGTTAGCGAA TCCGACGATGCCCACGCGATTGGTTTAAAATTGCAGAACACCATTAGTAATGTATTATCT GAAACGCTAAATCTGCTGGATATGCAACAGGTTCTCGGTGTCGTGGACGCCCTACGTCAC TGTCACTCAGTTTATATGTTTGGTGTGGGCTCATCGGGGATCACGGCGCTGGATATGAAA CACAAGCTAATGCGTATGGGTTTACGGGGCGATGCGGTAAGCAATAACCATTTTATGTAC ATGCAGGCTACGCTATTGAAAGCAGGCGATGTCGCGATGGGTGTCAGTCACTCGGGCACA TCGCCAGAAACAGTGCATTCACTCCGATTGGCCCGACAGGCTGGCGCCACCACAGTCGCC ATTACCCATAATCTGGGTTCTCCATTATGTGAAGAGGCCGATTTTTGCCTGATCAATGGT AATCGGCAAGGAATGTTGCAGGGTGACTCGATCGGTACGAAAGCCGCGCAGCTTTTCGTC TTTGACCTGCTCTATACCCTTCTTGTACAGTCCTCGCCGGAACAGGCCCGAGAAAGCAAA TTACGGACAATGAATGCCCTGGACATGACAAAATAAATGAAGAAACTGCCCGGCTTTACG CAAGATTACTTACTCAGCAAGGCGACGACCCTGCCTGATAAAACACGCCTGGAGCGTGCC GTTGAACCGCTATGCGCGCGCCATCCCGGAGAGTGCGGCATTCTTGCGCTGGATAACAGT CTGGACGCTTTTGCCGCCCGCTACCGCCTGACCGAAATGGCGGCGCGGACGCTGGATGTG CAGTATTATATTTGGGAAGACGATATGTCCGGGCGGCTGCTCTTTTCGGTTCTGCTGTCG GCGGCGAAGCGCGGCGTTCATGTTCGTCTGCTGCTGGATGATAACAATACGCCTGGTCTG GATGATACGTTGCGCTTGCTGGATAGCCATCCTAATATCGAAGTTCGTCTGTTTAATCCT TTCTCTTTTCGTACGCTACGCGCGCTGGGATATTTGACGGATTTTGCGCGGCTGAATCGG CGGATGCACAATAAAAGTTACACTGCCGACGGCGTAGTGACGCTGGTCGGTGGGCGCAAC ATCGGCGATGCCTATTTCGGCGCTGGCGAGGAGCCGCTATTTTCCGATCTGGACGTGATG GCCATTGGCCCGGTGGTCAATGATGTCGCCAATGATTTTGAACGTTACTGGCGCTGTAGT TCAGTGTCGACATTGCAGCAAGTATTATCCCTTTCTGAGCAGGAACTGACGCAGCGTATC GAACTTCCCGAATCCTGGTATAACGATGAGATCACCCGCCGTTATCTGCATAAGCTGGAA ACCAGCCAGTTTATGGCGGATCTCGATCGCGGAACGTTGCCGCTGATTTGGGCAAAAACA CGCTTGCTTAGCGATGACCCTTCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTTCTT CCGCAGCGATTATTTGACGTGATGGGGTCGCCGACGGAGCGTATCGACATTATTTCCGCT TACTTTGTCCCTACGCGCGCAGGCGTGGCGCAGTTGCTTAATCTGGTCAGGAAAGGTGTG AAGATCGCCATCTTAACTAACTCTCTGGCGGCCAACGATGTGGCGGTCGTTCACGCAGGG TACGCGCGCTGGCGCAAGAAATTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAACCG ACCCGCGAACATGAAACCGCCGTACATGATCGCGGACTCACCGGGAACTCAGGTTCCAGC TTACATGCTAAAACGTTCAGTATTGATGGTAGTAAGGTGTTTATCGGGTCGCTTAATTTT GATCCCCGTTCAACGCTTTTAAATACCGAAATGGGCTTTGTCATTGAAAGTGAAACGCTG GCGACGCTTATTCATAAGCGTTTTACGCAGAGCCAACGCGATGCGGCCTGGCAACTGCGG CTGGATCGCTGGGGACGAATTAACTGGATCGATCGTCAGCAAGAAGAGGAAAAGGTGTTA AAGAAAGAACCCGCTACGCGTTTCTGGCAGCGAGTTCTGGTACGGTTGGCGGCAATTTTA CCTGTGGAATGGTTGCTGTGAATGCCAACTCAAGAAGCAAAAGCGCACCGCGTCGGCGAA TGGGCAAGCCTGCGTAATACGTCGCCGGAAATTGCCGAAGCCATTTTTGAAGTCGCTCAC TATGACGAGAAACTGGCAGAAAAAATATGGGAAGAAGGTAGCGATGAGGTGCTGATCAAA GCCTTTGAGAAAACGGACAAAGACTCGCTCTTCTGGGGCGAACAAGTCATCGAACGTAAG AACGTATAAATGTATCCCGTTGACCTGCATATGCATACCGTCGCGAGCACTCATGCCTAC AGTACTCTGAGCGATTATATCGCGGAAGCCAAACGCAAAGGCATGAAACTTTTTGCGATT ACCGATCATGGTCCGGACATGGAAGATGCGCCGCATCACTGGCAGTTTATTAACATGCGC ATCTGGCCGCGTCTGGTTGACGGCGTGGGGATACTGCGTGGCATGGAGGCGAATATCAAG AATATTAACGGTGAAATTGATTGTTCCGGAAAGATGTTCGACTCGCTGGATCTGATTATC GCAGGCTTTCATGAGCCCGTTTTTGCGCCGCATGATAAAGAAACGAATACTCAGGCGATG ATCGCGACCATCGCCAGCGGCAAGGTGCATATAATTAGTCACCCGGGAAATCCAAAGTAT CCAGTGGAGGTTAAAGCCATCGCGCAGGCGGCGGCGAAACACCAGGTAGCGCTGGAAATC AACAACTCTTCTTTTCTGCATTCGCGTAAAGGAAGCGAAGATAAGTGCCGCGCGGTCGCT GCCGCCGTACGCGATGCGGGAGGCTGGGTAGCGTTAGGCTCTGAGTCCCATACGGCCTTT ACGCTTGGCGATTTCACCGAATGCCGGAAAATTCTGGATGCGGTGAATTTTCCGGAAGAT CGAATCCTGAACGTCTCTCCGCAGCGCTTACTGGCCTTTCTCGAGTCACGCGGTATGGCG CCTGTACCGGAATTTGCCGAACTTTAAATGAATGAGTTTTCAATCCTGTGCCGTGTGCTG GGATCGTTGTTTTACCGCCAAGCGCAAGATCCTTTACTGGTTCCGCTGTTTACGTTAATC CGTGAAGGTAAACTGGCGGCAGACTGGCCGCTGGAGCAGGATGACATGCTGGCGCGTTTA CAGAAAAGCTGCGATATCACGGAGATTTCCACTGATTACAATGCGTTATTTGTTGGGGAA GAGTGCGCGGTAGCGCCATACGGCAGTGCGTGGGTCGAAGGCGCGGAAGAGTCTGAGGTG CGCGCTTTTTTAACGTCGCGAGGGATGCCGCTGGCCGATACGCCTGCCGATCACATTGGC ACTTTATTGCTCGCGGCCTCCGGGCTGGAAGATCAGTCTGCCGAAGATGAAAGTGAAGCG CTGGAAACCTTATTTGCCGATGATCTGCTTCCCTGGTGCAATACCTTCCTCGGTAAAGTT GAAGCCCATGCCGTTACGCCAGTCTGGCGCACTCTGGCGCCGCTAACGCGTGATGCGATA GGGGCCATGTGGGATGAACTTGAGGAAGAAGATGAAGAATAAATGATGCGCGCGATGAAC ATACTTCTTTCTATTGCTATCACTACGGGCATCCTTTCTGGAATATGGGGATGGGTGGCC GTCTCCCTGGGGTTACTAAGCTGGGCCGGTTTTTTAGGCTGTACGGCTTATTTGGCCTGT CCGCAGGGCGGCTTTAAGGGATTGTTGATTTCCGCCTGTACGCTGTTAAGCGGGATGGTG TGGGCGCTGGTCATTATTCACGGTAGCGCGTTGGCGCCGCATCTGGAAATTGTGAGTTAC GTGTTGACGGGGATCGTGGCATTCCTGATGTGTATCCAGGCAAAGCAGCTATTGCTTTCT TTTGTTCCGGGAACATTTATCGGCGCCTGCGCGACATTTGCAGGGCAGGGTGAGTGGCGG TTGGTATTACCGTCGCTGGCGCTGGGGCTAATCTTTGGCTATGCCATGAAAAAGAGTGGG CTATGGCTGGCATCACGCCGCGAGCAACATTCAGCGAATACGGCGGTCACAAAGTAAATG AAAAAAAACCTGCTGGGATTCACCCTCGCATCCTTGTTATTCACGACCGGTTCCGCCGTG GCGGCGGAGTATAAAATTGATAAAGAAGGCCAACATGCGTTCGTCAATTTCCGCATCCAG CATCTGGGCTACAGCTGGCTATACGGCACCTTTAAAGATTTCGACGGCACGTTCACTTTT GACGAAAAAAATCCGTCAGCAGACAAAGTGAATGTGACCATTAACACCAATAGCGTCGAC ACTAACCATGCCGAACGTGACAAACACCTGCGTAGCGCGGAGTTTCTTAATGTTGCGAAA TTCCCGCAGGCAACCTTCACCTCTACCAGCGTGAAAAAAGAGGGCGATGAACTGGATATT ACCGGCAATCTGACGCTCAATGGCGTGACTAAACCGGTGACGCTGGAAGCGAAGCTGATG GGCCAGGGCGACGATCCGTGGGGCGGTAAGCGCGCGGGCTTTGAGGCCGAAGGAAAAATT AAGCTGAAAGATTTCAATATAACTACCGATCTCGGCCCAGCCTCACAAGAGGTGGAGCTT ATCATCTCAGTAGAAGGCGTTCAGCAGAAGTAAATGTTACTGATGATGGCGCTGATCGTG CGTATTATCTGGCGGCTTTATTCTCCGCCGCCCGTTGCGTTGACCAGCTATTCCCGTTTA ACGCGCATTGGCGCCGCCGCGGGTCATATCCTTCTGTATCTCCTGCTCTTTGCGATAATC ATTAGCGGCTACCTGATTTCCACCGCCGACGGTAAACCGATTAGCGTCTTTGGCTGGTTT GAGATTCCGGCCACGCTTACGGACGCGGGCGCGCAGGCTGACATCGCCGGAACACTGCAT CTGTGGTTTGCCTGGTCGCTGGTCATTATCTCGCTCTCGCATGGGGTTATGGCGCTAAAA CACCATTTCATCGATAAAGACGACACACTGAAACGTATGACAGGAATGTCGTCATCTGAC TATGGAGCTCAAAAATGAATGGTTAAGTTATCAATGACGCTGCGCCTGACAATTTCTTTT ATCGCCATACTTATCCTCGCCTGTACCGGCATTAGCTGGACGCTCTATAACGCGCTGAGC AAAGAATTAACGTATCGGGATGATATGACGCTAATAAATCGGGCGGCGCAAATGCAGCAA CTGTTACTGGATGGCGCCAGGCCGGAAAATCTGCCGCTCTATTTCAATCGGATGGTGGAT ACGAAGCAGGATATCTTATTGATCCACTCAGCAACAGGCCATAATGTTGCGATTAATCAT AGCGGCATCCCCGACCAACGCTTTAACGAGATTCCGCTGGCTAAAAACATCACCCGCGAA ACCTTATTTCGCCAGGCGGTACAAGGCACGGAGCTGACCGCGGTACGAGTAAACGCCAGA AGCGGCGATAACCCGCTGACCCTTACTATTGCCAGGCTGGCGACGGAAAGGCGGCAAATG CTGGCGCAATATCGCCGCAACAGTTTGCTGATTAGCCTTATCGCGATCCTCGTCTGTTCG GCGCTCAGTCCATTAGTCATCAGAAACGGGCTGCGGGCCATTACGTCGCTCAGCCGACTC ACCGCGGCGACAGATAGCGGCACACTTCGCCAGCCGCTGGCGGAACAGGCGTTACCCGTC GAGCTCAGGCCGCTTGGGCAAGCGCTAAATACCATGCGCCAGAAGCTTTCCGACGATTTT GAACGCCTGAACCAATTTGCCGACGATCTGGCGCATGAGCTGCGCACGCCGGTTAATATT TTACTGGGGAAGAATCAGGTTATGCTGAGTCAGGAACGCAGCGCCGAAGAGTATCAACAA GCCCTTGTCGATAATATTGAAGAGCTGGAGGGACTGTCGCGACTGACAGAAAATATTCTC TTTCTGGCACGCGCGGAGCACCAGAATATAGCGGTAAAAAAACAGCCTGTTTCGCTCAAT GCGCTGGTCGAAAATATGCTGGATTATCTTAGCCCCCTTGCCGAAGAGAAGCACATCTGT TTTATAAATCAATGTCAGGGAACGGTATGGGCTGACGAAATATTATTACAAAGAGTGCTC TCAAACCTGCTGACGAATGCCATCCGTTATTCTGATGAAAACGCCGTGATACGTATTGAA AGCGCTTATGATGATAACGTTGCAGAAATTCGGGTCGCTAATCCGGGCAGCCCCACCGCC GATGCGGATAAGCTTTTCCGGCGTTTTTGGCGAGGAGATAATGCCCGCTACACTGCCGGT TTCGGCCTGGGGTTATCGTTAGTTAACGCGATTGCCCTATTGCACGGTGGCTCGGCATCT TACCGCTATGCCGATGAACATAATATCTTTTCGGTTCGTCTGCCTGATAGCGGTGATAGC TAAGTGATATGTCTGAAAGTCCAGGGCGGCATTGGTGAAATTTTTACGGTGACGCAGCAG GCGGATAAATTCTTGCCGGCTACGCAGTTCCACTGGAGCTGGACGGAAAGCACAGTACCT GTATTGATGATTGGGTTTCTGTTTGCCAATATTCAGCAATTTACTGCCAGTCAGGATGTG GTCCAACGCTATATGGTGACTGACTCCATAGAGGAAACGAAGAAAACATTACTTACAAAT GCCAAACTGGTTGCGGTGATCCCTGTTTTCTTTTTTGCTATCGGCTCGGCATTATTTGTC TACTATCAGCAACAGCCACAATTATTACCGGCGGGATTCAACACTGGCGGCATTTTGCCC TTATTCGTGGTCACGGAAATGCCAGTCGGCATTGCAGGGTTGATAATCTCCGCTATTTTC GCTGCCGCGCAGTCGAGCATCTCCAGCAGCTTAAACAGCATTTCCAGTTGTTTTAATTCC GATATCTATCAGCGGTTGAGTCATAAAAAAGGAACGCCAGAAAACCGTATGAAAATAGCT AAGTTAGTTATTCTGGTCGCGGGCCTGATAAGTAGCGCGGCCTCGGTATGGCTGGTCATG GCCGATGAATCAGAGATCTGGGATGCATTTAATAGTCTGATAGGTCTGATGGGAGGGCCA ATGACCGGTCTGTTGATGCTGGGCATTTTCTTTAAACGAGCAAATGCCGGGAGTGCGGTT TTAGGAATTATTATGAGCGTCATTACCGTGCTGGGCACACGCTATGCCACTGACCTTAAC TTCTTCTTTTATGGGGTCATTGGCTCGCTAAGCGTGGTGATCAGCGGCGTTATTTTCGCC CCGTTATTTGCCCCGGCACCGCCATTGACGCTGGATGAAAAACCTGAACCAAAGGTGACA TTATGAATGAAAATCAACAGATATCTTCTGGGTATGGTTTCGTTTATAGCATTTTCATCA TATCTACAAGCGGCAACCCTTGATTATCGGCATGAATATGCTGATAGAACCAGAATTAAT AAAGACCGTATTGCTATAATTGAAAAGCTTCCTAACGGCATTGGTTTTTATGTCGATGCC AGCGTTAAATCGGGAGGAGTAGATGGTGAGCAGGATAAGCATTTAAGCGATCTCGTCGCA AACGCTATAGAACTGGGCGTAAGTTATAATTATAAAGTTACGGACCATTTTGTTTTGCAG CCTGGATTTATATTTGAAAGCGGTCCAGACACTTCAATTTATAAGCCTTATTTAAGGGCG CAATATAATTTTGATTCTGGTGTTTATATGGCTGGTCGTTACCGTTATGACTATGCAAGG AAGACAGCTAACTATAATGATGATGAGAAAACGAATAGATTTGATACTTATATAGGTTAT GTTTTTGATGAGTTGAAATTGGAATATAAATTTACCTGGATGGATAGCGATCAAATTAAA TTTGATAACAAAAAAACAAACTATGAACATAATGTGGCTTTAGCCTGGAAACTGAATAAG TCATTTACACCATACGTTGAGGTCGGAAATGTAGCGGTGAGAAATAATACCGATGAGAGA CAGACCCGTTATCGCGTTGGATTACAATACCACTTTTGAATGACGAAATACGGTGTTATA GGTACAGGTTATTTTGGCGCTGAACTGGCGCGATTTATGTCTAAGGTTGAAGGGGCGAAA ATCACTGCGATTTACGATCCGGTAAATGCGGCTCCGATAGCGAAAGAGCTGAACTGTGTC GCCACTTCAACGATGGAGGCGCTTTGTACCCATCCTGATGTGGATTGCGTAATTATTGCT TCACCAAATTACTTACATAAAGCGCCGGTCATTGCGGCGGCTAAAGCGGGTAAACACGTG TTTTGTGAAAAACCTATCGCCTTAAATTACCAGGATTGTAAGGATATGGTTGATGCCTGC AAAGAAGCTGGTGTTACCTTTATGGCGGGTCACGTTATGAACTTTTTTCACGGGGTTCGC CACGCTAAAGCGCTCATCAAAGCCGGTGAAATCGGTGAAGTTACACAAGTTCACACTAAA CGTAATGGTTTTGAAGACGTGCAGGATGAGATCTCATGGAAGAAGATTCGCGCAAAGTCA GGTGGGCATCTGTACCATCACATTCACGAGCTAGATTGTACACTGTTCATCATGGATGAA ACCCCATCCCTGGTTTCAATGGCGGCGGGGAATGTTGCGCACAAAGGTGAAAAATTTGGT GATGAAGATGATGTTGTCCTAATCACCCTTGAGTTTGAAAGCGGTCGTTTCGCGACACTT CAGTGGGGATCATCGTTCCACTACCCTGAGCACTATGTATTAATTGAGGGCACGACAGGT GCAATTCTCATTGATATGCAAAACACGGCTGGTTATCTAATAAAAGCGGGCAAAAAAACA CACTTTCTTGTGCATGAAAGCCAGGCGGAGGATGATGATCGTCGCAACGGTAACATATCC AGCGAGATGGATGGCGCAATCGCTTATGGTAAACCCGGTAAACGTACGCCGATGTGGCTC TCATCAATTATGAAACTGGAGATGCAGTACTTGCATGATGTGATAAACGGTCTGGAGCCA GGCGAGGAGTTTGCTAAATTGCTAACGGGAGAAGCGGCGACAAATGCCATTGCTACCGCT GATGCTGCGACGCTTTCTTCAAACGAGGGGCGCAAAGTTAAACTCACTGAAATTCTTGGC TAAATGACATCACGTCTTCAGGTCATACAGGGTGATATCACTCAACTTAGCGTCGATGCG ATTGTGAATGCCGCTAACGCATCATTAATGGGCGGCGGTGGCGTAGACGGCGCAATTCAT CGCGCGGCGGGGCCGGCATTGCTGGACGCCTGTAAACTCATCCGTCAGCAACAGGGCGAA TGTCAGACGGGACATGCGGTTATCACGCCTGCTGGCAAGCTTTCGGCAAAGGCGGTTATT CACACAGTGGGGCCCGTCTGGCGAGGCGGCGAACACCAGGAAGCTGAGCTACTCGAAGAG GCATACCGGAATTGTTTGCTGCTTGCCGAGGCGAATCACTTTCGTTCCATCGCTTTTCCG GCAATCAGTACCGGCGTTTATGGCTATCCACGCGCCCAGGCCGCTGAAGTCGCCGTCAGG ACGGTTTCAGATTTTATTACCCGTTACGCTCTGCCTGAACAGGTATACTTTGTCTGTTAT GATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAGGCGACGACCCTGCC TGA Roary-3.8.0/t/data/expected_reannotated_groups_file000066400000000000000000000001421304207556500225040ustar00rootroot00000000000000hly: 1_1 2_1 3_1 argF: 1_3 3_3 group_4: 2_4 3_4 speH: 1_2 2_2 yfnB: 3_5 group_7: 2_7 group_6: 1_6 Roary-3.8.0/t/data/expected_sample_weights_accessory_graph.dot000066400000000000000000000003701304207556500246410ustar00rootroot00000000000000digraph g { /* list of nodes */ "group_X"; "group_X"; "group_X"; "group_X"; "group_X"; /* list of edges */ "group_X" -> "group_X" [weight = "2"]; "group_X" -> "group_X" [weight = "2"]; "group_X" -> "group_X" [weight = "2"]; } Roary-3.8.0/t/data/expected_sample_weights_core_accessory_graph.dot000066400000000000000000000007131304207556500256520ustar00rootroot00000000000000digraph g { /* list of nodes */ "group_A"; "group_B"; "group_C"; "group_D"; "group_E"; "group_F"; "group_G"; "group_H"; /* list of edges */ "group_A" -> "group_B" [weight = "2"]; "group_C" -> "group_B" [weight = "2"]; "group_C" -> "group_D" [weight = "2"]; "group_E" -> "group_D" [weight = "0.625"]; "group_E" -> "group_F" [weight = "0.625"]; "group_F" -> "group_G" [weight = "2"]; "group_G" -> "group_H" [weight = "2"]; } Roary-3.8.0/t/data/expected_set_difference_common_set000066400000000000000000000000671304207556500230000ustar00rootroot00000000000000group_1: 1_1 2_1 3_1 group_3: 1_3 3_3 group_2: 1_2 2_2 Roary-3.8.0/t/data/expected_set_difference_common_set_statistics.csv000066400000000000000000000010601304207556500260360ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1.fa.tmp.filtered.fa","query_2.fa.tmp.filtered.fa","query_3.fa.tmp.filtered.fa" "group_1","","","3","3","1","","","","","","","","","1_1","2_1","3_1" "group_2","","","2","2","1","","","","","","","","","1_2","2_2","" "group_3","","","2","2","1","","","","","","","","","1_3","","3_3" Roary-3.8.0/t/data/expected_set_difference_unique_set_one000066400000000000000000000000151304207556500236500ustar00rootroot00000000000000group_6: 1_6 Roary-3.8.0/t/data/expected_set_difference_unique_set_one_statistics.csv000066400000000000000000000006421304207556500267220ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1.fa.tmp.filtered.fa","query_2.fa.tmp.filtered.fa","query_3.fa.tmp.filtered.fa" "group_6","","","1","1","1","","","","","","","","","1_6","","" Roary-3.8.0/t/data/expected_set_difference_unique_set_two000066400000000000000000000000531304207556500237020ustar00rootroot00000000000000group_4: 2_4 3_4 group_7: 2_7 group_5: 3_5 Roary-3.8.0/t/data/expected_set_difference_unique_set_two_statistics.csv000066400000000000000000000010471304207556500267520ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1.fa.tmp.filtered.fa","query_2.fa.tmp.filtered.fa","query_3.fa.tmp.filtered.fa" "group_4","","","2","2","1","","","","","","","","","","2_4","3_4" "group_5","","","1","1","1","","","","","","","","","","","3_5" "group_7","","","1","1","1","","","","","","","","","","2_7","" Roary-3.8.0/t/data/expected_some_different_output000066400000000000000000000066711304207556500222300ustar00rootroot00000000000000csgE: 11111_1#11_04109 22222_2#22_04109 flgJ: 11111_1#11_04150 22222_2#22_04150 hpaA: 11111_1#11_04075 22222_2#22_04075 sopB: 11111_1#11_04059 22222_2#22_04059 csgG: 11111_1#11_04107 22222_2#22_04107 hpcB: 11111_1#11_04070 22222_2#22_04070 ycdZ: 11111_1#11_04106 22222_2#22_04106 uraH: 11111_1#11_04063 22222_2#22_04063 yceJ: 11111_1#11_04126 22222_2#22_04126 flgL: 11111_1#11_04152 22222_2#22_04152 ybhO_2: 11111_1#11_04116 22222_2#22_04116 msyB: 11111_1#11_04121 22222_2#22_04121 hpaI: 11111_1#11_04073 22222_2#22_04073 yedV: 11111_1#11_04061 22222_2#22_04061 mdoC: 11111_1#11_04117 22222_2#22_04117 nanE: 11111_1#11_04097 22222_2#22_04097 csgF: 11111_1#11_04108 22222_2#22_04108 sigE: 11111_1#11_04058 22222_2#22_04058 flgE: 11111_1#11_04145 22222_2#22_04145 hpcD: 11111_1#11_04071 22222_2#22_04071 hpaX: 11111_1#11_04074 22222_2#22_04074 mdtH: 11111_1#11_04134 22222_2#22_04134 yccJ: 11111_1#11_04084 22222_2#22_04084 yjhC: 11111_1#11_04101 22222_2#22_04101 ghrA: 22222_2#22_04103 11111_1#11_04103 csgB: 11111_1#11_04111 22222_2#22_04111 wrbA: 11111_1#11_04085 22222_2#22_04085 sglT: 11111_1#11_04096 22222_2#22_04096 cbpM: 11111_1#11_04077 22222_2#22_04077 flgI: 11111_1#11_04149 22222_2#22_04149 hpaR: 11111_1#11_04066 22222_2#22_04066 hpcC_1: 11111_1#11_04068 22222_2#22_04068 copR: 11111_1#11_04062 22222_2#22_04062 agp: 11111_1#11_04083 22222_2#22_04083 hpaB: 11111_1#11_04065 22222_2#22_04065 group_33: 11111_1#11_04114 22222_2#22_04114 mdoH: 11111_1#11_04119 22222_2#22_04119 flgD: 11111_1#11_04144 22222_2#22_04144 cbpA: 11111_1#11_04078 22222_2#22_04078 putA: 11111_1#11_04089 22222_2#22_04089 hpaC: 11111_1#11_04064 22222_2#22_04064 flgG: 11111_1#11_04147 22222_2#22_04147 rutR: 11111_1#11_04087 22222_2#22_04087 flgK: 11111_1#11_04151 22222_2#22_04151 group_56: 11111_1#11_04088 22222_2#22_04088 pepD_2: 11111_1#11_04060 22222_2#22_04060 csgC: 11111_1#11_04113 22222_2#22_04113 csgD: 11111_1#11_04110 22222_2#22_04110 hpcG: 11111_1#11_04072 22222_2#22_04072 ycdY: 11111_1#11_04105 22222_2#22_04105 scsC: 11111_1#11_04081 22222_2#22_04081 flgF: 11111_1#11_04146 22222_2#22_04146 phoH: 11111_1#11_04092 22222_2#22_04092 flgH: 11111_1#11_04148 22222_2#22_04148 group_52: 11111_1#11_04091 22222_2#22_04091 resA: 11111_1#11_04082 22222_2#22_04082 yceI_2: 11111_1#11_04125 22222_2#22_04125 bssS: 11111_1#11_04129 22222_2#22_04129 yidK: 11111_1#11_04095 22222_2#22_04095 group_47: 11111_1#11_04086 22222_2#22_04086 mdoG: 11111_1#11_04118 22222_2#22_04118 yiiy: 11111_1#11_04099 22222_2#22_04099 solA: 11111_1#11_04128 22222_2#22_04128 group_93: 11111_1#11_04120 22222_2#22_04120 scsB: 11111_1#11_04080 22222_2#22_04080 ymdB: 11111_1#11_04115 22222_2#22_04115 ybbH_2: 11111_1#11_04093 22222_2#22_04093 putP: 11111_1#11_04090 22222_2#22_04090 hpaG: 11111_1#11_04067 22222_2#22_04067 nanM: 11111_1#11_04098 22222_2#22_04098 scsA: 11111_1#11_04079 22222_2#22_04079 rnz: 11111_1#11_04076 22222_2#22_04076 ycdX: 11111_1#11_04104 22222_2#22_04104 nanT_3: 11111_1#11_04100 22222_2#22_04100 hpcC_2: 11111_1#11_04069 22222_2#22_04069 flgA: 11111_1#11_04141 grxB: 11111_1#11_04133 mviN: 11111_1#11_04138 group_12: 11111_1#11_04055 yceH: 11111_1#11_04136 pipB2_2: 11111_1#11_04056 flgC: 11111_1#11_04143 yceE: 11111_1#11_04122 htrB_2: 11111_1#11_04123 mviM: 11111_1#11_04137 csgA: 22222_2#22_04112 flgN: 11111_1#11_04139 rimJ: 11111_1#11_04135 flgB: 11111_1#11_04142 group_31: 22222_2#22_04141 group_14: 11111_1#11_04112 yceB: 11111_1#11_04132 pyrC: 11111_1#11_04131 flgM: 11111_1#11_04140 group_17: 11111_1#11_04124 Roary-3.8.0/t/data/expected_summary_statistics.txt000066400000000000000000000003001304207556500223630ustar00rootroot00000000000000Core genes (99% <= strains <= 100%) 1 Soft core genes (95% <= strains < 99%) 1 Shell genes (15% <= strains < 95%) 24 Cloud genes (0% <= strains < 15%) 4 Total genes (0% <= strains <= 100%) 30 Roary-3.8.0/t/data/expected_uneven_sequences.fa000066400000000000000000000001321304207556500215410ustar00rootroot00000000000000>1 aNN >2 aaN >3 aaa >4 aaaaNN >5 aaaaaN >6 aaaaaa >7 aaaaaaaNN >8 aaaaaaaaN >9 aaaaaaaaa Roary-3.8.0/t/data/expected_union_of_groups.gg000066400000000000000000000001571304207556500214170ustar00rootroot00000000000000group_1: 1_1 2_1 3_1 group_3: 1_3 3_3 group_4: 2_4 3_4 group_2: 1_2 2_2 group_7: 2_7 group_5: 3_5 group_6: 1_6 Roary-3.8.0/t/data/genbank_gbff/000077500000000000000000000000001304207556500163725ustar00rootroot00000000000000Roary-3.8.0/t/data/genbank_gbff/genbank1.gff000066400000000000000000000353531304207556500205550ustar00rootroot00000000000000##gff-version 3 ##sequence-region CVAX01000001 1 489098 # conversion-by bp_genbank2gff3.pl # organism Salmonella enterica subsp. enterica serovar Typhi # Note Salmonella enterica subsp. enterica serovar Typhi genome assembly 10426_1#28, scaffold ERS325254SCcontig000001, whole genome shotgun sequence. # date 02-APR-2015 CVAX01000001 GenBank region 1 489098 . + 1 ID=CVAX01000001;Dbxref=BioProject:PRJEB3215,taxon:90370;Name=CVAX01000001;Note=Salmonella enterica subsp. enterica serovar Typhi genome assembly 10426_1#28%2C scaffold ERS325254SCcontig000001%2C whole genome shotgun sequence.;collection_date=1994;country=Viet Nam;date=02-APR-2015;isolation_source=Not known;mol_type=genomic DNA;organism=Salmonella enterica subsp. enterica serovar Typhi;serovar=H58;strain=dtc71 CVAX01000001 GenBank gene 358 1212 . - 1 ID=ERS325254_00002;Name=kdsA;locus_tag=ERS325254_00002 CVAX01000001 GenBank mRNA 358 1212 . - 1 ID=ERS325254_00002.t01;Parent=ERS325254_00002 CVAX01000001 GenBank CDS 358 1212 . - 1 ID=ERS325254_00002.p01;Parent=ERS325254_00002.t01;Dbxref=GI:804224942;eC_number=2.5.1.55;Name=kdsA;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004730486.1;locus_tag=ERS325254_00002;product=2-dehydro-3-deoxyphosphooctonate aldolase;protein_id=CQU24961.1;transl_table=11;translation=length.284 CVAX01000001 GenBank exon 358 1212 . - 1 Parent=ERS325254_00002.t01 CVAX01000001 GenBank gene 1250 2059 . - 1 ID=ERS325254_00003;Name=ERS325254_00003 CVAX01000001 GenBank mRNA 1250 2059 . - 1 ID=ERS325254_00003.t01;Parent=ERS325254_00003 CVAX01000001 GenBank CDS 1250 2059 . - 1 ID=ERS325254_00003.p01;Parent=ERS325254_00003.t01;Dbxref=GI:804224943;Name=ERS325254_00003;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004730487.1;product=regulator;protein_id=CQU25012.1;transl_table=11;translation=length.269 CVAX01000001 GenBank exon 1250 2059 . - 1 Parent=ERS325254_00003.t01 CVAX01000001 GenBank gene 2063 2452 . - 1 ID=ERS325254_00004;Name=sirB2;locus_tag=ERS325254_00004 CVAX01000001 GenBank mRNA 2063 2452 . - 1 ID=ERS325254_00004.t01;Parent=ERS325254_00004 CVAX01000001 GenBank CDS 2063 2452 . - 1 ID=ERS325254_00004.p01;Parent=ERS325254_00004.t01;Dbxref=GI:804224944;Name=sirB2;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004730488.1;locus_tag=ERS325254_00004;product=regulator;protein_id=CQU25030.1;transl_table=11;translation=length.129 CVAX01000001 GenBank exon 2063 2452 . - 1 Parent=ERS325254_00004.t01 CVAX01000001 GenBank gene 2449 3282 . - 1 ID=ERS325254_00005;Name=prmC;locus_tag=ERS325254_00005 CVAX01000001 GenBank mRNA 2449 3282 . - 1 ID=ERS325254_00005.t01;Parent=ERS325254_00005 CVAX01000001 GenBank CDS 2449 3282 . - 1 ID=ERS325254_00005.p01;Parent=ERS325254_00005.t01;Dbxref=GI:804224945;eC_number=2.1.1.-;Name=prmC;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570225.1;locus_tag=ERS325254_00005;product=N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase;protein_id=CQU25049.1;transl_table=11;translation=length.277 CVAX01000001 GenBank exon 2449 3282 . - 1 Parent=ERS325254_00005.t01 CVAX01000001 GenBank gene 3282 4364 . - 1 ID=ERS325254_00006;Name=prfA;locus_tag=ERS325254_00006 CVAX01000001 GenBank mRNA 3282 4364 . - 1 ID=ERS325254_00006.t01;Parent=ERS325254_00006 CVAX01000001 GenBank CDS 3282 4364 . - 1 ID=ERS325254_00006.p01;Parent=ERS325254_00006.t01;Dbxref=GI:804224946;Name=prfA;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004730490.1;locus_tag=ERS325254_00006;product=peptide chain release factor 1 (RF-1);protein_id=CQU25068.1;transl_table=11;translation=length.360 CVAX01000001 GenBank exon 3282 4364 . - 1 Parent=ERS325254_00006.t01 CVAX01000001 GenBank gene 4405 5661 . - 1 ID=ERS325254_00007;Name=hemA;locus_tag=ERS325254_00007 CVAX01000001 GenBank mRNA 4405 5661 . - 1 ID=ERS325254_00007.t01;Parent=ERS325254_00007 CVAX01000001 GenBank CDS 4405 5661 . - 1 ID=ERS325254_00007.p01;Parent=ERS325254_00007.t01;Dbxref=GI:804224947;eC_number=1.2.1.70;Name=hemA;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004730491.1;locus_tag=ERS325254_00007;product=glutamyl-tRNA reductase;protein_id=CQU25084.1;transl_table=11;translation=length.418 CVAX01000001 GenBank exon 4405 5661 . - 1 Parent=ERS325254_00007.t01 CVAX01000001 GenBank gene 5975 6598 . + 1 ID=ERS325254_00008;Name=hemM;locus_tag=ERS325254_00008 CVAX01000001 GenBank mRNA 5975 6598 . + 1 ID=ERS325254_00008.t01;Parent=ERS325254_00008 CVAX01000001 GenBank CDS 5975 6598 . + 1 ID=ERS325254_00008.p01;Parent=ERS325254_00008.t01;Dbxref=GI:804224948;Name=hemM;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004730492.1;locus_tag=ERS325254_00008;product=outer membrane lipoprotein;protein_id=CQU25103.1;transl_table=11;translation=length.207 CVAX01000001 GenBank exon 5975 6598 . + 1 Parent=ERS325254_00008.t01 CVAX01000001 GenBank gene 6595 7446 . + 1 ID=ERS325254_00009;Name=ipk;locus_tag=ERS325254_00009 CVAX01000001 GenBank mRNA 6595 7446 . + 1 ID=ERS325254_00009.t01;Parent=ERS325254_00009 CVAX01000001 GenBank CDS 6595 7446 . + 1 ID=ERS325254_00009.p01;Parent=ERS325254_00009.t01;Dbxref=GI:804224949;eC_number=2.7.1.-,2.7.1.148;Name=ipk;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004730493.1;locus_tag=ERS325254_00009;product=isopentenyl monophosphate kinase;protein_id=CQU25122.1;transl_table=11;translation=length.283 CVAX01000001 GenBank exon 6595 7446 . + 1 Parent=ERS325254_00009.t01 ##FASTA >CVAX01000001 GCTTCCAGAATTCGTACGTTTTTCCATTCACACAATTTTCTTAATATGCTGCCTACTGCC CTACGCTTCTCTCCATAGAACGCTTGTCTTCGGTATTTGGGCGCGAAAACTATGTGATAT TTACAGTTCCATCGGGTGTGCGCTAAGCTCTTTTCGTCCCCCATTGGGACCCCCTTTTGA TTTCTTGTTGAACTTTTGCAGTCGCCAGACCGCAAGATGTTTTAACAAATCAAAAGGGGT TTTAATAACTGGCTTAAAGCTGAAAGCTTTCCGGAACCCCCAGCCTAGCTGGGGGTTTTC CATAGACAAAAAAGCCGGATAGTATCTTATCCGGCCTACACAAGCTAAAAACCGCAATCA GTTCTCGGTATCCAGCTCGTCGAAGCTTTTCACCAAATCATCAATCGCTTTTATCTGGGT CAGGAACTGCTCCAGTTTCGCCAGCGGCAGCGCGGAAGGACCGTCGCACTTCGCGTTAGC CGGGTCCGGATGCGACTCCAGGAACAGGCCCGCCAGACCGACAGCCATACCGGCGCGCGC CAGCTCGGTCACCTGACCACGACGACCGCCCGAGGCAGCGCCAAATGGGTCGCGGCATTG CAGCGCATGGGTAACGTCGAAAATCACCGGCGAGTTGCCGGAGACCTTTTTCATCACGCT AAAGCCCAGCATATCCACCACCAGGTTGTCATAACCGAAGTTCGCGCCGCGATCGCACAG AATCACCTTATCGTTACCGCCCTCATGGAACTTATCCACGATATTGCCCATCTGACCCGG GCTTACAAACTGCGGCTTTTTCACGTTAATCACAGCGCCGGTTTTCGCCATCGCTTCCAC CAGGTCGGTCTGGCGCGCCAAAAACGCCGGGAGCTGAATCACGTCAACCACATCAGCCAC AGGCTGCGCCTGGCTGGCTTCATGGACGTCAGTGATCACTTTTACGCCAAATGTCTGTTT GAGTTCCTGGAAGATTTTCATCCCTTCTTCCAGACCCGGCCCACGGTAAGAGTGAATAGA GGAACGGTTGGCTTTATCAAAAGAGGCCTTGAACACGTAAGGAATACCCAGCTTCTGGGT AACGGTTACGTAGTGCTCACAAATGCGCATTGCCAGATCGCGTGACTCCAGCACGTTCAT ACCGCCAAACAGCACAAACGGCAGGTCATTTGCCACCTTAATGTCGCCAATGTTAACCAC TTTTTGTTTCATAGGATCGCCTTACACTTATAGGTAAAATGTCGGTTAATTAATGTAGAA CAATTTGCTTGTGCGCAATGGTGTTGATCTGCGCACGAATCATTTCGCTGATCGGGTCTT CCGGACACTGTTCAACGAAGTAGCTTAAATCAGTCAGCGCAACGTGTTCACACTCAAGCT GCGCGTAGATCAACCCGCGGTCACGGATTTCGTAAGGATCTTCCGGGTTAAATTGCAACA ATGCTTCGCTAACGCGCAGCGCCAGCTCCATTTGCCGTTCCTCCATCAGCGAGGATTTCA GCGTATCCAGTAGCTTACGAATCACTTCGGCGTTATCCGCTTCGTCCAAATCTTCGTTAA ACAACTCGGCGACCGGACTAATATTGCCTTTTAACCAGACTTCGAGGGTATGTTCATCAA GCGTTTCACCGTTGAACGGGTTAATCAGCCACATTTCTCCTTCCAGCGATTCAATACGCA AAATCAGCTGCGTTGGGAAGATAACGGGCACCAACGGCAAATCAAGACGGTTTGCTATCC ATAATAAAATAGCGCCCAACGATACAGCGCTCCCCTGGCGTTTTTTCAGGACTTTATCGA GCCATAAAGCATCAGAAAGACGGTAGACGCCGCGGGAATCCGTGAACCCCCACTCGCCGT AAAAAAGTGCCAGCAATTTTTCCAGTTGCTCATCCTGAGACAGGAGCTGGCTAATTTCTT CCTGCGCCAGACTGACCAGACGTTCCAGTTCGTCGTAGACAAACTGCGTGGGAAAATCCA GGCGAATCATCTCTGATGCCAGGATCATGCCATCACACAGCGGCGCATTGTTAAATTCGA AATCAGCTAACGACCTCATGACTTACCCCAGTAACGGTATTTTTGTGGTGGCGAGTTTAA TGATGATGTACAGCACCACCAGCGCCAGCGGGAAAGCGATAAAACGCGCCTGCTGGCTGC GCGCCTGACGATAATCAAGCGCAATAAAACCCAAAACGATGTAGATGATAACGCCAAACA GTTTTTCAGTCAGCCATGAGCCCGACTCCGTGAATGGCAGGATGTGCGTTTTAACGATTA ACCCAATACCGCTAAGCAGTAACAGGGTATCTATGACGGGAGGCACGATTCGTGTCCAGC GCGCGGCGGCCAACGCATGGCCGCAATAGCGCCACCAGTAACGAGCGACAAACAAACTGA CGGAGAGCGCAACACAAATAAGATGAAGCGTGAGCAACATTGCAATTGTCATGGCGTAAA ACGCCCGCAGGCCACGCGTTCATTGCCACCATAATCACGACACGTTTCTACATCCGTGTA ACCAGACCGCCTGAAAGCCGCTCTTACCGCTTCGCCCTGCCGCCAACCGTGTTCCAGCAG CAGGAAGCCGCCGGGCGTTAACATCTGGCGGGCATTATCGATAATATGCGTAAGATCCGC CATACCGTTTTCGTCCGCCACCAACGCTGAGCGCGGTTCAAAGCGTACATCGCCTTCGCT AAGGTGCGGGTCCTGCGCGTCAATGTAGGGCGGATTGCTGACAATCATGTCGAACTGCTG CCCCGATAGTGCGCTGAACCAACAACTTTGCAGTATACGCACATTCCGGATAGCCAAATG TTCCGCGTTGCGTATCGCCAGCGCAACCGCATCAGGCATACGATCGACCGCAGTCACCTC GCAATCCGGTCGCTCGCAGGCCAGCGCCAGCGCAATCGCGCCGGTTCCGGTGCCTAAATC CAGAATACGACAGGTTTTGACCGGCAATCGCGCCAACGCCTGTTCAACCAGACATTCGGT ATCCGGGCGCGGGATTAGCGTGGCGGGAGAAACGAAGAGCGGCAGCGACCAAAATTCGCG TAAGCCCGTCAGGTACGCAATGGGTTCGCCCTGTTTACGCCGCTGCAGCAGCTCCGCGAG CTGTTGTTGCTGGACATCGGTAAGCGGCGTTTCGCCAAAGGCCATGATATACGTCCGCCT CTTGCCCGTAACGTACTCAAGCAGGATCTCGGCGTCGCGCCGGGGGCTGTCGCTGTCCCG GAGCTGGTTTACCGCCTCATGTAGCCAGTGCTGAAAATCCATTATTCCTGCTCGGACAAC GCGGCTAACAGGTCAGCCTGGTGTTCCTGAACAATCGGCTCAATCAGCATATCCAGCTTA CCTTCCATCGTTTCATCAAGGCGATATAACGTCAGATTAATACGATGATCGGTCACGCGC CCCTGCGGGAAATTATAGGTCCGGTTACGATCGCTGCGATCGCCGCTGCCAAGCAGGTTG CGGCGCGTTGACGCCTCGGCCTGCTGGCGTTTTGCCGTTTCGGCGGCGTGAATGCGCGCC CCGAGCACCGAGAGCGCTTTCGCTTTGTTTTTATGCTGCGAACGCTCGTCCTGGCATTCC ACCACGATGCCGGTCGGCAAGTGGGTAATACGGATAGCGGAGTCGGTGGTGTTAACGTGC TGACCGCCCGCGCCGGAAGAACGAAACGTATCAATGCGCAGATCCGCCGGGTTAATATCC GGCAGCTCGGCTTCCGGCAGCTCCGGCATCACGGCGACGGTACAGGCGGAGGTATGGATA CGCCCCTGCGACTCGGTCGCCGGAACACGCTGTACGCGGTGTCCGCCGGACTCAAATTTC AGTCGGCCATACACGCCGTCGCCGCTGATTTTGGCGATGATCTCTTTATAACCGCCATGC TCGCCTTCGCTCATGCTCATGATCTCCACGCGCCAGCGGCGCGCTTCGGCATAACGGCTG TACATGCGGAACAGATCGCCGGCAAACAGCGCGGCTTCGTCGCCGCCAGTGCCGGCGCGA ACCTCAAGGAACGCGTTTCGTTCATCGTCCGGATCTTTCGGCAGCAGCAGTACCTGTAAC TGTTGCTCCAGTTGTTCGCTTTTTTCTTTCGCTTCGCGCAGTTCTTCCTGCGCCATTTCC CGCATTTCAGGATCGTCGAGCATCATCTGAGCCGTCTCGATATCGTCCTGAACCTGTTGC CAGTCCGTAAAACAGCGAGAAACGTCGCTTAATTGCGCATATTCGCGCGACAATGCGCGA AAGCGGTCCTGGTCGGCGATAATTCCCGCATCGCCCAGCAACGCCTGAACTTCCTCATGG CGTTCGTGCAGGGCTTCCAGTTTGGCAACGATAGAAGGCTTCATAGGCGTAAATTCACCC TGTAAAAAAGTGTGGTGTGTGCTGCTACTCCAGCCCGAGGCTGTCGCGCAGAATATTCAG GCGTTCGTCATCCCCGTCACGGGCAGCCTGTTGAAGTGATTTCGTTGGCGCATGAATCAG GCGGTTGGTCAGTTTCCATGCCAGATCCTGCAAGATGGCTTGCGCATCACCGCCCTGTTG AAGGGCCGACAGCGCTTTGGTAGTCAGTTCGTCACGAATCTGCTCCGACTGACTACGGTA TTCCCGAATGGTCTCGCTGGCCCCCTGGGCGCGTAGCCAGGCCATAAACTCGCTGGCTTC CTGCTCAACAATCGTTTCCGCTTCCACCGCCGCAGCCTGACGCTGCGCCAGATTATGCGA AATGATGCTCTGTAAATCATCGACGCTATAAAGATAAGCGTTCGCCAGTTTGCCGACTTC CGGCTCAACGTCGCGCGGTACGGCGATATCCACCAGCAGCATCGGCTGGTTGCGACGGCT TTTTAATGCGCGCTCCACCATGCCTTTACCGATAATCGGCAGCGGGCTGGCGGTCGAACT GATGATAATATCGGCATCCTGCAAGCGGGCGTCGATATCGCTGAGCGAGATAACCTCAGC GCCAACCTCATCCGCCAGGGCTTGCGCGCGCTCGCGGGTTCGGTTGGCGATAATCATCTT TTGTACTTTATGCTCGCGCAGGTGACGCGCCACCAGTTCAATAGTTTCGCCCGCGCCAAC TAACAGTACAGTGACCGTCGAGAGCGATTCAAAGATTTGGCGGGCGAGCGTACAGGCGGC AAACGCGACGGAGACGGCGCTGGCGCCGATATCGGTTTCAGTCCGCACTCGCTTGGCGAC GGAAAAAGACTTCTGAAACATTCGCTCCAGCGCGCTGGCGTTAAGGTGGCCTTTTTGCGA ATCCGCAAACGCTTTTTTCACCTGACCGAGGATTTGCGGTTCGCCCAGCACCAGTGAATC CAGACCGCTGGCGACGCGCATCAGGTGGCTGACGGCGTCATTGTCCTGATGCCAGTACAG ACTGTTGCGCAGATCGTCCTCGTTCAGGTTATGGTAATCGCATAACCAGCGGATCAGCGC TTCTTGCAGGTTATCCTGCTCTTCCACGCTCAAATACAGCTCTGTACGGTTACAGGTTGA CAGCACGACCCCGCCCTGCACCATTGGCTGCGCAAGCAGGCTGTCCAGCGCCTGATCAAG CGTGTCCGGCGAAAACGTTACGCGTTCTCGCAGCGATACAGGTGCCGTTTTATGGTTAAT ACCGAGTGCTAAAAGGGTCATGTCTGCGGGAGTAGTACCAGCGTTGATATGGTTAGTCTG CTTGCATCATACAGGATGCGCGTGGTCAATAAAAGAGAGAGCCCCCTTTTGGAGTAATTG GCAGCGCTCGCTAATTTGATGATTTAAGACAACTTGAAAGTAGACGATGTCACCAGGCGG CGCTAGCATTAAAGGCTATAACTGTAACCGATAGCAAAAATTTGCCGAATCGCGGCGCGA ACGTTTTTACAGCTTGCCGGTTCAGTTTTCAGGCCTGATAAGCGTAACGCCTTCAGGCAA TTATTGCACCGTATCACAAGGATTCGTCATCACTATGACCCTGCCCGATTTTCGCCTGAT TCGTCTACTGCCGTTAGCAAGCCTGGTTCTCACCGCCTGTACGCTTCCTGGGCATAAAGG CCCGGGCAAGAGCCCGGATTCCCCTCAGTGGCGCCAGCATCAGCAAGAGGTGCGTCATCT GAATCAATACCAGACGCGCGGCGCCTTTGCTTACATCTCAGATGATCAGAAAGTCTATGC GCGCTTCTTCTGGCAACAGACCGGACAGGATCGCTACCGCCTGCTGCTTACCAACCCGCT GGGCAGCACCGAGCTGGAGCTTAACGCCCAGCCGGGCAACGTCCAGTTGGTGGATAACAA AGGCCAGCGTTATACCGCCGATGACGCCGAAGAGATGATCGGCAAACTCACCGGGATGCC GATTCCGTTAAACAGCCTGCGGCAGTGGATCCTCGGTCTGCCTGGCGATGCCACCGACTA CAAACTGGACGACCAGTACCGCCTGAGCGAAGTGAACTACCACCAGGATGGTAAAAACTG GAAAGTGGTTTACGGTGGCTATGACAGCAAAACGCAGCCTGCCATGCCAGCCAATATGGA GCTTTCAGATGGCAGTCAGCGCATTAAGCTGAAAATGGATAACTGGATTGTGAAATGATG ACCCATTGGCCTTCTCCGGCAAAATTAAATCTGTTTTTATATATCACCGGACAGCGTGCA GACGGCTACCACACGCTGCAGACGCTGTTTCAGTTTCTGGATTATGGCGACACACTCCAC ATCGAACCGCGTCACGATGGCGAAATCCATTTATTAACGCCGGTAACCGGCGTTGAAAAT GAAGACAATCTGATCGTCCGCGCCGCGCGGCTGTTGATGAAAGTCGCCTCGGAGAGTGGA CGCCTGCCCGCCGGAAGCGGCGCGGATATCAGCATTGAGAAGCGCCTTCCCATGGGCGGC GGTCTGGGTGGCGGCTCGTCTAACGCCGCGACCGTTCTGGTGGCGCTCAATCATCTTTGG CAATGCGGGCTTTCCATTGATGAACTGGCGACGCTCGGCCTGACGCTCGGCGCCGACGTC CCGGTCTTTGTTCGTGGCCACGCCGCGTTTGCCGAAGGCGTAGGCGAAATATTAACGCCG GTGAATCCGCCGGAAAAATGGTATCTGGTCGCGCACCCTGGCGTAAGCATTCCGACGCCA GTTATCTTTAAAGATCCTCAATTGCCGCGTAATACGCCAAAAAGGTCAATAGATACGTTA CTAAAATGTGAATTCAGCAATGATTGCGAGGTTATCGCAAGAAAACGTTTTCGCGAGGTT GATGCGGCGCTTTCCTGGCTGTTAGAATACGCGCCGTCGCGCCTGACTGGGACAGGGGCC TGTGTCTTTGCTGAATTCGATACAGAGTCTTGTGCTCGCCAGGTGCTTGAGCAAGCCCCG GAATGGCTCAATGCTTTTGTGGCGAAGGGTGTTAACCTTTCCCCATTGCATCGAGAGTTA CTCTAACGCATTCGGGTTTCAGGAAGATGGCGAAATGACGAGTCGCCGGTCATATATGCC GTATTTGACCGGTGTGAGGCATTGATACCAGCGCACATGAAACGTGAATGAAGACGAGTA AGCCGGGCAAGCTGAGCTTCGGTGACAACGTCACCTTGTTCCAGACGTTGCATCGCGCTC TTTAATACACCGCCTGGATAGGATTTTGCCTGGCCCGCACAGTTTTCGGCAGATTCTTTC CACCAATGGACGCATGCCTGAGGTTCTTCTCGTGCCTGATATGAAGCTTTTTGCTGGTAA CGCCACCCCGGAACTAGCACAACGTATTGCCAACCGCCTGTACACTTCTCTCGGCGACGC CGCCGTAGGTCGCTTTAGCGACGGCGAAGTCAGCGTACAAATCAACGAAAATGTACGCGG TGGTGATATTTTCATCATCCAGTCCACTTGTGCCCCAACCAACGACAACCTGATGGAATT GGTCGTTATGGTTGATGCCCTGCGTCGTGCTTCCGCAGGTCGTATCACCGCCGTTATCCC CTACTTTGGCTATGCACGTCAGGACCGTCGCGTACGTTCCGCCCGTGTGCCGATTACCGC AAAAGTTGTCGCTGACTTCCTGTCCAGCGTCGGCGTTGACCGCGTTCTCACCGTAGATCT GCATGCTGAACAGATCCAGGGCTTCTTTGACGTTCCGGTTGATAACGTGTTCGGTAGCCC AATCCTGCTCGAAGATATGCTGCAACTGAATCTGGATAACCCAATCGTGGTTTCCCCGGA TATTGGCGGCGTGGTTCGTGCCCGCGCTATCGCTAAGCTGCTGAACGATACCGATATGGC TATCATTGATAAACGTCGTCCGCGCGCGAACGTTTCTCAGGTGATGCACATCATCGGCGA CGTCGCTGGCCGTGACTGCGTGCTGGTTGATGATATGATCGATACCGGCGGTACTCTGTG CAAAGCAGCAGAAGCATTGAAAGAACGTGGCGCTAAACGCGTGTTTGCCTACGCGACGCA CCCGATCTTCTCAGGCAATGCGGCAAACAACCTGCGCAACTCCGTTATTGACGAAGTCGT TGTCTGTGACACCATTCCGCTGACCGACGAAATCAAAGCGCTGCCGAACGTGCGTACTTT GACCCTGTCAGGTATGCTGGCCGAAGCGATTCGCCGTATCAGCAACGAAGAATCGATTTC CGCCATGTTCGAGCATTGATCGAACCCGGATCTGAAACCCGCTGCGGCGGGTTTTTTTGT CTGTAACACCCTTTTATATGACTTATGCCTCCTTCACCTGCCATTTAGTTGACAGATGAT GCGCTCATGGATGAAACATTATTGTGAACAAATTATTTTCCTCACATGTGATGCCTTTCC GCGCTCTCATCGATGCTTGCTGGAAAGAAAAATATACCGCCTCCCGGTTCACCCGTGATG TGATAGCCGGGATCACCGTCGGGATTATTGCTATCCCGCTGGCGATGGCGCTGGCAATTG GCAGTGGCGTTGCGCCGCAGTATGGCCTCTATACCTCCGCTGTCGCCGGGATCGTGATCG CGCTAACCGGCGGCTCGCGCTTTAGCGTTTCCGGCCCTACCGCCGCGTTTGTGGTGATTT TGTATCCGGTGTCGCAACAGTTTGGTCTGGCGGGCCTACTGGTCGCCACGCTGATGTCGG GCTTCTTCCTGATCCTTTTCGGCCTGGCGAGACTGGGGCGATTGATTGAATATATCCCGG TGTCGGTCACGTTGGGTTTTACCTCAGGGATTGGTATTACCATCGGTACCATGCAGATTARoary-3.8.0/t/data/genbank_gbff/genbank1.gff.proteome.faa.expected000066400000000000000000000046141304207556500247300ustar00rootroot00000000000000>ERS325254_00002.p01 MKQKVVNIGDIKVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDK ANRSSIHSYRGPGLEEGMKIFQELKQTFGVKVITDVHEASQAQPVADVVDVIQLPAFLAR QTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFHEGGNDKVILCDRGANFGYDNLVVD MLGFSVMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRGQVTELARAGMAVGLAGLFLES HPDPANAKCDGPSALPLAKLEQFLTQIKAIDDLVKSFDELDTEN* >ERS325254_00003.p01 MRSLADFEFNNAPLCDGMILASEMIRLDFPTQFVYDELERLVSLAQEEISQLLSQDEQLE KLLALFYGEWGFTDSRGVYRLSDALWLDKVLKKRQGSAVSLGAILLWIANRLDLPLVPVI FPTQLILRIESLEGEMWLINPFNGETLDEHTLEVWLKGNISPVAELFNEDLDEADNAEVI RKLLDTLKSSLMEERQMELALRVSEALLQFNPEDPYEIRDRGLIYAQLECEHVALTDLSY FVEQCPEDPISEMIRAQINTIAHKQIVLH* >ERS325254_00004.p01 MTIAMLLTLHLICVALSVSLFVARYWWRYCGHALAAARWTRIVPPVIDTLLLLSGIGLIV KTHILPFTESGSWLTEKLFGVIIYIVLGFIALDYRQARSQQARFIAFPLALVVLYIIIKL ATTKIPLLG* >ERS325254_00005.p01 MDFQHWLHEAVNQLRDSDSPRRDAEILLEYVTGKRRTYIMAFGETPLTDVQQQQLAELLQ RRKQGEPIAYLTGLREFWSLPLFVSPATLIPRPDTECLVEQALARLPVKTCRILDLGTGT GAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLAIRNVRILQSCWFSALSGQQFDMI VSNPPYIDAQDPHLSEGDVRFEPRSALVADENGMADLTHIIDNARQMLTPGGFLLLEHGW RQGEAVRAAFRRSGYTDVETCRDYGGNERVACGRFTP* >ERS325254_00006.p01 MKPSIVAKLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQD DIETAQMMLDDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTG GDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESG GHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTT DSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGS GDRSDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSEQE * >ERS325254_00007.p01 MTLLALGINHKTAPVSLRERVTFSPDTLDQALDSLLAQPMVQGGVVLSTCNRTELYLSVE EQDNLQEALIRWLCDYHNLNEDDLRNSLYWHQDNDAVSHLMRVASGLDSLVLGEPQILGQ VKKAFADSQKGHLNASALERMFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIFESL STVTVLLVGAGETIELVARHLREHKVQKMIIANRTRERAQALADEVGAEVISLSDIDARL QDADIIISSTASPLPIIGKGMVERALKSRRNQPMLLVDIAVPRDVEPEVGKLANAYLYSV DDLQSIISHNLAQRQAAAVEAETIVEQEASEFMAWLRAQGASETIREYRSQSEQIRDELT TKALSALQQGGDAQAILQDLAWKLTNRLIHAPTKSLQQAARDGDDERLNILRDSLGLE* >ERS325254_00008.p01 MTLPDFRLIRLLPLASLVLTACTLPGHKGPGKSPDSPQWRQHQQEVRHLNQYQTRGAFAY ISDDQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGNVQLVDNKGQRYTADDAEE MIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEVNYHQDGKNWKVVYGGYDSKT QPAMPANMELSDGSQRIKLKMDNWIVK* >ERS325254_00009.p01 MMTHWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTLHIEPRHDGEIHLLTPVTGV ENEDNLIVRAARLLMKVASESGRLPAGSGADISIEKRLPMGGGLGGGSSNAATVLVALNH LWQCGLSIDELATLGLTLGADVPVFVRGHAAFAEGVGEILTPVNPPEKWYLVAHPGVSIP TPVIFKDPQLPRNTPKRSIDTLLKCEFSNDCEVIARKRFREVDAALSWLLEYAPSRLTGT GACVFAEFDTESCARQVLEQAPEWLNAFVAKGVNLSPLHRELL* Roary-3.8.0/t/data/genbank_gbff/genbank2.gff000066400000000000000000000443531304207556500205560ustar00rootroot00000000000000##gff-version 3 ##sequence-region CVBR01000001 1 488985 # conversion-by bp_genbank2gff3.pl # organism Salmonella enterica subsp. enterica serovar Typhi # Note Salmonella enterica subsp. enterica serovar Typhi genome assembly 10426_1#57, scaffold ERS325340SCcontig000001, whole genome shotgun sequence. # date 02-APR-2015 CVBR01000001 GenBank region 1 488985 . + 1 ID=CVBR01000001;Dbxref=BioProject:PRJEB3215,taxon:90370;Name=CVBR01000001;Note=Salmonella enterica subsp. enterica serovar Typhi genome assembly 10426_1#57%2C scaffold ERS325340SCcontig000001%2C whole genome shotgun sequence.;collection_date=1994;country=Viet Nam;date=02-APR-2015;isolation_source=Not known;mol_type=genomic DNA;organism=Salmonella enterica subsp. enterica serovar Typhi;serovar=H58;strain=ct1-65 CVBR01000001 GenBank gene 79 726 . - 1 ID=ERS325340_00001;Name=narL_1;locus_tag=ERS325340_00001 CVBR01000001 GenBank mRNA 79 726 . - 1 ID=ERS325340_00001.t01;Parent=ERS325340_00001 CVBR01000001 GenBank CDS 79 726 . - 1 ID=ERS325340_00001.p01;Parent=ERS325340_00001.t01;Dbxref=GI:804333227;Name=narL_1;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002147204.1;locus_tag=ERS325340_00001;product=transcriptional regulator NarP;protein_id=CQU31315.1;transl_table=11;translation=length.215 CVBR01000001 GenBank exon 79 726 . - 1 Parent=ERS325340_00001.t01 CVBR01000001 GenBank gene 2716 3507 . + 1 ID=ERS325340_00003;Name=ERS325340_00003 CVBR01000001 GenBank mRNA 2716 3507 . + 1 ID=ERS325340_00003.t01;Parent=ERS325340_00003 CVBR01000001 GenBank CDS 2716 3507 . + 1 ID=ERS325340_00003.p01;Parent=ERS325340_00003.t01;Dbxref=GI:804333228;Name=ERS325340_00003;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002041506.1;product=side tail fiber protein;protein_id=CQU31351.1;transl_table=11;translation=length.263 CVBR01000001 GenBank exon 2716 3507 . + 1 Parent=ERS325340_00003.t01 CVBR01000001 GenBank gene 4176 6542 . + 1 ID=ERS325340_00004;Name=sspH2;locus_tag=ERS325340_00004 CVBR01000001 GenBank mRNA 4176 6542 . + 1 ID=ERS325340_00004.t01;Parent=ERS325340_00004 CVBR01000001 GenBank CDS 4176 6542 . + 1 ID=ERS325340_00004.p01;Parent=ERS325340_00004.t01;Dbxref=GI:804333229;eC_number=6.3.2.-;Name=sspH2;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002244314.1;locus_tag=ERS325340_00004;product=secreted effector protein;protein_id=CQU31395.1;transl_table=11;translation=length.788 CVBR01000001 GenBank exon 4176 6542 . + 1 Parent=ERS325340_00004.t01 CVBR01000001 GenBank gene 7163 7239 . - 1 ID=ERS325340_00005;Name=ERS325340_00005 CVBR01000001 GenBank tRNA 7163 7239 . - 1 ID=ERS325340_00005.r01;Parent=ERS325340_00005;Name=ERS325340_00005;inference=COORDINATES: profile:Aragorn:1.2.36;product=tRNA-Pro CVBR01000001 GenBank exon 7163 7239 . - 1 Parent=ERS325340_00005.r01;Name=ERS325340_00005 ##FASTA >CVBR01000001 TAGAGCGCAGTATCCGGCTGGCGCAGGAGAAATAAGACCCTGACGGCCCGGTGGCGTGGC GCCACCGGGCCTGGCTTGTTACTGCATTCCGCGTGTTTGTAAAAATAGAATGGTCGCCGC GACGCGCGAGCGCACGTTTAGCTTGCGAAGTAGATTACGAATGTGCACCTTAACCGTCTG CTCAGAAATATTCAGTACTGACGCAATCTGTTTGTTAGAAAGCCCCTGCGCCAGCTCATG CAAGACATCTAACTCTCGTTCGGTCAGGATACTAAAGGGATCTTCCTGCGCGCCAAACCG TTCACGCTCACGCAGATATTCATTGACCCGATCGCTAAAGACTTTACCGCCGTTAGCGCC TTTGCGAATGGCCTCCAGCAGCACTTCCGGATCGCTATCTTTGAGCAGATAACCGTCGGC GCCGGCGTCGATCAGCGCGTAGATGTCGCTGGCGGAATCCGAGACGGTAAGAATAATAAT TTGCGCCGTCACACCATCCCGGCGTAGCGCGTTCAGGGTATCTAACCCGCTCAGACCTTT CATATTCAGATCCAGCAGGATCAGATCGGGCTCAATGCGATTCGCCAGATCGATCGCACT CGCCCCGTCACCCGCTTCGGCAACGACATAAAAAGCCGGGTCCAGTTCCAGTAATTGACG AATACCTCGCCGCATAAGTGGATGGTCGTCCACAATAAGCACCTGAAAAGGTGTTACTTC AGGCATGCTATATCTCCTGAGTTTTATTAGAATGATTATTGTTTTCAGCGCGGAAATCGT CCAGATTTGCCACATTGTCAAGCGCGTAAATTTTACCTTAATTAGTGCATGGGTAAGTAG TAAAACCTGTGACAGGCGAGTCATTAGCTGAACGATAGAAAGGATAAAACAACCTGTTGT GAGAGAAAACAGAATACTCCCTGAAGTTGAATACTGGTCTGGACGCTTTTTTCGGACAAT GTGACATAACAGAAGTGTGGCATATGTAGCTGCGCCCTTGCGTCCGTAAGTCCAGACTAT CTTTACTGGCAGGAAATTCCTTATTAAAAGTCATAGCGTCTAAAGATTTTCATTATTAAC AAATTATTTTAATTGAATTTATTTATGGTTTTATTAATGCCAATGAAATACATCTGAGCA GAACGAATAAACCGCGACATCTGTTAAATTAAATATTAAGTCAATAGCAGAGGTATTTTT ATGCGATAAAGAGATTCTGACGATATTCTTATCATAAATGAAAATGTGGTCAGGAATGAG CGTCATTCACTTATAACTTATCCTGGATGTGCCTGAACAACACTCGCGGCGTTTTGAGCA CCCGTTGGGGCGACTCAAGGGGAGAACGTAGTGTGGATGCTATATCAGCCGTTTCTGTGA GCGTAAGCGTGGCGTAGAAAATTTTAAATATGTTAGCCGGTTAAAAATAACTATTGACAT TGAAATGGTGGTGGAGTGTATATGAAGAGAATATTTATATATCTATTATTACCTTGTGCA TTCGCATGTTCTGCTAATGATAATGTTTTTTTGGCAAGGGCAACAAGCATCAGATCTCTT TTGCTGCGGGAGAAAGTATAAGAAGAGGAGGGGTTGAGCACTTATATACGGCTTTTCTGA CATACAGTGAACCCAGCGATTTTTTCTTTTTACAGGCAAGAAATAATCTGGAGTTAGGAG GATTTAAGGCTAAGGGTAGCGATGATTGCAGTAAACATTCTGGCAGCGTTCCCTGTAATA AATATAACCAGGGCGTATTGGGTATCTCGAAGGATGTGGCGCTGGTTCATTTCGCTGGTA TCTATACCGGTATTGGTCTGGGGGCTTATATAAAATCTAAGTCGCGAGATGATATGCGTG TCAATTCTGCATTTACCTTTGGAGAAAAAGCGTTTCTTGGCTGGAACTTTGGGGCTTTTT CTACAGAAGCTTATATCCGGCATTTCTCGAATGGATCACTTACGGATAAAAATTCAGGGC ATAATTTTGTAGGTGCTTCAATTAGTTATAATTTCTGAAGTTGAATAACAATTAGCGAGT TGCTGGCTGAAGGAGTAATTAATCACCGTACGTTGTCTACAAAACGTGTTGTGAATAGCC GATCGTTATCGACCCTATGGCGACAGGGAGGCTAATTGTTAGCGACAAAGGCGTGGTAGG CCGTTTACCTTACCAGAACGTTTTATTATTGCTGCGACAGATTGCTTACTCATTTACCTG CCACTGCAAACATTTTTTCCAGTATAGGGTGTAGATGCGCTTTTTCTGTTTTAGTACAAA CATGGTTTACGTTAGTTGCCTGCATTGACTTTACTGTGACCACTGCACAGGAAAGATGTC CAATCAGTTCATGCAAAATCAGTTCATGCAAAATAACGTCTCTGGCATCAGCTAACTTTT TAATTGTAGGCATAAAAAAACCAGCCCTGACAGGCTGGTTTTCAAGGGGAATTTTGGTCG GCAGCTTCATCCGCAGCATCTGCGGAGAGCAGCGCAGGTACGGCGACCACAAAAGCCGGG GAGGCATCAGCCAGCGCGGCGTCGGCTGACACAGCCAGAACGGCGGCAGCCGCCTCGTCA TCAGCATCGTAGGCATCCACCCACGCCGCCGCATCTGATACCAGCGCATCACTGGCAGCG CAAAGCAGAGCTGCAGCCGGAGAATCGGCAACCAGAGCCGAAGAGGCCGCGAAACGGGCC GAGGATATCGCAGACGTGATTTCCCTGGAAGATGCAAGCCTGACGAAAAAAGGTATCGTT AAATTAAGCAGTGCCACGGACAGTGACAGCGAAGCGCTGGCGGCCACACCAAAGGCGGTA AAAACCGTTATGGGTGAGGTACGGACCAAAGCGCCGCTGGACAGCCCGGCATTCACTGGA ACGCCGACCACACCGACGCCGCCAGGCGATGCTAAAGGGCTTCAGACAACAAACGCGGAG TTTGTCCGCAAACTGATTGCCGCGCTGGTTGGTTCCGTACTGGAGCCACTGGACACCCTG CAGGAACTGGCTGACGCGTTGGGAAATGATCCGAACTTTGCCACCACGGTACTGAATAAA CTGGCGGGCAAGCAGCCGCTGGACGAAACCCTGACGGCGCTGTCAGGAAAAAGCGTTGAC GGTCTTATCGAATACGTTGGTTTGCGAGAAACCATAAGTCGTGCCGCCGATGCATTACAA AAATCACAGAATGGCGGCGATATTCCGGACAAGGATTTGTTTGTGCGTCGTATCGGTGCC GCGCGAGCGTTTGATGGCGCAGTTATTATCGGCTGTGATGATAATCCGTGGACGACGGCG GAGTTTATCGTCTGGCTGGAGTCTCAGGGCGCATTCAATCACCCTTACTGGATGTGTCGT GGCTCCTGGTCTTACGCTTATAACAAAATCATCACGGATACTGGCTGCGGTAATATCTGT CTCGCTGGCGCAGTGATTGAGGTAATGGGAGTGCGTGGCGCGATGACTATTCGGGTGACA ACGTCCCATTCAGTATCTGGTTGGTGATACGTGGGTGACAGCCCCAAGTGTATAAGAAGG AATAATTATGACAGCGGAAAAAAAATAAAAAGAACAAACAGTTTTTAAATATTAAAAATT TCATTCCGTATGCACCGGAACCAGATGACACATTATTCGCCGATGCGGCGTATCTTAAAT CAGAGGATGGTCAGGACTGGTATGGGTGCCAGCAATTATTTTCAGCAGACACGCTGAAAA TTACCTACGACGATAACGATGTTATTACGTGTATTACGCGTGATGTTTCCGGGCTGTGGC CTGCTGGCCAGAGCGTTGCAGAGTTGCCTGATACGGATGAAAACCGTCGCGCTGATATTC ATGCTGCTGGCAGTTTAAAGACGGTAAAGTCGTTCAAAGGGTTTATTCGCCGGAAGAGCT GCGCAGGCAGGCAGAATCGAAAATTGAACGCCCGGGCGTTGATACCGGATGATCTGGTCA TCGTGGAAAGCGACCCTGAAAAAATCGACACTTTAGCTGTAAAATGACAGTCCCGCCATC CGGTCATCATAACGGATTTTTCTTCTGCACCTTCTGAAGCCCGCCATGTCAGGACGACCA TGAATCCGCCGATAACCTTATTGTGAAATTAAGACCAGGAAGAGATGATGTCTGCCGGAC AGATACTATATGTAAATTTATAAAGGTTTTTTGTTATGCCCTTTCATATTGGAAGCGGAT GTCTTCCCGCCACCATCAGTAATCGCCGCATTTATCGTATTGCCTGGTCTGATACCCCCC CTGAAATGAGTTCCTGGGAAAAAATGAAGGAATTTTTTTGCTCAACGCACCAGACTGAAG CGCTGGAGTGCATCTGGACGATTTGTCACCCGCCGGCCGGAACGACGCGGGAGGATGTGA TCAACAGATTTGAACTGCTCAGGACGCTCGCGTATGCCGGATGGGAGGAAAGCATTCATT CCGGCCAGCACGGGGAAAATTACTTCTGTATTCTGGATGAAGACAGTCAGGAGATATTGT CAGTCACCCTTGATGATGCCGGGAACTATACCGTAAATTGCCAGGGGTACAGTGAAACAC ATCGCCTCACCCTGGACACAGCACAGGGTGAGGAGGGCACAGGACACGCGGAAGGGGCAT CCGGGACATTCAGGACATCCTTCCTCCCTGCCACAACGGCTCCACAGACGCCAGCAGAGT ATGATGCTGTCTGGTCAGCGTGGAGAAGGGCTGCACCCGCAGAAGAGTCACGCGGCCGTG CAGCAGCGGTACAGAAAATGCGTGCCTGCCTGAATAATGGCAATGCAGTGCTTAACGTGG GAGAATCAGGTCTTACCACCTTGCCAGACTGTTTACCCGCGCATATTACCACACTGGTTA TTCCTGATAATAATCTGACCAGCCTGCCGGCGCTGCCGCCAGAACTGCGGACGCTGGAGG TCTCTGGTAACCAGCTGACTAGCCTGCCGGTGCTGCCGCCAGGACTACTGGAACTGTCGA TCTTTAGTAACCCGCTGACCCACCTGCCGGCGCTGCCGTCAGGACTATGTAAGCTGTGGA TCTTTGGTAATCAACTGACCAGCCTGCCGGTGTTGCCGCCAGGGCTACAGGAGCTGTCGG TATCTGATAACCAACTGGCCAGCCTGCCGGCGCTGCCGTCAGAATTATGTAAGCTGTGGG CCTATAATAACCAGCTGACCAGCCTGCCGACGTTGCCGTCAGGGCTACAGGAGCTGTCGG TATCTGATAACCAACTGGCCAGCTTGCCGACGCTGCCGTCAGAATTATATAAGCTGTGGG CCTATAATAATCGGCTGACCAGCCTGCCGGCGTTGCCGTCAGGACTGAAGGAGCTGATTG TATCTGGTAACCGGCTGACCAGTCTGCCGGTGCTGCCGTCAGAACTGAAGGAGCTGATGG TATCTGGTAACCGGCTGACCAGCCTGCCGATGCTGCCGTCAGGACTACTGTCGCTGTCGG TCTATCGTAACCAGCTGACCCGCCTGCCGGAAAGTCTCATTCATCTGTCTTCAGAGACAA CCGTAAATCTGGAAGGGAACCCACTGTCTGAACGTACTTTGCAGGCGCTGCGGGAGATCA CCAGCGCGCCTGGCTATTCAGGCCCCATAATACGATTCGATATGGCGGGAGCCTCCGCCC CCCGGGAAACTCGGGCACTGCACCTGGCGGCCGCTGACTGGCTGGTGCCTGCCCGGGAGG GGGAACCGGCTCCTGCAGACAGATGGCATATGTTCGGACAGGAAGATAACGCCGACGCCT TCAGCCTCTTCCTGGACAGACTGAGTGAGACGGAAAACTTCATAAAGGACGCGGGGTTTA AGGCACAGATATCGTCCTGGCTGGCACAACTGGCTGAAGATGAGGCGTTGAGAGCAAACA CCTTTGCTATGGCAACAGAGGCAACCTCAAGCTGCGAGGACCGGGTCACATTTTTTTTGC ACCAGATGAAGAACGTACAGCTGGTACATAATGCAGAAAAAGGGCAATACGATAACGATC TCGCGGCGCTGGTTGCCACGGGGCGTGAGATGTTCCGTCTGGGAAAACTGGAACAGATTG CCCGGGAAAAGGTCAGAACGCTGGCTCTCGTTGATGAAATTGAGGTCTGGCTGGCGTATC AGAATAAGCTGAAGAAATCACTCGGGCTGACCAGCGTGACGTCAGAAATGCGTTTCTTTG ACGTATCCGGCGTGACGGTTACAGACCTTCAGGACGCGGAGCTTCAGGTGAAAGCCGCTG AAAAAAGCGAGTTCAGGGAGTGGATACTGCAGTGGGGGCCGTTACACAGAGTGCTGGAGC GCAAAGCGCCGAAACGCGTTAACGCGCTTCGTGAAAAGCAAATATCGGATTATGAGGAAA CGTACCGGATGCTGTCTGACACAGAGCTGAGACCGTCTGGGCTGGTCGGTAATACCGATG CAGAGCGCACTATCGGAGCAAGAGCGATGGAGAGCGCGAAAAAGACATTTTTGGATGGCC TGCGACCTCTTGTGGAGGAGATGCTGGGGAGCTATCTGAACGTTCAGTGGCGTCGTAACT GATGCACCAGGTGAATGAGGTGCGGTGCGACAAAGATATTCCCGGACGAACAACATCAGA CAGTACGGATGATGTACAGGTGAAATAGGGGAGACTTCTTCAGTCAGGGCGCGGCGCAAC TTTTTCGATGATAACGCGCCGCGCGCCGGTAGCGAGAAGCCGATGGAAGTACTGGATCAC CTGAATGCAAAGAAGGGCAGGGGAAAGCTGTACTTTGCCGGGGAGGGTATCCAGCAACAG TGGGCTATGAAGAGAAACATACTGTCATCCCGATATACCACCCGCTATGAAGACCTGCTT CAGGTTAAGTGACAGGTTTACCCTGATTTTCAAATTTCTGATGTGATGGTGTGCCGCAGC CACATTGTATGCAAGAACGGGCTGCGGCAAACTGGCGATCGTTCGATAGTGCGTGTATTG AATAGTTACCAGTCGTGGCGGATTCTACTGGTTAAGGATGACTAATCAATGTATTTAAGT CATCTGTTCAACTTTTCGCGTTGGAGGGAGCTTGAAGTCAATTTGCAGTGACCTTCGATA GCTATTTCACCATCATTTCACCATTTGCAAATTGGATATATAAAAAAACCAGCCCTGGCA GGCTGGCTTTTAAGGGGAATTTTGGTCGGCACGAGAGGATTTGAACCTCCGACCCCCGAC ACCCCATGACGGTGCGCTACCAGGCTGCGCTACGTGCCGACTTGTGGGTGCTAATACTAC CTCTTTCCAACGCGAATGCAAGGGGAAACGGTGCTAACTGATTTATAATTAATCAGTTAG CGATAAAACGTTTCTCTTCTGTTAGCACTTGCAGCAGCAGACTGAGCTGCGGCTTCTGAT CTTTGATCTTCTCGCCGTGTAAGTCATAGGTCTGATAATGACCGTTATTATTGAGCACCA GGGTCATTTGCGGCGTCGTGATTGCCAGCGTACTGCCGTCTGCCGCCGTTACCCAGTTAT GACGACGTGGAACGGTAAAGATGTCCTGGCCCTGTGAATATTCGTTCGCTGGCGTGCTGA CATGTAACAGGCGTTGCATCAACGTGGTCATCACATCGGTATGATCGGTAAGCACATTAA TACGCTGCGCAGGCGTCCCCGGCCAGTGGATCACCAGCGGTACTTGCAGATGACCTTGCG ACCAGTCGAAGCGATTTTCTTCCGGCGTCAACGGTATGCCGCGTCCTGCGGTAATGATCA CGACAGTATTGTCGAATTTACCGGCCTCTCGCAGCGCGTTCAGAACCCGATTGATTTGCG CATCCACGTCGCTGGCGGCACTGGCGTAACGCTTAACAAAATTTTTCTGGTTACTGTCAT CAATGTTAGTACCGTTAAACGATATCCATGAGAACCAGCGGTTATCTTCCTGTGCGTAGC GCCCAAGCCAGTCTATCCACTGGCTGGCCGTTTGCGCATCAGACTGCGTTTGCGCTGCCG GCATCGAGAAATCGGACAGTAATGCCTGACGATAAAGCGGGCTGGCGAAGCCATCCGAAG AAAACAGTCCCAGTTGGTAGCCTTGCTGATTCAACGCGGTAATGAGCGCCGCAGGCGTTC TGGTGGATAACACGCCATCCATATAGCCTGGCGATATGCCATAGAACAGGCCGAAAATAC CGTTATCAGTGGTATTCCCTGAACTCATATGACGGGTGAAGTCGATGTTTTGCTCGGCAA ATGTAGCCAGCTCCGGCATCTGCTTCTCAAAGCGAGAATAGTTCAGGCCGTCTACGGTAA TGAGCAGCACATTCTGACCGGTGCCCATATCGCGATAGTGCAAATTGCTGAGCGGGTACT GAACGGAGACCGCTTCCGGATTGCCTTGCTCTACCAGACGGCGCTGATATTCCTGCGCAT CCAGCAGACCGTGTTTTTCAAGAAAACGTCGCGCCGTCATCGGATAAGAGAGCGGCAGGT TTGCCCGCTGCATGGTAATCGGCCGGTAAAAATTAGCGTCTGCCCAGATGTAGATAAGAT GCGATGCGATAAAGGAGACGAAAAAGAATGCCGCAAGCGGCCTTGCGAAATGGCGGCGGC GCGTGAGACTGCGCAGCTTTTGCCAACTCCATGTCGCAAATAGCATCTCAATCAATAAGA TAACTGGCACGCTAATAAACATAAGCTGCCAGTCGCGCGCCATTTCGTTCTGGTCAGGGT TGATGACCAGTTCCCAGACAATGGGGTTAAGATGCAGGTGAAAACGGGTAAAGACTTCGC TGTCGATAAGCAACAACGTCATACCCGCGGTCGCCAGAATGGCTGATAAAAACCGCATCA GCCGCTGGGACATCACGATAAACGTGAGCGGAAAAAGAATAAGCAAATAGGTGGCGAACA CCAGAAAGCTAAAGTGCCCGACAATGCTCAGGTAGGAGTATATGCGACCCGCAAGCGTTG TCGGCCAGTCGGCGACAAACAGGTAACGGCTGCCGAGCAACGTAGCCAACAGTATATTGA ACAGAGCGAACCAGTGCCCCCAGCTAACCATCTGGGAGACTTTTTCACGGTAGCGCTGAC GATGAGTTACCATACCTGTCGCTTGTTTCTCCGGAGTCGGCTTTTTAGTGCGCGTTGTCT TCGCTAATCGAAGACTGCAAGGCGCGGGCAAAAGAGTTCGCAATCGCCTGGCGTTGAGCC GGCGCCACGCTGGTGTTGATAAGGTTGGTGACCATATTTCCCAGTACCATCAGGGAAAGA TCGGTCGGCGCCTTATGTTTTTCCAGTACACTGAGCAGTTCGCTCAGCAGTTGTTCAACA TGTTCATCACTATAGCGGGAGAGTTGTGGCATAAATCAAAATCTGTTTGTTCATGAAAGG GCAACATATTACCGTAGCAACAGTTTTTTTTCTGCATTTTTATCCCCTAAATCATTCGCG TTACGGATAACGCCTGAAATGACAGGGCGATTGCTTGCGTCTTCCGGCAGGCGGTGGTTG AATACCGCCCGGTCTTAAAGGAGAGTTTATCATGAGTCTGGATATCAACCAGATTGCCCT GCACCAGCTTATCAAGCGCGATGAGCAAAATCTTGAGCTGGTCTTGCGCGATTCATTGCT GGAGCCGACAACCACCGTTGTCGAGATGGTGGCTGAACTGCATCGGGTCTATAGCGCCAA GAATAAGGCGTATGGCCTGTTTAATGAAGAGAGTGAACTGGCGCAAGCGCTGCGGTTGCA ACGTCAGGGGGAAGAAGATTTTCTTGCCTTTAGCCGGGCGGCGACCGGACGCCTGCGTGA CGAACTGGCGAAATATCCCTTTGCGGACGGCGGCATTGTATTGTTCTGCCATTATCGTTA CCTGGCGGTGGAGTATCTGCTGGTTACGGTACTGAACAACCTGAGCAGTATGCGGGTCAA TGAAAATCTGGACATTAACCCGACGCATTATCTTGATATCAACCATGCGGATATCGTGGC GCGTATCGATCTTACCGAGTGGGAAACTAATCCGCAATCGACCCGCTACCTGACGTTCCT GAAAGGTCGGGTAGGGCGCAAGGTCGCTGACTTCTTTATGGATTTCCTCGGCGCCAGCGA AGGGTTGAACGCCAAAGCGCAGAATCGCGGCCTGTTGCAGGCAGTGGATGATTTCACCGC AGAAGCGCAGTTGGATAAAGCAGAACGTCAGAACGTGCGTCAGCAGGTGTACAGCTACTG CAACGAGCAGTTACAAGCCGGGGAAGAGATTGAGCTGGAATCGCTGTCTAAAGAGCTTTC CGGCGTCAGTGAAGTCAGCTTCAGCGAATTTACCGCCGAAAAAGGCTATGAGCTGGAAGA GAGCTTCCCGGCAGATCGCAGTACGCTACGCCAGTTAACCAAATATGCCGGCAGCGGCGG CGGGTTAACGATTAACTTTGATGCGATGCTACTGGGCGAGCGGATTTTCTGGGACCCGGC GACCGATACCCTGACTATCAAAGGGACGCCGCCGAATTTGCGCGATCAGTTGCAGCGACG CACGTCGGGCGGGAAATAAAGGCATACGACATAAAAGGACGCCGTAGTGAGTAAAGGAAT ACGTCAGAGGCCGCCTGTTAATTTCAGTTTATTTCGGCAGGTTTTGTATGCGCACATTGT CGCATTTTTGATGATGTTGATGCTCGGCATGGTGTTCACCGTTCTCTCGTTGGTACTGTT TTATACTTATGGCGCCAACTGGTTACTGAGCTTGTTCATATGCCCGCTGTTCTTGTTAAG TGGTTTATTCATTACTGGATTTGCTTTTAAATCAACCTGGTCCAGCATACGTTACTATTA CGACAAGGGGCAGTTGAAACGGTATGGACTCAATCTTGATGCAACTTTGACGCATAAAGA GAAGGTGGAAATACGCATCGATAATGCAAAGCGTCAAGTGCGTGTAGATGAACTGGAACT CCATGTCTTATTTGATTTTCAGTTTGATAGCAAGACATGGAGCTGCGGCGACTTACTGAC CAATGAAAAGGTATTTGATGCGTTGAATGATGGGCAAACGATACCAATACGAATTTTGCC ATGGAAACCGGAAAGTGCCAGCGTTCGTCAACGGGCATTATTCAATCGGCTTAAAGGTAT GAATACCGCGGCGGAAACTACAGATCCTCGATTAGGGGAGGCGCTAATTGAATGTGGCGA GGTGTAAGAAAGCAGAAAAGCAAAGTGGGTTCTCGTTGCTCTGCATGTCGTCAAATTCAA TTAAACGCATAAAAAAACCCCGCCGGGGCGGGGTTTTTCTTCAACTTCCAGGCGATTACG CGCGAACGAAGTCGATGTGAGTCAGCTTCGGTTTGTAAGCGTGACGCTGTACAGCCTGAG CTTTAACTTTTACTTCTTTACCGTCAACAACGAGGGTCAGAACTTCGCTGTAGAATTCAG CTTTAGCTTGCATGTTCATCACCTGGTCGTGGTCCAGTTCGATAGCAATCGGGGCTTCAG AACCGCCGTAGATGATTGCCGGGAACTTGTTAGCGGCGCGCAGGCGGCGGCTCGCACCCT TACCCTGCTCTTTACGTACTTCTGCGTTGATAGTAAACATTTAAATCTCTCTTTAATAAT TCCTGCTACAGGCGACCCAGCAACAGGTAAGTGATCTGCTTTGCGTATGCAAAGGCGGGC GGGATTCTATACTCAAATCGCCGTTACATCAATGAAAAGTACAATTAACCACGTAATTCG TGCGCCCGGCGGAAGCGGCCTTCATAGTCGAACACTTTTTCACGCACCTGCCAGTACTGG CCTTTCATCCGCGCGACCACAAAATCGGGATGCCGCAACAGCGCCTGCTGCGCGACAATA TCCGCCGCCGTGATCCAGCGTAAAGGAACGCCGGGCGTGCGCGTATGCGGGCGAATAAAT AGCTGTTCGAAAGCGGTACGCTGGGCGGGCGTGTGCAAGCGGAAGCGCTCACTGACATCC GCGCCGTCCTCGTCATAGTAAGTGATTTTCAGCCATTCGCCTTTCTCATCCTGCCCATGC TGCATCGTCATTCCGCTACAGCGCAGGACTAACGCATCCTTGAGCCTGAGCGCCGCTTTT AACATATCGTCCGGGTCGACCAGAATGGCGTCACATTCCCGGCAGCGTCGGGCGGCAATA TCGTTTTCGGCATTACACTGCGGGCAGTTTTTGAAGCGAAAGCGAAAATCGCACTGCTCG CGATGGCCGTCGTCATCCTCAAACCAGCCCTGGCAGCGACGGCCAAAGTGTTCAATCAGC GTGCCGTCGGCAGTGGTTTTCCCCCAGAAGGTGTTGGCAAAGCCGCAGGCCGGGCAAAAT ACCTGGACAGGGACGTTATCGCTTTTTCCCTTCGGGCTACCGACCTCCGGGGCATACAGG TCGTGCGGGTTGCCTGCGTAATCAAGAATCAGGCAATCGGTCTTTCCCGGCGCAAGGCGC AGACCACGCCCGACAATTTGTTGGTAAAGACTAACTGACTCCGTGGGACGTAGAATCGCG ATGAGATCAACGTGTGGGGCGTCAAAGCCGGTGGTCAGTACCGAGACGTTAACCAGATAG CGAAAACGCTGCGCCTTGAAATTATCAATCAGCGCGTCGCGCTCGGGCCCTGGCGTATCG CCGGTAATCAGCGCCGCGTCGTCCGCCGGAAGCAGACCGACAATCTCTTTCGCATGTTCG ACCGTGGCGGCGAAAATCATCACGCCTTTGCGCGTTTGCGCAAATTCCATAATCTGGCTG ATGATGTGCGGCGTAATCCGCTGCTGCTTTTTCAGCTCGCGGTTCAGGTCGGCTTCGCTG AACAGCCCATTGCTTTGGGCCTGCAGGCGGCTGAAATCGTATTGGACCACTGGCATATCA AGCCGCTCAGGCGGCGTCAGATAGCCGTGTTTAATCATATAGCGCAGCGGCAGTTCATAA ATACAGTCGCGAAACAGAGCGTTGTCGTTGCCGCGCACCATACCGTGATAATGAAATTGA TAAATCCAGCCTTTTCCGAGGCGAAAAGGCGTGGCGGTGAGTCCAAGCAGACGTAAGTGA GGATTAACTTTACTCAGGTGAGTGAGGATTTGCTGATACTGACTGTCTTCATCGTCACCG ATGCGGTGGCATTCATCGACAATCAACAGCGAAAACTCCTCCTGGAAGGCGTCAAGATTA CGCGCCACCGACTGTACGCTGCCGAACACGACTTTGCCCTGACTCTCTTTACGTTTGAGT CCGGCGGCGAAAATATCCGCTTCCAGCCCCAGCGCGCAATATTTGGCGTGGTTCTGCGCG ACCAGCTCTTTCACATGCGCCAGCACCAGTACCCGTCCGCGGGCGACGCGCGCCAGTTCG GCGATCACCAGGCTTTTACCTGCGCCGGTCGGCAGAACAATCACGGCGGGCGTACGGTGG CGGCGAAAGTGGCTGAGCGTGGCGTCTACGGCTTCTTGCTGGTAGGGGCGGAGTGTAAAA ATCATGGTCTCACTACGTTAAACGGTTCCGGGAATAGTATGCCATGAATCATTTCCCTTG AGGGATATAGTTAGCCCGCTATACTGAGCGGATAGCAATTCCCTTTTTTCGGGTAGAATG CCCGATTTCCGTATTATTACAGGCTAAATCACACACATGCGACTTGATAAATTTATCGCT CAGCAGCTTGGCGTCAGCCGCGCTATTGCCGGGCGTGAAATTCGTGGTAACCGCGTTACC GTCGATGGCGACATCATTAAAAATGCGGCCTTCAAACTGCTCCCGGAACATGCGGTTGCG TATGACGGCAATCCCTTAGCGCAGCAACACGGGCCACGCTATTTTATGCTTAACAAGCCG CAGGGATACGTTTGTTCAACCGATGATCCCGATCATCCAACGGTGCTGTATTTCCTGGAT GAGCCGGTGGCGTATAAGCTGCATGCCGCAGGACGTCTGGATATCGATACTACCGGTCTG GTGTTAATGACAGATGACGGTCAGTGGTCGCACCGCATTACGTCGCCGCGCCATCACTGT GAAAAAACCTATCTGGTGACCCTGGAGTCGCCGGTGGCCGACGATACGGCAGCGCAATTT GCGAAAGGCGTGCAGTTGCATAATGAAAAAGATCTCACTAAACCCGCTACGCTGGAGGTG ATAACACCTGTGCAGGTCCGTCTGACCATCAGCGAAGGCCGTTATCATCAGGTGAAGCGG ATGTTTGCCGCAGTAGGCAATCGCGTTGTGGAACTGCACCGCGAACGGATTGGCGCCATT ACGCTGGATGAGAATCTGGCTCCCGGCGAGTACCGCCCGTTGACTGAAGAAGAAATCGCC AGCGTCGGCTAACTATCTCGTTAAATTCAGGAGTTCGATGTGACCACCCGGCAGCACTCT TCCTTTGCCATTGTCTTTATTCTTGGCCTGTTGGCCATGTTAATGCCGCTGTCGATTGAT ATGTATCTTCCAGCGCTGCCGGTGATTTCTGCGCAATTCGGCGTGCCTGCCGGTAGCGCG CAGATGACGCTCAGCACCTATATTCTGGGGTTTGCGCTGGGTCAGCTTATCTATGGACCG ATGGCGGATAGCCTCGGGCGTAAGCCGGTCATCCTGGGCGGGACGCTGGTATTTGCCGCT GCGGCGGTCGCCTGTGCGTTGGCGCAGACTATCGATCAACTGATCGTGATGCGTTTCTTT CACGGTTTGGTGGCTGCGGCGGCAAGCGTCGTCATCAATGCGCTGATGCGGGATATTTAT CCAAAGGAAGAGTTTTCGCGCATGATGTCATTTGTCATGCTGGTCACTACGATAGCGCCG TTAATGGCGCCCATTGTTGGCGGCTGGGTGTTGGTATGGTTAAGCTGGCACTATATCTTC TGGATACTGGCTATTGCGGCGATTCTGGCGTCAGTCATGATCTTTGCTTTGATTAAAGAG ACGCTGCCCGTTGAGCGGCGTCAGCCTTTTCATATTCGTACCACAATAGGTAACTTTGCC GCGTTGTTTCGCCACAAACGCGTACTGAGCTATATGCTGGCGAGCGGGTTCAGTTTTGCC GGTATGTTCTCTTTTTTGAGCGCGGGGCCGTTTGTCTATATCGAAATTAATCATGTTCCG CCGCAGGATTTCGGCTACTACTTCGCGTTGAACATCGTATTTCTGTTTGTGATGACGATT ATCAACAGCCGTTTTGTCAGACGGGTAGGGGCGCTAAACATGTTTCGGGCCGGGCTATGG ATTCAGTTTGCGATGGCGGTGTGGATGGTTTTCAGCGCGCTGATGGGCATTGGATTCTGG GCGCTGGTGGTTGGCGTTGCGGCGTTTGTCGGCTGTGTGTCGATGGTTTCGTCCAATGCG ATGGCGGTCATTTTGGATGAGTTTCCGCATATGGCCGGAACGGCGTCTTCGTTGGCGGGC ACTTTCCGCTTTGGTATTGGCGCTATCGTCGGCGCGTTGCTGTCGCTGGCTACCTTTAAC AGTGCGTGGCCGATGATCTGGTCGATTGCGCTTTGCGCCGCCTGTTCCATTCTGTTTTAT Roary-3.8.0/t/data/genbank_gbff/genbank2.gff.proteome.faa.expected000066400000000000000000000025131304207556500247250ustar00rootroot00000000000000>ERS325340_00001.p01 MPEVTPFQVLIVDDHPLMRRGIRQLLELDPAFYVVAEAGDGASAIDLANRIEPDLILLDL NMKGLSGLDTLNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAI RKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNI SEQTVKVHIRNLLRKLNVRSRVAATILFLQTRGMQ* >ERS325340_00003.p01 VISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRTKAPLDSPAFTGTPTTP TPPGDAKGLQTTNAEFVRKLIAALVGSVLEPLDTLQELADALGNDPNFATTVLNKLAGKQ PLDETLTALSGKSVDGLIEYVGLRETISRAADALQKSQNGGDIPDKDLFVRRIGAARAFD GAVIIGCDDNPWTTAEFIVWLESQGAFNHPYWMCRGSWSYAYNKIITDTGCGNICLAGAV IEVMGVRGAMTIRVTTSHSVSGW* >ERS325340_00004.p01 MPFHIGSGCLPATISNRRIYRIAWSDTPPEMSSWEKMKEFFCSTHQTEALECIWTICHPP AGTTREDVINRFELLRTLAYAGWEESIHSGQHGENYFCILDEDSQEILSVTLDDAGNYTV NCQGYSETHRLTLDTAQGEEGTGHAEGASGTFRTSFLPATTAPQTPAEYDAVWSAWRRAA PAEESRGRAAAVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE NFIKDAGFKAQISSWLAQLAEDEALRANTFAMATEATSSCEDRVTFFLHQMKNVQLVHNA EKGQYDNDLAALVATGREMFRLGKLEQIAREKVRTLALVDEIEVWLAYQNKLKKSLGLTS VTSEMRFFDVSGVTVTDLQDAELQVKAAEKSEFREWILQWGPLHRVLERKAPKRVNALRE KQISDYEETYRMLSDTELRPSGLVGNTDAERTIGARAMESAKKTFLDGLRPLVEEMLGSY LNVQWRRN* Roary-3.8.0/t/data/genbank_gbff/genbank3.gff000066400000000000000000000443511304207556500205550ustar00rootroot00000000000000##gff-version 3 ##sequence-region CVBT01000001 1 489157 # conversion-by bp_genbank2gff3.pl # organism Salmonella enterica subsp. enterica serovar Typhi # Note Salmonella enterica subsp. enterica serovar Typhi genome assembly 10426_1#50, scaffold ERS325326SCcontig000001, whole genome shotgun sequence. # date 02-APR-2015 CVBT01000001 GenBank region 1 489157 . + 1 ID=CVBT01000001;Dbxref=BioProject:PRJEB3215,taxon:90370;Name=CVBT01000001;Note=Salmonella enterica subsp. enterica serovar Typhi genome assembly 10426_1#50%2C scaffold ERS325326SCcontig000001%2C whole genome shotgun sequence.;collection_date=1997;country=Viet Nam;date=02-APR-2015;isolation_source=Not known;mol_type=genomic DNA;organism=Salmonella enterica subsp. enterica serovar Typhi;serovar=H58;strain=ipt76 CVBT01000001 GenBank gene 83 730 . - 1 ID=ERS325326_00001;Name=narL_1;locus_tag=ERS325326_00001 CVBT01000001 GenBank mRNA 83 730 . - 1 ID=ERS325326_00001.t01;Parent=ERS325326_00001 CVBT01000001 GenBank CDS 83 730 . - 1 ID=ERS325326_00001.p01;Parent=ERS325326_00001.t01;Dbxref=GI:804342840;Name=narL_1;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002147204.1;locus_tag=ERS325326_00001;product=transcriptional regulator NarP;protein_id=CQU32483.1;transl_table=11;translation=length.215 CVBT01000001 GenBank exon 83 730 . - 1 Parent=ERS325326_00001.t01 CVBT01000001 GenBank gene 2720 3511 . + 1 ID=ERS325326_00003;Name=ERS325326_00003 CVBT01000001 GenBank mRNA 2720 3511 . + 1 ID=ERS325326_00003.t01;Parent=ERS325326_00003 CVBT01000001 GenBank CDS 2720 3511 . + 1 ID=ERS325326_00003.p01;Parent=ERS325326_00003.t01;Dbxref=GI:804342841;Name=ERS325326_00003;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002041506.1;product=side tail fiber protein;protein_id=CQU32522.1;transl_table=11;translation=length.263 CVBT01000001 GenBank exon 2720 3511 . + 1 Parent=ERS325326_00003.t01 CVBT01000001 GenBank gene 4180 6546 . + 1 ID=ERS325326_00004;Name=sspH2;locus_tag=ERS325326_00004 CVBT01000001 GenBank mRNA 4180 6546 . + 1 ID=ERS325326_00004.t01;Parent=ERS325326_00004 CVBT01000001 GenBank CDS 4180 6546 . + 1 ID=ERS325326_00004.p01;Parent=ERS325326_00004.t01;Dbxref=GI:804342842;eC_number=6.3.2.-;Name=sspH2;codon_start=1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002244314.1;locus_tag=ERS325326_00004;product=secreted effector protein;protein_id=CQU32561.1;transl_table=11;translation=length.788 CVBT01000001 GenBank exon 4180 6546 . + 1 Parent=ERS325326_00004.t01 CVBT01000001 GenBank gene 7167 7243 . - 1 ID=ERS325326_00005;Name=ERS325326_00005 CVBT01000001 GenBank tRNA 7167 7243 . - 1 ID=ERS325326_00005.r01;Parent=ERS325326_00005;Name=ERS325326_00005;inference=COORDINATES: profile:Aragorn:1.2.36;product=tRNA-Pro CVBT01000001 GenBank exon 7167 7243 . - 1 Parent=ERS325326_00005.r01;Name=ERS325326_00005 ##FASTA >CVBT01000001 GTGATAGAGCGCAGTATCCGGCTGGCGCAGGAGAAATAAGACCCTGACGGCCCGGTGGCG TGGCGCCACCGGGCCTGGCTTGTTACTGCATTCCGCGTGTTTGTAAAAATAGAATGGTCG CCGCGACGCGCGAGCGCACGTTTAGCTTGCGAAGTAGATTACGAATGTGCACCTTAACCG TCTGCTCAGAAATATTCAGTACTGACGCAATCTGTTTGTTAGAAAGCCCCTGCGCCAGCT CATGCAAGACATCTAACTCTCGTTCGGTCAGGATACTAAAGGGATCTTCCTGCGCGCCAA ACCGTTCACGCTCACGCAGATATTCATTGACCCGATCGCTAAAGACTTTACCGCCGTTAG CGCCTTTGCGAATGGCCTCCAGCAGCACTTCCGGATCGCTATCTTTGAGCAGATAACCGT CGGCGCCGGCGTCGATCAGCGCGTAGATGTCGCTGGCGGAATCCGAGACGGTAAGAATAA TAATTTGCGCCGTCACACCATCCCGGCGTAGCGCGTTCAGGGTATCTAACCCGCTCAGAC CTTTCATATTCAGATCCAGCAGGATCAGATCGGGCTCAATGCGATTCGCCAGATCGATCG CACTCGCCCCGTCACCCGCTTCGGCAACGACATAAAAAGCCGGGTCCAGTTCCAGTAATT GACGAATACCTCGCCGCATAAGTGGATGGTCGTCCACAATAAGCACCTGAAAAGGTGTTA CTTCAGGCATGCTATATCTCCTGAGTTTTATTAGAATGATTATTGTTTTCAGCGCGGAAA TCGTCCAGATTTGCCACATTGTCAAGCGCGTAAATTTTACCTTAATTAGTGCATGGGTAA GTAGTAAAACCTGTGACAGGCGAGTCATTAGCTGAACGATAGAAAGGATAAAACAACCTG TTGTGAGAGAAAACAGAATACTCCCTGAAGTTGAATACTGGTCTGGACGCTTTTTTCGGA CAATGTGACATAACAGAAGTGTGGCATATGTAGCTGCGCCCTTGCGTCCGTAAGTCCAGA CTATCTTTACTGGCAGGAAATTCCTTATTAAAAGTCATAGCGTCTAAAGATTTTCATTAT TAACAAATTATTTTAATTGAATTTATTTATGGTTTTATTAATGCCAATGAAATACATCTG AGCAGAACGAATAAACCGCGACATCTGTTAAATTAAATATTAAGTCAATAGCAGAGGTAT TTTTATGCGATAAAGAGATTCTGACGATATTCTTATCATAAATGAAAATGTGGTCAGGAA TGAGCGTCATTCACTTATAACTTATCCTGGATGTGCCTGAACAACACTCGCGGCGTTTTG AGCACCCGTTGGGGCGACTCAAGGGGAGAACGTAGTGTGGATGCTATATCAGCCGTTTCT GTGAGCGTAAGCGTGGCGTAGAAAATTTTAAATATGTTAGCCGGTTAAAAATAACTATTG ACATTGAAATGGTGGTGGAGTGTATATGAAGAGAATATTTATATATCTATTATTACCTTG TGCATTCGCATGTTCTGCTAATGATAATGTTTTTTTGGCAAGGGCAACAAGCATCAGATC TCTTTTGCTGCGGGAGAAAGTATAAGAAGAGGAGGGGTTGAGCACTTATATACGGCTTTT CTGACATACAGTGAACCCAGCGATTTTTTCTTTTTACAGGCAAGAAATAATCTGGAGTTA GGAGGATTTAAGGCTAAGGGTAGCGATGATTGCAGTAAACATTCTGGCAGCGTTCCCTGT AATAAATATAACCAGGGCGTATTGGGTATCTCGAAGGATGTGGCGCTGGTTCATTTCGCT GGTATCTATACCGGTATTGGTCTGGGGGCTTATATAAAATCTAAGTCGCGAGATGATATG CGTGTCAATTCTGCATTTACCTTTGGAGAAAAAGCGTTTCTTGGCTGGAACTTTGGGGCT TTTTCTACAGAAGCTTATATCCGGCATTTCTCGAATGGATCACTTACGGATAAAAATTCA GGGCATAATTTTGTAGGTGCTTCAATTAGTTATAATTTCTGAAGTTGAATAACAATTAGC GAGTTGCTGGCTGAAGGAGTAATTAATCACCGTACGTTGTCTACAAAACGTGTTGTGAAT AGCCGATCGTTATCGACCCTATGGCGACAGGGAGGCTAATTGTTAGCGACAAAGGCGTGG TAGGCCGTTTACCTTACCAGAACGTTTTATTATTGCTGCGACAGATTGCTTACTCATTTA CCTGCCACTGCAAACATTTTTTCCAGTATAGGGTGTAGATGCGCTTTTTCTGTTTTAGTA CAAACATGGTTTACGTTAGTTGCCTGCATTGACTTTACTGTGACCACTGCACAGGAAAGA TGTCCAATCAGTTCATGCAAAATCAGTTCATGCAAAATAACGTCTCTGGCATCAGCTAAC TTTTTAATTGTAGGCATAAAAAAACCAGCCCTGACAGGCTGGTTTTCAAGGGGAATTTTG GTCGGCAGCTTCATCCGCAGCATCTGCGGAGAGCAGCGCAGGTACGGCGACCACAAAAGC CGGGGAGGCATCAGCCAGCGCGGCGTCGGCTGACACAGCCAGAACGGCGGCAGCCGCCTC GTCATCAGCATCGTAGGCATCCACCCACGCCGCCGCATCTGATACCAGCGCATCACTGGC AGCGCAAAGCAGAGCTGCAGCCGGAGAATCGGCAACCAGAGCCGAAGAGGCCGCGAAACG GGCCGAGGATATCGCAGACGTGATTTCCCTGGAAGATGCAAGCCTGACGAAAAAAGGTAT CGTTAAATTAAGCAGTGCCACGGACAGTGACAGCGAAGCGCTGGCGGCCACACCAAAGGC GGTAAAAACCGTTATGGGTGAGGTACGGACCAAAGCGCCGCTGGACAGCCCGGCATTCAC TGGAACGCCGACCACACCGACGCCGCCAGGCGATGCTAAAGGGCTTCAGACAACAAACGC GGAGTTTGTCCGCAAACTGATTGCCGCGCTGGTTGGTTCCGTACTGGAGCCACTGGACAC CCTGCAGGAACTGGCTGACGCGTTGGGAAATGATCCGAACTTTGCCACCACGGTACTGAA TAAACTGGCGGGCAAGCAGCCGCTGGACGAAACCCTGACGGCGCTGTCAGGAAAAAGCGT TGACGGTCTTATCGAATACGTTGGTTTGCGAGAAACCATAAGTCGTGCCGCCGATGCATT ACAAAAATCACAGAATGGCGGCGATATTCCGGACAAGGATTTGTTTGTGCGTCGTATCGG TGCCGCGCGAGCGTTTGATGGCGCAGTTATTATCGGCTGTGATGATAATCCGTGGACGAC GGCGGAGTTTATCGTCTGGCTGGAGTCTCAGGGCGCATTCAATCACCCTTACTGGATGTG TCGTGGCTCCTGGTCTTACGCTTATAACAAAATCATCACGGATACTGGCTGCGGTAATAT CTGTCTCGCTGGCGCAGTGATTGAGGTAATGGGAGTGCGTGGCGCGATGACTATTCGGGT GACAACGTCCCATTCAGTATCTGGTTGGTGATACGTGGGTGACAGCCCCAAGTGTATAAG AAGGAATAATTATGACAGCGGAAAAAAAATAAAAAGAACAAACAGTTTTTAAATATTAAA AATTTCATTCCGTATGCACCGGAACCAGATGACACATTATTCGCCGATGCGGCGTATCTT AAATCAGAGGATGGTCAGGACTGGTATGGGTGCCAGCAATTATTTTCAGCAGACACGCTG AAAATTACCTACGACGATAACGATGTTATTACGTGTATTACGCGTGATGTTTCCGGGCTG TGGCCTGCTGGCCAGAGCGTTGCAGAGTTGCCTGATACGGATGAAAACCGTCGCGCTGAT ATTCATGCTGCTGGCAGTTTAAAGACGGTAAAGTCGTTCAAAGGGTTTATTCGCCGGAAG AGCTGCGCAGGCAGGCAGAATCGAAAATTGAACGCCCGGGCGTTGATACCGGATGATCTG GTCATCGTGGAAAGCGACCCTGAAAAAATCGACACTTTAGCTGTAAAATGACAGTCCCGC CATCCGGTCATCATAACGGATTTTTCTTCTGCACCTTCTGAAGCCCGCCATGTCAGGACG ACCATGAATCCGCCGATAACCTTATTGTGAAATTAAGACCAGGAAGAGATGATGTCTGCC GGACAGATACTATATGTAAATTTATAAAGGTTTTTTGTTATGCCCTTTCATATTGGAAGC GGATGTCTTCCCGCCACCATCAGTAATCGCCGCATTTATCGTATTGCCTGGTCTGATACC CCCCCTGAAATGAGTTCCTGGGAAAAAATGAAGGAATTTTTTTGCTCAACGCACCAGACT GAAGCGCTGGAGTGCATCTGGACGATTTGTCACCCGCCGGCCGGAACGACGCGGGAGGAT GTGATCAACAGATTTGAACTGCTCAGGACGCTCGCGTATGCCGGATGGGAGGAAAGCATT CATTCCGGCCAGCACGGGGAAAATTACTTCTGTATTCTGGATGAAGACAGTCAGGAGATA TTGTCAGTCACCCTTGATGATGCCGGGAACTATACCGTAAATTGCCAGGGGTACAGTGAA ACACATCGCCTCACCCTGGACACAGCACAGGGTGAGGAGGGCACAGGACACGCGGAAGGG GCATCCGGGACATTCAGGACATCCTTCCTCCCTGCCACAACGGCTCCACAGACGCCAGCA GAGTATGATGCTGTCTGGTCAGCGTGGAGAAGGGCTGCACCCGCAGAAGAGTCACGCGGC CGTGCAGCAGCGGTACAGAAAATGCGTGCCTGCCTGAATAATGGCAATGCAGTGCTTAAC GTGGGAGAATCAGGTCTTACCACCTTGCCAGACTGTTTACCCGCGCATATTACCACACTG GTTATTCCTGATAATAATCTGACCAGCCTGCCGGCGCTGCCGCCAGAACTGCGGACGCTG GAGGTCTCTGGTAACCAGCTGACTAGCCTGCCGGTGCTGCCGCCAGGACTACTGGAACTG TCGATCTTTAGTAACCCGCTGACCCACCTGCCGGCGCTGCCGTCAGGACTATGTAAGCTG TGGATCTTTGGTAATCAACTGACCAGCCTGCCGGTGTTGCCGCCAGGGCTACAGGAGCTG TCGGTATCTGATAACCAACTGGCCAGCCTGCCGGCGCTGCCGTCAGAATTATGTAAGCTG TGGGCCTATAATAACCAGCTGACCAGCCTGCCGACGTTGCCGTCAGGGCTACAGGAGCTG TCGGTATCTGATAACCAACTGGCCAGCTTGCCGACGCTGCCGTCAGAATTATATAAGCTG TGGGCCTATAATAATCGGCTGACCAGCCTGCCGGCGTTGCCGTCAGGACTGAAGGAGCTG ATTGTATCTGGTAACCGGCTGACCAGTCTGCCGGTGCTGCCGTCAGAACTGAAGGAGCTG ATGGTATCTGGTAACCGGCTGACCAGCCTGCCGATGCTGCCGTCAGGACTACTGTCGCTG TCGGTCTATCGTAACCAGCTGACCCGCCTGCCGGAAAGTCTCATTCATCTGTCTTCAGAG ACAACCGTAAATCTGGAAGGGAACCCACTGTCTGAACGTACTTTGCAGGCGCTGCGGGAG ATCACCAGCGCGCCTGGCTATTCAGGCCCCATAATACGATTCGATATGGCGGGAGCCTCC GCCCCCCGGGAAACTCGGGCACTGCACCTGGCGGCCGCTGACTGGCTGGTGCCTGCCCGG GAGGGGGAACCGGCTCCTGCAGACAGATGGCATATGTTCGGACAGGAAGATAACGCCGAC GCCTTCAGCCTCTTCCTGGACAGACTGAGTGAGACGGAAAACTTCATAAAGGACGCGGGG TTTAAGGCACAGATATCGTCCTGGCTGGCACAACTGGCTGAAGATGAGGCGTTGAGAGCA AACACCTTTGCTATGGCAACAGAGGCAACCTCAAGCTGCGAGGACCGGGTCACATTTTTT TTGCACCAGATGAAGAACGTACAGCTGGTACATAATGCAGAAAAAGGGCAATACGATAAC GATCTCGCGGCGCTGGTTGCCACGGGGCGTGAGATGTTCCGTCTGGGAAAACTGGAACAG ATTGCCCGGGAAAAGGTCAGAACGCTGGCTCTCGTTGATGAAATTGAGGTCTGGCTGGCG TATCAGAATAAGCTGAAGAAATCACTCGGGCTGACCAGCGTGACGTCAGAAATGCGTTTC TTTGACGTATCCGGCGTGACGGTTACAGACCTTCAGGACGCGGAGCTTCAGGTGAAAGCC GCTGAAAAAAGCGAGTTCAGGGAGTGGATACTGCAGTGGGGGCCGTTACACAGAGTGCTG GAGCGCAAAGCGCCGAAACGCGTTAACGCGCTTCGTGAAAAGCAAATATCGGATTATGAG GAAACGTACCGGATGCTGTCTGACACAGAGCTGAGACCGTCTGGGCTGGTCGGTAATACC GATGCAGAGCGCACTATCGGAGCAAGAGCGATGGAGAGCGCGAAAAAGACATTTTTGGAT GGCCTGCGACCTCTTGTGGAGGAGATGCTGGGGAGCTATCTGAACGTTCAGTGGCGTCGT AACTGATGCACCAGGTGAATGAGGTGCGGTGCGACAAAGATATTCCCGGACGAACAACAT CAGACAGTACGGATGATGTACAGGTGAAATAGGGGAGACTTCTTCAGTCAGGGCGCGGCG CAACTTTTTCGATGATAACGCGCCGCGCGCCGGTAGCGAGAAGCCGATGGAAGTACTGGA TCACCTGAATGCAAAGAAGGGCAGGGGAAAGCTGTACTTTGCCGGGGAGGGTATCCAGCA ACAGTGGGCTATGAAGAGAAACATACTGTCATCCCGATATACCACCCGCTATGAAGACCT GCTTCAGGTTAAGTGACAGGTTTACCCTGATTTTCAAATTTCTGATGTGATGGTGTGCCG CAGCCACATTGTATGCAAGAACGGGCTGCGGCAAACTGGCGATCGTTCGATAGTGCGTGT ATTGAATAGTTACCAGTCGTGGCGGATTCTACTGGTTAAGGATGACTAATCAATGTATTT AAGTCATCTGTTCAACTTTTCGCGTTGGAGGGAGCTTGAAGTCAATTTGCAGTGACCTTC GATAGCTATTTCACCATCATTTCACCATTTGCAAATTGGATATATAAAAAAACCAGCCCT GGCAGGCTGGCTTTTAAGGGGAATTTTGGTCGGCACGAGAGGATTTGAACCTCCGACCCC CGACACCCCATGACGGTGCGCTACCAGGCTGCGCTACGTGCCGACTTGTGGGTGCTAATA CTACCTCTTTCCAACGCGAATGCAAGGGGAAACGGTGCTAACTGATTTATAATTAATCAG TTAGCGATAAAACGTTTCTCTTCTGTTAGCACTTGCAGCAGCAGACTGAGCTGCGGCTTC TGATCTTTGATCTTCTCGCCGTGTAAGTCATAGGTCTGATAATGACCGTTATTATTGAGC ACCAGGGTCATTTGCGGCGTCGTGATTGCCAGCGTACTGCCGTCTGCCGCCGTTACCCAG TTATGACGACGTGGAACGGTAAAGATGTCCTGGCCCTGTGAATATTCGTTCGCTGGCGTG CTGACATGTAACAGGCGTTGCATCAACGTGGTCATCACATCGGTATGATCGGTAAGCACA TTAATACGCTGCGCAGGCGTCCCCGGCCAGTGGATCACCAGCGGTACTTGCAGATGACCT TGCGACCAGTCGAAGCGATTTTCTTCCGGCGTCAACGGTATGCCGCGTCCTGCGGTAATG ATCACGACAGTATTGTCGAATTTACCGGCCTCTCGCAGCGCGTTCAGAACCCGATTGATT TGCGCATCCACGTCGCTGGCGGCACTGGCGTAACGCTTAACAAAATTTTTCTGGTTACTG TCATCAATGTTAGTACCGTTAAACGATATCCATGAGAACCAGCGGTTATCTTCCTGTGCG TAGCGCCCAAGCCAGTCTATCCACTGGCTGGCCGTTTGCGCATCAGACTGCGTTTGCGCT GCCGGCATCGAGAAATCGGACAGTAATGCCTGACGATAAAGCGGGCTGGCGAAGCCATCC GAAGAAAACAGTCCCAGTTGGTAGCCTTGCTGATTCAACGCGGTAATGAGCGCCGCAGGC GTTCTGGTGGATAACACGCCATCCATATAGCCTGGCGATATGCCATAGAACAGGCCGAAA ATACCGTTATCAGTGGTATTCCCTGAACTCATATGACGGGTGAAGTCGATGTTTTGCTCG GCAAATGTAGCCAGCTCCGGCATCTGCTTCTCAAAGCGAGAATAGTTCAGGCCGTCTACG GTAATGAGCAGCACATTCTGACCGGTGCCCATATCGCGATAGTGCAAATTGCTGAGCGGG TACTGAACGGAGACCGCTTCCGGATTGCCTTGCTCTACCAGACGGCGCTGATATTCCTGC GCATCCAGCAGACCGTGTTTTTCAAGAAAACGTCGCGCCGTCATCGGATAAGAGAGCGGC AGGTTTGCCCGCTGCATGGTAATCGGCCGGTAAAAATTAGCGTCTGCCCAGATGTAGATA AGATGCGATGCGATAAAGGAGACGAAAAAGAATGCCGCAAGCGGCCTTGCGAAATGGCGG CGGCGCGTGAGACTGCGCAGCTTTTGCCAACTCCATGTCGCAAATAGCATCTCAATCAAT AAGATAACTGGCACGCTAATAAACATAAGCTGCCAGTCGCGCGCCATTTCGTTCTGGTCA GGGTTGATGACCAGTTCCCAGACAATGGGGTTAAGATGCAGGTGAAAACGGGTAAAGACT TCGCTGTCGATAAGCAACAACGTCATACCCGCGGTCGCCAGAATGGCTGATAAAAACCGC ATCAGCCGCTGGGACATCACGATAAACGTGAGCGGAAAAAGAATAAGCAAATAGGTGGCG AACACCAGAAAGCTAAAGTGCCCGACAATGCTCAGGTAGGAGTATATGCGACCCGCAAGC GTTGTCGGCCAGTCGGCGACAAACAGGTAACGGCTGCCGAGCAACGTAGCCAACAGTATA TTGAACAGAGCGAACCAGTGCCCCCAGCTAACCATCTGGGAGACTTTTTCACGGTAGCGC TGACGATGAGTTACCATACCTGTCGCTTGTTTCTCCGGAGTCGGCTTTTTAGTGCGCGTT GTCTTCGCTAATCGAAGACTGCAAGGCGCGGGCAAAAGAGTTCGCAATCGCCTGGCGTTG AGCCGGCGCCACGCTGGTGTTGATAAGGTTGGTGACCATATTTCCCAGTACCATCAGGGA AAGATCGGTCGGCGCCTTATGTTTTTCCAGTACACTGAGCAGTTCGCTCAGCAGTTGTTC AACATGTTCATCACTATAGCGGGAGAGTTGTGGCATAAATCAAAATCTGTTTGTTCATGA AAGGGCAACATATTACCGTAGCAACAGTTTTTTTTCTGCATTTTTATCCCCTAAATCATT CGCGTTACGGATAACGCCTGAAATGACAGGGCGATTGCTTGCGTCTTCCGGCAGGCGGTG GTTGAATACCGCCCGGTCTTAAAGGAGAGTTTATCATGAGTCTGGATATCAACCAGATTG CCCTGCACCAGCTTATCAAGCGCGATGAGCAAAATCTTGAGCTGGTCTTGCGCGATTCAT TGCTGGAGCCGACAACCACCGTTGTCGAGATGGTGGCTGAACTGCATCGGGTCTATAGCG CCAAGAATAAGGCGTATGGCCTGTTTAATGAAGAGAGTGAACTGGCGCAAGCGCTGCGGT TGCAACGTCAGGGGGAAGAAGATTTTCTTGCCTTTAGCCGGGCGGCGACCGGACGCCTGC GTGACGAACTGGCGAAATATCCCTTTGCGGACGGCGGCATTGTATTGTTCTGCCATTATC GTTACCTGGCGGTGGAGTATCTGCTGGTTACGGTACTGAACAACCTGAGCAGTATGCGGG TCAATGAAAATCTGGACATTAACCCGACGCATTATCTTGATATCAACCATGCGGATATCG TGGCGCGTATCGATCTTACCGAGTGGGAAACTAATCCGCAATCGACCCGCTACCTGACGT TCCTGAAAGGTCGGGTAGGGCGCAAGGTCGCTGACTTCTTTATGGATTTCCTCGGCGCCA GCGAAGGGTTGAACGCCAAAGCGCAGAATCGCGGCCTGTTGCAGGCAGTGGATGATTTCA CCGCAGAAGCGCAGTTGGATAAAGCAGAACGTCAGAACGTGCGTCAGCAGGTGTACAGCT ACTGCAACGAGCAGTTACAAGCCGGGGAAGAGATTGAGCTGGAATCGCTGTCTAAAGAGC TTTCCGGCGTCAGTGAAGTCAGCTTCAGCGAATTTACCGCCGAAAAAGGCTATGAGCTGG AAGAGAGCTTCCCGGCAGATCGCAGTACGCTACGCCAGTTAACCAAATATGCCGGCAGCG GCGGCGGGTTAACGATTAACTTTGATGCGATGCTACTGGGCGAGCGGATTTTCTGGGACC CGGCGACCGATACCCTGACTATCAAAGGGACGCCGCCGAATTTGCGCGATCAGTTGCAGC GACGCACGTCGGGCGGGAAATAAAGGCATACGACATAAAAGGACGCCGTAGTGAGTAAAG GAATACGTCAGAGGCCGCCTGTTAATTTCAGTTTATTTCGGCAGGTTTTGTATGCGCACA TTGTCGCATTTTTGATGATGTTGATGCTCGGCATGGTGTTCACCGTTCTCTCGTTGGTAC TGTTTTATACTTATGGCGCCAACTGGTTACTGAGCTTGTTCATATGCCCGCTGTTCTTGT TAAGTGGTTTATTCATTACTGGATTTGCTTTTAAATCAACCTGGTCCAGCATACGTTACT ATTACGACAAGGGGCAGTTGAAACGGTATGGACTCAATCTTGATGCAACTTTGACGCATA AAGAGAAGGTGGAAATACGCATCGATAATGCAAAGCGTCAAGTGCGTGTAGATGAACTGG AACTCCATGTCTTATTTGATTTTCAGTTTGATAGCAAGACATGGAGCTGCGGCGACTTAC TGACCAATGAAAAGGTATTTGATGCGTTGAATGATGGGCAAACGATACCAATACGAATTT TGCCATGGAAACCGGAAAGTGCCAGCGTTCGTCAACGGGCATTATTCAATCGGCTTAAAG GTATGAATACCGCGGCGGAAACTACAGATCCTCGATTAGGGGAGGCGCTAATTGAATGTG GCGAGGTGTAAGAAAGCAGAAAAGCAAAGTGGGTTCTCGTTGCTCTGCATGTCGTCAAAT TCAATTAAACGCATAAAAAAACCCCGCCGGGGCGGGGTTTTTCTTCAACTTCCAGGCGAT TACGCGCGAACGAAGTCGATGTGAGTCAGCTTCGGTTTGTAAGCGTGACGCTGTACAGCC TGAGCTTTAACTTTTACTTCTTTACCGTCAACAACGAGGGTCAGAACTTCGCTGTAGAAT TCAGCTTTAGCTTGCATGTTCATCACCTGGTCGTGGTCCAGTTCGATAGCAATCGGGGCT TCAGAACCGCCGTAGATGATTGCCGGGAACTTGTTAGCGGCGCGCAGGCGGCGGCTCGCA CCCTTACCCTGCTCTTTACGTACTTCTGCGTTGATAGTAAACATTTAAATCTCTCTTTAA TAATTCCTGCTACAGGCGACCCAGCAACAGGTAAGTGATCTGCTTTGCGTATGCAAAGGC GGGCGGGATTCTATACTCAAATCGCCGTTACATCAATGAAAAGTACAATTAACCACGTAA TTCGTGCGCCCGGCGGAAGCGGCCTTCATAGTCGAACACTTTTTCACGCACCTGCCAGTA CTGGCCTTTCATCCGCGCGACCACAAAATCGGGATGCCGCAACAGCGCCTGCTGCGCGAC AATATCCGCCGCCGTGATCCAGCGTAAAGGAACGCCGGGCGTGCGCGTATGCGGGCGAAT AAATAGCTGTTCGAAAGCGGTACGCTGGGCGGGCGTGTGCAAGCGGAAGCGCTCACTGAC ATCCGCGCCGTCCTCGTCATAGTAAGTGATTTTCAGCCATTCGCCTTTCTCATCCTGCCC ATGCTGCATCGTCATTCCGCTACAGCGCAGGACTAACGCATCCTTGAGCCTGAGCGCCGC TTTTAACATATCGTCCGGGTCGACCAGAATGGCGTCACATTCCCGGCAGCGTCGGGCGGC AATATCGTTTTCGGCATTACACTGCGGGCAGTTTTTGAAGCGAAAGCGAAAATCGCACTG CTCGCGATGGCCGTCGTCATCCTCAAACCAGCCCTGGCAGCGACGGCCAAAGTGTTCAAT CAGCGTGCCGTCGGCAGTGGTTTTCCCCCAGAAGGTGTTGGCAAAGCCGCAGGCCGGGCA AAATACCTGGACAGGGACGTTATCGCTTTTTCCCTTCGGGCTACCGACCTCCGGGGCATA CAGGTCGTGCGGGTTGCCTGCGTAATCAAGAATCAGGCAATCGGTCTTTCCCGGCGCAAG GCGCAGACCACGCCCGACAATTTGTTGGTAAAGACTAACTGACTCCGTGGGACGTAGAAT CGCGATGAGATCAACGTGTGGGGCGTCAAAGCCGGTGGTCAGTACCGAGACGTTAACCAG ATAGCGAAAACGCTGCGCCTTGAAATTATCAATCAGCGCGTCGCGCTCGGGCCCTGGCGT ATCGCCGGTAATCAGCGCCGCGTCGTCCGCCGGAAGCAGACCGACAATCTCTTTCGCATG TTCGACCGTGGCGGCGAAAATCATCACGCCTTTGCGCGTTTGCGCAAATTCCATAATCTG GCTGATGATGTGCGGCGTAATCCGCTGCTGCTTTTTCAGCTCGCGGTTCAGGTCGGCTTC GCTGAACAGCCCATTGCTTTGGGCCTGCAGGCGGCTGAAATCGTATTGGACCACTGGCAT ATCAAGCCGCTCAGGCGGCGTCAGATAGCCGTGTTTAATCATATAGCGCAGCGGCAGTTC ATAAATACAGTCGCGAAACAGAGCGTTGTCGTTGCCGCGCACCATACCGTGATAATGAAA TTGATAAATCCAGCCTTTTCCGAGGCGAAAAGGCGTGGCGGTGAGTCCAAGCAGACGTAA GTGAGGATTAACTTTACTCAGGTGAGTGAGGATTTGCTGATACTGACTGTCTTCATCGTC ACCGATGCGGTGGCATTCATCGACAATCAACAGCGAAAACTCCTCCTGGAAGGCGTCAAG ATTACGCGCCACCGACTGTACGCTGCCGAACACGACTTTGCCCTGACTCTCTTTACGTTT GAGTCCGGCGGCGAAAATATCCGCTTCCAGCCCCAGCGCGCAATATTTGGCGTGGTTCTG CGCGACCAGCTCTTTCACATGCGCCAGCACCAGTACCCGTCCGCGGGCGACGCGCGCCAG TTCGGCGATCACCAGGCTTTTACCTGCGCCGGTCGGCAGAACAATCACGGCGGGCGTACG GTGGCGGCGAAAGTGGCTGAGCGTGGCGTCTACGGCTTCTTGCTGGTAGGGGCGGAGTGT AAAAATCATGGTCTCACTACGTTAAACGGTTCCGGGAATAGTATGCCATGAATCATTTCC CTTGAGGGATATAGTTAGCCCGCTATACTGAGCGGATAGCAATTCCCTTTTTTCGGGTAG AATGCCCGATTTCCGTATTATTACAGGCTAAATCACACACATGCGACTTGATAAATTTAT CGCTCAGCAGCTTGGCGTCAGCCGCGCTATTGCCGGGCGTGAAATTCGTGGTAACCGCGT TACCGTCGATGGCGACATCATTAAAAATGCGGCCTTCAAACTGCTCCCGGAACATGCGGT TGCGTATGACGGCAATCCCTTAGCGCAGCAACACGGGCCACGCTATTTTATGCTTAACAA GCCGCAGGGATACGTTTGTTCAACCGATGATCCCGATCATCCAACGGTGCTGTATTTCCT GGATGAGCCGGTGGCGTATAAGCTGCATGCCGCAGGACGTCTGGATATCGATACTACCGG TCTGGTGTTAATGACAGATGACGGTCAGTGGTCGCACCGCATTACGTCGCCGCGCCATCA CTGTGAAAAAACCTATCTGGTGACCCTGGAGTCGCCGGTGGCCGACGATACGGCAGCGCA ATTTGCGAAAGGCGTGCAGTTGCATAATGAAAAAGATCTCACTAAACCCGCTACGCTGGA GGTGATAACACCTGTGCAGGTCCGTCTGACCATCAGCGAAGGCCGTTATCATCAGGTGAA GCGGATGTTTGCCGCAGTAGGCAATCGCGTTGTGGAACTGCACCGCGAACGGATTGGCGC CATTACGCTGGATGAGAATCTGGCTCCCGGCGAGTACCGCCCGTTGACTGAAGAAGAAAT CGCCAGCGTCGGCTAACTATCTCGTTAAATTCAGGAGTTCGATGTGACCACCCGGCAGCA CTCTTCCTTTGCCATTGTCTTTATTCTTGGCCTGTTGGCCATGTTAATGCCGCTGTCGAT TGATATGTATCTTCCAGCGCTGCCGGTGATTTCTGCGCAATTCGGCGTGCCTGCCGGTAG CGCGCAGATGACGCTCAGCACCTATATTCTGGGGTTTGCGCTGGGTCAGCTTATCTATGG ACCGATGGCGGATAGCCTCGGGCGTAAGCCGGTCATCCTGGGCGGGACGCTGGTATTTGC CGCTGCGGCGGTCGCCTGTGCGTTGGCGCAGACTATCGATCAACTGATCGTGATGCGTTT CTTTCACGGTTTGGTGGCTGCGGCGGCAAGCGTCGTCATCAATGCGCTGATGCGGGATAT TTATCCAAAGGAAGAGTTTTCGCGCATGATGTCATTTGTCATGCTGGTCACTACGATAGC GCCGTTAATGGCGCCCATTGTTGGCGGCTGGGTGTTGGTATGGTTAAGCTGGCACTATAT CTTCTGGATACTGGCTATTGCGGCGATTCTGGCGTCAGTCATGATCTTTGCTTTGATTAA AGAGACGCTGCCCGTTGAGCGGCGTCAGCCTTTTCATATTCGTACCACAATAGGTAACTT TGCCGCGTTGTTTCGCCACAAACGCGTACTGAGCTATATGCTGGCGAGCGGGTTCAGTTT TGCCGGTATGTTCTCTTTTTTGAGCGCGGGGCCGTTTGTCTATATCGAAATTAATCATGT TCCGCCGCAGGATTTCGGCTACTACTTCGCGTTGAACATCGTATTTCTGTTTGTGATGAC GATTATCAACAGCCGTTTTGTCAGACGGGTAGGGGCGCTAAACATGTTTCGGGCCGGGCT ATGGATTCAGTTTGCGATGGCGGTGTGGATGGTTTTCAGCGCGCTGATGGGCATTGGATT CTGGGCGCTGGTGGTTGGCGTTGCGGCGTTTGTCGGCTGTGTGTCGATGGTTTCGTCCAA TGCGATGGCGGTCATTTTGGATGAGTTTCCGCATATGGCCGGAACGGCGTCTTCGTTGGC GGGCACTTTCCGCTTTGGTATTGGCGCTATCGTCGGCGCGTTGCTGTCGCTGGCTACCTT TAACAGTGCGTGGCCGATGATCTGGTCGATTGCGCTTTGCGCCGCCTGTTCCATTCTGTTRoary-3.8.0/t/data/genbank_gbff/genbank3.gff.proteome.faa.expected000066400000000000000000000025131304207556500247260ustar00rootroot00000000000000>ERS325326_00001.p01 MPEVTPFQVLIVDDHPLMRRGIRQLLELDPAFYVVAEAGDGASAIDLANRIEPDLILLDL NMKGLSGLDTLNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAI RKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNI SEQTVKVHIRNLLRKLNVRSRVAATILFLQTRGMQ* >ERS325326_00003.p01 VISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRTKAPLDSPAFTGTPTTP TPPGDAKGLQTTNAEFVRKLIAALVGSVLEPLDTLQELADALGNDPNFATTVLNKLAGKQ PLDETLTALSGKSVDGLIEYVGLRETISRAADALQKSQNGGDIPDKDLFVRRIGAARAFD GAVIIGCDDNPWTTAEFIVWLESQGAFNHPYWMCRGSWSYAYNKIITDTGCGNICLAGAV IEVMGVRGAMTIRVTTSHSVSGW* >ERS325326_00004.p01 MPFHIGSGCLPATISNRRIYRIAWSDTPPEMSSWEKMKEFFCSTHQTEALECIWTICHPP AGTTREDVINRFELLRTLAYAGWEESIHSGQHGENYFCILDEDSQEILSVTLDDAGNYTV NCQGYSETHRLTLDTAQGEEGTGHAEGASGTFRTSFLPATTAPQTPAEYDAVWSAWRRAA PAEESRGRAAAVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE NFIKDAGFKAQISSWLAQLAEDEALRANTFAMATEATSSCEDRVTFFLHQMKNVQLVHNA EKGQYDNDLAALVATGREMFRLGKLEQIAREKVRTLALVDEIEVWLAYQNKLKKSLGLTS VTSEMRFFDVSGVTVTDLQDAELQVKAAEKSEFREWILQWGPLHRVLERKAPKRVNALRE KQISDYEETYRMLSDTELRPSGLVGNTDAERTIGARAMESAKKTFLDGLRPLVEEMLGSY LNVQWRRN* Roary-3.8.0/t/data/genbank_gbff/genbank_gene_presence_absence.csv000066400000000000000000000032701304207556500250600ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","genbank1","genbank2","genbank3" "group_10","","side tail fiber protein","2","2","1","2","3","2","2","","791","791","791","","ERS325340_00003.p01","ERS325326_00003.p01" "group_11","","secreted effector protein","2","2","1","2","1","2","1","","2366","2366","2366","","ERS325340_00004.p01","ERS325326_00004.p01" "group_9","","transcriptional regulator NarP","2","2","1","2","2","2","3","","647","647","647","","ERS325340_00001.p01","ERS325326_00001.p01" "group_1","","2-dehydro-3-deoxyphosphooctonate aldolase","1","1","1","1","1","1","1","","854","854","854","ERS325254_00002.p01","","" "group_2","","regulator","1","1","1","1","2","1","8","","809","809","809","ERS325254_00003.p01","","" "group_3","","regulator","1","1","1","1","8","1","7","","389","389","389","ERS325254_00004.p01","","" "group_4","","N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase","1","1","1","1","7","1","6","","833","833","833","ERS325254_00005.p01","","" "group_5","","peptide chain release factor 1 (RF-1)","1","1","1","1","6","1","5","","1082","1082","1082","ERS325254_00006.p01","","" "group_6","","glutamyl-tRNA reductase","1","1","1","1","5","1","4","","1256","1256","1256","ERS325254_00007.p01","","" "group_7","","outer membrane lipoprotein","1","1","1","1","4","1","3","","623","623","623","ERS325254_00008.p01","","" "group_8","","isopentenyl monophosphate kinase","1","1","1","1","3","1","2","","851","851","851","ERS325254_00009.p01","","" Roary-3.8.0/t/data/gene_category_count.csv000066400000000000000000000207511304207556500205460ustar00rootroot00000000000000Gene,Non-unique Gene name,Annotation,No. isolates,No. sequences,Avg sequences per isolate,Genome Fragment,Order within Fragment,Accessory Fragment,Accessory Order with Fragment,QC,"Min group size nuc","Max group size nuc","Avg group size nuc",sample1,sample2,sample3,sample4,sample5,sample6,sample7,sample8,sample9,sample10,sample11,sample12,sample13,sample14,sample15,sample16,sample17,sample18,sample19,sample20,sample21,sample22,sample23,sample24,sample25,sample26,sample27,sample28,sample29,sample30 bcsC_1,,cellulose synthase subunit BcsC,9,9,1,11,5692,,,,,,,sample1_001,sample2_001,sample3_001,sample4_001,sample5_001,sample6_001,sample7_001,sample8_001,sample9_001,sample10_001,sample11_001,sample12_001,sample13_001,sample14_001,sample15_001,sample16_001,sample17_001,sample18_001,sample19_001,sample20_001,sample21_001,sample22_001,sample23_001,sample24_001,sample25_001,sample26_001,sample27_001,sample28_001,sample29_001,sample30_001 betC_2,,sulfatase,9,9,1,11,1876,,,,,,,,sample2_002,sample3_002,sample4_002,sample5_002,sample6_002,sample7_002,sample8_002,sample9_002,sample10_002,sample11_002,sample12_002,sample13_002,sample14_002,sample15_002,sample16_002,sample17_002,sample18_002,sample19_002,sample20_002,sample21_002,sample22_002,sample23_002,sample24_002,sample25_002,sample26_002,sample27_002,sample28_002,sample29_002,sample30_002 comM_2,,putative ATP-dependent protease,9,9,1,11,6422,,,,,,,,,sample3_003,sample4_003,sample5_003,sample6_003,sample7_003,sample8_003,sample9_003,sample10_003,sample11_003,sample12_003,sample13_003,sample14_003,sample15_003,sample16_003,sample17_003,sample18_003,sample19_003,sample20_003,sample21_003,sample22_003,sample23_003,sample24_003,sample25_003,sample26_003,sample27_003,sample28_003,sample29_003,sample30_003 dmsA4_1,,anaerobic dimethyl sulfoxide reductase subunit A,9,9,1,11,540,,,,,,,,,,sample4_004,sample5_004,sample6_004,sample7_004,sample8_004,sample9_004,sample10_004,sample11_004,sample12_004,sample13_004,sample14_004,sample15_004,sample16_004,sample17_004,sample18_004,sample19_004,sample20_004,sample21_004,sample22_004,sample23_004,sample24_004,sample25_004,sample26_004,sample27_004,sample28_004,sample29_004,sample30_004 dosC,,diguanylate cylase,9,9,1,11,909,,,,,,,,,,,sample5_005,sample6_005,sample7_005,sample8_005,sample9_005,sample10_005,sample11_005,sample12_005,sample13_005,sample14_005,sample15_005,sample16_005,sample17_005,sample18_005,sample19_005,sample20_005,sample21_005,sample22_005,sample23_005,sample24_005,sample25_005,sample26_005,sample27_005,sample28_005,sample29_005,sample30_005 dsbA_3,,Thiol:disulfide interchange protein,9,9,1,11,1676,,,,,,,,,,,,sample6_006,sample7_006,sample8_006,sample9_006,sample10_006,sample11_006,sample12_006,sample13_006,sample14_006,sample15_006,sample16_006,sample17_006,sample18_006,sample19_006,sample20_006,sample21_006,sample22_006,sample23_006,sample24_006,sample25_006,sample26_006,sample27_006,sample28_006,sample29_006,sample30_006 fadH_1,,2 4-dienoyl-CoA reductase,9,9,1,11,5287,,,,,,,,,,,,,sample7_007,sample8_007,sample9_007,sample10_007,sample11_007,sample12_007,sample13_007,sample14_007,sample15_007,sample16_007,sample17_007,sample18_007,sample19_007,sample20_007,sample21_007,sample22_007,sample23_007,sample24_007,sample25_007,sample26_007,sample27_007,sample28_007,sample29_007,sample30_007 fimD_3,,outer membrane usher protein FimD,9,9,1,11,1813,,,,,,,,,,,,,,sample8_008,sample9_008,sample10_008,sample11_008,sample12_008,sample13_008,sample14_008,sample15_008,sample16_008,sample17_008,sample18_008,sample19_008,sample20_008,sample21_008,sample22_008,sample23_008,sample24_008,sample25_008,sample26_008,sample27_008,sample28_008,sample29_008,sample30_008 fliB_2,,lysine-N-methylase,9,9,1,11,1159,,,,,,,,,,,,,,,sample9_009,sample10_009,sample11_009,sample12_009,sample13_009,sample14_009,sample15_009,sample16_009,sample17_009,sample18_009,sample19_009,sample20_009,sample21_009,sample22_009,sample23_009,sample24_009,sample25_009,sample26_009,sample27_009,sample28_009,sample29_009,sample30_009 fliF,,flagellar MS-ring protein,9,9,1,11,1176,,,,,,,,,,,,,,,,sample10_010,sample11_010,sample12_010,sample13_010,sample14_010,sample15_010,sample16_010,sample17_010,sample18_010,sample19_010,sample20_010,sample21_010,sample22_010,sample23_010,sample24_010,sample25_010,sample26_010,sample27_010,sample28_010,sample29_010,sample30_010 ftsN,,cell division protein FtsN,9,9,1,11,6144,,,,,,,,,,,,,,,,,sample11_011,sample12_011,sample13_011,sample14_011,sample15_011,sample16_011,sample17_011,sample18_011,sample19_011,sample20_011,sample21_011,sample22_011,sample23_011,sample24_011,sample25_011,sample26_011,sample27_011,sample28_011,sample29_011,sample30_011 gatY_1,,fructose-bisphosphate aldolase,9,9,1,11,5872,,,,,,,,,,,,,,,,,,sample12_012,sample13_012,sample14_012,sample15_012,sample16_012,sample17_012,sample18_012,sample19_012,sample20_012,sample21_012,sample22_012,sample23_012,sample24_012,sample25_012,sample26_012,sample27_012,sample28_012,sample29_012,sample30_012 glfT2,,glycosyltransferase cell wall biogenesis,9,9,1,11,4176,,,,,,,,,,,,,,,,,,,sample13_013,sample14_013,sample15_013,sample16_013,sample17_013,sample18_013,sample19_013,sample20_013,sample21_013,sample22_013,sample23_013,sample24_013,sample25_013,sample26_013,sample27_013,sample28_013,sample29_013,sample30_013 group_1000,,membrane protein,9,9,1,11,593,,,,,,,,,,,,,,,,,,,,sample14_014,sample15_014,sample16_014,sample17_014,sample18_014,sample19_014,sample20_014,sample21_014,sample22_014,sample23_014,sample24_014,sample25_014,sample26_014,sample27_014,sample28_014,sample29_014,sample30_014 group_1001,,lipoprotein,9,9,1,11,597,,,,,,,,,,,,,,,,,,,,,sample15_015,sample16_015,sample17_015,sample18_015,sample19_015,sample20_015,sample21_015,sample22_015,sample23_015,sample24_015,sample25_015,sample26_015,sample27_015,sample28_015,sample29_015,sample30_015 group_1004,,arylsulfate sulfotransferase,9,9,1,11,2834,,,,,,,,,,,,,,,,,,,,,,sample16_016,sample17_016,sample18_016,sample19_016,sample20_016,sample21_016,sample22_016,sample23_016,sample24_016,sample25_016,sample26_016,sample27_016,sample28_016,sample29_016,sample30_016 group_1006,,putative inner membrane protein,9,9,1,11,2791,,,,,,,,,,,,,,,,,,,,,,,sample17_017,sample18_017,sample19_017,sample20_017,sample21_017,sample22_017,sample23_017,sample24_017,sample25_017,sample26_017,sample27_017,sample28_017,sample29_017,sample30_017 group_1009,,Phage-like protein,9,9,1,11,6416,,,,,,,,,,,,,,,,,,,,,,,,sample18_018,sample19_018,sample20_018,sample21_018,sample22_018,sample23_018,sample24_018,sample25_018,sample26_018,sample27_018,sample28_018,sample29_018,sample30_018 group_220,,putative glycosyl transferase,9,9,1,11,4174,,,,,,,,,,,,,,,,,,,,,,,,,sample19_019,sample20_019,sample21_019,sample22_019,sample23_019,sample24_019,sample25_019,sample26_019,sample27_019,sample28_019,sample29_019,sample30_019 group_277,,arylsulfate sulfotransferase,9,9,1,11,6149,,,,,,,,,,,,,,,,,,,,,,,,,,sample20_020,sample21_020,sample22_020,sample23_020,sample24_020,sample25_020,sample26_020,sample27_020,sample28_020,sample29_020,sample30_020 group_281,,transport system periplasmic binding protein,9,9,1,11,6046,,,,,,,,,,,,,,,,,,,,,,,,,,,sample21_021,sample22_021,sample23_021,sample24_021,sample25_021,sample26_021,sample27_021,sample28_021,sample29_021,sample30_021 group_283,,periplasmic protein,9,9,1,11,6091,,,,,,,,,,,,,,,,,,,,,,,,,,,,sample22_022,sample23_022,sample24_022,sample25_022,sample26_022,sample27_022,sample28_022,sample29_022,sample30_022 group_284,hemN_2,coproporphyrinogen III oxidase,9,9,1,11,6093,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sample23_023,sample24_023,sample25_023,sample26_023,sample27_023,sample28_023,sample29_023,sample30_023 group_288,,permease,9,9,1,11,5969,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sample24_024,sample25_024,sample26_024,sample27_024,sample28_024,sample29_024,sample30_024 hemD,,uroporphyrinogen III synthase,9,9,1,11,2788,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sample25_025,sample26_025,sample27_025,sample28_025,sample29_025,sample30_025 hsrA_2,,Inner membrane transport protein YieO,9,9,1,11,5993,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sample26_026,sample27_026,sample28_026,sample29_026,sample30_026 icsA,,autotransporter MisL,9,9,1,11,5845,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sample27_027,sample28_027,sample29_027,sample30_027 kdpD,,sensor protein KdpD,9,9,1,11,4196,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sample28_028,sample29_028,sample30_028 ligB_1,,NAD-dependent DNA ligase LigB,9,9,1,11,5819,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sample29_029,sample30_029 marT_1,,putative transcriptional regulator MarT,9,9,1,11,5849,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,sample30_030 ,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Roary-3.8.0/t/data/gene_name_field/000077500000000000000000000000001304207556500170625ustar00rootroot00000000000000Roary-3.8.0/t/data/gene_name_field/annotation_1.gff000066400000000000000000000273431304207556500221510ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 2340 ##sequence-region abc|SC|contig000002 1 2340 ##sequence-region abc|SC|contig000003 1 2340 ##sequence-region abc|SC|contig000004 1 2340 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00001;Name=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000002 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00003;Name=AAA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000002 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000003 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00005;Name=BBB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000003 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00006;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000004 Prodigal:2.60 CDS 172 1131 . - 0 ID=abc_00007;Name=CCC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000004 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00008;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >abc|SC|contig000002 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >abc|SC|contig000003 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >abc|SC|contig000004 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGRoary-3.8.0/t/data/gene_name_field/annotation_2.gff000066400000000000000000000273431304207556500221520ustar00rootroot00000000000000##gff-version 3 ##sequence-region efg|SC|contig000001 1 2340 ##sequence-region efg|SC|contig000002 1 2340 ##sequence-region efg|SC|contig000003 1 2340 ##sequence-region efg|SC|contig000004 1 2340 efg|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=efg_00001;Name=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=efg_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|efg_00001 efg|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=efg_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=efg_00002;product=hypothetical protein;protein_id=gnl|SC|efg_00002 efg|SC|contig000002 Prodigal:2.60 CDS 172 1131 . - 0 ID=efg_00003;Name=AAA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=efg_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|efg_00001 efg|SC|contig000002 Prodigal:2.60 CDS 1804 1950 . + 0 ID=efg_00004;inference=ab initio prediction:Prodigal:2.60;locus_tag=efg_00002;product=hypothetical protein;protein_id=gnl|SC|efg_00002 efg|SC|contig000003 Prodigal:2.60 CDS 172 1131 . - 0 ID=efg_00005;Name=BBB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=efg_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|efg_00001 efg|SC|contig000003 Prodigal:2.60 CDS 1804 1950 . + 0 ID=efg_00006;inference=ab initio prediction:Prodigal:2.60;locus_tag=efg_00002;product=hypothetical protein;protein_id=gnl|SC|efg_00002 efg|SC|contig000004 Prodigal:2.60 CDS 172 1131 . - 0 ID=efg_00007;Name=CCC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=efg_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|efg_00001 efg|SC|contig000004 Prodigal:2.60 CDS 1804 1950 . + 0 ID=efg_00008;inference=ab initio prediction:Prodigal:2.60;locus_tag=efg_00002;product=hypothetical protein;protein_id=gnl|SC|efg_00002 >efg|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >efg|SC|contig000002 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >efg|SC|contig000003 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG >efg|SC|contig000004 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGRoary-3.8.0/t/data/gene_name_field/expected_reannotated_groups_file000066400000000000000000000003301304207556500255640ustar00rootroot00000000000000AAA: abc_00003 efg_00003 BBB: abc_00005 efg_00005 CCC: abc_00007 efg_00007 group_4: abc_00004 efg_00004 hly: abc_00001 efg_00001 group_6: abc_00006 efg_00006 group_8: abc_00008 efg_00008 group_2: abc_00002 efg_00002 Roary-3.8.0/t/data/gene_name_field/groups000066400000000000000000000003471304207556500203300ustar00rootroot00000000000000group_1: abc_00001 efg_00001 group_2: abc_00002 efg_00002 group_3: abc_00003 efg_00003 group_4: abc_00004 efg_00004 group_5: abc_00005 efg_00005 group_6: abc_00006 efg_00006 group_7: abc_00007 efg_00007 group_8: abc_00008 efg_00008Roary-3.8.0/t/data/group_1.fa.aln000066400000000000000000000106241304207556500164410ustar00rootroot00000000000000>abc_00004 ATGAGTAAGAACATCACGAAAAATATAATTTTAACGACAACATTATTACTATTAGGTACT GTATTACCTCAAAATCAAAAACCAGTATTTAGTTTTTACTCTGAAGCTAAAGCTTATAGC ATTGGTCAAGATGAAACTAACATCAATGAATTAATTAAATATTACACACAGCCTCATTTT TCATTTTCAAATAAATGGCTATATCAATATGATAATGGAAACATTTATGTTGAACTTAAG AGATATTCATGGTCAGCACATATATCTTTATGGGGCGCTGAAAGTTGGGGAAATATTAAT CAGTTAAAAGATCGTTACGTAGATGTGTTTGGACTAAAAGACAAAGATACTGATCAGTTA TGGTGGTCTTATAGAGAGACATTTACAGGTGGCGTTACACCAGCCGCAAAACCTTCTGAT AAAACTTATAATCTTTTTGTGCAATACAAAGATAAACTACAAACGATTATTGGTGCGCAT AAAATATACCAAGGCAATAAACCAGTATTAACATTGAAAGAAATCGATTTCCGTGCACGA GAAGCGTTAATAAAAAATAAAATATTATATACCGAAAATCGTAATAAAGGTAAGCTTAAG ATCACCGGTGGCGGTAATAACTACACTATTGATTTAAGCAAAAGATTACATTCAGATCTA GCAAATGTTTATGTTAAAAATCCTAATAAAATAACTGTTGACGTC---CTC------TTT GATTAG >abc_00004 ATGAGTAAGAACATCACGAAAAATATAATTTTAACGACAACATTATTACTATTAGGTACT GTATTACCTCAAAATCAAAAACCAGTATTTAGTTTTTACTCTGAAGCTAAAGCTTATAGC ATTGGTCAAGATGAAACTAACATCAATGAATTAATTAAATATTACACACAGCCTCATTTT TCATTTTCAAATAAATGGCTATATCAATATGATAATGGAAACATTTATGTTGAACTTAAG AGATATTCATGGTCAGCACATATATCTTTATGGGGCGCTGAAAGTTGGGGAAATATTAAT CAGTTAAAAGATCGTTACGTAGATGTGTTTGGACTAAAAGACAAAGATACTGATCAGTTA TGGTGGTCTTATAGAGAGACATTTACAGGTGGCGTTACACCAGCCGCAAAACCTTCTGAT AAAACTTATAATCTTTTTGTGCAATACAAAGATAAACTACAAACGATTATTGGTGCGCAT AAAATATACCAAGGCAATAAACCAGTATTAACATTGAAAGAAATCGATTTCCGTGCACGA GAAGCGTTAATAAAAAATAAAATATTATATACCGAAAATCGTAATAAAGGTAAGCTTAAG ATCACCGGTGGCGGTAATAACTACACTATTGATTTAAGCAAAAGATTACATTCAGATCTA GCAAATGTTTATGTTAAAAATCCTAATAAAATAACTGTTGACGTC---CTC------TTT GATTAG >abc_00004 ATGAGTAAGAACATCACGAAAAATATAATTTTAACGACAACATTATTACTATTAGGTACT GTATTACCTCAAAATCAAAAACCAGTATTTAGTTTTTACTCTGAAGCTAAAGCTTATAGC ATTGGTCAAGATGAAACTAACATCAATGAATTAATTAAATATTACACACAGCCTCATTTT TCATTTTCAAATAAATGGCTATATCAATATGATAATGGAAACATTTATGTTGAACTTAAG AGATATTCATGGTCAGCACATATATCTTTATGGGGCGCTGAAAGTTGGGGAAATATTAAT CAGTTAAAAGATCGTTACGTAGATGTGTTTGGACTAAAAGACAAAGATACTGATCAGTTA TGGTGGTCTTATAGAGAGACATTTACAGGTGGCGTTACACCAGCCGCAAAACCTTCTGAT AAAACTTATAATCTTTTTGTGCAATACAAAGATAAACTACAAACGATTATTGGTGCGCAT AAAATATACCAAGGCAATAAACCAGTATTAACATTGAAAGAAATCGATTTCCGTGCACGA GAAGCGTTAATAAAAAATAAAATATTATATACCGAAAATCGTAATAAAGGTAAGCTTAAG ATCACCGGTGGCGGTAATAACTACACTATTGATTTAAGCAAAAGATTACATTCAGATCTA GCAAATGTTTATGTTAAAAATCCTAATAAAATAACTGTTGACGTC---CTC------TTT GATTAG >abc_00006 ATGAAAAAGAACATCATGAATAAATTAGTTTTATCAACAGCATTGTTACTTTTAGGAACC ACATCAACACAACTTCCTAAAACACCAATCAGTTTTTCATCTGAAGCAAAAGCCTATAAT ATCAGTGAAAACGAGACTAATATCAATGAGTTAATCAAATATTACACTCAGCCGCATTTT TCATTATCTGGAAAATGGCTATGGCAAAAGCCCAATGGTAGCATTCATGCAACATTGCAA ACGTGGGTTTGGTATAGTCATATTCAAGTGTTTGGATCCGAGAGTTGGGGAAACATTAAT CAGTTAAGAAATAAATACGTTGATATATTTGGAACTAAAGATGAGGACACAGTTGAAGGT TACTGGACTTATGATGAAACATTTACTGGTGGTGTTACGCCAGCAGCTACTTCATCTGAT AAACCTTATAGACTATTTTTAAAATATAGTGATAAACAACAAACTATCATCGGTGGACAT GAATTTTACAAAGGAAATAAACCAGTATTAACTTTAAAAGAATTAGATTTCCGTATTCGT CAAACATTAATAAAGAATAAAAAGTTATATAACGGAGAATTTAATAAAGGTCAAATTAAG ATAACTGCTGATGGAAATAATTACACGATTGATTTAAGTAAAAAGTTAAAATTAACTGAC ACAAACCGTTATGTTAAAAATCCTAAAAATGCACAAATTGAAGTCATACTCGAAAAATCT AACTAA >abc_00006 ATGAAAAAGAACATCATGAATAAATTAGTTTTATCAACAGCATTGTTACTTTTAGGAACC ACATCAACACAACTTCCTAAAACACCAATCAGTTTTTCATCTGAAGCAAAAGCCTATAAT ATCAGTGAAAACGAGACTAATATCAATGAGTTAATCAAATATTACACTCAGCCGCATTTT TCATTATCTGGAAAATGGCTATGGCAAAAGCCCAATGGTAGCATTCATGCAACATTGCAA ACGTGGGTTTGGTATAGTCATATTCAAGTGTTTGGATCCGAGAGTTGGGGAAACATTAAT CAGTTAAGAAATAAATACGTTGATATATTTGGAACTAAAGATGAGGACACAGTTGAAGGT TACTGGACTTATGATGAAACATTTACTGGTGGTGTTACGCCAGCAGCTACTTCATCTGAT AAACCTTATAGACTATTTTTAAAATATAGTGATAAACAACAAACTATCATCGGTGGACAT GAATTTTACAAAGGAAATAAACCAGTATTAACTTTAAAAGAATTAGATTTCCGTATTCGT CAAACATTAATAAAGAATAAAAAGTTATATAACGGAGAATTTAATAAAGGTCAAATTAAG ATAACTGCTGATGGAAATAATTACACGATTGATTTAAGTAAAAAGTTAAAATTAACTGAC ACAAACCGTTATGTTAAAAATCCTAAAAATGCACAAATTGAAGTCATACTCGAAAAATCT AACTAA >abc_00006 ATGAAAAAGAACATCATGAATAAATTAGTTTTATCAACAGCATTGTTACTTTTAGGAACC ACATCAACACAACTTCCTAAAACACCAATCAGTTTTTCATCTGAAGCAAAAGCCTATAAT ATCAGTGAAAACGAGACTAATATCAATGAGTTAATCAAATATTACACTCAGCCGCATTTT TCATTATCTGGAAAATGGCTATGGCAAAAGCCCAATGGTAGCATTCATGCAACATTGCAA ACGTGGGTTTGGTATAGTCATATTCAAGTGTTTGGATCCGAGAGTTGGGGAAACATTAAT CAGTTAAGAAATAAATACGTTGATATATTTGGAACTAAAGATGAGGACACAGTTGAAGGT TACTGGACTTATGATGAAACATTTACTGGTGGTGTTACGCCAGCAGCTACTTCATCTGAT AAACCTTATAGACTATTTTTAAAATATAGTGATAAACAACAAACTATCATCGGTGGACAT GAATTTTACAAAGGAAATAAACCAGTATTAACTTTAAAAGAATTAGATTTCCGTATTCGT CAAACATTAATAAAGAATAAAAAGTTATATAACGGAGAATTTAATAAAGGTCAAATTAAG ATAACTGCTGATGGAAATAATTACACGATTGATTTAAGTAAAAAGTTAAAATTAACTGAC ACAAACCGTTATGTTAAAAATCCTAAAAATGCACAAATTGAAGTCATACTCGAAAAATCT AACTAA Roary-3.8.0/t/data/group_9.fa000066400000000000000000000013311304207556500156730ustar00rootroot00000000000000>abc_00010 ATGACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTT AGTAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTG CTAGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTA CCTTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAA >abc_00010 ATGACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTT AGTAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTG CTAGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTA CCTTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAA >abc_00010 ATGACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTT AGTAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTG CTAGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTA CCTTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAA Roary-3.8.0/t/data/input_accessory_binary.fa000066400000000000000000000020571304207556500210730ustar00rootroot00000000000000>seq1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA >seq2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC >seq3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC >seq4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC >seq5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCC >seq6 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCC >seq7 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCC >seq8 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCC >seq9 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCCC >seq10 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCCCC Roary-3.8.0/t/data/input_block_spreadsheet.csv000066400000000000000000000241231304207556500214200ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","oneblock","oneblockrev","contigwithgaps","nocontigs","threeblocks","threeblocksinversion" "bcsC_1","","cellulose synthase subunit BcsC","9","9","1","11","5692","","","",,,,"oneblock_0031","oneblockrev_0020","contigwithgaps_0121","nocontigs_0331","threeblocks_0131","threeblocksinversion_0031" "betC_2","","sulfatase","9","9","1","11","1876","","","",,,,"oneblock_0012","oneblockrev_0039","contigwithgaps_0045","nocontigs_0122","threeblocks_0112","threeblocksinversion_0029" "comM_2","","putative ATP-dependent protease","9","9","1","11","6422","","","",,,,"oneblock_0050","oneblockrev_0001","contigwithgaps_0197","nocontigs_0540","threeblocks_0250","threeblocksinversion_0050" "dmsA4_1","","anaerobic dimethyl sulfoxide reductase subunit A","9","9","1","11","540","","","",,,,"oneblock_0001","oneblockrev_0050","contigwithgaps_0001","nocontigs_0001","threeblocks_0001","threeblocksinversion_0001" "dosC","","diguanylate cylase","9","9","1","11","909","","","",,,,"oneblock_0005","oneblockrev_0046","contigwithgaps_0017","nocontigs_0045","threeblocks_0005","threeblocksinversion_0005" "dsbA_3","","Thiol:disulfide interchange protein","9","9","1","11","1676","","","",,,,"oneblock_0009","oneblockrev_0042","contigwithgaps_0033","nocontigs_0089","threeblocks_0009","threeblocksinversion_0009" "fadH_1","","2 4-dienoyl-CoA reductase","9","9","1","11","5287","","","",,,,"oneblock_0029","oneblockrev_0022","contigwithgaps_0113","nocontigs_0309","threeblocks_0129","threeblocksinversion_0012" "fimD_3","","outer membrane usher protein FimD","9","9","1","11","1813","","","",,,,"oneblock_0011","oneblockrev_0040","contigwithgaps_0041","nocontigs_0111","threeblocks_0111","threeblocksinversion_0030" "fliB_2","","lysine-N-methylase","9","9","1","11","1159","","","",,,,"oneblock_0007","oneblockrev_0044","contigwithgaps_0025","nocontigs_0067","threeblocks_0007","threeblocksinversion_0007" "fliF","","flagellar MS-ring protein","9","9","1","11","1176","","","",,,,"oneblock_0008","oneblockrev_0043","contigwithgaps_0029","nocontigs_0078","threeblocks_0008","threeblocksinversion_0008" "ftsN","","cell division protein FtsN","9","9","1","11","6144","","","",,,,"oneblock_0047","oneblockrev_0004","contigwithgaps_0185","nocontigs_0507","threeblocks_0247","threeblocksinversion_0047" "gatY_1","","fructose-bisphosphate aldolase","9","9","1","11","5872","","","",,,,"oneblock_0039","oneblockrev_0012","contigwithgaps_0153","nocontigs_0419","threeblocks_0239","threeblocksinversion_0039" "glfT2","","glycosyltransferase cell wall biogenesis","9","9","1","11","4176","","","",,,,"oneblock_0022","oneblockrev_0029","contigwithgaps_0085","nocontigs_0232","threeblocks_0122","threeblocksinversion_0019" "group_1000","","membrane protein","9","9","1","11","593","","","",,,,"oneblock_0002","oneblockrev_0049","contigwithgaps_0005","nocontigs_0012","threeblocks_0002","threeblocksinversion_0002" "group_1001","","lipoprotein","9","9","1","11","597","","","",,,,"oneblock_0003","oneblockrev_0048","contigwithgaps_0009","nocontigs_0023","threeblocks_0003","threeblocksinversion_0003" "group_1004","","arylsulfate sulfotransferase","9","9","1","11","2834","","","",,,,"oneblock_0019","oneblockrev_0032","contigwithgaps_0073","nocontigs_0199","threeblocks_0119","threeblocksinversion_0022" "group_1006","","putative inner membrane protein","9","9","1","11","2791","","","",,,,"oneblock_0017","oneblockrev_0034","contigwithgaps_0065","nocontigs_0177","threeblocks_0117","threeblocksinversion_0024" "group_1009","","Phage-like protein","9","9","1","11","6416","","","",,,,"oneblock_0049","oneblockrev_0002","contigwithgaps_0193","nocontigs_0529","threeblocks_0249","threeblocksinversion_0049" "group_220","","putative glycosyl transferase","9","9","1","11","4174","","","",,,,"oneblock_0021","oneblockrev_0030","contigwithgaps_0081","nocontigs_0221","threeblocks_0121","threeblocksinversion_0020" 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ligase LigB","9","9","1","11","5819","","","",,,,"oneblock_0034","oneblockrev_0017","contigwithgaps_0133","nocontigs_0364","threeblocks_0234","threeblocksinversion_0034" "marT_1","","putative transcriptional regulator MarT","9","9","1","11","5849","","","",,,,"oneblock_0036","oneblockrev_0015","contigwithgaps_0141","nocontigs_0386","threeblocks_0236","threeblocksinversion_0036" "nepI","","inner membrane transport protein","9","9","1","11","5866","","","",,,,"oneblock_0038","oneblockrev_0013","contigwithgaps_0149","nocontigs_0408","threeblocks_0238","threeblocksinversion_0038" "rffH","","glucose-1-phosphate thymidylyltransferase","9","9","1","11","2778","","","",,,,"oneblock_0015","oneblockrev_0036","contigwithgaps_0057","nocontigs_0155","threeblocks_0115","threeblocksinversion_0026" "rpoS","","RNA polymerase sigma factor RpoS","9","9","1","11","4905","","","",,,,"oneblock_0028","oneblockrev_0023","contigwithgaps_0109","nocontigs_0298","threeblocks_0128","threeblocksinversion_0013" "SBOV29371","","putative cytoplasmic protein","9","9","1","11","4890","","","",,,,"oneblock_0027","oneblockrev_0024","contigwithgaps_0105","nocontigs_0287","threeblocks_0127","threeblocksinversion_0014" "SBOV38871","","integral membrane protein","9","9","1","11","5890","","","",,,,"oneblock_0040","oneblockrev_0011","contigwithgaps_0157","nocontigs_0430","threeblocks_0240","threeblocksinversion_0040" "SBOV43201","","putative cytoplasmic protein","9","9","1","11","611","","","",,,,"oneblock_0004","oneblockrev_0047","contigwithgaps_0013","nocontigs_0034","threeblocks_0004","threeblocksinversion_0004" "selA_1","","transferase","9","9","1","11","5858","","","",,,,"oneblock_0037","oneblockrev_0014","contigwithgaps_0145","nocontigs_0397","threeblocks_0237","threeblocksinversion_0037" "speC_3","","Ornithine decarboxylase inducible","9","9","1","11","4201","","","",,,,"oneblock_0024","oneblockrev_0027","contigwithgaps_0093","nocontigs_0254","threeblocks_0124","threeblocksinversion_0017" 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pinnipedialis B2/94 0.01 3 0 S 444163 Brucella microti 0.01 3 3 - 568815 Brucella microti CCM 4915 0.00 1 0 S 236 Brucella ovis 0.00 1 1 - 444178 Brucella ovis ATCC 25840 0.00 1 1 S 29461 Brucella suisRoary-3.8.0/t/data/kraken_test/000077500000000000000000000000001304207556500163135ustar00rootroot00000000000000Roary-3.8.0/t/data/kraken_test/database.idx000066400000000000000000000200201304207556500205570ustar00rootroot00000000000000KRAKIX2 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| synonym | 1239 | Clostridium group firmicutes | | synonym | 1239 | Firmacutes | | synonym | 1239 | Firmicutes | | scientific name | 1239 | Firmicutes corrig. Gibbons and Murray 1978 | | authority | 1239 | Gram positive bacteria | | misspelling | 1239 | Gram-positive bacteria | | genbank common name | 1239 | Low G+C firmicutes | | synonym | 1239 | clostridial firmicutes | | synonym | 1239 | firmicutes | firmicutes | blast name | 1239 | low G+C Gram-positive bacteria | | common name | 1239 | low GC Gram+ | low GC gram-positives | common name | 1279 | "Aurococcus" Winslow and Rogers 1906 | | authority | 1279 | Aurococcus | | synonym | 1279 | Staphylococcus | | scientific name | 1279 | Staphylococcus Rosenbach 1884 | | authority | 1280 | "Micrococcus aureus" (Rosenbach 1884) Zopf 1885 | | authority | 1280 | "Micrococcus pyogenes" Lehmann and Neumann 1896 | | authority | 1280 | "Staphlococcus pyogenes citreus" Passet 1885 | | authority | 1280 | "Staphylococcus pyogenes aureus" Rosenbach 1884 | | authority | 1280 | ATCC 12600 | | type material | 1280 | ATCC 12600-U | | type material | 1280 | CCM 885 | | type material | 1280 | CCUG 1800 | | type material | 1280 | CIP 65.8 | | type material | 1280 | DSM 20231 | | type material | 1280 | HAMBI 66 | | type material | 1280 | JCM 20624 | | type material | 1280 | Micrococcus aureus | | synonym | 1280 | Micrococcus pyogenes | | synonym | 1280 | NBRC 100910 | | type material | 1280 | NCAIM B.01065 | | type material | 1280 | NCCB 72047 | | type material | 1280 | NCTC 8532 | | type material | 1280 | Staphilococcus aureus | | misspelling | 1280 | Staphlococcus pyogenes citreus | | synonym | 1280 | Staphylococcus aureus | | scientific name | 1280 | Staphylococcus aureus Rosenbach 1884 | | authority | 1280 | Staphylococcus pyogenes aureus | | synonym | 1280 | Staphylococus aureus | | misspelling | 1280 | Streptococcus aureus | | misnomer | 1385 | Bacillales | | scientific name | 1385 | Bacillales Prevot 1953 | | authority | 1385 | Bacillus/Staphylococcus group | | synonym | 46170 | Staphylococcus aureus aureus | | equivalent name | 46170 | Staphylococcus aureus subsp. aureus | | scientific name | 46170 | Staphylococcus aureus subsp. aureus Rosenbach 1884 | | authority | 90964 | Staphylococcaceae | | scientific name | 90964 | Staphylococcaceae Schleifer and Bell 2010 | | authority | 90964 | Staphylococceae | | includes | 90964 | Staphylococceae Prevot 1940 | | includes | 90964 | Staphylococcus group | | synonym | 91061 | Bacilli | | scientific name | 91061 | Bacilli Ludwig et al. 2010 | | authority | 91061 | Bacillus/Lactobacillus/Streptococcus group | | synonym | 91061 | Firmibacteria | | synonym | 91061 | Firmibacteria Murray 1988 | | authority | 131567 | biota | | synonym | 131567 | cellular organisms | | scientific name | 663951 | Staphylococcus aureus subsp. aureus 0528 | | misspelling | 663951 | Staphylococcus aureus subsp. aureus 0582 | | synonym | 663951 | Staphylococcus aureus subsp. aureus TW20 | | scientific name | 663951 | Staphylococcus aureus subsp. aureus str. 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ACAAAACAAACCCCCCACCCCCCAACACACCCCCCCACCCAACCCCCACCCCCCCCCCACCCCAAAAAAACCCCCCCCCCACCAAAAACACAACCAACACCACCCAAACAAAAACACACACCACCACAACCAACCCCAAAAACCCAAACCACCACCAACCCCACCCCCCCCACACCCCCCCCCACCCCCAAAACCAACACAACACACCACACAACCAACCCACCACAACCCACCACAACCCCCAAACACCCCCACAACCCACCCCCACACCACCACCAAAAACACACCCCACCCCCCCCCCCCCCCCCAACCCCCCCCCCCCCCCCCCCCCCCAAAACCACAACCAAACACCCCCCCCAACACCACACCCAACCCCCCAACCCCCCCCCACAACCCACCCCCCCCCCCCCCCCCCACACCCCCCCCCCCCCCCCACCCACCCCACCCCCAACACAACAAAAACCCACCAAAAAAAAAAAAAAAAAAAAAACAAAAAAACAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAACCCCCCCCCCCCCCCCACCCAAAAAAACCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAACACCCCCCCAAAAAAAACCAAAACAACAAAAAACCAAAAAAAAAAACCCCCCCAAAAAAAAAAAAAAAAAACCACAAAAAACCCCCCCCCCCACCCCCCCCCCACCCCCCCCCCACCCAACCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCACCCAACCCCCCCCCCACCCCCCCCACCCCCCCCCCCCACCCCCCCCCCCCACCCAAAAAACAAACCCCCCACCAAAAAAACACCCCACACACCCCCCCAAACCCAAAAAAAAAAAAAAAAACACAACCACAAACCACCCAAAAACAACACAAAAACAACCAACCAACAACCAACAACAAACAAAAAAAAAAAAACAAACAAACACAAAACACAAAACAAACACAACAACAACAACCAACAACACAACACAAACAAACACAAAAAAACCACACAAAACACACCACAAACACACAAACAACACAACACACAACAACAACAACAAAAACCAACCACAACAACCAACCAACCCCCCACCCCCCCACCCCCCCCCCCCCACAACACCACCCCCCCCCCCCACCCCCCCCCCCAAACCCACAAAAAACCCCCCCCCCCCCAAAACAAAACAAAACAAACCCCCCCACAAAACCAAACAACACAACACCCAACAAACACACACAAACACCAACACCAAAAACCAAAACAACACACCCACAACAAAACACAAAAAAAAACACCACCCACCCAAAAAAAAAAAAAACAAACCAAAACAAACAAAACAAAAAACACCAAAAAACACAAAAAAAAACAAACCCAACCAAAAAAACACAACCCCCAACAACACCCCACACACACAACACCAACAAACAAACCACCAAAAAACAAAAAAACCAAAACAACCCAAAACACACACACAAACCCACCACAACAAAACCAAAAAAAAAAACAAAAAACCAACAAAACAAACAACAAAAAAAAACCAAAACAACACAAAAAAAACACAACAACACCAACCCAAACAAAAAAACCCCCAAACAACCACACCCAACACACAAAAAAACCAAACAAAAACAACCAACAACAAACAACAAAAAAACACCCCCAACACCAAAACCAAAACCAAACAACCCCCCCCACAACAAAAAAACACCCAACCACACCCCCCCACCACACACCCCCCCACAAAACCCCCCCCCCCCCCAAACCACCCCCCACACCCACCCCAAACACCCCCCAACCCCCCCCACCCCCCCCCACCCCCCCACCAACACCCCACCAAACAAAACAACCCCCCCCAAACACACAAAAAAAACACCCCCAAAACAAAAAAAACACAAACAAACCACACAAAACAAAAAAAAAAAACAACACCACAAAAAAAAAAACCCCACCCACACAAAACAAAACCCACAAAAACACCAAAAAACACAAAAAAAACCACCCACAAAAAAAAAAAAAAACCAAAAAACAAACCAAACAACCAACCAAAACAAAAAAAAACCAAAAAAAAAAACACCAAAAAAACACAAACACAACCCCCCCCAAACAAAAACAAACACAACAAACCAACAACCAAAACCAAACCAACAAACAAAAAAAAACCAAAAAAACAAACAACACACACCCCCAAAACACAACAAAAAACACACAACAAACCCAAAAAACCACAAAAACAACAAAACAAACCAACAAAAAAAAAAAACAACAAAAAAAACAAAAACACCACCACACCACAAAACAACAAACAAACCAAAAAAACACCCCAACACAAAAACAAAAAAACCCAAACCAACAACAAAAACAAAACAAAAAAACAAAAAAAAAAAAAAAACAAAAAAAACAAAAAAACACACAACAACAACAAACACACACAAACCCAAACCAAAAACAAACACAACAAAACAACCCACCCCACAAAAACACACAACAACAAACACCCCACACAAACACAACACCCAAACACACAACCCACCCCCCCAACACACAAAACCCACCCCAACACAACACAACCCCCACCCCACACCCACACACCCCCCCACCCCCCCCCCCCCCCAACCCCCCCCCCCCCCCCCCCCCCCCCCCACCCACCCCCCCCCCCCCACACCCACAACCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCAACCCCACCCAACACCCCACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAACCAACCCCAACACCACAAAAACCCACACCCACACAAACAAACCCACCCAAAACAAACAAAAAAAAAAACACAAAAACCCCCCCCCCCCCCAAACAAAAACAACACAAACCCCCCCCCCACAAAAAAACAAAAAAAAAAAAAAAAACAAAAAAAAAAACACCACAAAAACCAAAAACCCAACAAAAAAAAAAAACAAACAAAAAACCAAACAAACAAAAAAAAAAACAAAACAACAACACAAAAACCCCAACAACAACCACACAACAACAAACCAAACAAAAAAAAAACACCCACAAAAAAAAACACCAAACCAAAACCAAAACCAAACAAAAAAAAAACAACCCCCCCCAAAACCCCCCCCAAACCCCAACCCACCACCAAAAACAAAAACACAAAACACCCCAAACACCAACAAACCAACCCCCCCCCCCAAAAAACCAAAAAAAAAAAAAACAACAACAAACAAACCCCCCAAACACCAAAAACACCCCCCCAAACCCAAAAACAAAAAAAAACAACAAAACAAACAAACCACAAACCCCCCAAACCAAAAAAAAACAAAACAAAACAAAAAAAACAAAAAAAACACCACCCCAACAAACAAAAAACACAAAAAAACCAACAAACCACAAAAAAACAACCCAAAACAACAACCCAAAAAAAAAACCCCAAAACCAAAACCACACAACCAAACCAAAAAACCCCAAAAAAACCAAAAACAACACAACAAAACCAAAAAAACAACCAAAAAAACAAAACAAAACAACACAACCCCCCAAAAAAAAAAAAAAAAAAAACAAAAAACAACACAAAAACCAAAAAAAAAACAAAAAAAAACAAAAACAAAAAAAAAAAAACAACCCCCCACACAACACCCCCCCAACACACCAACAAAACAACCAAACAAAACAACCCCCCCACCAAAAAAAAACACAAAAACCACACACAACCCCAAAAACCAAAACCCCCCCCCCCCACAACCCACCCCCCCCCCCCCCCCACCCCCCCACCACCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCACCACCCCCCACCCCCCCCACACCCCCCCCCACCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCACCACACCCCAACCCCCCCCCCCCCCCCC 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ACCACACCACCCCCCCACCCCCCACACCCCCCACCCACACCACCCCCACCCCCCCCCCAAACAAACAAAACACACCACACACAAAAACCACAACCAACACCCCACAAACAAAACCACACCCCACCAACACCCCCACCCCAAACCCAAACAACAACCAACACCCCACCCACCACACCCCCCCCCACCCCCAAAACCAACACCACACACCACACACCCCACCAACACCAACCCACCACACACCCAAAACACACACACAACCCACCCCCCCACCACCACCCCCCACACCCACCACCCCCCCCCCCCCCCCCAACCCCCCCACCCCCCCCCCCCCAAACCACCACAACCAAACACCACCCCCAACACCACACCCAACCCCCCAACCCCCCCCCACAACCCACCCCCCCCCCCCCCCCCCACACCCCCCCCCCCCCCCCACCCACCCACAACCACAACACCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACAACACCCCACCCCCCCCCCAAAAAAAACCCCAACCCCCCCACACACCCAAAAACCAAAAAAAAAACAAAAAAAAAAAAAAAAAACCAAAAAAACAAAAAAAAAACAAACAAAAAACACAAAAAAACACCAAAAAAAACAAAAAAAAAAAACACAACAAACAAACAAACCCCCCAAAAAAAAAAAACACAAAAAACCAAAACCCCCAAACAACCAAAACCCCCCCCCCCACCCCCCCCCCACCCCCACCCCACCCAAAAAAAACAAAAAAAAACAACAAAAAAACAAAAAACCAAACAAAAAAAAAAACCCCCCCCCACCCCCCCCCCCCAAAAAAAAACAACCCAAAAAACAAACCCCCCCCCAAAAACCCACACCACAAACAAAAAAACCAACCCAAAAAAAAAAAAAAAAACACACACCAACCACCCAAACACACCACAAAAACAACCAACCAACAACCAACAACAAACAAAAAAAAAAAACCAAACAAACACAAAACACAAAACAAACACAACACAACAAACCAACAACACAACACAAACAAAAACCAAAAAACCACACAAAAAACACCACAAACACACACACAACACCACCAACACACAAAACACAAAAAACAAACAACACCAACCAAAAAACCCCCCCCACCCCCCCCCCCCCCCCCCACCAACACCACCACCCCCCCCCACCCCCCCCCCCAAAAAAACAAAACAACAACCCCCCCCCAAAAACAAACAAAACCAACCCCCCCACAAAACCAAACAACACAACACCACACAAACACACACAAAAACCAACACCCAAAAACAAACACCCCCCCCCAAAACAAAACAACAAAAAAAACACCCCCCAACCAAAAACAAAAAAAAACAACCCCCACAAACAAAAAAAAAAACACCAAAAAACACCAAAAAAAACAAACCCAACCAAAAAAACAAACCCCCCAACAACACCCAACACAAACAACACCAACAAAAAAACCACACAAAAACAACAAAACCAAAACAACCCAAAACACACACACAAACCAAACCAAACAAAACCAAAAACAAAAACAAAAAACCAAACCCCCAAAAAAAAAAAAAAAACCAAACCAACAACAAAAAAACACAACAACCACAACCCAAACAAAAACAACCCCAAACAACCACACCCAAAACACACAAAACAAAAAAAAACCAAACCAACAACAAACCAAAAACAAAACCACCCAACACCAACACCACAACCAACCAACCCCCCAAACAACAAAAAAACACCCAACCACACCCCCCCACCCCACCCCCCCCCCCACACACCCCCAACCCCCCCCCCCACCCCCCAACCAACCCCCACACACAAAACAACACCCCCCACCCCCCCCCCCACCACCACCCCCCCCCCACAAAACAAAACAAACCCCCCCAAACACAAAAAAAAAACACCCCCAAAACAAAAAAAACACAAACAAACCACACAAAACAAAAAAACAAAAAAACACCAAAAAAAAAAAAACCCCCCCCACACAAACCCCCCCCCACAAAAACACCAAAAAACAAAAAAAAAACCCCCCCCCCAAACAAAAAAAAACCAAAAAACAAACCAAACAACCAACCCCAACAAAAAAAAACCAAAAAAAAACACACCAAAAAAACACAAACACCACCACCAACAAACAAAAACAAACACAACAAACCAACAACAACAACCAAACCAACAAACAAAAAAAAACCAAAAAAACAAACAACACACAAAACCAAAACACAACAAAAAACCCAACACAAACCCAAAACACCAAAAAAACAACAAAACAAACCAAAAAAAAACAAAAACAAAAAAAAACACAAAACCCAAACCACACCACAAAACAACAAACAACACAAAAAAACACCCCACACAAAAACACAAAAAACCCAAACCAACAACAACAAAAAAACACAAAAACAAAAAAAACAAAAAAAAAAAAAAAACAAAAAAACACACAACAACCCCCCACACAACCAAACCCAAACCACAAACAAACACAACAAAAAAACCCAAACCACAAAAACACACACCAACCCACACCACACACAACACAAACACCCACACCCCCAACCCACCCCCCCAACACACACCCCCCCCCCCACCCCCCCCCCCCCCCCACCCCACACCCACCCCCCCCCCCACCCCCCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAAAACCCCCCACCCCACCCCCCACACACCCACCAAAACAACCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACACACCACCACCAACCACACACCCCCCCCCACCCCCCCCCCCCCACACCAACCCACACACCACCCCCCACCACACCCCCCACACAAAACAAAAACCAACAAAACAAAAAAAAAAACACAAAAACCCCCCCCCCCCCCAAACAAAAACAACACAAACCCCCCCCCCACAAAAAAACAAAAAAAAAAAAAAAAACAAAAAAAAAAACACCACAAAAACCAAAAACCCAACAAAAAAAAAAAACAAACAAAAAACCAAACAAACAAAAAAAAAAACAAAACAACCCCCCCCCCCCCCCAACAACAACCCAACAACAAAAAACCAAACCAAAAAAAAAACCCCCCAAAAAAAAACCCCAAACCAAAACAAAAACCAAACAAAACCAAAACAACCCCCCCCAAAACCCCCCCCAAACCCCAACCCACCACCAAAAACAAAAACACAAAACACCCCAAACACCAACAAACCAACCCCCCCCCCCAAAAAACCAAAAAAAAAAAAAACAACAACAAACAAACCCCCCAACAACCAAAAACACCCCCCCAAACCCAAAAACAAACAAAAACAACAAAACAAACAAACCACAAACCAAACAAACCAAAAAAAAACACAACAAAACAAAAAAAACACACAAAACACCACCCCAACACCCAAAAAACACAAAAAAACCAACAAACCACAAAAAAACAACCCAACACACAAACCCAAAAAAAAAACCCAAAAACCAAAACCACACAACCAAACCAAAAAACCCCAAAAAAACCAAAAACAACACAACAAAACCAAAAAAACAACCAAAAAAACAAAAAAAAACAAAACAACCCCCCAAAAAAAAAACCCCCCCAAACCAAAAACAACAAAAAAACCCAAAAAAAAAACCAAAACAACAAAAAAAAAAAAAAAAAAACCACCACCCACACAAAACCCCCCAAACAAACCAACACAACAACCAAACAAAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCACCCCCCACCCCCCCCCCCCCCCCACCCCCCCACCCCCCCCCCACCCCCCCCCCACCCACCACCCCCCCCCCCCCCCCACCCCCCCACCCCCCCACCCCCCCCCCCACCCCCCCCCCCCCCCCCACCCCCCCAAAAAAAAAACAACCCCACACCAACCCCCCACCCCCCCCCA Roary-3.8.0/t/data/locus_tag_gffs/000077500000000000000000000000001304207556500167665ustar00rootroot00000000000000Roary-3.8.0/t/data/locus_tag_gffs/query_1.gff000066400000000000000000000467201304207556500210500ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 gene=different;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=abc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=abc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=abc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=abc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=abc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=abc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/locus_tag_gffs/query_1.gff.proteome.faa.expected000066400000000000000000000063721304207556500252260ustar00rootroot00000000000000>abc_00001 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00003 MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYV SLKEH* >abc_00004 MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHF SFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQL WWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAR EALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD* >abc_00005 MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR QTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS N* >abc_00006 MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHF SLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEG YWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIR QTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKS N* >abc_00007 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTR CAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEN SGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMG MNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPD EVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVT DEVFESKASVVFQEAENRMHTIKAVMVATLGEF* >abc_00008 MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLN YAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPA FNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKN DTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINF NTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAA LEGKVGTVIKK* >abc_01705 VENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS* >abc_00010 MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGV PSEMIKDRQRKNNGV* >abc_00011 MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQ LNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKY LKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKA FPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLK EPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFF LKKENQDKFLRNASQ* >abc_00012 MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKKERSLDNMSLKNAELLYKFANSIFSN EN* >abc_00014 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF* >abc_00015 MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF* >abc_00016 LGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKL TKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYI VTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVG DSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR* Roary-3.8.0/t/data/locus_tag_gffs/query_2.gff000066400000000000000000000467451304207556500210600ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag="zzz_00001";product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag="zzz_00002";product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag="zzz_00003";product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag="zzz_00004";product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=zzz_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag="zzz_00006"";product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=zzz_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=zzz_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 inference=COORDINATES:profile:RNAmmer:1.2;locus_tag="zzz_01705";product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag="zzz_00010";product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag="zzz_00011";product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag="zzz_00012";product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag="zzz_00013";product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag="zzz_00014";product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag="zzz_00015";product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag="zzz_00016";product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/locus_tag_gffs/query_2.gff.proteome.faa.expected000066400000000000000000000063721304207556500252270ustar00rootroot00000000000000>zzz_00001 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >zzz_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >zzz_00003 MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYV SLKEH* >zzz_00004 MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHF SFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQL WWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAR EALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD* >zzz_00005 MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR QTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS N* >zzz_00006 MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHF SLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEG YWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIR QTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKS N* >zzz_00007 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTR CAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEN SGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMG MNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPD EVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVT DEVFESKASVVFQEAENRMHTIKAVMVATLGEF* >zzz_00008 MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLN YAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPA FNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKN DTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINF NTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAA LEGKVGTVIKK* >zzz_01705 VENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS* >zzz_00010 MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGV PSEMIKDRQRKNNGV* >zzz_00011 MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQ LNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKY LKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKA FPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLK EPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFF LKKENQDKFLRNASQ* >zzz_00012 MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKKERSLDNMSLKNAELLYKFANSIFSN EN* >zzz_00014 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF* >zzz_00015 MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF* >zzz_00016 LGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKL TKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYI VTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVG DSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR* Roary-3.8.0/t/data/locus_tag_gffs/query_3.gff000066400000000000000000000467121304207556500210530ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=xxx_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=xxx_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=xxx_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=xxx_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=xxx_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=xxx_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=xxx_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=xxx_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=xxx_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=xxx_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=xxx_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=xxx_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=xxx_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=xxx_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=xxx_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=xxx_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/locus_tag_gffs/query_3.gff.proteome.faa.expected000066400000000000000000000063721304207556500252300ustar00rootroot00000000000000>xxx_00001 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >xxx_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >xxx_00003 MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYV SLKEH* >xxx_00004 MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHF SFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQL WWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAR EALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD* >xxx_00005 MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR QTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS N* >xxx_00006 MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHF SLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEG YWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIR QTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKS N* >xxx_00007 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTR CAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEN SGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMG MNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPD EVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVT DEVFESKASVVFQEAENRMHTIKAVMVATLGEF* >xxx_00008 MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLN YAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPA FNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKN DTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINF NTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAA LEGKVGTVIKK* >xxx_01705 VENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS* >xxx_00010 MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGV PSEMIKDRQRKNNGV* >xxx_00011 MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQ LNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKY LKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKA FPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLK EPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFF LKKENQDKFLRNASQ* >xxx_00012 MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKKERSLDNMSLKNAELLYKFANSIFSN EN* >xxx_00014 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF* >xxx_00015 MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF* >xxx_00016 LGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKL TKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYI VTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVG DSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR* Roary-3.8.0/t/data/locus_tag_gffs/query_5.gff000066400000000000000000000472101304207556500210470ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=3_1;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=ccc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|ccc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID="ccc_50002";inference=ab initio prediction:Prodigal:2.60;locus_tag=ccc_00002;product=hypothetical protein;protein_id=gnl|SC|ccc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=ccc_50003;inference=ab initio prediction:Prodigal:2.60;locus_tag=ccc_00003;product=hypothetical protein;protein_id=gnl|SC|ccc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=ccc_50004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=ccc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|ccc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=3_2;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=ccc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|ccc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 ID="ccc_50006";inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=ccc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|ccc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 ID=3_3;eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=ccc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|ccc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 ID=ccc_50008;eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=ccc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|ccc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 ID=ccc_51705;inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=ccc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 ID=ccc_50010;inference=ab initio prediction:Prodigal:2.60;locus_tag=ccc_00010;product=hypothetical protein;protein_id=gnl|SC|ccc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 ID=ccc_50011;inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=ccc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|ccc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 ID=ccc_50012;inference=ab initio prediction:Prodigal:2.60;locus_tag=ccc_00012;product=hypothetical protein;protein_id=gnl|SC|ccc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 ID=ccc_50013;inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=ccc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 ID=ccc_50014;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=ccc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|ccc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 ID="ccc_50015";inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=ccc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|ccc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 ID=3_5;eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=ccc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|ccc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATTTTAAAAACTCCCCAAGCTGTAATTTAAGGGGGTTCTTTAAATTAT ATACCCACCACATTTTTTGGAGAACCCCAAACTAGCCGAAAAGGGGCATTTCTGAAGTTA ACGGCTAAAGTTATTTTTTATATTTCCCTGTCCATGAACAAAGGGGTTACATTAATTTGT AATTTCTTCTTTTTTTTAATCGATTCCCTATCTTTCTGAAGAGGGGTCTGTCCATTTATC ATTAGTATTGGTACTTTTCCAATTTCCCGAACTCCAATGCAAGGGGTAGTCATCACGAAC ACGTTCGTATATTATTTCTATATTTCCCTGTCGTTTGGATGCGGGGCTATCCATAGTAAT AACTGTAGCGAAGTTTTGTGAAAACCCCGAACATAATAGAGAGGGGGCTTTGTTAGGATC AAGGAAGTTCTCTGTTTCTTTCATACCCCCACTTCTAGTTTTGGGGAAAAGTTGATTGCC ATATACCGGGTTCCTTTAATCTCTACCCTATCGTCCCCAATTGGGGTTCACCATATTGTT AAATATCACTTTCCTTTCTACTTTTCCCTCACTTGGGCTCTCGGGGATTGTTTTGAAATC AGGTTGAACATATTTTTGTGTATGACCCATCCAAACATTTGCGGGGATAAGGCCGCCAAT ATTTCCTGTATCATTTTCAGTAACACCCCCGCTGAATCCATAGGGGAAAGTACTCATATA ATCTTTTGTATCAATTTAATTTCTTCCCTAGCAATCAGATATGGGGGCTACTTCATTATC AGGTAGTTGCAACTTTTCCTTAAAGCCCGAACGCCAGGCTAAGGGGCTTTTGTTAGCACC ATCTTCGCTATAAATTTTATATTGACCCGCACTGGTACCTTTGGGGCTAATAACTAGCAG ATTTTTATTGTGATTTTTATCATCGCCCAAACTATAAAATACGGGGTTGTGCATGCCATT ATCTTTATCATAAGTTTCTAAATCACCCGTTCTTACTGTAGTGGGGCTTCCAATATCTGT AGTACCGGTTTTAATTTTAATATCACCCTCTCCGGCATTAGCGGGGGGATTCATTAATAT AGAACCTAGCAATATTTTTGTTGTTCCCGAGCTGACTATACGGGGGTTCATTTTCATCAT ACTTCTATTTTTTTTTTCGATTTGACCCAACCATAATCAATAGGGGAATTTAGAATATTG AAGTTGAGACATATTTTATATTTATCCCCGTCTATATTAGTAGGGGTAATGTAGCAACTG ATAAATTACTGAGTTTTGATGAGTGCCCATTCTAAGAATATGGGGGTAACTTTTATTTAA AATTTGAAAGGAAGTTTTTCAATTTCCCGGGCTAGTCAAAGTGGGGTAAATTCTTTATGA AACAAGGAAAAGACTTTGCTAATTTCCCTGACTAATTTCTTTGGGGCTAATGATTTGTTT AATTTAAAAATGTATTTGATTACAACCCAAACATACAAATATGGGGGAATTAAATCAATT AATTAACTATTAAATTTAAATTAAACCCATACTAACTACTGTGGGGTAATAAATAGAAAT AGAGAAAAAGGGTATTTATTATGTTCCCAATCTCGTCGGGAAGGGGTTTTGCCATTACAT AGAAATATCTAATATTTAATGAAAACCCATCCTATGTATTTTGGGGATAGTGTAAAATAT AATATGTAAAATAATTTGTAGATTTCCCGTTCGAGGCATTATGGGGAAATTTTGAGTATA AGTTAGCTTTTAATTTTGAATCTTACCCAAACTTGATTAATAGGGGTATGATAGGGGATT AAAATGAAACTATTTTTTATCGTATCCCTTACTATTATATGGGGGGATATATTTTTAGGA AATGAAATTATCCATTTACTGACTGCCCTAACAACAACATTGGGGGTTGTTAATTCAAGA AAGGGGATTAAAAATTTCAGAGTTGCCCAATCTTATAAACTCGGGGCAATCTTTGTTTGA ATCTGAATCAGGCTTTTAAATTTCGCCCAATCCAGGAGTTCCGGGGCAAACAGTACAAGA ATTAAGAAATGGGATTTCCAAACTACCCGATCCTAGATTTAGGGGGATTATTAAACTTTA AAGTTACTATGTCTTTTTAAAAGAACCCTAACCATGGGACAAGGGGGTATTGCTATAATA ATTGAATCATTAAATTTAGGAATAGCCCCTACGACATAATAAGGGGATGTCTTAGGCTCT ACAATATTATATTGTTTGTAGTTGACCCAATCAAAATGACCAGGGGACAAGCATTTTTGG AGCCCCAACACAGATTTTGACGAAACCCCAGCTTACAATAATGGGGAAGTTGGGGATGGG ACCCAACACAGAGATTTTCAAAAAGCCCTTCCACAGACAATGGGGGTTGGCGGGGCCCCA ACATAGAGAAATTCTTTAAGAAATTCCCCAGCCAATGCAAGTGGGGGAGTGACAACGAAA AAAATTTTATAAAATTTCATTTCTGCCCCATCCCTACTCCCAGGGGCATTTAAATATATA AAAAATTTCACCTATTTTATACATCCCCCACCTTAAAAATTAGGGGTTAAATAATCTGAT ATGGAATTAAAGTGTTTGAAGTATACCCCACCTTCATATACTGGGGAAAGAGGACGTCAA AAGTTATTTTATTATTTTTTTTAACCCCAACCTTTGCTAGATGGGGATGTAATCTTTTGC ATAAATCAATAGTGTTTTTATTACCCCCACCCGTGATCTTAAGGGGACCTTTATTACGAT ATTCGGTATATAATTTTTTATTTTTCCCTAACGCTTCTCGTGGGGGGAAATCGATTTCTT ACAATGTTAATACTTTTTTATTGCCCCCGTACATTTTATGCGGGGGAATAATCGTTTGTA ATTTATCTTTGTATTTTACAAAAAGCCCATACGTTTTATCAGGGGGTTTTGCGGCTGGTG AAACGCCACCTGTATTTGTCTCTCTCCCAGACCACCATAACTGGGGAGTATCTTTGTCTT ATAGTCCAAACACATTTACGTAACGCCCTTTCAACTGATTAAGGGGTCCCCAACTTTCAG AGCCCCATAAAGATTTTTGTGCTGACCCTGACTATCTCTTAAGGGGAACATAAATGTTTC AATTATCATATTGATTTAGCCATTTCCCTGACAATGAAAAATGGGGCTGTGTGTAATATT AAATTAATTCATTGTTTTTAGTTTCCCCTTGCCCAATGCTATGGGGTTTAGCTTCAGAGT AAAAACTAAATACTTTTTTTTGATTCCCAGGCAATACAGTACGGGGTAGTAATAATGTTG ACGTTAAAATTATATTTTTCGTGATCCCCTTCCTCATTAGAAGGGGTCCTTTCAGAGGAA ACATGATACGAGGATTTAGAAATTTCCCTGTCAGCGAAGTCAGGGGAGTATTTGCGATTA ATTTTATTAACTCCTTTATTATTGTCCCTTTCATTTTTCGAGGGGGACTTCAATTTTTGC ATTTTGAGGTTTTTTTTCATATCTACCCGCACCAGTTGATGGGGGGCTTTTACTTAAATC AATTGTGTAGTTATTTTCTGTACCTCCCATTCTAATTTGTCCGGGGTTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATCCCTGACGAATACGAAAGGGGAATTCTTTTAAAGT AAAAACAGGCTTATTTTCTTCATAACCCGGACATCCGCCAGTGGGGGTTTCTGCTTTATC ATTATATGTTACATTTTGTTTATAGCCCTTACCGTTAGATGTGGGGGCAGGAGTAACACC ACCAGTAAACGTTTTTTGAGATAATCCCAAACAATCAATGGTGGGGTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTCCCTGGCTGATATTGCCGGGGCTTTCAGGTCCATA AACTTGAATATGACTTTACCAAGAACCCTGTCACAACGTTGCGGGGATCGTACCGTTATC ATTTTGCCATAACGTTTTGTTAGAGCCCGTTCAATATTTTTGGGGGTAATATTTAGTTAA ATCATTAACGTTAGTTTCGTTTTGACCCATACAATAAGCTTTGGGGTCAGATGAAGAATT AATAGGTGTATTAGTTTATTGTGTACCCGCTCTACCTAATAGGGGGAATGTTGTTGATAA AATAATTTTTTTCGTTTTGTTATTGCCCATTCGAATTTCTCCGGGGAGTATTGTTGGAAT ATTTAATTATAAAATTTGGTTAATTCCCTAACTGAAATTATCGGGGTTTACAAAAGGTAA AAGGTTAGTTAGATTTTTCGAGTATCCCTTCCATTTGTGCATGGGGAGGATTTTTAACAT AACGGTTTGTGTCATTTAATTTTAACCCTTTCCTTAAATCAAGGGGGTAATTATTTCCAT AAGCAGTTATCTTATTTTGACCTTTCCCAAACTCTCCGTTATGGGGCTTTTTATTCTTTA ATAATGTTTGACGATTTCGGAAATCCCCTTCCTTTAAAGTTAGGGGTGGTTTATTTCCTT AGTAAAATTCATGTTTTCCGATGATCCCTTGCTGTTTATCACGGGGTTTTAAAAATAGTC AATAAGGTTTATCATTTGAAGTAGCCCCTGGCGTAACACCACGGGGAAATGTTTCATCAT AAGTCCAGTAACCTTTTACTGTGTCCCCATCCTTAGTTCCAAGGGGATCAACGTATTTAT ATCTTAACTGATTATTTTTTCCCCACCCCTCCGATCCAAACAGGGGAATATGACTATACC AAACCCACGTTTGCTTTGTTGCATGCCCGCTCCCATTGGGCTGGGGCCATAGCCATTTTC AAGATAATGAAAAATTTGGCTGAGTCCCATACTTGATTAACTGGGGGATATTAGTCTCGT ATTCACTGATATTATTTGCTTTTGCCCCAGACGAAAAACTGAGGGGTGTTTTAGGAAGTT ATGTTGATGTGGTTTTTAAAAGTAACCCTGCCGTTGATAAAAGGGGTTTATTCATGATGT ACTTTTTCATATGATTTTCTCCTTTCCCTGACTTACCCAAAGGGGGTAAGCTATTACACC AATTCGGAATTAAATTTAAGCTAAACCCATGCTAAATAAACTGGGGCAGTTAGTAGTGTT ATTTAAGCAAAACTTTTCATTTTTACCCTTTCGACAGAAACAGGGGTTAATAAAGTAGGC AGGAGTTATATATTTTTAACGACACCCCACACTTATTCTCTAGGGGATTGCATTAAATTG ATTGATAATTGAATTTTCTAACTACCCCAAACATAGTTATACGGGGAATGTAGTACTTAT ATTAATTATTTCCTTTTACTTAAATCCCATACTAATAAAATGGGGGTTTAATTATTGATA AAATATTACAAATTTTTATAGTAGGCCCTGTCTATTTTGTATGGGGTTACAATTTAGGTG AAACTAAAATAAAATTTGTTGTTATCCCTGACAAATTTACGAGGGGGAAGTTTTTTAACT ATATTAGACTTTTCTTTACAAGAGGCCCAATCCTTATTAACAGGGGCCGAGGATTTAAAA AGTGCTAAATATATTTTCACTGAAACCCCTACGTTAAAAAATGGGGATATTGCACTGTTA ATTGAAAAAGATTCTTTAAGAACGCCCCGTGCATTTGAAGTTGGGGCGCATGATCAAGGT ACAAATGTAACTTATTTAGGCCCAACCCGATCACAAATGGGTGGGGAAGAAACAACTAAA AATACTGCACGTGTTTTTGGTGGAACCCATGCTGGCATTGAAGGGGGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAACCCCAGCCGTACCAGTGGGGGATGGTTTAACTGAT AAAGATCATCCTACTTTAGTTCTTGCCCATTCCTTAACAGCAGGGGAAGTCTTAAAAAAA AATTATGCAGATATTTTCTTTACATCCCTTGCAGATGGTCGTGGGGACGTTGCAAATGCA ATAATGCAAGGTGCTTTCATTATGGCCCTGACCTTCCATTTAGGGGGTCCAAAAGAATTA AATCCAACAGATGATTTATTAAATCCCCGTACAAATATTGCCGGGGAAAATGGTGGCAAC ATATTAATCACAGATTTTATTGACCCCCGTGCAAAAGGTTCGGGGGTAATTTACACTGAT ATTTGGGTATCAATTTTTGAACCTGCCCAAGCATGGAAAGAAGGGGTTGAATTATTGAAA ACATATCAAGTAAATTTAGAAATGACCCATACAACTGGTAATGGGGATGTTATTTTTGAG AATTGCTTACCATCTTTCCATAATGCCCATACGAAAATTGGTGGGGAAATTTTTGAAAAA AATGGTATTCGAGATTTGGAAGTTACCCATGCAGTATTCGAAGGGGAAGCTTCAGTTGTA ATCCAAGAAGCTGATTTCAGAATGCCCCCAACCAAAGCAGTCGGGGTTGCTACATTGGGT AAATTTTAAATGATTTTAGGAAGTGCCCATGCTGGCGAAAATGGGGGTAGCATTAGGTGG AAATGCTTTAGGAATTTCACCTCAACCCCAACTCGAGCTTGTGGGGAATACTGCGAAATC ATTAGTAGGATTAATTTCAAAAGGACCCGAGCTTGTTATTAGGGGGGGTAATGGACCACA AGTTGGAAGCATTATTTTGGGACTTCCCTATCCTGCAGAACAGGGGCAAGGTCCGGCATT ACCATTTGCTGAATTTTGCGCAATGCCCCAACCTTACATCGGGGGGCAATTACAAGAAAG ATTACAAAATGAATTTTATTCTATTCCCATGCATAAACAAGTGGGGACACTAGTGACACA AGTTGAAGTTGATGTTTATGATCCGCCCTTTCACAATCCTTCGGGGCCAATTGGGTTATT ATACAACAAAGAAGTTTCTGAACAACCCCAACAAGAAAAAGGGGGGATATTTGTTGAAGA AGCTGGAAGAGGATTTTGACGCGTTCCCCCTCCACCACAACCGGGGTCTATTATTGAATT AGAGAGTATTAAAATTTTTATTAAACCCGATCCACTCGTTATGGGGGCTGGTGGTGGAGG AATACCAGTAATTATTTAGCAACATCCCGGTCTTAAAGGTATGGGGGCAGTTATAGACAA AGATAAAACAAGTGTTTTGTTGGGTCCCAATCTTCAATGCGAGGGGTTGATTATTTTAAC AGCAATTGATTATGTTTATATTAATCCCAACCCTGAAAACCAGGGGCCTTTGAAAACAAC AAATGTTGATGAATTTTAACGATATCCCGACCAAAATCAATTGGGGAAAGGAAGTATGTT ACCAAAAATTGAAGTTTCCATATCACCCATTCAAAACAATCCGGGGGGAAGTGTGCTTAT AACATCATTAAATGTTTTAGATGCTCCCTTACAGGGTAAAGTGGGGACTGTGATTAAAAA ATAATTGAATTGAATTTCTTTTCAACCCCTACATGTCAAATGGGGGATTTTTATTATTTA AGTGCACCCCCTGATTTTAATGCCTCCCTTTCGATGCGGGGTGGGGTTTCTTAATTTATA ATTATAAAATCTTTTTTGTAGAAATCCCAGGCTAAATGTCGAGGGGGATGAAACCGTGGA AAATACAATTAATGTTTGTGAAAAGCCCAAACGATTTAAATTGGGGATGCCAGGTGCATT AATGATTTTATTCATTTTAACGGTTCCCGCACTTATAGCAACGGGGGTTATTCCTGCTGG AGCATATTCTAAACTTTCTTACGAACCCTCACCCCAAGAACTGGGGATAGTTAACCCTCA AAACCAAGTGAAAATTTTTCCGGGTCCCCAACAGGAACTAGAGGGGATGGGGGTTAAAAT AAAGATTGAACAATTTTAATCAGGTCCCATTCATAAGCCAGTGGGGATTCCGAATACTTA AGAAAGATTAAAGCTTTATCCAGCTCCCCCACAACAAATAACGGGGAGCATGGTTGAAGG AACGATAGAAGCGGTTTATATCATGCCCTTCCTTCTTGTACTGGGGGGACTTATTGGCGT AGTTCAAGCCAGTGTTTCTTTTGAACCCGGACTGTTAGCTTTGGGGAAGAAAACAAAAGG ACATGAATTTATGCTTTTTGTGTTTCCCTCACTACTAATGATGGGGGGCGGGACGTTATG AGGTATTGAAGAAGTTTCTGTAGCACCCTATCCGATTTTAGTGGGGATATTTATAGCGTT AGGATACGATTCTATTTTTTCAGTTCCCGCCCTATTCCTTGCGGGGTCTGTCGGTAGTAC ATTTTCAACTATTATTTCGTTCTCGCCCGTACTTGCCTCTAAGGGGGCTGGTACAACTTT AACGGATGGCTTGTTTTGGAGAATACCCGCTCGTATTGTCGGGGGGATTTTTGTTATTAG ATATTTATATTGGTTTTGTAAAAAACCCAAACACGATCCTAAGGGGTCATATTCTTATGA AGACAAAGATGCTTTTTAACAGCAACCCTCTCTATTAAAAGAGGGGGATAGTGCCCATTT AACTTTGCGTAAGATTTTAATCCTTCCCTTACTTGTACTACCGGGGCCAATTATGGTATG AGGAGTTATGACGCTTTGTTGGTGGCCCCCACTTATGGCTTCGGGGTTTTTAATATTTAC AATTATAATAATGTTTTTTGCTGGGCCCGGTCAATCTGGATTGGGGGAAAAAGGAACTGT AGATGCATTTGTCATTTGTGCATCACCCTTACTAGGTGTATCGGGGATTATTGGTTTAGC ACGAGGTATTAATTTTTTGTTGAATCCCGGTCTGATTTCAGAGGGGATCTTACACTTTTC ATCATCTTTAGTTCTTTATATGAGTCCCCCACTATTTATCATGGGGTTACTATTTATTTT ATTCTGTTTAGGTTTTTTCGTGCCACCCTCTCCTGGATTAGCGGGGTTATCAATGCCTAT ATTTGCACCACTAGTTTATACAGTACCCATACCAAGATTCGTGGGGGTTACGACATATCA ATTTGGTCAATATGTTTTGTTATTCCCCGCGCCGACTGGACTGGGGATGGCCACACTACA AATGTTAAACATGCTTTATTCACATCCCTTCCGATTTGTATGGGGGGTAGTTGCTTTTGT ATTGATTTTCGGTGTTTGAGTACTACCCACGCAAGTACTAATGGGGTCATAATTTGAAAT ACTATATTATAAAATTTCTAATTGGCCCTTACGCATCTCGTAGGGGTGTAGAAATACTAA ACTAAGCGAGGTGCTTTATTATTTTCCCTTACGAAAATAATGGGGGTAATGATAACACTA ATAAGTAATTGATATTTTGCTCTATCCCATACTGATATTTTTGGGGTTTGTTTTTAATGT AATGTTAGATCTATTTTATATTATACCCATCCTGGTAAATATGGGGTTGCTGTAAACAGT ATTTGTAACACATGTTTCATATGGTCCCGAACATAGCATATAGGGGGGATGGCTATAAAT AACACATTTGACAATTTTTTTAGATCCCCTACCTGGAATATGGGGGGTATTATTATTTAG AAAATATTTTGTGGTTTATGCAAATCCCGTGCTTGATTGGAAGGGGAGATGGTATTTGCT AGAAAACATACCACTTTTGCCAATTCCCTTACTTATTCTGATGGGGATTTTCGGAGTACC ATCTGAAATGATAATTTATAGGCAACCCAAACATAACGGTGTGGGGTTTATCGATATTTA AAGGTGATAAAATTTTTCAACTATTCCCAAGCCTAAAATAAAGGGGTTTATTAATTATTT AATTGGTATATTAGTTTTGGCGTTTCCCGCTCATATATTATTGGGGTAAAGGTTAGAGTG AAACGTGTTTATGATTTAGACGTTCCCCTATCGTTACTACAGGGGGAGTCAGAAGGTATC ATTGATAAGATCATTTTAAATCAAACCCGCACTGATATACACGGGGAAGAGGCAAGATTA ACTGCCTCTTTTTTTTTTATTAAATCCCCGTCTTAATTCTTGGGGGTAGTGTTACTGAGA AGCATTACGAAGAATTTTATCTTGACCCTCCCTTTTTAAAAAGGGGTGAAGATATCCTAT AAAGACTCTAAGTATTTTTACAGTGCCCAATCACACTTCGATGGGGAAAAGACCTTTCCA AATATCTGGAAACATTTGTACAGGCCCCCTGCTCTTTAAAGCGGGGGCTGAGATTACTAA AGGGAATGTGAAAGTTTAAAATACGCCCGAACAAGGTTCTTTGGGGAATTTAGGCAATTG AATAATGATATAAATTTAAAATATTCCCGCTCATATTAAAAAGGGGATTACGATAAAAGC ATTCGCCTTAGGAATTTCTATAACACCCGCTCCAGCGACTAAGGGGAATGGTGCACAAAT AGTCGATGTGTTCGTTTTGATTGACCCCTGCCATGGAAATGCGGGGAATCGCTTGAAAAC AATAGGTAAGACAATTTAAGTAGCTCCCAAGCCATATATTACGGGGAATTGACCTATGAA AAAACATCCGCTAATTTGTGCCGTCCCCCCTCCGATAGCAATGGGGATAAAAAGTACAGT ACACGAAGGATAAATTTTTTCAAGTCCCAAACCTTTTAAATAGGGGATTGAAAAAATAAT AATATGCGTCATAATTTCCACAAGGCCCAAACTCCAAATAGGGGGGATTAAGCTATTGAT AAAAGTTATGTTACTTTAAAATGTACCCAAACAAGTAGTACCGGGGAAGCCAGACATGAA AAATGTTGTGAACATTTATGAAACTCCCGGACTGTTTAATTGGGGGTTCACATTATTAAA ATATTTGATCATAGTTTATAAAAGGCCCATCCAAATCAAGAAGGGGAAGATTCCGCAAAC AGCGTTTAAAGTAATTTATAAGTCTCCCAATCGATTACCCAGGGGGAATAATCCTAAGAC AAGTCCTGACGTTATTTGAGGTGCTCCCTGACGTCTCATGATGGGGAACCTTTCTTATGT AATTTTCTTCACTATTTATATCATGCCCGCTCTGGCCAATTAGGGGGAAGAGTGTGTACT ATTACGTTATTAGATTTTGTATATTCCCTTGCTAGACACATAGGGGACATTTAAATCTCA AAATTAATGATATTTTTGGTATGCTCCCCAACCTAAATATTGGGGGATGTGGAAAAGTAA ATATTTAATTTAAATTTTGATTGAACCCTTACAAGGGGGTGTGGGGAATGAGAAATCAAA ATCAAAAACTATTATTTAGTGATTTCCCCAGCTTACATATATGGGGACAAACAGGAGTTC AACAAAGCACAATATTTAGAATGAGCCCAAACGAAAGATCATGGGGCAATATGTCATTGA AAAACGCTGAACTATTTTATAAATTCCCCAACAGTATATTTAGGGGTGAAAATTAAGAAG AATAATTAGTGAGTTTTATAATTAACCCACCCCGTCTCGATGGGGGTGGTTATTTTTTTA AATGTATTTAATTATTTGATTTCGGCCCCCTCAAAAGTCCCTGGGGTTTTGAATAGTATC AAAATCTATAGGAATTTTATAATAACCCAAACCTCTACGCATGGGGATGGTGAGTGTTAA AAATCTTGGTGTAGTTTTGGTGTAGCCCAGGCGCAGTATAGAGGGGATTTGAGCACAAAA ATACTTAATTAAAATTTTATAAACACCCGTCCGACGCGTGTCGGGGGTGTGTCAAAAAAT ACTATGACGAATAATTTTGCTTGTTCCCATTCCTGTATTTTCGGGGCTTATGCGGGGGAC ATTTTGGTGACGCATTTTACTATATCCCTGACATTCAAAACAGGGGGAGCCCCGTAATCA AGGAACTCTTTTGTTTTGTAATGCGCCCAAACATACCTATAAGGGGCCTGGGAGGGATTC AAACCCCCGACCGATTTCTTAGAAGCCCATTCCTCTATCCAGGGGGGCTACCAGGACACG ATTAACAACACAAGTTTTATTATATCCCAATCAACTTAAATTGGGGATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTCCCGAGCTATTTATCTAGGGGGGTTCAATAAGACT AAAATGCGAATTCATTTAACTTAATCCCGTTCAATACAGTTTGGGGTGCCTAACTGTATT ACTTTTCTCTTTAATTTACAGTTAACCCCATCATAAGATGTTGGGGGGATAAACAAACTA ATTGCATCAAATTTTTTTTAAAATACCCACACCAAAACGTTAGGGGAATAACATTTCGGT AATTTAAAAGCTACTTTCGTTTTTGCCCTCTCCAAATTTAAAGGGGAAGGAGTGTTTTCA ATGGAAGGTTTATTTTTCGCAATTACCCATACCGTAACTGCAGGGGTTAATAATGATGGC ACAAAATTAGGCACTTTCATTGTGACCCTCGCTGAAAATGGCGGGGGTTTATTAGGTAAA ATATTCGGATTCTATTTTCAATATGCCCTGTCAGTAATCAGTGGGGTTTCAAAGGTGAGG AAGAGATTTAAATGTTTGGACTAGCCCCAGCCATCGCAAATAGGGGGCAAGCTGCACAAC AACATGATAGTGTGTTTTTAGGCACCCCTATCGTAGACATCGGGGGTAACGGTGTGGGTT AACTAGGTAAATTATTTGGATTCTACCCTAACAACTAATATTGGGGAAAATAAACTGGGT AAGCATACTTTAATTTTATGCACTCCCCTTACTTTATTTGCAGGGGTTTGAGCCTCTGTT AAGATTTAGATACATTTACAATATACCCGATCGGGAAATTGGGGGGTAAAAATATTTTGA AAGACTTTGATGATTTTATTGTTGACCCTTACGATGCAGAAGGGGGGGCGTTTCACTATA AGGCGAATGTTTTTTTTCATAAAGCCCCAAACGATGATTTTTGGGGATTTAAAAAAATCA ATCACCAACATTGGTTTGCTTTTCACCCAAACAAATTAACGAGGGGTGAAGTATTATCAG AACGATTTGTGAATTTTTTCAAACACCCTCACATGGAAGTTGGGGGGCATCGTGCAGATG AGTTATTTAGAAATTTTTTAGCAGACCCTAACGTTAAATACTGGGGTCAAACATTAGAAA AAATTGTCGAATTATTTAAAAGACACCCTTTCTATATTGTTAGGGGTGGTGTAACCGAAA AGCAAAAGAGAAGGTTTAATCAGACCCCGTTCCATAAATATAGGGGAAAGATATTTATAT ATGAGGAAACAGGATTTCAAAAACCCCCTCCCGAATTTTTTAGGGGTGTTTTTAATGATA ATGGTGAGGATGAATTTCAGCACTCCCCTATCGTTGGAGATTGGGGAACATCTGACATTC AAGGTGGAATCAATTTTGGTATAGCCCCTTGCTGGTTTAATTGGGGAGGATTTGATCATA ATCCAGGAATTATATTTGATTATGACCCTAACTCATGGAAACGGGGAAATGATATTGTAC ATTAAGACAAATAATTTGAAAATGACCCATACTAGCTTAAGAGGGGAATTGTAAAAACGA AACTACGAAAAGATTTTTTTTCATGCCCGTACTGTCGAATATGGGGATCTTATGGTTTCC ACAATAAGACATCATTTCCCTCTATCCCTTTCGCTTCCACATGGGGAAATCCATGATGTA AAAAGAAATCCTTATTTTCATTTCTCCCAATCGCTTTAATTGGGGGATTGAAACTCTTTG AAAAATCAATCAATTTTGAAGCGTACCCTCTCTTTTGATATTGGGGTAATACTTCTAACT ACCATAATAATATATTTTCTTCAAACCCTGGCAAGTAGATTTGGGGGACATCACCTTTTT ATAGTAATGCCATTTTTGCTCCTAACCCATCCCCGACAAATAGGGGATAAAATGGTGAAT ATGAACTTGCATCATTTATTTGACCCCCTAACTCATTGACCAGGGGTAAGTCTTTGTTGC AAAACGCTCTAAAGTTTTCGAATAACCCGTCCGTTTTGTAATGGGGTTCAAGACGTTTGA ATTCACTCATATTTTTTTACCCCTTCCCTGTCTACTACTATTGGGGTACATTAAACCACT AGTGTTTTTCATTGTTTTGAAAATGCCCAACCATGAACATTAGGGGTTTTCCATGATTAA ATTGATTTTCAAGCTTTAAAATTGTCCCTCACCGGTATAGACGGGGTACTATAGTTTGTA ATCGCGTACTTAAGTTTAAAAAACACCCACTCTAAAGTAGTTGGGGTAAATGAAAAAGAT AAGTTTATACCAAATTTAAAGAGCACCCACCCTGTAATAACAGGGGTATTTCAATATGAT ACAGCTCAACAAACTTTTTTTGAAACCCGGACGTCTAAAGAAGGGGATGGAAGAGAAGCG ACATTAGCGAATGTTTTTCGTGAATCCCTGACTGATTTAAAGGGGGCAAATGAACAAGAA ATAAACATACAACATTTAGCTAATGCCCCAACAGTTGTGATTGGGGGACAACAAGCAGGG ATTTTCGGGGGACCTTTGTATACATCCCATACAATATTTTCAGGGGTTACTTTATCTAAG AAATTAACGGATACTTTTAAGCAACCCCTAGCACCAGTTTTTGGGGTTGCAGGAGAAGAT AATGATTTCGATGATTTGAATCATACCCTTGCTTATAACGAAGGGGATGGGTCGCTGCAT AAGGTTAAATATCATTTAATGGAGACCCCAGCGACGACAGTCGGGGGATATTATCCTGAT AAGGCTGAGTTGAATTTAACTTTAACCCCGACGTTCATTCATGGGGAAGAAACTGTTCAT ACACAAGGTCTACTTTTGATTTGTGCCCGAACTATTGACCAAGGGGACTCGTGGACTGAT ATGTTTAAAGCACTTTTGCATGAAACCCTTACAGCATATGGCGGGGTATTTATAGATGCG AAGTTTGAGCCGTTTTTAAAAATGGCCCCGCCTATGTTTAAAGGGGTTTTGAAAAAACAT AAGTTGCTTGATGATTTTTTTAGAGCCCCACCACAACGTACTGGGGATCAAGGCTTGAAT ACGATGATACAAACTTTTACAAATGCCCATTCATTCTTACATGGGGAAAATATGCGCCAA ATAGTTTCGTATGATTTTAAGCATTCCCAATCAAATAAAACAGGGGAGACATATATAAAGRoary-3.8.0/t/data/locus_tag_gffs/query_5.gff.proteome.faa.expected000066400000000000000000000063421304207556500252270ustar00rootroot00000000000000>3_1 MNPRIVSSGTTKILLGSILMNPPANAGEGDIKIKTGTTDIGSPTTVRTGDLETYDKDNGM HNPVFYSLGDDKNHNKNLLVISPKGTSAGQYKIYSEDGANKSPLAWRSGFKEKLQLPDNE VAPISDC*GRN*IDTKDYMSTFPYGFSGGVTENDTGNIGGLIPANVWMGHTQKYVQPDFK TIPESPSEGKVERKVIFNNMVNPNWGR*GRD*RNPVYGNQLFPKTRSGGMKETENFLDPN KAPSLLCSGFSQNFATVITMDSPASKRQGNIEIIYERVRDDYPLHWSSGNWKSTNTNDKW TDPSSER*GID*KKEEITN* >ccc_50002 MKLFFIVSLTIIWGDIFLGNEIIHLLTALTTTLGVVNSRKGIKNFRVAQ >ccc_50003 ISELPNLINSGQSLFESESGF*ISPNPGVPGQTVQELRNGISKLPDPRFRGIIKL*SYYV FLKEP* >ccc_50004 MRKGITKNIILTSTLLLPRTVLPGNQKKVFSFYSEAKPHSIGQGETKNNELI*YYTQPHF SLSGKWLNQYDN*NIYVPLKR*SGSAQKSLWGSESWGPLNQLKGRYVNVFGL*DKDTPQL WWSGRETNTGGVSPAAKPPDKTYGLFVKYKDKLQTIIPPHKMYGGNKKVLTL*EIDFPPR EALGKNKKLYTEYRNKGPLKITGGGNKNTIDLCKRLHPHLAKVGVKKNNKITFDVLFPQ >3_2 MGNNKTKKIILSTTFPLLGRAGTQ*TNTPINSSSDPKAYCMGQNETNVNDLTKYYPQKY* TGSNKTLWQNDNGTIPATL*QGSW*SHIQVYGPESPGNISQGRNKSVDIFGIKDHPTIDC LGLSQKTFTGGVTPAPTSNGKGYKQNVTYNDKAETPTGGCPGYEENKPVFTLKEFPFRIR QGLIKSKKLYNNSYNPGQIRMGGTENNYTIDLSKSPPSTGAGRYEKKPQNAKIEVPLEK* KG >ccc_50006 MKKYIMNKPLLSTAGLLLKTTST*LPKTPLSFSSGAKANNISEYETNIPQLIKYGTQPNF SLS*KWLWPQPNGSGHATKQTWVWYSHIPLFGSEGWGKNNQLRYKYVDPLGTKDGDTVKG YWTYDETFPRGVTPGATSNDKPY*LFLKPRDKQQGIIGKHEFY*GNKPPLTLKEGDFRNR QTLLKNKKPHNGEFGKGQNKITAYGNNYPLDLRKGLKLNDTNRYVKNPPHAQMEGILEKS N* >3_3 LTNLRGGSFLTILDFSLQEAQSLLTGAEDLKSAKYIFTETPTLKNGDIALLIEKDSLRTP RAFEVGAHDQGTNVTYLGPTRSQMGGEETTKNTARVFGGTHAGIEGGGFSQRTVETLAET PAVPVGDGLTDKDHPTLVLAHSLTAGEVLKKNYADIFFTSLADGRGDVANAIMQGAFIMA LTFHLGGPKELNPTDDLLNPRTNIAGENGGNILITDFIDPRAKGSGVIYTDIWVSIFEPA QAWKEGVELLKTYQVNLEMTHTTGNGDVIFENCLPSFHNAHTKIGGEIFEKNGIRDLEVT HAVFEGEASVVIQEADFRMPPTKAVGVATLGKF* >ccc_50008 MLAKMGVALGGNALGISPQPQLELVGNTAKSLVGLISKGPELVIRGGNGPQVGSIILGLP YPAEQGQGPALPFAEFCAMPQPYIGGQLQERLQNEFYSIPMHKQVGTLVTQVEVDVYDPP FHNPSGPIGLLYNKEVSEQPQQEKGGIFVEEAGRGF*RVPPPPQPGSIIELESIKIFIKP DPLVMGAGGGGIPVII*QHPGLKGMGAVIDKDKTSVLLGPNLQCEGLIILTAIDYVYINP NPENQGPLKTTNVDEF*RYPDQNQLGKGSMLPKIEVSISPIQNNPGGSVLITSLNVLDAP LQGKVGTVIKK* >ccc_51705 VENTINVCEKPKRFKLGMPGALMILFILTVPALIATGVIPAGAYSKLSYEPSPQELGIVN PQNQVKIFPGPQQELEGMGVKIKIEQF*SGPIHKPVGIPNT*ERLKLYPAPPQQITGSMV EGTIEAVYIMPFLLVLGGLIGVVQASVSFEPGLLALGKKTKGHEFMLFVFPSLLMMGGGT L*GIEEVSVAPYPILVGIFIALGYDSIFSVPALFLAGSVGSTFSTIISFSPVLASKGAGT TLTDGLFWRIPARIVGGIFVIRYLYWFCKKPKHDPKGSYSYEDKDAF*QQPSLLKEGDSA HLTLRKILILPLLVLPGPIMV*GVMTLCWWPPLMASGFLIFTIIIMFFAGPGQSGLGEKG TVDAFVICASPLLGVSGIIGLARGINFLLNPGLISEGILHFSSSLVLYMSPPLFIMGLLF ILFCLGFFVPPSPGLAGLSMPIFAPLVYTVPIPRFVGVTTYQFGQYVLLFPAPTGLGMAT LQMLNMLYSHPFRFVWGVVAFVLIFGV*VLPTQVLMGS* >ccc_50010 ITHLTIFLDPLPGIWGVLLFRKYFVVYANPVLDWKGRWYLLENIPLLPIPLLILMGIFGV PSEMIIYRQPKHNGVG >ccc_50011 MRRQGAPQITSGLVLGLFPLGNRLGDL*ITLNAVCGIFPFLIWMGLL*TMIKYFNNVNPQ LNSPGVS*MFTTFFMSGFPGTTCLGTF*SNITFINSLIPPIWSLGLVEIMTHIIIFSIPY LKGLGLEKIYPSCTVLFIPIAIGGGTAQISGCFFIGQFPVIYGLGAT*IVLPIVFKRFPA FPWQGSIKTNTSTICAPFPLVAGAGVIEIPKANAFIVIPFLI*AGIF*IYIIIQLPKFPK EPCSGVF*TFTFPLVISAPALKSRGPVQMFPDIWKGLFPIEV*LGTVKILRVFIGYLHPF LKREGQDKILRNASQ* >ccc_50012 MRNQNQKLLFSDFPSLHIWGQTGVQQSTIFRMSPNERSWGNMSLKNAELFYKFPNSIFRG EN* >ccc_50014 MEGLFFAITHTVTAGVNNDGTKLGTFIVTLAENGGGLLGKIFGFY >ccc_50015 MFGLAPAIANRGQAAQQHDSVFLGTPIVDIGGNGVG*LGKLFGFY >3_5 LGGKNILKDFDDFIVDPYDAEGGAFHYKANVFFHKAPNDDFWGFKKINHQHWFAFHPNKL TRGEVLSERFVNFFKHPHMEVGGHRADELFRNFLADPNVKYWGQTLEKIVELFKRHPFYI VRGGVTEKQKRRFNQTPFHKYRGKIFIYEETGFQKPPPEFFRGVFNDNGEDEFQHSPIVG DWGTSDIQGGINFGIAPCWFNWGGFDHNPGIIFDYDPNSWKRGNDIVH* Roary-3.8.0/t/data/mafft_input.fa000066400000000000000000000065101304207556500166270ustar00rootroot00000000000000>1234_8#75_04759 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGCGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA >1111#5_04506 ATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCGGCTATCATG GATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCTATTGATAAT AAAGTTCAACCGCTTATCAGGCGTTGA >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_DT104_v1_02853 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTTTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_SL1344_v2_02736 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTGTGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_D23580_v1_02783 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_DT2_v1_02741 ATGAGCGAGCAGTTAACGGACGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA Roary-3.8.0/t/data/mcl_file000066400000000000000000000002511304207556500154740ustar00rootroot000000000000006259_8#9_01142 6631_2#11_00851 6631_4#5_01901 6664_1#21_00211 6259_8#13_01077 6630_4#9_00008 6259_5#1_00688 6259_5#8_00815 6259_7#7_02078 6631_5#24_01032 6593_5#13_00457Roary-3.8.0/t/data/mdoH.fa.aln000066400000000000000000000121321304207556500157500ustar00rootroot00000000000000>11111_1#11_04119 ATGAATAAAACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCA TTGCCGAAAACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTAC TCGCGAGAAGACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCG GATTCATTGGCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCT ATGCCAAAAGCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGC CGTTTCTGGGATCGCCTGCGTGGGCGGGATGTAACGCCGCGCTATGTTTCTCGTCTGACA AAAGAAGAGCAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATT TTGTTAATTTTGACTCTGGCGCAAACCGTCGTCGCGACCTGGTATATGAAGACCATTCTG CCCTATCAGGGATGGGCGCTCATCAATCCTATGGATATGGTGGGGCAGGATATTTGGGTC TCCTTTATGCAGCTCCTGCCCTACATGCTGCAAACCGGTATCCTGATTTTGTTTGCCGTG CTGTTCTGCTGGGTGTCTGCCGGATTCTGGACGGCGCTGATGGGCTTCCTGCAACTGCTT ATCGGGCGCGATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCG GAACACCAGACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCC GGTCTGCGCGCGACCTGGGAGTCCGTTAAAGCCACAGGCAACGCCGCGCATTTTGACGTC TATATCCTTAGCGATAGTTATAACCCGGATATCTGCGTGGCGGAGCAAAAGGCGTGGATG GAGCTCATCGCGGAAGTGCAGGGCGAAGGCCAAATTTTTTACCGTCGCCGCCGCCGCCGT ATGAAACGCAAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGC TATATGGTGGTGCTGGACGCGGACTCAGTGATGAGCGGCGAGTGTCTGAGCGGGCTGGTG CGCCTGATGGAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGG ATGGATACTCTGTATGCCCGCTGCCAACAGTTCGCGACCCGTGTTTATGGACCGCTGTTT ACCGCCGGGCTGCACTTCTGGCAGTTGGGGGAGTCGCACTACTGGGGGCACAATGCCATT ATCCGCGTGAAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCG TTCGCCGGATCGATTCTTTCCCACGACTTTGTGGAGGCGGCGCTAATGCGTCGGGCAGGG TGGGGCGTCTGGATTGCCTACGATCTCCCCGGCTCCTATGAAGAGCTGCCGCCAAACCTG CTGGATGAGCTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTG TTCCTGGTGAAAGGAATGCACCCGGTGCATCGCGCCGTGTTCCTGACCGGGGTAATGTCA TACCTGTCCGCGCCGTTATGGTTTATGTTCCTCGCGCTTTCTACCGCGCTGCAGGTCGTT CATGCGTTAACAGAGCCGCAATATTTCCTTCAGCCGCGCCAGCTTTTTCCGGTCTGGCCG CAGTGGCGTCCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTG CCGAAGCTGCTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTC TGGCGCGTTACGCTGTCGCTATTGCTGGAAGTGCTGTTCTCCGTGTTGCTGGCGCCGGTG CGTATGCTGTTTCATACCGTGTTTGTGGTCAGCGCGTTCCTCGGCTGGGAAGTGGTCTGG AACTCACCGCAACGCGACGATGATTCTACGCCGTGGGGAGAAGCCTTTATGCGTCACGGC TCTCAACTGCTGCTGGGGCTGGTCTGGGCGGTGGGTATGGCGTGGCTGGATTTACGCTTT CTGTTCTGGCTGGCGCCGATTGTCTTTTCGCTGATTCTGTCGCCATTTGTTTCGGTGATC TCCAGTCGTTCAACGGTAGGATTACGCACCAAACGCTGGAAGCTGTTCCTGATCCCGGAA GAGTATTCGCCGCCTCAGGTGTTGGTCGATACCGATAAATATCTGGAGATGAATCGCCGC CGTATTCTGGACGATGGCTTTATGCATGCGGTATTTAACCCGTCGCTTAATGCGCTGGCG ACCGCGATGGCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGT CATGTGGAGCAGGCGCTAAACGAAACGCCGGAGAAACTGAACCGCGATCGGCGTCTGGTT TTGCTCAGCGATCCGGTGACGATGGCGCGTTTACACTATCGGGTCTGGAATGCGCCAGAG AGATACTCTTCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAG GGACGAACATCGTCAGCGGGATAA >22222_2#22_04119 ATGAATAAAACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCA TTGCCGAAAACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTAC TCGCGAGAAGACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCG GATTCATTGGCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCT ATGCCAAAAGCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGC CGTTTCTGGGATCGCCTGCGTGGGCGGGATGTTACGCCGCGCTATGTTTCTCGTCTGACA AAAGAAGAGCAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATT TTGTTAATTTTGACTCTGGCGCAAACCGTCGTTGCGACCTGGTATATGAAGACCATTCTG CCCTATCAGGGATGGGCGCTCATCAATCCTATTGATATGGTGGGGCAGGATATTTGGGTC TCCTTTATGCAGCTCCTGCCCTACATGCTGCATACCGGTATCCTGATTTTGTTTGCCGTG CTGTTCTGCTGGGTGTCTGCCGGATTCTGGACTGCGCTGATGGGCTTCCTGCAACTGCTT ATCGGGCGCGATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCG GAACACCAGACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCC GGTCTGCGCGCGACCTGGGAGTCCGTTAAAGCTACAGGCAACGCCGCGCATTTTGACGTC TATATCCTTAGCGATAGTTATAACCCGGATATTTGCGTGGCGGAGCAAAAGGCGTGGATG GAGCTCATCGCGGAAGTGCAGGGCGAAGGCCATATTTTTTACCGTCGCCGCCGCCGCCGT ATGAAACGCAAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGC TATATGGTGGTGCTGGACGCGGACTCAGTGATTAGCGGCGAGTGTCTGAGCGGGCTGGTG CGCCTGATGGAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGG ATGGATACTCTGTATGCCCGCTGCCAACAGTTTGCGACCCGTGTTTATGGACCGCTGTTT ACCGCCGGGCTGCACTTCTGGCAGTTGGGGGATTCGCACTACTGGGGGCACAATGCCATT ATCCGCGTGAAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCG TTCGCCGGATCGATTCTTTCCCACGACTTTGTTGAGGCGGCGCTAATGCGTCGGGCAGGG TGGGGCGTCTGGATTGCCTACGATCTCCCCGGTTCCTATGAAGAGCTGCCGCCAAACCTG CTGGATGAGCTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTG TTCCTGGTGAAAGGAATGCACCCGGTGCATCGTGCCGTGTTCCTGACCGGGGTAATGTCA TACCTGTCCGCGCCGTTATGGTTTATGTTCCTTGCGCTTTCTACCGCGCTGCAGGTCGTT CATGCGTTAACAGAGCCGCAATATTTCCTTCATCCGCGCCAGCTTTTTCCGGTCTGGCCG CAGTGGCGTCCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTG CCGAAGCTGCTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTC TGGCGCGTTACGCTGTCGCTATTGCTGGAAGTTCTGTTCTCCGTGTTGCTGGCGCCGGTG CGTATGCTGTTTCATACCGTGTTTGTGGTCAGTGCGTTCCTCGGCTGGGAAGTGGTCTGG AACTCACCGCAACGCGACGATGATTCTACGCCTTGGGGAGAAGCCTTTATGCGTCACGGC TCTCAACTGCTGCTGGGGCTGGTCTGGGCGGTTGGTATGGCGTGGCTGGATTTACGCTTT CTGTTCTGGCTGGCGCCGATTGTCTTTTCGCTTATTCTGTCGCCATTTGTTTCGGTGATC TCCAGTCGTTCAACGGTAGGATTACGCACCAATCGCTGGAAGCTGTTCCTGATCCCGGAA GAGTATTCGCCGCCTCAGGTGTTGGTCGATACTGATAAATATCTGGAGATGAATCGCCGC CGTATTCTGGACGATGGCTTTATGCATGCGGTTTTTAACCCGTCGCTTAATGCGCTGGCG ACCGCGATGGCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGT CATGTGGAGCAGGCGCTAAACGAAACGCCGGATAAACTGAACCGCGATCGGCGTCTGGTT TTGCTCAGCGATCCGGTGACGATGGCGCGTTTTCACTATCGGGTCTGGAATGCGCCAGAG AGATACTCTTCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAG GGACGAACATCGTCAGCGGGATAA Roary-3.8.0/t/data/mdoH_mafft.fa.aln000066400000000000000000000121321304207556500171250ustar00rootroot00000000000000>11111_1#11_04119 ATGAATAAAACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCA TTGCCGAAAACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTAC TCGCGAGAAGACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCG GATTCATTGGCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCT ATGCCAAAAGCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGC CGTTTCTGGGATCGCCTGCGTGGGCGGGATGTAACGCCGCGCTATGTTTCTCGTCTGACA AAAGAAGAGCAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATT TTGTTAATTTTGACTCTGGCGCAAACCGTCGTCGCGACCTGGTATATGAAGACCATTCTG CCCTATCAGGGATGGGCGCTCATCAATCCTATGGATATGGTGGGGCAGGATATTTGGGTC TCCTTTATGCAGCTCCTGCCCTACATGCTGCAAACCGGTATCCTGATTTTGTTTGCCGTG CTGTTCTGCTGGGTGTCTGCCGGATTCTGGACGGCGCTGATGGGCTTCCTGCAACTGCTT ATCGGGCGCGATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCG GAACACCAGACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCC GGTCTGCGCGCGACCTGGGAGTCCGTTAAAGCCACAGGCAACGCCGCGCATTTTGACGTC TATATCCTTAGCGATAGTTATAACCCGGATATCTGCGTGGCGGAGCAAAAGGCGTGGATG GAGCTCATCGCGGAAGTGCAGGGCGAAGGCCAAATTTTTTACCGTCGCCGCCGCCGCCGT ATGAAACGCAAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGC TATATGGTGGTGCTGGACGCGGACTCAGTGATGAGCGGCGAGTGTCTGAGCGGGCTGGTG CGCCTGATGGAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGG ATGGATACTCTGTATGCCCGCTGCCAACAGTTCGCGACCCGTGTTTATGGACCGCTGTTT ACCGCCGGGCTGCACTTCTGGCAGTTGGGGGAGTCGCACTACTGGGGGCACAATGCCATT ATCCGCGTGAAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCG TTCGCCGGATCGATTCTTTCCCACGACTTTGTGGAGGCGGCGCTAATGCGTCGGGCAGGG TGGGGCGTCTGGATTGCCTACGATCTCCCCGGCTCCTATGAAGAGCTGCCGCCAAACCTG CTGGATGAGCTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTG TTCCTGGTGAAAGGAATGCACCCGGTGCATCGCGCCGTGTTCCTGACCGGGGTAATGTCA TACCTGTCCGCGCCGTTATGGTTTATGTTCCTCGCGCTTTCTACCGCGCTGCAGGTCGTT CATGCGTTAACAGAGCCGCAATATTTCCTTCAGCCGCGCCAGCTTTTTCCGGTCTGGCCG CAGTGGCGTCCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTG CCGAAGCTGCTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTC TGGCGCGTTACGCTGTCGCTATTGCTGGAAGTGCTGTTCTCCGTGTTGCTGGCGCCGGTG CGTATGCTGTTTCATACCGTGTTTGTGGTCAGCGCGTTCCTCGGCTGGGAAGTGGTCTGG AACTCACCGCAACGCGACGATGATTCTACGCCGTGGGGAGAAGCCTTTATGCGTCACGGC TCTCAACTGCTGCTGGGGCTGGTCTGGGCGGTGGGTATGGCGTGGCTGGATTTACGCTTT CTGTTCTGGCTGGCGCCGATTGTCTTTTCGCTGATTCTGTCGCCATTTGTTTCGGTGATC TCCAGTCGTTCAACGGTAGGATTACGCACCAAACGCTGGAAGCTGTTCCTGATCCCGGAA GAGTATTCGCCGCCTCAGGTGTTGGTCGATACCGATAAATATCTGGAGATGAATCGCCGC CGTATTCTGGACGATGGCTTTATGCATGCGGTATTTAACCCGTCGCTTAATGCGCTGGCG ACCGCGATGGCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGT CATGTGGAGCAGGCGCTAAACGAAACGCCGGAGAAACTGAACCGCGATCGGCGTCTGGTT TTGCTCAGCGATCCGGTGACGATGGCGCGTTTACACTATCGGGTCTGGAATGCGCCAGAG AGATACTCTTCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAG GGACGAACATCGTCAGCGGGATAA >22222_2#22_04119 ATGAATAAAACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCA TTGCCGAAAACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTAC TCGCGAGAAGACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCG GATTCATTGGCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCT ATGCCAAAAGCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGC CGTTTCTGGGATCGCCTGCGTGGGCGGGATGTTACGCCGCGCTATGTTTCTCGTCTGACA AAAGAAGAGCAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATT TTGTTAATTTTGACTCTGGCGCAAACCGTCGTTGCGACCTGGTATATGAAGACCATTCTG CCCTATCAGGGATGGGCGCTCATCAATCCTATTGATATGGTGGGGCAGGATATTTGGGTC TCCTTTATGCAGCTCCTGCCCTACATGCTGCATACCGGTATCCTGATTTTGTTTGCCGTG CTGTTCTGCTGGGTGTCTGCCGGATTCTGGACTGCGCTGATGGGCTTCCTGCAACTGCTT ATCGGGCGCGATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCG GAACACCAGACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCC GGTCTGCGCGCGACCTGGGAGTCCGTTAAAGCTACAGGCAACGCCGCGCATTTTGACGTC TATATCCTTAGCGATAGTTATAACCCGGATATTTGCGTGGCGGAGCAAAAGGCGTGGATG GAGCTCATCGCGGAAGTGCAGGGCGAAGGCCATATTTTTTACCGTCGCCGCCGCCGCCGT ATGAAACGCAAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGC TATATGGTGGTGCTGGACGCGGACTCAGTGATTAGCGGCGAGTGTCTGAGCGGGCTGGTG CGCCTGATGGAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGG ATGGATACTCTGTATGCCCGCTGCCAACAGTTTGCGACCCGTGTTTATGGACCGCTGTTT ACCGCCGGGCTGCACTTCTGGCAGTTGGGGGATTCGCACTACTGGGGGCACAATGCCATT ATCCGCGTGAAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCG TTCGCCGGATCGATTCTTTCCCACGACTTTGTTGAGGCGGCGCTAATGCGTCGGGCAGGG TGGGGCGTCTGGATTGCCTACGATCTCCCCGGTTCCTATGAAGAGCTGCCGCCAAACCTG CTGGATGAGCTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTG TTCCTGGTGAAAGGAATGCACCCGGTGCATCGTGCCGTGTTCCTGACCGGGGTAATGTCA TACCTGTCCGCGCCGTTATGGTTTATGTTCCTTGCGCTTTCTACCGCGCTGCAGGTCGTT CATGCGTTAACAGAGCCGCAATATTTCCTTCATCCGCGCCAGCTTTTTCCGGTCTGGCCG CAGTGGCGTCCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTG CCGAAGCTGCTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTC TGGCGCGTTACGCTGTCGCTATTGCTGGAAGTTCTGTTCTCCGTGTTGCTGGCGCCGGTG CGTATGCTGTTTCATACCGTGTTTGTGGTCAGTGCGTTCCTCGGCTGGGAAGTGGTCTGG AACTCACCGCAACGCGACGATGATTCTACGCCTTGGGGAGAAGCCTTTATGCGTCACGGC TCTCAACTGCTGCTGGGGCTGGTCTGGGCGGTTGGTATGGCGTGGCTGGATTTACGCTTT CTGTTCTGGCTGGCGCCGATTGTCTTTTCGCTTATTCTGTCGCCATTTGTTTCGGTGATC TCCAGTCGTTCAACGGTAGGATTACGCACCAATCGCTGGAAGCTGTTCCTGATCCCGGAA GAGTATTCGCCGCCTCAGGTGTTGGTCGATACTGATAAATATCTGGAGATGAATCGCCGC CGTATTCTGGACGATGGCTTTATGCATGCGGTTTTTAACCCGTCGCTTAATGCGCTGGCG ACCGCGATGGCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGT CATGTGGAGCAGGCGCTAAACGAAACGCCGGATAAACTGAACCGCGATCGGCGTCTGGTT TTGCTCAGCGATCCGGTGACGATGGCGCGTTTTCACTATCGGGTCTGGAATGCGCCAGAG AGATACTCTTCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAG GGACGAACATCGTCAGCGGGATAA Roary-3.8.0/t/data/multfasta1.aln000066400000000000000000000001341304207556500165540ustar00rootroot00000000000000>1111_1#1_00123 AAAAA- >2222_2#2_00456 CCCCC- >3333_3#3_00789 TTTTT- >4444_4#4_00123 GGGGG- Roary-3.8.0/t/data/multfasta2.aln000066400000000000000000000001441304207556500165560ustar00rootroot00000000000000>1111_1#1_01123 CCCC---- >2222_2#2_01456 AAAA---- >3333_3#3_01789 GGGG---- >4444_4#4_01123 TTTT---- Roary-3.8.0/t/data/multfasta3.aln000066400000000000000000000002001304207556500165500ustar00rootroot00000000000000>1111_1#1_02123 TTTTTTTTTTTTTTT >2222_2#2_02456 AAAAAAAAAAAAAAA >3333_3#3_02789 CCCCCCCCCCCCCCC >4444_4#4_02123 GGGGGGGGGGGGGGG Roary-3.8.0/t/data/multfasta4.aln000066400000000000000000000001031304207556500165530ustar00rootroot00000000000000>1111_1#1_0001 -AAAA- >2222_2#2_0001 -TTTT- >4444_4#4_0001 -CCCC- Roary-3.8.0/t/data/multfasta5.aln000066400000000000000000000001031304207556500165540ustar00rootroot00000000000000>1111_1#1_0004 -AAAA- >2222_2#2_0004 -TTTT- >4444_4#4_0004 -CCCC- Roary-3.8.0/t/data/multifasta_files/000077500000000000000000000000001304207556500173345ustar00rootroot00000000000000Roary-3.8.0/t/data/multifasta_files/expected_output.embl000066400000000000000000000010411304207556500234120ustar00rootroot00000000000000ID Genome standard; DNA; PRO; 1234 BP. XX FH Key Location/Qualifiers FH FT feature 1..1 FT /label=1 FT /locus_tag=1 FT feature 2..11 FT /label=outof_order FT /locus_tag=outof_order FT feature 12..111 FT /label=2 FT /locus_tag=2 FT feature 112..1111 FT /label=3 FT /locus_tag=3 XX SQ Sequence 1234 BP; 789 A; 1717 C; 1693 G; 691 T; 0 other; // Roary-3.8.0/t/data/nnn_at_end.fa000066400000000000000000000000711304207556500164120ustar00rootroot00000000000000>1 AAANNN >2 AAACCCnNn >3 AAACCCGGGnnn >4 AAACCCGGGTTTNNNRoary-3.8.0/t/data/nnn_at_end.fa.sorted.fa000066400000000000000000000000561304207556500203010ustar00rootroot00000000000000>1 AAA >2 AAACCC >3 AAACCCGGG >4 AAACCCGGGTTT Roary-3.8.0/t/data/nuc_multifasta.fa000066400000000000000000000143311304207556500173310ustar00rootroot00000000000000>AAAA#74_01075 TGTCAGTACCACTTATTCTGACCTTACTGGCGGGCGCTGCCACCTTTATTGGCGCGTTTC TTGGCGTTCTTGGCCAAAAACCGTCTAACCGCGTGCTGGCTTTTTCGCTGGGCTTCGCCG CAGGGATCATGCTGCTCATCTCGCTGATGGAGATGCTGCCCGCCGCGTTAGATACCGAGG GGATGTCGCCTGTACTGGGCTACGGGATGTTTATTATCGGCCTGTTGGGCTACTTCGGGC TGGATCGTCTGCTTCCTCACGCTCATCCGCAGGATCTGGTGCAAAAAAGGCAGCAGCCGC TTCCCGGCTCGATAAAACGCACTGCGATTTTATTGACGCTCGGCATTAGCCTGCACAACT TTCCGGAAGGAATCGCCACCTTTGTCACTGCCAGCAGCAATCTTGAACTGGGTTTCGGCA TCGCACTGGCGGTGGCGTTGCACAATATTCCTGAAGGGCTGGCGGTTGCCGGCCCGGTTT ATGCCGCGACGGGCTCAAAACGTACCGCGATTTTTTGGGCCGGTATCTCCGGCATGGCGG AAATTCTTGGCGGCGTGCTGGCGTGGCTGATTTTGGGCAGCCTGGTTTCACCGATCGTTA TGGCGGCTATCATGGCAGCAGTCGCCGGCATTATGGTGGCGCTCTCCGTCGATGAACTGA TGCCGTTGGCAAAAGAGATCGATCCTAACAATAACCCCAGCTATGGTGTGCTTTGCGGTA TGTCCATCATGGGGCTCAGTCTCGTCATTTTGCAGACGATAGGTATCGGTTAA >BBBB#75_01314 ATGTCAGTACCACTTATTCTGACCTTACTGGCGGGCGCTGCCACCTTTATTGGCGCGTTT CTTGGCGTTCTTGGCCAAAAACCGTCTAACCGCGTGCTGGCTTTTTCGCTGGGCTTCGCC GCAGGGATCATGCTGCTCATCTCGCTGATGGATGCTGCCCGCCGCGTTAGATACCGAGGG GATGTCGCCTGTACTGGGCTACGGGATGTTTATTATCGGCCTGTTGGGCTACTTCGGGCT GGATCGTCTGCTTCCTCACGCTCATCCGCAGGATCTGGTGCAAAAAAGGCAGCAGCCGCT TCCCGGCTCGATAAAACGCACTGCGATTTTATTGACGCTCGGCATTAGCCTGCACAACTT TCCGGAAGGAATCGCCACCTTTGTCACTGCCAGCAGCAATCTTGAACTGGGTTTCGGCAT CGCACTGGCGGTGGCGTTGCACAATATTCCTGAAGGGCTGGCGGTTGCCGGCCCGGTTTA TGCCGCGACGGGCTCAAAACGTACCGCGATTTTTTGGGCCGGTATCTCCGGCATGGCGGA AATTCTTGGCGGCGTGCTGGCGTGGCTGATTTTGGGCAGCCTGGTTTCACCGATCGTTAT GGCGGCTATCATGGCAGCAGTCGCCGGCATTATGGTGGCGCTCTCCGTCGATGAACTGAT GCCGTTGGCAAAAGAGATCGATCCTAACAATAACCCCAGCTATGGTGTGCTTTGCGGTAT GTCCATCATGGGGCTCAGTCTCGTCATTTTGCAGACGATAGGTATCGGTTAA >CCCC#76_00877 ATGTCAGTACCACTTATTCTGACCTTACTGGCGGGCGCTGCCACCTTTATTGGCGCGTTT CTTGGCGTTCTTGGCCAAAAACCGTCTAACCGCGTGCTGGCTTTTTCGCTGGGCTTCGCC GCAGGGATCATGCTGCTCATCTCGCTGATGGAGATGCTGCCCGCCGCGTTAGATACCGAG GGGATGTCGCCTGTACTGGGCTACGGGAGTTTATTATCGGCCTGTTGGGCTACTTCGGGC TGGATCGTCTGCTTCCTCACGCTCATCCGCAGGATCTGGTGCAAAAAAGGCAGCAGCCGC TTCCCGGCTCGATAAAACGCACTGCGATTTTATTGACGCTCGGCATTAGCCTGCACAACT TTCCGGAAGGAATCACCTTTGTCACTGCCAGCAGCAATCTTGAACTGGGTTTCGGCATCG CACTGGCGGTGGCGTTGCACAATATTCCTGAAGGGCTGGCGGTTGCCGGCCCGGTTTATG CCGCGACGGGCTCAAAACGTACCGCGATTTTTTGGGCCGGTATCTCCGGCATGGCGGAAA TTCTTGGCGGCGTGCTGGCGTGGCTGATTTTGGGCAGCCTGGTTTCACCGATCGTTATGG CGGCTATCATGGCAGCAGTCGCCGGCATTATGGTGGCGCTCTCCGTCGATGAACTGATGC CGTTGGCAAAAGAGATCGATCCTAACAATAACCCCAGCTATGGTGTGCTTTGCGGTATGT CCATCATGGGGCTCAGTCTCGTCATTTTGCAGACGATAGGTATCGGTTAA >DDDD#77_01105 ATGTCAGTACCACTTATTCTGACCTTACTGGCGGGCGCTGCCACCTTTATTGGCGCGTTT CTTGGCGTTCTTGGCCAAAAACCGTCTAACCGCGTGCTGGCTTTTTCGCTGGGCTTCGCC GCAGGGATCATGCTGCTCATCTCGCTGATGGAGATGCTGCCCGCCGCGTTAGATACCGAG GGGATGTCGCCTGTACTGGGCTACGGGATGTTTATTATCGGCCTGTTGGGCTACTTCGGG CTGGATCGTCTGCTTCCTCACGCTCATCCGCAGGATCTGGTGCAAAAAAGGCAGCAGCCG CTTCCCGGCTCGATAAAACGCACTGCGATTTTATTGACGCTCGGCATTAGCCTGCACAAC TTTCCGGAAGGAATCGCCACCTTTGTCACTGCCAGCAGCAATCTTGAACTGGGTTTCGGC ATCGCACTGGCGGTGGCGTTGCACAATATTCCTGAAGGGCTGGCGGTTGCCGGCCCGGTT TATGCCGCGACGGGCTCAAAACGTACCGCGATTTTTTGGGCCGGTATCTCCGGCATGGCG GAAATTCTTGGCGGCGTGCTGGCGTGGCTGATTTTGGGCAGCCTGGTTTCACCGATCGTT ATGGCGGCTATCATGGCAGCAGTCGCCGGCATTATGGTGGCGCTCTCCGTCGATGAACTG ATGCCGTTGGCAAAAGAGATCGATCCTAACAATAACCCCAGCTATGGTGTGCTTTGCGGT ATGTCCATCATGGGGCTCAGTCTCGTCATTTTGCAGACGATAGGTATCGGTTAA >EEEE ATGTCAGTACCACTTATTCTGACCTTACTGGCGGGCGCTGCCACCTTTATTGGCGCGTTT CTTGGCGTTCTTGGCCAAAAACCGTCTAACCGCGTGCTGGCTTTTTCGCTGGGCTTCGCC GCAGGGATCATGCTGCTCATCTCGCTGATGGAGATGCTGCCCGCCGCGTTAGATACCGAG GGGATGTCGCCTGTACTGGGCTACGGGATGTTTATTATCGGCCTGTTGGGCTACTTCGGG CTGGATCGTCTGCTTCCTCACGCTCATCCGCAGGATCTGGTGCAAAAAAGGCAGCAGCCG CTTCCCGGCTCGATAAAACGCACTGCGATTTTATTGACGCTCGGCATTAGCCTGCACAAC TTTCCGGAAGGAATCGCCACCTTTGTCACTGCCAGCAGCAATCTTGAACTGGGTTTCGGC ATCGCACTGGCGGTGGCGTTGCACAATATTCCTGAAGGGCTGGCGGTTGCCGGCCCGGTT TATGCCGCGACGGGCTCAAAACGTACCGCGATTTTTTGGGCCGGTATCTCCGGCATGGCG GAAATTCTCGGCGTGCTGGCGTGGCTGATTTTGGGCAGCCTGGTTTCACCGATCGTTATG GCGGCTATCATGGCAGCAGTCGCCGGCATTATGGTGGCGCTCTCCGTCGATGAACTGATG CCGTTGGCAAAAGAGATCGATCCTAACAATAACCCCAGCTATGGTGTGCTTTGCGGTATG TCCATCATGGGGCTCAGTCTCGTCATTTTGCAGACGATAGGTATCGGTTAA >FFFF ATGTCAGTACCACTTATTCTGACCTTACTGGCGGGCGCTGCCACCTTTATTGGCGCGTTT CTTGGCGTTCTTGGCCAAAAACCGTCTAACCGCGTGCTGGCTTTTTCGCTGGGCTTCGCC GCAGGGATCATGCTGCTCATCTCGCTGATGGAGATGCTGCCCGCCGCGTTAGATACCGAG GGGATGTCGCCTGTACTGGGCTACGGGATGTTTATTATCGGCCTGTTGGGCTACTTCGGG CTGGATCGTCTGCTTCCTCACGCTCATCCGCAGGATCTGGTGCAAAAAAGGCAGCAGCCG CTTCCCGGCTCGATAAAACGCACTGCGATTTTATTGACGCTCGGCATTAGCCTGCACAAC TTTCCGGAAGGAATCGCCACCTTTGTCACTGCCAGCAGCAATCTTGAACTGGGTTTCGGC ATCGCACTGGCGGTGGCGTTGCACAATATTCCTGAAGGGCTGGCGGTTGCCGGCCCGGTT TATGCCGCGACGGGCTCAAAACGTACCGCGATTTTTTGGGCCGGTATCTCCGGCATGGCG GAAATTCTTGGCGGCGTGCTGGCGTGGCTGATTTTGGGCAGCCTGGCACCGATCGTTATG GCGGCTATCATGGCAGCAGTCGCCGGCATTATGGTGGCGCTCTCCGTCGATGAACTGATG CCGTTGGCAAAAGAGATCGATCCTAACAATAACCCCAGCTATGGTGTGCTTTGCGGTATG TCCATCATGGGGCTCAGTCTCGTCATTTTGCAGACGATAGGTATCGGTTAA >GGGG ATGTCAGTACCACTTATTCTGACCTTACTGGCGGGCGCTGCCACCTTTATTGGCGCGTTT CTTGGCGTTCTTGGCCAAAAACCGTCTAACCGCGTGCTGGCTTTTTCGCTGGGCTTCGCC GCAGGGATCATGCTGCTCATCTCGCTGATGGAGATGCTGCCCGCCGCGTTAGATACCGAG GGGATGTCGCCTGTACTGGGCTACGGGATGTTTATTATCGGCCTGTTGGGCTACTTCGGG CTGGATCGTCTGCTTCCTCACGCTCATCCGCAGGATCTGGTGCAAAAAAGGCAGCAGCCG CTTCCCGGCTCGATAAAACGCACTGCGATTTTATTGACGCTCGGCATTAGCCTGCACAAC TTTCCGGAAGGAATCGCCACCTTTGTCACTGCCAGCAGCAATCTTGAACTGGGTTTCGGC ATCGCACTGGGGTGGCGTTGCACAATATTCCTGAAGGGCTGGCGGTTGCCGGCCCGGTTT ATGCCGCGACGGGCTCAAAACGTACCGCGATTTTTTGGGCCGGTATCTCCGGCATGGCGG AAATTCTTGGCGGCGTGCTGGCGTGGCTGATTTTGGGCAGCCTGGTTTCACCGATCGTTA TGGCGGCTATCATGGCAGCAGTCGCCGGCATTATGGTGGCGCTCTCCGATGAACTGATGC CGTTGGCAAAAGAGATCGATCCTAACAATAACCCCAGCTATGGTGTGCTTTGCGGTATGT CCATCATGGGGCTCAGTCTCGTCATTTTGCAGACGATAGGTATCGGTTAA >HHHH ATGTCAGTACCACTTATTCTGACCTTACTGGCGGGCGCTGCCACCTTTATTGGCGCGTTT CTTGGCGTTCTTGGCCAAAAACCGTCTAACCGCGTGCTGGCTTTTTCGCTGGGCTTCGCC GCAGGGATCATGCTGCTCATCTCGCTGATGGAGATGCTGCCCGCCGCGTTAGATACCGAG GGGATGTCGCCTGTACTGGGCTACGGGATGTTTATTATCGGCCTGTTGGGCTACTTCGGG CTGGATCGTCTGCTTCCTCACGCTTCCGCAGGATCTGGTGCAAAAAAGGCAGCAGCCGCT TCCCGGCTCGATAAAACGCACTGCGATTTTATTGACGCTCGGCATTAGCCTGCACAACTT TCCGGAAGGAATCGCCACCTTTGTCACTGCCAGCAGCAATCTTGAACTGGGTTTCGGCAT CGCACTGGCGGTGGCGTTGCACAATATTCCTGAAGGGCTGGCGGTTGCCGGCCCGGTTTA TGCCGCGACGGGCTCAAAACGTACCGCGATTTTTTGGGCCGGTATCTCCGGCATGGCGGA AATTCTTGGCGGCGTGCTGGCGTGGCTGATTTTGGGCAGCCTGGTTTCACCGATCGTTAT GGCGGCTATCATGGCAGCAGTCGCCGGCATTATGGTGGCGCTCTCCGTCGATGAACTGAT GCCGTTGGCAAAAGAGATCGATCCTAACAATAACCCCAGCTATGGTGTGCTTTGCGGTAT GTCCATCATGGGGCTCAGTCTCGTCATTTTGCAGACGATAGGTATCGGTTAA Roary-3.8.0/t/data/nuc_to_be_aligned.fa000066400000000000000000000120221304207556500177260ustar00rootroot00000000000000>1 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTGCATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGAAAATATTTGGCGTCAGTAAAATATTTCTTCATTAATCACA TCT >2 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGGTGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACA TCT >3 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAGGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACA TCTRoary-3.8.0/t/data/out_of_order_fasta.fa000066400000000000000000000001061304207556500201520ustar00rootroot00000000000000>5555 AAAAAAA >3333 GGGGGGG >4444 CCCCCCC >2222 TTTTTTT >1111 AAAAAAA Roary-3.8.0/t/data/out_of_order_fasta.fa.sorted.fa000066400000000000000000000001061304207556500220360ustar00rootroot00000000000000>1111 AAAAAAA >2222 TTTTTTT >3333 GGGGGGG >4444 CCCCCCC >5555 AAAAAAA Roary-3.8.0/t/data/overall_gene_presence_absence.csv000066400000000000000000000052721304207556500225320ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","Min group size nuc","Max group size nuc","Avg group size nuc","query_1","query_2","query_5" "hly","","Alpha-toxin","2","2","1","1","1","1","7","","959","959","959","1_1","2_1___1","" "group_10","","hypothetical protein","2","2","1","1","10","1","6","","227","227","227","abc_00010","abc_00010___10","" "group_11","","C4-dicarboxylate transporter/malic acid transport protein","2","2","1","1","11","1","5","","947","947","947","abc_00011","abc_00011___11","" "group_12","","hypothetical protein","2","2","1","1","12","1","4","","188","188","188","abc_00012","abc_00012___12","" "group_13","","Gonococcal growth inhibitor III","2","2","1","1","13","1","3","","134","134","134","abc_00014","abc_00014___14","" "group_14","","Gonococcal growth inhibitor III","2","2","1","1","14","1","2","","134","134","134","1_6","2_7___15","" "yfnB","","Putative HAD-hydrolase yfnB","2","2","1","1","15","1","1","","686","686","686","abc_00016","abc_00016___16","" "group_2","","hypothetical protein","2","2","1","1","2","1","8","","146","146","146","abc_00002","abc_00002___2","" "group_3","","hypothetical protein","2","2","1","1","3","1","9","","197","197","197","abc_00003","abc_00003___3","" "group_4","","superantigen-like protein","2","2","1","1","4","1","10","","716","716","716","abc_00004","abc_00004___4","" "speH","","hypothetical protein","2","2","1","1","5","1","11","","725","725","725","1_2","2_2___5","" "group_6","","superantigen-like protein","2","2","1","1","6","1","12","","725","725","725","abc_00006","abc_00006___6","" "argF","","Ornithine carbamoyltransferase","2","2","1","1","7","1","13","","1001","1001","1001","1_3","2_3___7","" "arcC1","","Carbamate kinase 1","2","2","1","1","8","1","14","","935","935","935","abc_00008","abc_00008___8","" "group_9","","16S ribosomal RNA","2","2","1","1","9","1","15","","1556","1556","1556","abc_01705","abc_01705___9","" "group_16","","hypothetical protein","1","1","1","2","1","2","6","","146","146","146","","","abc_50002" "group_17","argF","Ornithine carbamoyltransferase","1","1","1","2","6","2","5","","1001","1001","1001","","","3_3" "group_18","","hypothetical protein","1","1","1","2","5","2","4","","227","227","227","","","abc_50010" "group_19","","hypothetical protein","1","1","1","2","4","2","3","","188","188","188","","","abc_50012" "group_20","","Gonococcal growth inhibitor III","1","1","1","2","3","2","2","","134","134","134","","","abc_50014" "group_21","yfnB","Putative HAD-hydrolase yfnB","1","1","1","2","2","2","1","","686","686","686","","","3_5" Roary-3.8.0/t/data/pan_genome_sequences/000077500000000000000000000000001304207556500201645ustar00rootroot00000000000000Roary-3.8.0/t/data/pan_genome_sequences/argF.fa000066400000000000000000000040001304207556500213450ustar00rootroot00000000000000>1_3 ATGAAAAATTTACGAAACAGAAGTTTTTTAACTTTATTAGACTTTTCACGACAAGAGGTA GAATTCTTATTAACACTCTCCGAGGATTTAAAACGTGCTAAATATATTGGCACTGAAAAG CCTATGTTAAAAAATAAAAATATTGCACTGTTATTTGAAAAAGATTCTACAAGAACGCGA TGTGCATTTGAAGTTGCAGCGCATGATCAAGGTGCAAATGTAACTTATTTAGGCCCAACT GGATCACAAATGGGTAAAAAAGAAACAACTAAAGATACTGCACGTGTGCTTGGTGGAATG TATGATGGCATTGAATACCGTGGTTTTTCACAAAGAACAGTAGAAACTTTAGCTGAAAAT TCAGGCGTACCAGTGTGGAATGGTTTAACTGATGAAGATCATCCTACTCAAGTTCTTGCT GATTTCTTAACAGCAAAAGAAGTCTTAAAAAAAGATTATGCAGATATTAACTTTACATAT GTTGGAGATGGTCGTAATAACGTTGCAAATGCATTAATGCAAGGTGCTGCCATTATGGGT ATGAACTTCCATTTAGTTTGTCCAAAAGAATTAAATCCAACAGATGAATTATTAAATCGC TGTAAAAATATTGCCGCTGAAAATGGTGGCAACATATTAATCACAGATGATATTGACCAA GGTGTAAAAGGTTCGGATGTAATTTACACTGATGTTTGGGTATCAATGGGTGAACCTGAT GAAGTATGGAAAGAACGACTTGAATTATTGAAACCATATCAAGTAAATAAAGAAATGATG GATAAAACTGGTAATCCAAATGTTATTTTTGAGCATTGCTTACCATCTTTCCATAATGCT GATACGAAAATTGGTCAACAAATTTTTGAAAAATATGGTATTCGAGAAATGGAAGTTACA GATGAAGTATTCGAAAGTAAAGCTTCAGTTGTATTCCAAGAAGCTGAGAACAGAATGCAT ACAATCAAAGCAGTCATGGTTGCTACATTGGGTGAATTTTAA >3_3 ATGAAAAATTTACGAAACAGAAGTTTTTTAACTTTATTAGACTTTTCACGACAAGAGGTA GAATTCTTATTAACACTCTCCGAGGATTTAAAACGTGCTAAATATATTGGCACTGAAAAG CCTATGTTAAAAAATAAAAATATTGCACTGTTATTTGAAAAAGATTCTACAAGAACGCGA TGTGCATTTGAAGTTGCAGCGCATGATCAAGGTGCAAATGTAACTTATTTAGGCCCAACT GGATCACAAATGGGTAAAAAAGAAACAACTAAAGATACTGCACGTGTGCTTGGTGGAATG TATGATGGCATTGAATACCGTGGTTTTTCACAAAGAACAGTAGAAACTTTAGCTGAAAAT TCAGGCGTACCAGTGTGGAATGGTTTAACTGATGAAGATCATCCTACTCAAGTTCTTGCT GATTTCTTAACAGCAAAAGAAGTCTTAAAAAAAGATTATGCAGATATTAACTTTACATAT GTTGGAGATGGTCGTAATAACGTTGCAAATGCATTAATGCAAGGTGCTGCCATTATGGGT ATGAACTTCCATTTAGTTTGTCCAAAAGAATTAAATCCAACAGATGAATTATTAAATCGC TGTAAAAATATTGCCGCTGAAAATGGTGGCAACATATTAATCACAGATGATATTGACCAA GGTGTAAAAGGTTCGGATGTAATTTACACTGATGTTTGGGTATCAATGGGTGAACCTGAT GAAGTATGGAAAGAACGACTTGAATTATTGAAACCATATCAAGTAAATAAAGAAATGATG GATAAAACTGGTAATCCAAATGTTATTTTTGAGCATTGCTTACCATCTTTCCATAATGCT GATACGAAAATTGGTCAACAAATTTTTGAAAAATATGGTATTCGAGAAATGGAAGTTACA GATGAAGTATTCGAAAGTAAAGCTTCAGTTGTATTCCAAGAAGCTGAGAACAGAATGCAT ACAATCAAAGCAGTCATGGTTGCTACATTGGGTGAATTTTAA Roary-3.8.0/t/data/pan_genome_sequences/hly.fa000066400000000000000000000055771304207556500213060ustar00rootroot00000000000000>1_1 ATGAAAACACGTATAGTCAGCTCAGTAACAACAACACTATTGCTAGGTTCCATATTAATG AATCCTGTCGCTAATGCCGCAGATTCTGATATTAATATTAAAACCGGTACTACAGATATT GGAAGCAATACTACAGTAAAAACAGGTGATTTAGTCACTTATGATAAAGAAAATGGCATG CACAAAAAAGTATTTTATAGTTTTATCGATGATAAAAATCACAATAAAAAACTGCTAGTT ATTAGAACGAAAGGTACCATTGCTGGTCAATATAGAGTTTATAGCGAAGAAGGTGCTAAC AAAAGTGGTTTAGCCTGGCCTTCAGCCTTTAAGGTACAGTTGCAACTACCTGATAATGAA GTAGCTCAAATATCTGATTACTATCCAAGAAATTCGATTGATACAAAAGAGTATATGAGT ACTTTAACTTATGGATTCAACGGTAATGTTACTGGTGATGATACAGGAAAAATTGGCGGC CTTATTGGTGCAAATGTTTCGATTGGTCATACACTGAAATATGTTCAACCTGATTTCAAA ACAATTTTAGAGAGCCCAACTGATAAAAAAGTAGGCTGGAAAGTGATATTTAACAATATG GTGAATCAAAATTGGGGACCATATGATAGAGATTCTTGGAACCCGGTATATGGCAATCAA CTTTTCATGAAAACTAGAAATGGTTCTATGAAAGCAGCAGAGAACTTCCTTGATCCTAAC AAAGCAAGTTCTCTATTATCTTCAGGGTTTTCACCAGACTTCGCTACAGTTATTACTATG GATAGAAAAGCATCCAAACAACAAACAAATATAGATGTAATATACGAACGAGTTCGTGAT GACTACCAATTGCATTGGACTTCAACAAATTGGAAAGGTACCAATACTAAAGATAAATGG ACAGATCGTTCTTCAGAAAGATATAAAATCGATTGGGAAAAAGAAGAAATGACAAATTAA >2_1 ATGAAAACACGTATAGTCAGCTCAGTAACAACAACACTATTGCTAGGTTCCATATTAATG AATCCTGTCGCTAATGCCGCAGATTCTGATATTAATATTAAAACCGGTACTACAGATATT GGAAGCAATACTACAGTAAAAACAGGTGATTTAGTCACTTATGATAAAGAAAATGGCATG CACAAAAAAGTATTTTATAGTTTTATCGATGATAAAAATCACAATAAAAAACTGCTAGTT ATTAGAACGAAAGGTACCATTGCTGGTCAATATAGAGTTTATAGCGAAGAAGGTGCTAAC AAAAGTGGTTTAGCCTGGCCTTCAGCCTTTAAGGTACAGTTGCAACTACCTGATAATGAA GTAGCTCAAATATCTGATTACTATCCAAGAAATTCGATTGATACAAAAGAGTATATGAGT ACTTTAACTTATGGATTCAACGGTAATGTTACTGGTGATGATACAGGAAAAATTGGCGGC CTTATTGGTGCAAATGTTTCGATTGGTCATACACTGAAATATGTTCAACCTGATTTCAAA ACAATTTTAGAGAGCCCAACTGATAAAAAAGTAGGCTGGAAAGTGATATTTAACAATATG GTGAATCAAAATTGGGGACCATATGATAGAGATTCTTGGAACCCGGTATATGGCAATCAA CTTTTCATGAAAACTAGAAATGGTTCTATGAAAGCAGCAGAGAACTTCCTTGATCCTAAC AAAGCAAGTTCTCTATTATCTTCAGGGTTTTCACCAGACTTCGCTACAGTTATTACTATG GATAGAAAAGCATCCAAACAACAAACAAATATAGATGTAATATACGAACGAGTTCGTGAT GACTACCAATTGCATTGGACTTCAACAAATTGGAAAGGTACCAATACTAAAGATAAATGG ACAGATCGTTCTTCAGAAAGATATAAAATCGATTGGGAAAAAGAAGAAATGACAAATTAA >3_1 ATGAAAACACGTATAGTCAGCTCAGTAACAACAACACTATTGCTAGGTTCCATATTAATG AATCCTGTCGCTAATGCCGCAGATTCTGATATTAATATTAAAACCGGTACTACAGATATT GGAAGCAATACTACAGTAAAAACAGGTGATTTAGTCACTTATGATAAAGAAAATGGCATG CACAAAAAAGTATTTTATAGTTTTATCGATGATAAAAATCACAATAAAAAACTGCTAGTT ATTAGAACGAAAGGTACCATTGCTGGTCAATATAGAGTTTATAGCGAAGAAGGTGCTAAC AAAAGTGGTTTAGCCTGGCCTTCAGCCTTTAAGGTACAGTTGCAACTACCTGATAATGAA GTAGCTCAAATATCTGATTACTATCCAAGAAATTCGATTGATACAAAAGAGTATATGAGT ACTTTAACTTATGGATTCAACGGTAATGTTACTGGTGATGATACAGGAAAAATTGGCGGC CTTATTGGTGCAAATGTTTCGATTGGTCATACACTGAAATATGTTCAACCTGATTTCAAA ACAATTTTAGAGAGCCCAACTGATAAAAAAGTAGGCTGGAAAGTGATATTTAACAATATG GTGAATCAAAATTGGGGACCATATGATAGAGATTCTTGGAACCCGGTATATGGCAATCAA CTTTTCATGAAAACTAGAAATGGTTCTATGAAAGCAGCAGAGAACTTCCTTGATCCTAAC AAAGCAAGTTCTCTATTATCTTCAGGGTTTTCACCAGACTTCGCTACAGTTATTACTATG GATAGAAAAGCATCCAAACAACAAACAAATATAGATGTAATATACGAACGAGTTCGTGAT GACTACCAATTGCATTGGACTTCAACAAATTGGAAAGGTACCAATACTAAAGATAAATGG ACAGATCGTTCTTCAGAAAGATATAAAATCGATTGGGAAAAAGAAGAAATGACAAATTAA Roary-3.8.0/t/data/pan_genome_sequences/speH.fa000066400000000000000000000027201304207556500213740ustar00rootroot00000000000000>1_2 ATGAACAATAACATCACGAAAAAAATTATTTTATCAACAACATTGTTACTATTAGGTACA GCATTTACACAATTTCCTAATACACCTATCAATTCTTCATCTGAAGCGAAAGCTTATTAT ATAAATCAAAACGAAACTAACGTTAATGAGTTAACTAAATATTACTCGCAAAAATATTTA ACCTTCTCTAACAGTACGTTATGGCAAAAAGATAACGGTACGATTCATGCAACGTTGTTA CAGTTTTCTTGGTATAGTCATATTCAAGTTTATGGACCTGAAAGTTGGGGCAATATCAAC CAATTAAGAAATAAAAGCGTTGATATTTTTGGCATAAAAGACCAAGAAACCATTGATTCT TTTGCATTATCTCAAGAAACGTTTACTGGTGGTGTTACTCCTGCAGCAACATCTAACGAT AAACACTATAAACTGAATGTAACATATAAAGATAAAGCAGAAACGTTTACTGGCGGATTT CCAGTTTATGAAGGCAATAAGCCTGTTTTAACTTTAAAAGAATTAGATTTTCGTATTCGT CAAACATTAATTAAAAGTAAAAAATTATATAATAATTCTTATAATAAAGGACAAATTAAA ATAACAGGTACAGACAATAACTACACAATAGATTTAAGTAAAAGGTTGCCATCAACTGAT GCAAATAGATATGTTAAAAAACCTCAAAATGCAAAAATTGAAGTTATCCTCGAAAAATCA AACTAA >2_2 ATGAACAATAACATCACGAAAAAAATTATTTTATCAACAACATTGTTACTATTAGGTACA GCATTTACACAATTTCCTAATACACCTATCAATTCTTCATCTGAAGCGAAAGCTTATTAT ATAAATCAAAACGAAACTAACGTTAATGAGTTAACTAAATATTACTCGCAAAAATATTTA ACCTTCTCTAACAGTACGTTATGGCAAAAAGATAACGGTACGATTCATGCAACGTTGTTA CAGTTTTCTTGGTATAGTCATATTCAAGTTTATGGACCTGAAAGTTGGGGCAATATCAAC CAATTAAGAAATAAAAGCGTTGATATTTTTGGCATAAAAGACCAAGAAACCATTGATTCT TTTGCATTATCTCAAGAAACGTTTACTGGTGGTGTTACTCCTGCAGCAACATCTAACGAT AAACACTATAAACTGAATGTAACATATAAAGATAAAGCAGAAACGTTTACTGGCGGATTT CCAGTTTATGAAGGCAATAAGCCTGTTTTAACTTTAAAAGAATTAGATTTTCGTATTCGT CAAACATTAATTAAAAGTAAAAAATTATATAATAATTCTTATAATAAAGGACAAATTAAA ATAACAGGTACAGACAATAACTACACAATAGATTTAAGTAAAAGGTTGCCATCAACTGAT GCAAATAGATATGTTAAAAAACCTCAAAATGCAAAAATTGAAGTTATCCTCGAAAAATCA AACTAA Roary-3.8.0/t/data/post_analysis/000077500000000000000000000000001304207556500166715ustar00rootroot00000000000000Roary-3.8.0/t/data/post_analysis/_clustered.clstr000066400000000000000000000022151304207556500220730ustar00rootroot00000000000000>Cluster 0 0 518aa, >abc_01705... * 1 518aa, >abc_01705... at 100.00% >Cluster 1 0 333aa, >1_3... * 1 333aa, >2_3... at 100.00% >Cluster 2 0 333aa, >3_3... * >Cluster 3 0 319aa, >1_1... * 1 319aa, >2_1... at 100.00% >Cluster 4 0 315aa, >abc_00011... * 1 315aa, >abc_00011... at 100.00% >Cluster 5 0 311aa, >abc_00008... * 1 311aa, >abc_00008... at 100.00% >Cluster 6 0 241aa, >1_2... * 1 241aa, >2_2... at 100.00% >Cluster 7 0 241aa, >abc_00006... * 1 241aa, >abc_00006... at 100.00% >Cluster 8 0 238aa, >abc_00004... * 1 238aa, >abc_00004... at 100.00% >Cluster 9 0 228aa, >abc_00016... * 1 228aa, >abc_00016... at 100.00% >Cluster 10 0 228aa, >3_5... * >Cluster 11 0 75aa, >abc_00010... * 1 75aa, >abc_00010... at 100.00% >Cluster 12 0 65aa, >abc_00003... * 1 65aa, >abc_00003... at 100.00% >Cluster 13 0 62aa, >abc_00012... * 1 62aa, >abc_00012... at 100.00% >Cluster 14 0 62aa, >abc_00012... * >Cluster 15 0 49aa, >abc_00002... * >Cluster 16 0 48aa, >abc_00002... * 1 48aa, >abc_00002... at 100.00% >Cluster 17 0 45aa, >abc_00014... * >Cluster 18 0 44aa, >abc_00014... * 1 44aa, >abc_00014... at 100.00% >Cluster 19 0 44aa, >1_6... * 1 44aa, >2_7... at 100.00% Roary-3.8.0/t/data/post_analysis/_combined_files000066400000000000000000000163151304207556500217230ustar00rootroot00000000000000>1_1 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00003 MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYV SLKEH* >abc_00004 MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHF SFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQL WWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAR EALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD* >1_2 MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR QTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS N* >abc_00006 MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHF SLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEG YWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIR QTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKS N* >1_3 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTR CAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEN SGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMG MNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPD EVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVT DEVFESKASVVFQEAENRMHTIKAVMVATLGEF* >abc_00008 MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLN YAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPA FNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKN DTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINF NTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAA LEGKVGTVIKK* >abc_01705 VENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS* >abc_00010 MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGV PSEMIKDRQRKNNGV* >abc_00011 MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQ LNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKY LKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKA FPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLK EPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFF LKKENQDKFLRNASQ* >abc_00012 MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKKERSLDNMSLKNAELLYKFANSIFSN EN* >abc_00014 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF* >1_6 MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF* >abc_00016 LGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKL TKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYI VTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVG DSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR* >2_1 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00003 MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYV SLKEH* >abc_00004 MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHF SFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQL WWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAR EALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD* >2_2 MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR QTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS N* >abc_00006 MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHF SLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEG YWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIR QTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKS N* >2_3 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTR CAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEN SGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMG MNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPD EVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVT DEVFESKASVVFQEAENRMHTIKAVMVATLGEF* >abc_00008 MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLN YAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPA FNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKN DTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINF NTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAA LEGKVGTVIKK* >abc_01705 VENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS* >abc_00010 MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGV PSEMIKDRQRKNNGV* >abc_00011 MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQ LNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKY LKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKA FPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLK EPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFF LKKENQDKFLRNASQ* >abc_00012 MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKKERSLDNMSLKNAELLYKFANSIFSN EN* >abc_00014 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF* >2_7 MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF* >abc_00016 LGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKL TKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYI VTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVG DSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR* >abc_00002 MKLFFIVSLTIIWGDIFLGNEIIHLLTALTTTLGVVNSRKGIKNFRVAQ >3_3 LTNLRGGSFLTILDFSLQEAQSLLTGAEDLKSAKYIFTETPTLKNGDIALLIEKDSLRTP RAFEVGAHDQGTNVTYLGPTRSQMGGEETTKNTARVFGGTHAGIEGGGFSQRTVETLAET PAVPVGDGLTDKDHPTLVLAHSLTAGEVLKKNYADIFFTSLADGRGDVANAIMQGAFIMA LTFHLGGPKELNPTDDLLNPRTNIAGENGGNILITDFIDPRAKGSGVIYTDIWVSIFEPA QAWKEGVELLKTYQVNLEMTHTTGNGDVIFENCLPSFHNAHTKIGGEIFEKNGIRDLEVT HAVFEGEASVVIQEADFRMPPTKAVGVATLGKF* >abc_00012 MRNQNQKLLFSDFPSLHIWGQTGVQQSTIFRMSPNERSWGNMSLKNAELFYKFPNSIFRG EN* >abc_00014 MEGLFFAITHTVTAGVNNDGTKLGTFIVTLAENGGGLLGKIFGFY >3_5 LGGKNILKDFDDFIVDPYDAEGGAFHYKANVFFHKAPNDDFWGFKKINHQHWFAFHPNKL TRGEVLSERFVNFFKHPHMEVGGHRADELFRNFLADPNVKYWGQTLEKIVELFKRHPFYI VRGGVTEKQKRRFNQTPFHKYRGKIFIYEETGFQKPPPEFFRGVFNDNGEDEFQHSPIVG DWGTSDIQGGINFGIAPCWFNWGGFDHNPGIIFDYDPNSWKRGNDIVH* Roary-3.8.0/t/data/post_analysis/_combined_files.groups000066400000000000000000000000001304207556500232210ustar00rootroot00000000000000Roary-3.8.0/t/data/post_analysis/_fasta_files000066400000000000000000000001131304207556500212260ustar00rootroot00000000000000query_1.gff.proteome.faa query_2.gff.proteome.faa query_6.gff.proteome.faa Roary-3.8.0/t/data/post_analysis/_gff_files000066400000000000000000000000711304207556500206750ustar00rootroot00000000000000t/data/query_1.gff t/data/query_2.gff t/data/query_6.gff Roary-3.8.0/t/data/post_analysis/_uninflated_mcl_groups000066400000000000000000000000001304207556500233240ustar00rootroot00000000000000Roary-3.8.0/t/data/post_analysis/query_1.gff.proteome.faa000066400000000000000000000063421304207556500233260ustar00rootroot00000000000000>1_1 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00003 MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYV SLKEH* >abc_00004 MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHF SFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQL WWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAR EALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD* >1_2 MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR QTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS N* >abc_00006 MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHF SLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEG YWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIR QTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKS N* >1_3 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTR CAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEN SGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMG MNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPD EVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVT DEVFESKASVVFQEAENRMHTIKAVMVATLGEF* >abc_00008 MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLN YAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPA FNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKN DTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINF NTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAA LEGKVGTVIKK* >abc_01705 VENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS* >abc_00010 MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGV PSEMIKDRQRKNNGV* >abc_00011 MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQ LNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKY LKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKA FPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLK EPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFF LKKENQDKFLRNASQ* >abc_00012 MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKKERSLDNMSLKNAELLYKFANSIFSN EN* >abc_00014 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF* >1_6 MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF* >abc_00016 LGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKL TKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYI VTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVG DSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR* Roary-3.8.0/t/data/post_analysis/query_2.gff.proteome.faa000066400000000000000000000063421304207556500233270ustar00rootroot00000000000000>2_1 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW TDRSSERYKIDWEKEEMTN* >abc_00002 MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE* >abc_00003 MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYV SLKEH* >abc_00004 MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHF SFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQL WWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAR EALIKNKILYTENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD* >2_2 MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR QTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS N* >abc_00006 MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHF SLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEG YWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIR QTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKS N* >2_3 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTR CAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEN SGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMG MNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPD EVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVT DEVFESKASVVFQEAENRMHTIKAVMVATLGEF* >abc_00008 MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLN YAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPA FNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKN DTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINF NTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAA LEGKVGTVIKK* >abc_01705 VENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS* >abc_00010 MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGV PSEMIKDRQRKNNGV* >abc_00011 MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQ LNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKY LKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKA FPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLK EPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFF LKKENQDKFLRNASQ* >abc_00012 MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKKERSLDNMSLKNAELLYKFANSIFSN EN* >abc_00014 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF* >2_7 MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF* >abc_00016 LGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKL TKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYI VTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVG DSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR* Roary-3.8.0/t/data/post_analysis/query_6.gff.proteome.faa000066400000000000000000000014111304207556500233230ustar00rootroot00000000000000>abc_00002 MKLFFIVSLTIIWGDIFLGNEIIHLLTALTTTLGVVNSRKGIKNFRVAQ >3_3 LTNLRGGSFLTILDFSLQEAQSLLTGAEDLKSAKYIFTETPTLKNGDIALLIEKDSLRTP RAFEVGAHDQGTNVTYLGPTRSQMGGEETTKNTARVFGGTHAGIEGGGFSQRTVETLAET PAVPVGDGLTDKDHPTLVLAHSLTAGEVLKKNYADIFFTSLADGRGDVANAIMQGAFIMA LTFHLGGPKELNPTDDLLNPRTNIAGENGGNILITDFIDPRAKGSGVIYTDIWVSIFEPA QAWKEGVELLKTYQVNLEMTHTTGNGDVIFENCLPSFHNAHTKIGGEIFEKNGIRDLEVT HAVFEGEASVVIQEADFRMPPTKAVGVATLGKF* >abc_00012 MRNQNQKLLFSDFPSLHIWGQTGVQQSTIFRMSPNERSWGNMSLKNAELFYKFPNSIFRG EN* >abc_00014 MEGLFFAITHTVTAGVNNDGTKLGTFIVTLAENGGGLLGKIFGFY >3_5 LGGKNILKDFDDFIVDPYDAEGGAFHYKANVFFHKAPNDDFWGFKKINHQHWFAFHPNKL TRGEVLSERFVNFFKHPHMEVGGHRADELFRNFLADPNVKYWGQTLEKIVELFKRHPFYI VRGGVTEKQKRRFNQTPFHKYRGKIFIYEETGFQKPPPEFFRGVFNDNGEDEFQHSPIVG DWGTSDIQGGINFGIAPCWFNWGGFDHNPGIIFDYDPNSWKRGNDIVH* Roary-3.8.0/t/data/post_analysis_expected/000077500000000000000000000000001304207556500205525ustar00rootroot00000000000000Roary-3.8.0/t/data/post_analysis_expected/accessory.header.embl000066400000000000000000000002341304207556500246340ustar00rootroot00000000000000ID Genome standard; DNA; PRO; 1234 BP. XX FH Key Location/Qualifiers FH XX SQ Sequence 1234 BP; 789 A; 1717 C; 1693 G; 691 T; 0 other; // Roary-3.8.0/t/data/post_analysis_expected/accessory.tab000066400000000000000000000000001304207556500232230ustar00rootroot00000000000000Roary-3.8.0/t/data/post_analysis_expected/core_accessory.header.embl000066400000000000000000000032351304207556500256500ustar00rootroot00000000000000ID Genome standard; DNA; PRO; 1234 BP. XX FH Key Location/Qualifiers FH FT misc_feature 11 FT /label=group_12 FT /locus_tag=group_12 FT /colour=2 FT misc_feature 10 FT /label=group_13 FT /locus_tag=group_13 FT /colour=2 FT misc_feature 2 FT /label=group_5 FT /locus_tag=group_5 FT /colour=2 FT feature 12 FT /label=hly FT /locus_tag=hly FT /colour=2 FT feature 8 FT /label=speH FT /locus_tag=speH FT /colour=2 FT misc_feature 3 FT /label=group_8 FT /locus_tag=group_8 FT /colour=2 FT misc_feature 9 FT /label=group_2 FT /locus_tag=group_2 FT /colour=2 FT misc_feature 7 FT /label=group_3 FT /locus_tag=group_3 FT /colour=2 FT feature 1 FT /label=yfnB FT /locus_tag=yfnB FT /colour=2 FT misc_feature 4 FT /label=group_7 FT /locus_tag=group_7 FT /colour=2 FT feature 6 FT /label=argF FT /locus_tag=argF FT /colour=2 FT feature 5 FT /label=arcC1 FT /locus_tag=arcC1 FT /colour=2 XX SQ Sequence 1234 BP; 789 A; 1717 C; 1693 G; 691 T; 0 other; // Roary-3.8.0/t/data/post_analysis_expected/core_accessory.tab000066400000000000000000000027761304207556500242610ustar00rootroot00000000000000FT variation 11 FT /colour=4 FT /gene=group_12 FT /taxa="query_6" FT variation 10 FT /colour=4 FT /gene=group_13 FT /taxa="query_2" FT variation 2 FT /colour=4 FT /gene=group_5 FT /taxa="query_1 query_2" FT variation 12 FT /colour=4 FT /gene=hly FT /taxa="query_1 query_2" FT variation 8 FT /colour=4 FT /gene=speH FT /taxa="query_1 query_2" FT variation 3 FT /colour=4 FT /gene=group_8 FT /taxa="query_2" FT variation 9 FT /colour=4 FT /gene=group_2 FT /taxa="query_2" FT variation 7 FT /colour=4 FT /gene=group_3 FT /taxa="query_2" FT variation 1 FT /colour=4 FT /gene=yfnB FT /taxa="query_2" FT variation 4 FT /colour=4 FT /gene=group_7 FT /taxa="query_2" FT variation 6 FT /colour=4 FT /gene=argF FT /taxa="query_1 query_2" FT variation 5 FT /colour=4 FT /gene=arcC1 FT /taxa="query_2" Roary-3.8.0/t/data/post_analysis_expected/gene_presence_absence.csv000066400000000000000000000025531304207556500255560ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_6" "group_5","","Gonococcal growth inhibitor III","2","2","1","1","2",,,"","1_6","2_7","" "hly","","Alpha-toxin","2","2","1","1","12",,,"","1_1","2_1","" "speH","","hypothetical protein","2","2","1","1","8",,,"","1_2","2_2","" "argF","","Ornithine carbamoyltransferase","2","2","1","1","6",,,"","1_3","2_3","" "group_12","","hypothetical protein","1","2","2","1","11",,,"","","","abc_00002 abc_00002" "group_13","","hypothetical protein","1","2","2","1","10",,,"","","abc_00003 abc_00003","" "group_6","","","1","2","2","","","","","","","abc_01705 abc_01705","" "group_8","","C4-dicarboxylate transporter/malic acid transport protein","1","2","2","1","3",,,"","","abc_00011 abc_00011","" "group_2","","superantigen-like protein","1","2","2","1","9",,,"","","abc_00004 abc_00004","" "group_3","","superantigen-like protein","1","2","2","1","7",,,"","","abc_00006 abc_00006","" "yfnB","","Putative HAD-hydrolase yfnB","1","2","2","1","1",,,"","","abc_00016 abc_00016","" "group_7","","hypothetical protein","1","2","2","1","4",,,"","","abc_00010 abc_00010","" "arcC1","","Carbamate kinase 1","1","2","2","1","5",,,"","","abc_00008 abc_00008","" Roary-3.8.0/t/data/prank_input.fa000066400000000000000000000065101304207556500166450ustar00rootroot00000000000000>1234_8#75_04759 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGCGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA >1111#5_04506 ATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCGGCTATCATG GATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCTATTGATAAT AAAGTTCAACCGCTTATCAGGCGTTGA >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_DT104_v1_02853 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTTTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_SL1344_v2_02736 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTGTGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_D23580_v1_02783 ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA >Salmonella_enterica_subsp_enterica_serovar_Typhimurium_str_DT2_v1_02741 ATGAGCGAGCAGTTAACGGACGTCCTGGTTGAACGGGTCCAGAAGGGAGATCAGAAA GCCTTTAACTTACTGGTAGTGCGCTACCAGCATAAAGTGGCGAGTCTGGTTTCCCGCTAT GTGCCATCGGGCGACGTTCCCGATGTCGTACAGGAATCATTTATTAAGGCCTATCGCGCG CTGGATTCTTTCCGGGGGGATAGTGCTTTTTATACCTGGTTGTATCGTATTGCGGTCAAT ACCGCGAAGAACTACCTGGTTGCGCAGGGGCGTCGTCCGCCTTCCAGTGATGTAGACGCG ATTGAAGCAGAAAACTTTGAAAGCGGCGGCGCGCTGAAAGAAATTTCGAACCCTGAGAAC TTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAA GATTTACGTATGGCAATCACCTTACGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCG GCTATCATGGATTGTCCGGTGGGGACGGTGCGTTCACGTATCTTCCGGGCGCGGGAAGCT ATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA Roary-3.8.0/t/data/proteome_with_and_without_descriptions.faa000066400000000000000000000025611304207556500245360ustar00rootroot00000000000000>1234#10_00001 MSKHGFFQITQKLFLRKGDELLILRDRKSGLGDLPGGRMNENEFFEDWSLSMQREIEEEL GSQVQIRVSTKPLFIHKHKVNEGNFPCIIIAYHADYLGGDIILSDEHDYISWEKVQTYEP SPLFTEYMLDAVNLYLKEYAPLVH* >1234#10_00002 MIIKLKIILNSYLIYYFLRGQNTLIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQ YFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALI SSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMV YSDITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFF YSNRS* >1234#10_00003 VKTTLSGEIEKLRYEVAVKIVNLQGEVLDLRAEMKINFSEVNSKILKLQFEFEMAKIRKE LKTEIADLRAETKTDFLELQKSIVDIYKTISTQTRWILGVATLFAAIGKVIN* >1234#10_00005 imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase LTDKLIGFYDPVRMKAERKTSETEIKLEMNLRGTGQYQFDTEIPFFEHMLSHISKHGLID LNLWLRGDIEIDCHHSVEDTAILMGATIHKQLGDKAGIFRYGHFTLTMDEVLTTVAVDLG GRYFFKYTGPELTGKFGIYDAELSLEFLQKLALNAKMNLHVVVHYGDNKHHVHESIFKAL GKALRMAIAQDSAAAGAIPSTKGVLE* >1234#10_00006 MIAILDYGMGNIHSCLKAVSLYTKDFVFTKDHSTIENSKALILPGDGHFDKAMENLNSTG LRKTIDKHVTSGKPLFGICIGFQILFESSEEIAQGSKKEQIEGLGYIKGKIKKFHGKDFK VPHIGWNRLQIRRKDKSVLLKGIGDQSFFYFIHSYRPTDAEGNAITGLCDYYQEKFPAVV EKNNIFGTQFHPEKSHTHGLKLLENFIRFI* >1234#10_00007 imidazole glycerol phosphate synthase subunit HisH MIVIPAIDLFDNCAVRLFKGNYEEKKIYSSEPWKLAESFAKNGATLLHLVDLNGARNQLG VNEDSILKIRETTSLKVQLGGGIRDKEKLAYYDKIGINRFILGTAAVTNPDLLKYALDNY GKERVVVAVDARDGIVKIAGWEKDSGIHYRDLLERLVKAGIEHIVFTDIAQDGTLAGPNL EAYREILNSYPFQVIASGGIASLKDLMDLSSLKTKISLYGVITGKALYEGKLDLAKAISS I*Roary-3.8.0/t/data/query_1.fa000066400000000000000000000000431304207556500156730ustar00rootroot00000000000000>1_1 AAA >1_2 BBB >1_3 CCC >1_6 FFFRoary-3.8.0/t/data/query_1.gff000066400000000000000000000472101304207556500160560ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=1_1;gene=different;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=1_2;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 ID=abc_00006;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 ID=1_3;eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=abc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 ID=abc_00008;eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=abc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 ID=abc_01705;inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=abc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 ID=abc_00010;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 ID=abc_00011;inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=abc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 ID=abc_00012;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 ID=abc_00013;inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=abc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 ID=abc_00014;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 ID=1_6;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 ID=abc_00016;eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=abc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/query_1_alternative_patterns.gff000066400000000000000000000403411304207556500223720ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=1_1 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002; abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID="abc_00004";inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID='1_2';gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product='hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain';protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 id=abc_00006;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product="superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain";protein_id=gnl|SC|abc_00006 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/query_2.fa000066400000000000000000000000431304207556500156740ustar00rootroot00000000000000>2_1 AAA >2_2 BBB >2_4 DDD >2_7 GGGRoary-3.8.0/t/data/query_2.gff000066400000000000000000000472021304207556500160600ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=2_1;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=2_2;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 ID=abc_00006;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 ID=2_3;eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=abc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 ID=abc_00008;eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=abc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 ID=abc_01705;inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=abc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 ID=abc_00010;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 ID=abc_00011;inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=abc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 ID=abc_00012;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 ID=abc_00013;inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=abc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 ID=abc_00014;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 ID=2_7;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 ID=abc_00016;eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=abc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/query_3.fa000066400000000000000000000000431304207556500156750ustar00rootroot00000000000000>3_1 AAA >3_3 CCC >3_4 DDD >3_5 EEERoary-3.8.0/t/data/query_3.gff000066400000000000000000000472021304207556500160610ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=3_1;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=3_2;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 ID=abc_00006;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 ID=3_3;eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=abc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 ID=abc_00008;eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=abc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 ID=abc_01705;inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=abc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 ID=abc_00010;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 ID=abc_00011;inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=abc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 ID=abc_00012;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 ID=abc_00013;inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=abc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 ID=abc_00014;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 ID=abc_00015;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 ID=3_5;eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=abc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/query_4_missing_genes.fa000066400000000000000000000000101304207556500206020ustar00rootroot00000000000000>4_1 AAARoary-3.8.0/t/data/query_4_missing_genes.gff000066400000000000000000000366161304207556500210030ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=4_1;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTT AAGATTTAGATACATAGACAATATAGGAGATGGGGAAATTGGGATATAAAAATATTTTGA TAGACTTTGATGATACAATTGTTGATTTTTATGATGCAGAAGAATGGGCGTTTCACTATA TGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGATTTTTTAACATTTAAAAAAATCA ATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTAACGAAGTCTGAAGTATTATCAG AACGATTTGTGAATTACTTCAAACATCATCAAATGGAAGTTGATGGGCATCGTGCAGATG TGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAATACTTTGATCAAACATTAGAAA CAATTGTCGAATTATCGAAAAGACATGATTTATATATTGTTACTAATGGTGTAACCGAAA CGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAATATATTAAAAAGATATTTATAT CTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTTTTTAATTATGTTTTTAATGATA TTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGAGATTCTTTAACATCTGACATTC TAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTTAATTTTAGAGGATTTGATCATA ATCCAGGAATTATACCTGATTATGAAATTAATTCATGGAAACAACTAAATGATATTGTAC GTTAAGACAAATAATTTGAAAATGATTTATATTAGCTTAAGAAAGTAATTGTAAAAACGA CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCC ACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA AAAAGAAATCCTTAGAATCATTTCTGCCAATGGCTTTAATTGGCATATTGAAACTCTTTG CAAAATCAATCAATTCTGAAGCGTACCCTCTGTTTTGATATTTTGGTAATACTTCTAACT TCCATAATAATATATAATCTTCAAAATCTGGGAAGTAGATTTCTTCGACATCACCTTTTT TTAGTAATGCCATTCTAGCTCCTAATTGATCTCCGACAAATATGCCATAAAATGGTGAAT CTGAACTTGCATCAATCATTTGACCGTTTAACTCATTGACCATGTATAAGTCTTTGTTGC CAAACGCTCTAAAGTTTTCGAATAATTCGTCAGTTTTGTAATTAATTTCAAGACGTTTGA TTTCACTCATATTTATCTACCCCTTATTTGTTTACTACTATTATTATACATTAAACCACT TGTGTTTTTCATTGATTTGAAAATGTAAAACAATGAACATTATAAATTTTCCATGATTAA ATTGATTTTCAAGCCGTAAAATTGTCAATCACCGGTATAGACTTTATACTATAGTTTGTA ATCGCGTACTTAAGGAGAAAAAACATGGACTGTAAAGTAGTTAGTTTAAATGAAAAAGAT CAGTTTATACCAAAAATAAAGAGCAGTGACCCTGTAATAACAGGATTATTTCAATATGAT GCAGCTCAACAAACTAGTTTTGAAAAAAGGATGTCTAAAGAAAATAATGGAAGAGAAGCG GCATTAGCGAATGTTATTCGTGAATATATGAGTGATTTAAAGCTTTCAAATGAACAAGAA TTAAACATACAACATTTAGCTAATGGTTCAAAAGTTGTGATTGGTGGACAACAAGCAGGG CTTTTCGGGGGACCATTGTATACATTCCATAAAATATTTTCAATCATTACTTTATCTAAG GAATTAACGGATACACATAAGCAACAAGTAGTACCAGTTTTTTGGATTGCAGGAGAAGAT CATGATTTCGATGAAGTGAATCATACATTTGTTTATAACGAAAATCATGGGTCGCTGCAT AAGGTTAAATATCATACAATGGAGATGCCAGAGACGACAGTCTCTAGATATTATCCTGAT AAGGCTGAGTTGAAACAAACTTTAAAAACGATGTTCATTCATATGAAAGAAACTGTTCAT ACACAAGGTCTACTGGAGATTTGTGACAGAATTATTGACCAATATGACTCGTGGACTGAT ATGTTTAAAGCACTACTGCATGAAACATTTAAAGCATATGGCGTTCTATTTATAGATGCG CAGTTTGAGCCGTTAAGAAAAATGGAAGCGCCTATGTTTAAAAAGATTTTGAAAAAACAT CAGTTGCTTGATGATGCTTTTAGAGCAACACAACAACGTACTCAAAATCAAGGCTTGAAT GCGATGATACAAACAGATACAAATGTTCATTTATTCTTACATGATGAAAATATGCGCCAA TTAGTTTCGTATGATGGTAAGCATTTTAAATTAAATAAAACAGATAAGACATATATAAAGRoary-3.8.0/t/data/query_5.gff000066400000000000000000000472021304207556500160630ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=3_1;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_50002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_50003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_50004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=3_2;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 ID=abc_50006;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 ID=3_3;eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=abc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 ID=abc_50008;eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=abc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 ID=abc_51705;inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=abc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 ID=abc_50010;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 ID=abc_50011;inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=abc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 ID=abc_50012;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 ID=abc_50013;inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=abc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 ID=abc_50014;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 ID=abc_50015;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 ID=3_5;eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=abc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATTTTAAAAACTCCCCAAGCTGTAATTTAAGGGGGTTCTTTAAATTAT ATACCCACCACATTTTTTGGAGAACCCCAAACTAGCCGAAAAGGGGCATTTCTGAAGTTA ACGGCTAAAGTTATTTTTTATATTTCCCTGTCCATGAACAAAGGGGTTACATTAATTTGT AATTTCTTCTTTTTTTTAATCGATTCCCTATCTTTCTGAAGAGGGGTCTGTCCATTTATC ATTAGTATTGGTACTTTTCCAATTTCCCGAACTCCAATGCAAGGGGTAGTCATCACGAAC ACGTTCGTATATTATTTCTATATTTCCCTGTCGTTTGGATGCGGGGCTATCCATAGTAAT AACTGTAGCGAAGTTTTGTGAAAACCCCGAACATAATAGAGAGGGGGCTTTGTTAGGATC AAGGAAGTTCTCTGTTTCTTTCATACCCCCACTTCTAGTTTTGGGGAAAAGTTGATTGCC ATATACCGGGTTCCTTTAATCTCTACCCTATCGTCCCCAATTGGGGTTCACCATATTGTT AAATATCACTTTCCTTTCTACTTTTCCCTCACTTGGGCTCTCGGGGATTGTTTTGAAATC AGGTTGAACATATTTTTGTGTATGACCCATCCAAACATTTGCGGGGATAAGGCCGCCAAT ATTTCCTGTATCATTTTCAGTAACACCCCCGCTGAATCCATAGGGGAAAGTACTCATATA ATCTTTTGTATCAATTTAATTTCTTCCCTAGCAATCAGATATGGGGGCTACTTCATTATC AGGTAGTTGCAACTTTTCCTTAAAGCCCGAACGCCAGGCTAAGGGGCTTTTGTTAGCACC ATCTTCGCTATAAATTTTATATTGACCCGCACTGGTACCTTTGGGGCTAATAACTAGCAG ATTTTTATTGTGATTTTTATCATCGCCCAAACTATAAAATACGGGGTTGTGCATGCCATT ATCTTTATCATAAGTTTCTAAATCACCCGTTCTTACTGTAGTGGGGCTTCCAATATCTGT AGTACCGGTTTTAATTTTAATATCACCCTCTCCGGCATTAGCGGGGGGATTCATTAATAT AGAACCTAGCAATATTTTTGTTGTTCCCGAGCTGACTATACGGGGGTTCATTTTCATCAT ACTTCTATTTTTTTTTTCGATTTGACCCAACCATAATCAATAGGGGAATTTAGAATATTG AAGTTGAGACATATTTTATATTTATCCCCGTCTATATTAGTAGGGGTAATGTAGCAACTG ATAAATTACTGAGTTTTGATGAGTGCCCATTCTAAGAATATGGGGGTAACTTTTATTTAA AATTTGAAAGGAAGTTTTTCAATTTCCCGGGCTAGTCAAAGTGGGGTAAATTCTTTATGA AACAAGGAAAAGACTTTGCTAATTTCCCTGACTAATTTCTTTGGGGCTAATGATTTGTTT AATTTAAAAATGTATTTGATTACAACCCAAACATACAAATATGGGGGAATTAAATCAATT AATTAACTATTAAATTTAAATTAAACCCATACTAACTACTGTGGGGTAATAAATAGAAAT AGAGAAAAAGGGTATTTATTATGTTCCCAATCTCGTCGGGAAGGGGTTTTGCCATTACAT AGAAATATCTAATATTTAATGAAAACCCATCCTATGTATTTTGGGGATAGTGTAAAATAT AATATGTAAAATAATTTGTAGATTTCCCGTTCGAGGCATTATGGGGAAATTTTGAGTATA AGTTAGCTTTTAATTTTGAATCTTACCCAAACTTGATTAATAGGGGTATGATAGGGGATT AAAATGAAACTATTTTTTATCGTATCCCTTACTATTATATGGGGGGATATATTTTTAGGA AATGAAATTATCCATTTACTGACTGCCCTAACAACAACATTGGGGGTTGTTAATTCAAGA AAGGGGATTAAAAATTTCAGAGTTGCCCAATCTTATAAACTCGGGGCAATCTTTGTTTGA ATCTGAATCAGGCTTTTAAATTTCGCCCAATCCAGGAGTTCCGGGGCAAACAGTACAAGA ATTAAGAAATGGGATTTCCAAACTACCCGATCCTAGATTTAGGGGGATTATTAAACTTTA AAGTTACTATGTCTTTTTAAAAGAACCCTAACCATGGGACAAGGGGGTATTGCTATAATA ATTGAATCATTAAATTTAGGAATAGCCCCTACGACATAATAAGGGGATGTCTTAGGCTCT ACAATATTATATTGTTTGTAGTTGACCCAATCAAAATGACCAGGGGACAAGCATTTTTGG AGCCCCAACACAGATTTTGACGAAACCCCAGCTTACAATAATGGGGAAGTTGGGGATGGG ACCCAACACAGAGATTTTCAAAAAGCCCTTCCACAGACAATGGGGGTTGGCGGGGCCCCA ACATAGAGAAATTCTTTAAGAAATTCCCCAGCCAATGCAAGTGGGGGAGTGACAACGAAA AAAATTTTATAAAATTTCATTTCTGCCCCATCCCTACTCCCAGGGGCATTTAAATATATA AAAAATTTCACCTATTTTATACATCCCCCACCTTAAAAATTAGGGGTTAAATAATCTGAT ATGGAATTAAAGTGTTTGAAGTATACCCCACCTTCATATACTGGGGAAAGAGGACGTCAA AAGTTATTTTATTATTTTTTTTAACCCCAACCTTTGCTAGATGGGGATGTAATCTTTTGC ATAAATCAATAGTGTTTTTATTACCCCCACCCGTGATCTTAAGGGGACCTTTATTACGAT ATTCGGTATATAATTTTTTATTTTTCCCTAACGCTTCTCGTGGGGGGAAATCGATTTCTT ACAATGTTAATACTTTTTTATTGCCCCCGTACATTTTATGCGGGGGAATAATCGTTTGTA ATTTATCTTTGTATTTTACAAAAAGCCCATACGTTTTATCAGGGGGTTTTGCGGCTGGTG AAACGCCACCTGTATTTGTCTCTCTCCCAGACCACCATAACTGGGGAGTATCTTTGTCTT ATAGTCCAAACACATTTACGTAACGCCCTTTCAACTGATTAAGGGGTCCCCAACTTTCAG AGCCCCATAAAGATTTTTGTGCTGACCCTGACTATCTCTTAAGGGGAACATAAATGTTTC AATTATCATATTGATTTAGCCATTTCCCTGACAATGAAAAATGGGGCTGTGTGTAATATT AAATTAATTCATTGTTTTTAGTTTCCCCTTGCCCAATGCTATGGGGTTTAGCTTCAGAGT AAAAACTAAATACTTTTTTTTGATTCCCAGGCAATACAGTACGGGGTAGTAATAATGTTG ACGTTAAAATTATATTTTTCGTGATCCCCTTCCTCATTAGAAGGGGTCCTTTCAGAGGAA ACATGATACGAGGATTTAGAAATTTCCCTGTCAGCGAAGTCAGGGGAGTATTTGCGATTA ATTTTATTAACTCCTTTATTATTGTCCCTTTCATTTTTCGAGGGGGACTTCAATTTTTGC ATTTTGAGGTTTTTTTTCATATCTACCCGCACCAGTTGATGGGGGGCTTTTACTTAAATC AATTGTGTAGTTATTTTCTGTACCTCCCATTCTAATTTGTCCGGGGTTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATCCCTGACGAATACGAAAGGGGAATTCTTTTAAAGT AAAAACAGGCTTATTTTCTTCATAACCCGGACATCCGCCAGTGGGGGTTTCTGCTTTATC ATTATATGTTACATTTTGTTTATAGCCCTTACCGTTAGATGTGGGGGCAGGAGTAACACC ACCAGTAAACGTTTTTTGAGATAATCCCAAACAATCAATGGTGGGGTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTCCCTGGCTGATATTGCCGGGGCTTTCAGGTCCATA AACTTGAATATGACTTTACCAAGAACCCTGTCACAACGTTGCGGGGATCGTACCGTTATC ATTTTGCCATAACGTTTTGTTAGAGCCCGTTCAATATTTTTGGGGGTAATATTTAGTTAA ATCATTAACGTTAGTTTCGTTTTGACCCATACAATAAGCTTTGGGGTCAGATGAAGAATT AATAGGTGTATTAGTTTATTGTGTACCCGCTCTACCTAATAGGGGGAATGTTGTTGATAA AATAATTTTTTTCGTTTTGTTATTGCCCATTCGAATTTCTCCGGGGAGTATTGTTGGAAT ATTTAATTATAAAATTTGGTTAATTCCCTAACTGAAATTATCGGGGTTTACAAAAGGTAA AAGGTTAGTTAGATTTTTCGAGTATCCCTTCCATTTGTGCATGGGGAGGATTTTTAACAT AACGGTTTGTGTCATTTAATTTTAACCCTTTCCTTAAATCAAGGGGGTAATTATTTCCAT AAGCAGTTATCTTATTTTGACCTTTCCCAAACTCTCCGTTATGGGGCTTTTTATTCTTTA ATAATGTTTGACGATTTCGGAAATCCCCTTCCTTTAAAGTTAGGGGTGGTTTATTTCCTT AGTAAAATTCATGTTTTCCGATGATCCCTTGCTGTTTATCACGGGGTTTTAAAAATAGTC AATAAGGTTTATCATTTGAAGTAGCCCCTGGCGTAACACCACGGGGAAATGTTTCATCAT AAGTCCAGTAACCTTTTACTGTGTCCCCATCCTTAGTTCCAAGGGGATCAACGTATTTAT ATCTTAACTGATTATTTTTTCCCCACCCCTCCGATCCAAACAGGGGAATATGACTATACC AAACCCACGTTTGCTTTGTTGCATGCCCGCTCCCATTGGGCTGGGGCCATAGCCATTTTC AAGATAATGAAAAATTTGGCTGAGTCCCATACTTGATTAACTGGGGGATATTAGTCTCGT ATTCACTGATATTATTTGCTTTTGCCCCAGACGAAAAACTGAGGGGTGTTTTAGGAAGTT ATGTTGATGTGGTTTTTAAAAGTAACCCTGCCGTTGATAAAAGGGGTTTATTCATGATGT ACTTTTTCATATGATTTTCTCCTTTCCCTGACTTACCCAAAGGGGGTAAGCTATTACACC AATTCGGAATTAAATTTAAGCTAAACCCATGCTAAATAAACTGGGGCAGTTAGTAGTGTT ATTTAAGCAAAACTTTTCATTTTTACCCTTTCGACAGAAACAGGGGTTAATAAAGTAGGC AGGAGTTATATATTTTTAACGACACCCCACACTTATTCTCTAGGGGATTGCATTAAATTG ATTGATAATTGAATTTTCTAACTACCCCAAACATAGTTATACGGGGAATGTAGTACTTAT ATTAATTATTTCCTTTTACTTAAATCCCATACTAATAAAATGGGGGTTTAATTATTGATA AAATATTACAAATTTTTATAGTAGGCCCTGTCTATTTTGTATGGGGTTACAATTTAGGTG AAACTAAAATAAAATTTGTTGTTATCCCTGACAAATTTACGAGGGGGAAGTTTTTTAACT ATATTAGACTTTTCTTTACAAGAGGCCCAATCCTTATTAACAGGGGCCGAGGATTTAAAA AGTGCTAAATATATTTTCACTGAAACCCCTACGTTAAAAAATGGGGATATTGCACTGTTA ATTGAAAAAGATTCTTTAAGAACGCCCCGTGCATTTGAAGTTGGGGCGCATGATCAAGGT ACAAATGTAACTTATTTAGGCCCAACCCGATCACAAATGGGTGGGGAAGAAACAACTAAA AATACTGCACGTGTTTTTGGTGGAACCCATGCTGGCATTGAAGGGGGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAACCCCAGCCGTACCAGTGGGGGATGGTTTAACTGAT AAAGATCATCCTACTTTAGTTCTTGCCCATTCCTTAACAGCAGGGGAAGTCTTAAAAAAA AATTATGCAGATATTTTCTTTACATCCCTTGCAGATGGTCGTGGGGACGTTGCAAATGCA ATAATGCAAGGTGCTTTCATTATGGCCCTGACCTTCCATTTAGGGGGTCCAAAAGAATTA AATCCAACAGATGATTTATTAAATCCCCGTACAAATATTGCCGGGGAAAATGGTGGCAAC ATATTAATCACAGATTTTATTGACCCCCGTGCAAAAGGTTCGGGGGTAATTTACACTGAT ATTTGGGTATCAATTTTTGAACCTGCCCAAGCATGGAAAGAAGGGGTTGAATTATTGAAA ACATATCAAGTAAATTTAGAAATGACCCATACAACTGGTAATGGGGATGTTATTTTTGAG AATTGCTTACCATCTTTCCATAATGCCCATACGAAAATTGGTGGGGAAATTTTTGAAAAA AATGGTATTCGAGATTTGGAAGTTACCCATGCAGTATTCGAAGGGGAAGCTTCAGTTGTA ATCCAAGAAGCTGATTTCAGAATGCCCCCAACCAAAGCAGTCGGGGTTGCTACATTGGGT AAATTTTAAATGATTTTAGGAAGTGCCCATGCTGGCGAAAATGGGGGTAGCATTAGGTGG AAATGCTTTAGGAATTTCACCTCAACCCCAACTCGAGCTTGTGGGGAATACTGCGAAATC ATTAGTAGGATTAATTTCAAAAGGACCCGAGCTTGTTATTAGGGGGGGTAATGGACCACA AGTTGGAAGCATTATTTTGGGACTTCCCTATCCTGCAGAACAGGGGCAAGGTCCGGCATT ACCATTTGCTGAATTTTGCGCAATGCCCCAACCTTACATCGGGGGGCAATTACAAGAAAG ATTACAAAATGAATTTTATTCTATTCCCATGCATAAACAAGTGGGGACACTAGTGACACA AGTTGAAGTTGATGTTTATGATCCGCCCTTTCACAATCCTTCGGGGCCAATTGGGTTATT ATACAACAAAGAAGTTTCTGAACAACCCCAACAAGAAAAAGGGGGGATATTTGTTGAAGA AGCTGGAAGAGGATTTTGACGCGTTCCCCCTCCACCACAACCGGGGTCTATTATTGAATT AGAGAGTATTAAAATTTTTATTAAACCCGATCCACTCGTTATGGGGGCTGGTGGTGGAGG AATACCAGTAATTATTTAGCAACATCCCGGTCTTAAAGGTATGGGGGCAGTTATAGACAA AGATAAAACAAGTGTTTTGTTGGGTCCCAATCTTCAATGCGAGGGGTTGATTATTTTAAC AGCAATTGATTATGTTTATATTAATCCCAACCCTGAAAACCAGGGGCCTTTGAAAACAAC AAATGTTGATGAATTTTAACGATATCCCGACCAAAATCAATTGGGGAAAGGAAGTATGTT ACCAAAAATTGAAGTTTCCATATCACCCATTCAAAACAATCCGGGGGGAAGTGTGCTTAT AACATCATTAAATGTTTTAGATGCTCCCTTACAGGGTAAAGTGGGGACTGTGATTAAAAA ATAATTGAATTGAATTTCTTTTCAACCCCTACATGTCAAATGGGGGATTTTTATTATTTA AGTGCACCCCCTGATTTTAATGCCTCCCTTTCGATGCGGGGTGGGGTTTCTTAATTTATA ATTATAAAATCTTTTTTGTAGAAATCCCAGGCTAAATGTCGAGGGGGATGAAACCGTGGA AAATACAATTAATGTTTGTGAAAAGCCCAAACGATTTAAATTGGGGATGCCAGGTGCATT AATGATTTTATTCATTTTAACGGTTCCCGCACTTATAGCAACGGGGGTTATTCCTGCTGG AGCATATTCTAAACTTTCTTACGAACCCTCACCCCAAGAACTGGGGATAGTTAACCCTCA AAACCAAGTGAAAATTTTTCCGGGTCCCCAACAGGAACTAGAGGGGATGGGGGTTAAAAT AAAGATTGAACAATTTTAATCAGGTCCCATTCATAAGCCAGTGGGGATTCCGAATACTTA AGAAAGATTAAAGCTTTATCCAGCTCCCCCACAACAAATAACGGGGAGCATGGTTGAAGG AACGATAGAAGCGGTTTATATCATGCCCTTCCTTCTTGTACTGGGGGGACTTATTGGCGT AGTTCAAGCCAGTGTTTCTTTTGAACCCGGACTGTTAGCTTTGGGGAAGAAAACAAAAGG ACATGAATTTATGCTTTTTGTGTTTCCCTCACTACTAATGATGGGGGGCGGGACGTTATG AGGTATTGAAGAAGTTTCTGTAGCACCCTATCCGATTTTAGTGGGGATATTTATAGCGTT AGGATACGATTCTATTTTTTCAGTTCCCGCCCTATTCCTTGCGGGGTCTGTCGGTAGTAC ATTTTCAACTATTATTTCGTTCTCGCCCGTACTTGCCTCTAAGGGGGCTGGTACAACTTT AACGGATGGCTTGTTTTGGAGAATACCCGCTCGTATTGTCGGGGGGATTTTTGTTATTAG ATATTTATATTGGTTTTGTAAAAAACCCAAACACGATCCTAAGGGGTCATATTCTTATGA AGACAAAGATGCTTTTTAACAGCAACCCTCTCTATTAAAAGAGGGGGATAGTGCCCATTT AACTTTGCGTAAGATTTTAATCCTTCCCTTACTTGTACTACCGGGGCCAATTATGGTATG AGGAGTTATGACGCTTTGTTGGTGGCCCCCACTTATGGCTTCGGGGTTTTTAATATTTAC AATTATAATAATGTTTTTTGCTGGGCCCGGTCAATCTGGATTGGGGGAAAAAGGAACTGT AGATGCATTTGTCATTTGTGCATCACCCTTACTAGGTGTATCGGGGATTATTGGTTTAGC ACGAGGTATTAATTTTTTGTTGAATCCCGGTCTGATTTCAGAGGGGATCTTACACTTTTC ATCATCTTTAGTTCTTTATATGAGTCCCCCACTATTTATCATGGGGTTACTATTTATTTT ATTCTGTTTAGGTTTTTTCGTGCCACCCTCTCCTGGATTAGCGGGGTTATCAATGCCTAT ATTTGCACCACTAGTTTATACAGTACCCATACCAAGATTCGTGGGGGTTACGACATATCA ATTTGGTCAATATGTTTTGTTATTCCCCGCGCCGACTGGACTGGGGATGGCCACACTACA AATGTTAAACATGCTTTATTCACATCCCTTCCGATTTGTATGGGGGGTAGTTGCTTTTGT ATTGATTTTCGGTGTTTGAGTACTACCCACGCAAGTACTAATGGGGTCATAATTTGAAAT ACTATATTATAAAATTTCTAATTGGCCCTTACGCATCTCGTAGGGGTGTAGAAATACTAA ACTAAGCGAGGTGCTTTATTATTTTCCCTTACGAAAATAATGGGGGTAATGATAACACTA ATAAGTAATTGATATTTTGCTCTATCCCATACTGATATTTTTGGGGTTTGTTTTTAATGT AATGTTAGATCTATTTTATATTATACCCATCCTGGTAAATATGGGGTTGCTGTAAACAGT ATTTGTAACACATGTTTCATATGGTCCCGAACATAGCATATAGGGGGGATGGCTATAAAT AACACATTTGACAATTTTTTTAGATCCCCTACCTGGAATATGGGGGGTATTATTATTTAG AAAATATTTTGTGGTTTATGCAAATCCCGTGCTTGATTGGAAGGGGAGATGGTATTTGCT AGAAAACATACCACTTTTGCCAATTCCCTTACTTATTCTGATGGGGATTTTCGGAGTACC ATCTGAAATGATAATTTATAGGCAACCCAAACATAACGGTGTGGGGTTTATCGATATTTA AAGGTGATAAAATTTTTCAACTATTCCCAAGCCTAAAATAAAGGGGTTTATTAATTATTT AATTGGTATATTAGTTTTGGCGTTTCCCGCTCATATATTATTGGGGTAAAGGTTAGAGTG AAACGTGTTTATGATTTAGACGTTCCCCTATCGTTACTACAGGGGGAGTCAGAAGGTATC ATTGATAAGATCATTTTAAATCAAACCCGCACTGATATACACGGGGAAGAGGCAAGATTA ACTGCCTCTTTTTTTTTTATTAAATCCCCGTCTTAATTCTTGGGGGTAGTGTTACTGAGA AGCATTACGAAGAATTTTATCTTGACCCTCCCTTTTTAAAAAGGGGTGAAGATATCCTAT AAAGACTCTAAGTATTTTTACAGTGCCCAATCACACTTCGATGGGGAAAAGACCTTTCCA AATATCTGGAAACATTTGTACAGGCCCCCTGCTCTTTAAAGCGGGGGCTGAGATTACTAA AGGGAATGTGAAAGTTTAAAATACGCCCGAACAAGGTTCTTTGGGGAATTTAGGCAATTG AATAATGATATAAATTTAAAATATTCCCGCTCATATTAAAAAGGGGATTACGATAAAAGC ATTCGCCTTAGGAATTTCTATAACACCCGCTCCAGCGACTAAGGGGAATGGTGCACAAAT AGTCGATGTGTTCGTTTTGATTGACCCCTGCCATGGAAATGCGGGGAATCGCTTGAAAAC AATAGGTAAGACAATTTAAGTAGCTCCCAAGCCATATATTACGGGGAATTGACCTATGAA AAAACATCCGCTAATTTGTGCCGTCCCCCCTCCGATAGCAATGGGGATAAAAAGTACAGT ACACGAAGGATAAATTTTTTCAAGTCCCAAACCTTTTAAATAGGGGATTGAAAAAATAAT AATATGCGTCATAATTTCCACAAGGCCCAAACTCCAAATAGGGGGGATTAAGCTATTGAT AAAAGTTATGTTACTTTAAAATGTACCCAAACAAGTAGTACCGGGGAAGCCAGACATGAA AAATGTTGTGAACATTTATGAAACTCCCGGACTGTTTAATTGGGGGTTCACATTATTAAA ATATTTGATCATAGTTTATAAAAGGCCCATCCAAATCAAGAAGGGGAAGATTCCGCAAAC AGCGTTTAAAGTAATTTATAAGTCTCCCAATCGATTACCCAGGGGGAATAATCCTAAGAC AAGTCCTGACGTTATTTGAGGTGCTCCCTGACGTCTCATGATGGGGAACCTTTCTTATGT AATTTTCTTCACTATTTATATCATGCCCGCTCTGGCCAATTAGGGGGAAGAGTGTGTACT ATTACGTTATTAGATTTTGTATATTCCCTTGCTAGACACATAGGGGACATTTAAATCTCA AAATTAATGATATTTTTGGTATGCTCCCCAACCTAAATATTGGGGGATGTGGAAAAGTAA ATATTTAATTTAAATTTTGATTGAACCCTTACAAGGGGGTGTGGGGAATGAGAAATCAAA ATCAAAAACTATTATTTAGTGATTTCCCCAGCTTACATATATGGGGACAAACAGGAGTTC AACAAAGCACAATATTTAGAATGAGCCCAAACGAAAGATCATGGGGCAATATGTCATTGA AAAACGCTGAACTATTTTATAAATTCCCCAACAGTATATTTAGGGGTGAAAATTAAGAAG AATAATTAGTGAGTTTTATAATTAACCCACCCCGTCTCGATGGGGGTGGTTATTTTTTTA AATGTATTTAATTATTTGATTTCGGCCCCCTCAAAAGTCCCTGGGGTTTTGAATAGTATC AAAATCTATAGGAATTTTATAATAACCCAAACCTCTACGCATGGGGATGGTGAGTGTTAA AAATCTTGGTGTAGTTTTGGTGTAGCCCAGGCGCAGTATAGAGGGGATTTGAGCACAAAA ATACTTAATTAAAATTTTATAAACACCCGTCCGACGCGTGTCGGGGGTGTGTCAAAAAAT ACTATGACGAATAATTTTGCTTGTTCCCATTCCTGTATTTTCGGGGCTTATGCGGGGGAC ATTTTGGTGACGCATTTTACTATATCCCTGACATTCAAAACAGGGGGAGCCCCGTAATCA AGGAACTCTTTTGTTTTGTAATGCGCCCAAACATACCTATAAGGGGCCTGGGAGGGATTC AAACCCCCGACCGATTTCTTAGAAGCCCATTCCTCTATCCAGGGGGGCTACCAGGACACG ATTAACAACACAAGTTTTATTATATCCCAATCAACTTAAATTGGGGATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTCCCGAGCTATTTATCTAGGGGGGTTCAATAAGACT AAAATGCGAATTCATTTAACTTAATCCCGTTCAATACAGTTTGGGGTGCCTAACTGTATT ACTTTTCTCTTTAATTTACAGTTAACCCCATCATAAGATGTTGGGGGGATAAACAAACTA ATTGCATCAAATTTTTTTTAAAATACCCACACCAAAACGTTAGGGGAATAACATTTCGGT AATTTAAAAGCTACTTTCGTTTTTGCCCTCTCCAAATTTAAAGGGGAAGGAGTGTTTTCA ATGGAAGGTTTATTTTTCGCAATTACCCATACCGTAACTGCAGGGGTTAATAATGATGGC ACAAAATTAGGCACTTTCATTGTGACCCTCGCTGAAAATGGCGGGGGTTTATTAGGTAAA ATATTCGGATTCTATTTTCAATATGCCCTGTCAGTAATCAGTGGGGTTTCAAAGGTGAGG AAGAGATTTAAATGTTTGGACTAGCCCCAGCCATCGCAAATAGGGGGCAAGCTGCACAAC AACATGATAGTGTGTTTTTAGGCACCCCTATCGTAGACATCGGGGGTAACGGTGTGGGTT AACTAGGTAAATTATTTGGATTCTACCCTAACAACTAATATTGGGGAAAATAAACTGGGT AAGCATACTTTAATTTTATGCACTCCCCTTACTTTATTTGCAGGGGTTTGAGCCTCTGTT AAGATTTAGATACATTTACAATATACCCGATCGGGAAATTGGGGGGTAAAAATATTTTGA AAGACTTTGATGATTTTATTGTTGACCCTTACGATGCAGAAGGGGGGGCGTTTCACTATA AGGCGAATGTTTTTTTTCATAAAGCCCCAAACGATGATTTTTGGGGATTTAAAAAAATCA ATCACCAACATTGGTTTGCTTTTCACCCAAACAAATTAACGAGGGGTGAAGTATTATCAG AACGATTTGTGAATTTTTTCAAACACCCTCACATGGAAGTTGGGGGGCATCGTGCAGATG AGTTATTTAGAAATTTTTTAGCAGACCCTAACGTTAAATACTGGGGTCAAACATTAGAAA AAATTGTCGAATTATTTAAAAGACACCCTTTCTATATTGTTAGGGGTGGTGTAACCGAAA AGCAAAAGAGAAGGTTTAATCAGACCCCGTTCCATAAATATAGGGGAAAGATATTTATAT ATGAGGAAACAGGATTTCAAAAACCCCCTCCCGAATTTTTTAGGGGTGTTTTTAATGATA ATGGTGAGGATGAATTTCAGCACTCCCCTATCGTTGGAGATTGGGGAACATCTGACATTC AAGGTGGAATCAATTTTGGTATAGCCCCTTGCTGGTTTAATTGGGGAGGATTTGATCATA ATCCAGGAATTATATTTGATTATGACCCTAACTCATGGAAACGGGGAAATGATATTGTAC ATTAAGACAAATAATTTGAAAATGACCCATACTAGCTTAAGAGGGGAATTGTAAAAACGA AACTACGAAAAGATTTTTTTTCATGCCCGTACTGTCGAATATGGGGATCTTATGGTTTCC ACAATAAGACATCATTTCCCTCTATCCCTTTCGCTTCCACATGGGGAAATCCATGATGTA AAAAGAAATCCTTATTTTCATTTCTCCCAATCGCTTTAATTGGGGGATTGAAACTCTTTG AAAAATCAATCAATTTTGAAGCGTACCCTCTCTTTTGATATTGGGGTAATACTTCTAACT ACCATAATAATATATTTTCTTCAAACCCTGGCAAGTAGATTTGGGGGACATCACCTTTTT ATAGTAATGCCATTTTTGCTCCTAACCCATCCCCGACAAATAGGGGATAAAATGGTGAAT ATGAACTTGCATCATTTATTTGACCCCCTAACTCATTGACCAGGGGTAAGTCTTTGTTGC AAAACGCTCTAAAGTTTTCGAATAACCCGTCCGTTTTGTAATGGGGTTCAAGACGTTTGA ATTCACTCATATTTTTTTACCCCTTCCCTGTCTACTACTATTGGGGTACATTAAACCACT AGTGTTTTTCATTGTTTTGAAAATGCCCAACCATGAACATTAGGGGTTTTCCATGATTAA ATTGATTTTCAAGCTTTAAAATTGTCCCTCACCGGTATAGACGGGGTACTATAGTTTGTA ATCGCGTACTTAAGTTTAAAAAACACCCACTCTAAAGTAGTTGGGGTAAATGAAAAAGAT AAGTTTATACCAAATTTAAAGAGCACCCACCCTGTAATAACAGGGGTATTTCAATATGAT ACAGCTCAACAAACTTTTTTTGAAACCCGGACGTCTAAAGAAGGGGATGGAAGAGAAGCG ACATTAGCGAATGTTTTTCGTGAATCCCTGACTGATTTAAAGGGGGCAAATGAACAAGAA ATAAACATACAACATTTAGCTAATGCCCCAACAGTTGTGATTGGGGGACAACAAGCAGGG ATTTTCGGGGGACCTTTGTATACATCCCATACAATATTTTCAGGGGTTACTTTATCTAAG AAATTAACGGATACTTTTAAGCAACCCCTAGCACCAGTTTTTGGGGTTGCAGGAGAAGAT AATGATTTCGATGATTTGAATCATACCCTTGCTTATAACGAAGGGGATGGGTCGCTGCAT AAGGTTAAATATCATTTAATGGAGACCCCAGCGACGACAGTCGGGGGATATTATCCTGAT AAGGCTGAGTTGAATTTAACTTTAACCCCGACGTTCATTCATGGGGAAGAAACTGTTCAT ACACAAGGTCTACTTTTGATTTGTGCCCGAACTATTGACCAAGGGGACTCGTGGACTGAT ATGTTTAAAGCACTTTTGCATGAAACCCTTACAGCATATGGCGGGGTATTTATAGATGCG AAGTTTGAGCCGTTTTTAAAAATGGCCCCGCCTATGTTTAAAGGGGTTTTGAAAAAACAT AAGTTGCTTGATGATTTTTTTAGAGCCCCACCACAACGTACTGGGGATCAAGGCTTGAAT ACGATGATACAAACTTTTACAAATGCCCATTCATTCTTACATGGGGAAAATATGCGCCAA ATAGTTTCGTATGATTTTAAGCATTCCCAATCAAATAAAACAGGGGAGACATATATAAAGRoary-3.8.0/t/data/query_6.gff000066400000000000000000000472021304207556500160640ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=3_1;gene=hly;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=3_2;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 abc|SC|contig000001 Prodigal:2.60 CDS 4265 4990 . - 0 ID=abc_00006;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13043,protein motif:Pfam:PF02876.11;locus_tag=abc_00006;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00006 abc|SC|contig000001 Prodigal:2.60 CDS 5428 6429 . + 0 ID=3_3;eC_number=2.1.3.3;gene=argF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P99073,protein motif:CLUSTERS:PRK04284,protein motif:Cdd:COG0078,protein motif:TIGRFAMs:TIGR00658,protein motif:Pfam:PF00185.1;locus_tag=abc_00007;product=Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Ornithine carbamoyltransferase,ornithine carbamoyltransferase,Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain;protein_id=gnl|SC|abc_00007 abc|SC|contig000001 Prodigal:2.60 CDS 6449 7384 . + 0 ID=abc_00008;eC_number=2.7.2.2;gene=arcC1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q7A627,protein motif:CLUSTERS:PRK12353,protein motif:TIGRFAMs:TIGR00746,protein motif:Pfam:PF00696.22;locus_tag=abc_00008;product=Carbamate kinase 1,putative amino acid kinase,carbamate kinase,Amino acid kinase family protein;protein_id=gnl|SC|abc_00008 abc|SC|contig000001 RNAmmer:1.2 rRNA 7556 9112 . + 0 ID=abc_01705;inference=COORDINATES:profile:RNAmmer:1.2;locus_tag=abc_01705;product=16S ribosomal RNA abc|SC|contig000001 Prodigal:2.60 CDS 9419 9646 . + 0 ID=abc_00010;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00010;product=hypothetical protein;protein_id=gnl|SC|abc_00010 abc|SC|contig000001 Prodigal:2.60 CDS 9952 10899 . - 0 ID=abc_00011;inference=ab initio prediction:Prodigal:2.60,protein motif:Pfam:PF03595.11;locus_tag=abc_00011;product=C4-dicarboxylate transporter/malic acid transport protein;protein_id=gnl|SC|abc_00011 abc|SC|contig000001 Prodigal:2.60 CDS 11148 11336 . + 0 ID=abc_00012;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00012;product=hypothetical protein;protein_id=gnl|SC|abc_00012 abc|SC|contig000001 Aragorn:1.2.34 tRNA 11803 11878 . - 0 ID=abc_00013;inference=COORDINATES:profile:Aragorn:1.2.34;locus_tag=abc_00013;product=tRNA-Arg(tct) abc|SC|contig000001 Prodigal:2.60 CDS 12241 12375 . + 0 ID=abc_00014;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00014;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00014 abc|SC|contig000001 Prodigal:2.60 CDS 12432 12566 . + 0 ID=abc_00015;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P11699,protein motif:Pfam:PF05480.5;locus_tag=abc_00015;product=Gonococcal growth inhibitor III,Staphylococcus haemolytic protein;protein_id=gnl|SC|abc_00015 abc|SC|contig000001 Prodigal:2.60 CDS 12699 13385 . + 0 ID=3_5;eC_number=3.-.-.-;gene=yfnB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:O06480,protein motif:CLUSTERS:PRK09449,protein motif:TIGRFAMs:TIGR02254,protein motif:Pfam:PF00702.1;locus_tag=abc_00016;product=Putative HAD-hydrolase yfnB,dUMP phosphatase,HAD hydrolase,haloacid dehalogenase-like hydrolase;protein_id=gnl|SC|abc_00016 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATTTTAAAAACTCCCCAAGCTGTAATTTAAGGGGGTTCTTTAAATTAT ATACCCACCACATTTTTTGGAGAACCCCAAACTAGCCGAAAAGGGGCATTTCTGAAGTTA ACGGCTAAAGTTATTTTTTATATTTCCCTGTCCATGAACAAAGGGGTTACATTAATTTGT AATTTCTTCTTTTTTTTAATCGATTCCCTATCTTTCTGAAGAGGGGTCTGTCCATTTATC ATTAGTATTGGTACTTTTCCAATTTCCCGAACTCCAATGCAAGGGGTAGTCATCACGAAC ACGTTCGTATATTATTTCTATATTTCCCTGTCGTTTGGATGCGGGGCTATCCATAGTAAT AACTGTAGCGAAGTTTTGTGAAAACCCCGAACATAATAGAGAGGGGGCTTTGTTAGGATC AAGGAAGTTCTCTGTTTCTTTCATACCCCCACTTCTAGTTTTGGGGAAAAGTTGATTGCC ATATACCGGGTTCCTTTAATCTCTACCCTATCGTCCCCAATTGGGGTTCACCATATTGTT AAATATCACTTTCCTTTCTACTTTTCCCTCACTTGGGCTCTCGGGGATTGTTTTGAAATC AGGTTGAACATATTTTTGTGTATGACCCATCCAAACATTTGCGGGGATAAGGCCGCCAAT ATTTCCTGTATCATTTTCAGTAACACCCCCGCTGAATCCATAGGGGAAAGTACTCATATA ATCTTTTGTATCAATTTAATTTCTTCCCTAGCAATCAGATATGGGGGCTACTTCATTATC AGGTAGTTGCAACTTTTCCTTAAAGCCCGAACGCCAGGCTAAGGGGCTTTTGTTAGCACC ATCTTCGCTATAAATTTTATATTGACCCGCACTGGTACCTTTGGGGCTAATAACTAGCAG ATTTTTATTGTGATTTTTATCATCGCCCAAACTATAAAATACGGGGTTGTGCATGCCATT ATCTTTATCATAAGTTTCTAAATCACCCGTTCTTACTGTAGTGGGGCTTCCAATATCTGT AGTACCGGTTTTAATTTTAATATCACCCTCTCCGGCATTAGCGGGGGGATTCATTAATAT AGAACCTAGCAATATTTTTGTTGTTCCCGAGCTGACTATACGGGGGTTCATTTTCATCAT ACTTCTATTTTTTTTTTCGATTTGACCCAACCATAATCAATAGGGGAATTTAGAATATTG AAGTTGAGACATATTTTATATTTATCCCCGTCTATATTAGTAGGGGTAATGTAGCAACTG ATAAATTACTGAGTTTTGATGAGTGCCCATTCTAAGAATATGGGGGTAACTTTTATTTAA AATTTGAAAGGAAGTTTTTCAATTTCCCGGGCTAGTCAAAGTGGGGTAAATTCTTTATGA AACAAGGAAAAGACTTTGCTAATTTCCCTGACTAATTTCTTTGGGGCTAATGATTTGTTT AATTTAAAAATGTATTTGATTACAACCCAAACATACAAATATGGGGGAATTAAATCAATT AATTAACTATTAAATTTAAATTAAACCCATACTAACTACTGTGGGGTAATAAATAGAAAT AGAGAAAAAGGGTATTTATTATGTTCCCAATCTCGTCGGGAAGGGGTTTTGCCATTACAT AGAAATATCTAATATTTAATGAAAACCCATCCTATGTATTTTGGGGATAGTGTAAAATAT AATATGTAAAATAATTTGTAGATTTCCCGTTCGAGGCATTATGGGGAAATTTTGAGTATA AGTTAGCTTTTAATTTTGAATCTTACCCAAACTTGATTAATAGGGGTATGATAGGGGATT AAAATGAAACTATTTTTTATCGTATCCCTTACTATTATATGGGGGGATATATTTTTAGGA AATGAAATTATCCATTTACTGACTGCCCTAACAACAACATTGGGGGTTGTTAATTCAAGA AAGGGGATTAAAAATTTCAGAGTTGCCCAATCTTATAAACTCGGGGCAATCTTTGTTTGA ATCTGAATCAGGCTTTTAAATTTCGCCCAATCCAGGAGTTCCGGGGCAAACAGTACAAGA ATTAAGAAATGGGATTTCCAAACTACCCGATCCTAGATTTAGGGGGATTATTAAACTTTA AAGTTACTATGTCTTTTTAAAAGAACCCTAACCATGGGACAAGGGGGTATTGCTATAATA ATTGAATCATTAAATTTAGGAATAGCCCCTACGACATAATAAGGGGATGTCTTAGGCTCT ACAATATTATATTGTTTGTAGTTGACCCAATCAAAATGACCAGGGGACAAGCATTTTTGG AGCCCCAACACAGATTTTGACGAAACCCCAGCTTACAATAATGGGGAAGTTGGGGATGGG ACCCAACACAGAGATTTTCAAAAAGCCCTTCCACAGACAATGGGGGTTGGCGGGGCCCCA ACATAGAGAAATTCTTTAAGAAATTCCCCAGCCAATGCAAGTGGGGGAGTGACAACGAAA AAAATTTTATAAAATTTCATTTCTGCCCCATCCCTACTCCCAGGGGCATTTAAATATATA AAAAATTTCACCTATTTTATACATCCCCCACCTTAAAAATTAGGGGTTAAATAATCTGAT ATGGAATTAAAGTGTTTGAAGTATACCCCACCTTCATATACTGGGGAAAGAGGACGTCAA AAGTTATTTTATTATTTTTTTTAACCCCAACCTTTGCTAGATGGGGATGTAATCTTTTGC ATAAATCAATAGTGTTTTTATTACCCCCACCCGTGATCTTAAGGGGACCTTTATTACGAT ATTCGGTATATAATTTTTTATTTTTCCCTAACGCTTCTCGTGGGGGGAAATCGATTTCTT ACAATGTTAATACTTTTTTATTGCCCCCGTACATTTTATGCGGGGGAATAATCGTTTGTA ATTTATCTTTGTATTTTACAAAAAGCCCATACGTTTTATCAGGGGGTTTTGCGGCTGGTG AAACGCCACCTGTATTTGTCTCTCTCCCAGACCACCATAACTGGGGAGTATCTTTGTCTT ATAGTCCAAACACATTTACGTAACGCCCTTTCAACTGATTAAGGGGTCCCCAACTTTCAG AGCCCCATAAAGATTTTTGTGCTGACCCTGACTATCTCTTAAGGGGAACATAAATGTTTC AATTATCATATTGATTTAGCCATTTCCCTGACAATGAAAAATGGGGCTGTGTGTAATATT AAATTAATTCATTGTTTTTAGTTTCCCCTTGCCCAATGCTATGGGGTTTAGCTTCAGAGT AAAAACTAAATACTTTTTTTTGATTCCCAGGCAATACAGTACGGGGTAGTAATAATGTTG ACGTTAAAATTATATTTTTCGTGATCCCCTTCCTCATTAGAAGGGGTCCTTTCAGAGGAA ACATGATACGAGGATTTAGAAATTTCCCTGTCAGCGAAGTCAGGGGAGTATTTGCGATTA ATTTTATTAACTCCTTTATTATTGTCCCTTTCATTTTTCGAGGGGGACTTCAATTTTTGC ATTTTGAGGTTTTTTTTCATATCTACCCGCACCAGTTGATGGGGGGCTTTTACTTAAATC AATTGTGTAGTTATTTTCTGTACCTCCCATTCTAATTTGTCCGGGGTTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATCCCTGACGAATACGAAAGGGGAATTCTTTTAAAGT AAAAACAGGCTTATTTTCTTCATAACCCGGACATCCGCCAGTGGGGGTTTCTGCTTTATC ATTATATGTTACATTTTGTTTATAGCCCTTACCGTTAGATGTGGGGGCAGGAGTAACACC ACCAGTAAACGTTTTTTGAGATAATCCCAAACAATCAATGGTGGGGTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTCCCTGGCTGATATTGCCGGGGCTTTCAGGTCCATA AACTTGAATATGACTTTACCAAGAACCCTGTCACAACGTTGCGGGGATCGTACCGTTATC ATTTTGCCATAACGTTTTGTTAGAGCCCGTTCAATATTTTTGGGGGTAATATTTAGTTAA ATCATTAACGTTAGTTTCGTTTTGACCCATACAATAAGCTTTGGGGTCAGATGAAGAATT AATAGGTGTATTAGTTTATTGTGTACCCGCTCTACCTAATAGGGGGAATGTTGTTGATAA AATAATTTTTTTCGTTTTGTTATTGCCCATTCGAATTTCTCCGGGGAGTATTGTTGGAAT ATTTAATTATAAAATTTGGTTAATTCCCTAACTGAAATTATCGGGGTTTACAAAAGGTAA AAGGTTAGTTAGATTTTTCGAGTATCCCTTCCATTTGTGCATGGGGAGGATTTTTAACAT AACGGTTTGTGTCATTTAATTTTAACCCTTTCCTTAAATCAAGGGGGTAATTATTTCCAT AAGCAGTTATCTTATTTTGACCTTTCCCAAACTCTCCGTTATGGGGCTTTTTATTCTTTA ATAATGTTTGACGATTTCGGAAATCCCCTTCCTTTAAAGTTAGGGGTGGTTTATTTCCTT AGTAAAATTCATGTTTTCCGATGATCCCTTGCTGTTTATCACGGGGTTTTAAAAATAGTC AATAAGGTTTATCATTTGAAGTAGCCCCTGGCGTAACACCACGGGGAAATGTTTCATCAT AAGTCCAGTAACCTTTTACTGTGTCCCCATCCTTAGTTCCAAGGGGATCAACGTATTTAT ATCTTAACTGATTATTTTTTCCCCACCCCTCCGATCCAAACAGGGGAATATGACTATACC AAACCCACGTTTGCTTTGTTGCATGCCCGCTCCCATTGGGCTGGGGCCATAGCCATTTTC AAGATAATGAAAAATTTGGCTGAGTCCCATACTTGATTAACTGGGGGATATTAGTCTCGT ATTCACTGATATTATTTGCTTTTGCCCCAGACGAAAAACTGAGGGGTGTTTTAGGAAGTT ATGTTGATGTGGTTTTTAAAAGTAACCCTGCCGTTGATAAAAGGGGTTTATTCATGATGT ACTTTTTCATATGATTTTCTCCTTTCCCTGACTTACCCAAAGGGGGTAAGCTATTACACC AATTCGGAATTAAATTTAAGCTAAACCCATGCTAAATAAACTGGGGCAGTTAGTAGTGTT ATTTAAGCAAAACTTTTCATTTTTACCCTTTCGACAGAAACAGGGGTTAATAAAGTAGGC AGGAGTTATATATTTTTAACGACACCCCACACTTATTCTCTAGGGGATTGCATTAAATTG ATTGATAATTGAATTTTCTAACTACCCCAAACATAGTTATACGGGGAATGTAGTACTTAT ATTAATTATTTCCTTTTACTTAAATCCCATACTAATAAAATGGGGGTTTAATTATTGATA AAATATTACAAATTTTTATAGTAGGCCCTGTCTATTTTGTATGGGGTTACAATTTAGGTG AAACTAAAATAAAATTTGTTGTTATCCCTGACAAATTTACGAGGGGGAAGTTTTTTAACT ATATTAGACTTTTCTTTACAAGAGGCCCAATCCTTATTAACAGGGGCCGAGGATTTAAAA AGTGCTAAATATATTTTCACTGAAACCCCTACGTTAAAAAATGGGGATATTGCACTGTTA ATTGAAAAAGATTCTTTAAGAACGCCCCGTGCATTTGAAGTTGGGGCGCATGATCAAGGT ACAAATGTAACTTATTTAGGCCCAACCCGATCACAAATGGGTGGGGAAGAAACAACTAAA AATACTGCACGTGTTTTTGGTGGAACCCATGCTGGCATTGAAGGGGGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAACCCCAGCCGTACCAGTGGGGGATGGTTTAACTGAT AAAGATCATCCTACTTTAGTTCTTGCCCATTCCTTAACAGCAGGGGAAGTCTTAAAAAAA AATTATGCAGATATTTTCTTTACATCCCTTGCAGATGGTCGTGGGGACGTTGCAAATGCA ATAATGCAAGGTGCTTTCATTATGGCCCTGACCTTCCATTTAGGGGGTCCAAAAGAATTA AATCCAACAGATGATTTATTAAATCCCCGTACAAATATTGCCGGGGAAAATGGTGGCAAC ATATTAATCACAGATTTTATTGACCCCCGTGCAAAAGGTTCGGGGGTAATTTACACTGAT ATTTGGGTATCAATTTTTGAACCTGCCCAAGCATGGAAAGAAGGGGTTGAATTATTGAAA ACATATCAAGTAAATTTAGAAATGACCCATACAACTGGTAATGGGGATGTTATTTTTGAG AATTGCTTACCATCTTTCCATAATGCCCATACGAAAATTGGTGGGGAAATTTTTGAAAAA AATGGTATTCGAGATTTGGAAGTTACCCATGCAGTATTCGAAGGGGAAGCTTCAGTTGTA ATCCAAGAAGCTGATTTCAGAATGCCCCCAACCAAAGCAGTCGGGGTTGCTACATTGGGT AAATTTTAAATGATTTTAGGAAGTGCCCATGCTGGCGAAAATGGGGGTAGCATTAGGTGG AAATGCTTTAGGAATTTCACCTCAACCCCAACTCGAGCTTGTGGGGAATACTGCGAAATC ATTAGTAGGATTAATTTCAAAAGGACCCGAGCTTGTTATTAGGGGGGGTAATGGACCACA AGTTGGAAGCATTATTTTGGGACTTCCCTATCCTGCAGAACAGGGGCAAGGTCCGGCATT ACCATTTGCTGAATTTTGCGCAATGCCCCAACCTTACATCGGGGGGCAATTACAAGAAAG ATTACAAAATGAATTTTATTCTATTCCCATGCATAAACAAGTGGGGACACTAGTGACACA AGTTGAAGTTGATGTTTATGATCCGCCCTTTCACAATCCTTCGGGGCCAATTGGGTTATT ATACAACAAAGAAGTTTCTGAACAACCCCAACAAGAAAAAGGGGGGATATTTGTTGAAGA AGCTGGAAGAGGATTTTGACGCGTTCCCCCTCCACCACAACCGGGGTCTATTATTGAATT AGAGAGTATTAAAATTTTTATTAAACCCGATCCACTCGTTATGGGGGCTGGTGGTGGAGG AATACCAGTAATTATTTAGCAACATCCCGGTCTTAAAGGTATGGGGGCAGTTATAGACAA AGATAAAACAAGTGTTTTGTTGGGTCCCAATCTTCAATGCGAGGGGTTGATTATTTTAAC AGCAATTGATTATGTTTATATTAATCCCAACCCTGAAAACCAGGGGCCTTTGAAAACAAC AAATGTTGATGAATTTTAACGATATCCCGACCAAAATCAATTGGGGAAAGGAAGTATGTT ACCAAAAATTGAAGTTTCCATATCACCCATTCAAAACAATCCGGGGGGAAGTGTGCTTAT AACATCATTAAATGTTTTAGATGCTCCCTTACAGGGTAAAGTGGGGACTGTGATTAAAAA ATAATTGAATTGAATTTCTTTTCAACCCCTACATGTCAAATGGGGGATTTTTATTATTTA AGTGCACCCCCTGATTTTAATGCCTCCCTTTCGATGCGGGGTGGGGTTTCTTAATTTATA ATTATAAAATCTTTTTTGTAGAAATCCCAGGCTAAATGTCGAGGGGGATGAAACCGTGGA AAATACAATTAATGTTTGTGAAAAGCCCAAACGATTTAAATTGGGGATGCCAGGTGCATT AATGATTTTATTCATTTTAACGGTTCCCGCACTTATAGCAACGGGGGTTATTCCTGCTGG AGCATATTCTAAACTTTCTTACGAACCCTCACCCCAAGAACTGGGGATAGTTAACCCTCA AAACCAAGTGAAAATTTTTCCGGGTCCCCAACAGGAACTAGAGGGGATGGGGGTTAAAAT AAAGATTGAACAATTTTAATCAGGTCCCATTCATAAGCCAGTGGGGATTCCGAATACTTA AGAAAGATTAAAGCTTTATCCAGCTCCCCCACAACAAATAACGGGGAGCATGGTTGAAGG AACGATAGAAGCGGTTTATATCATGCCCTTCCTTCTTGTACTGGGGGGACTTATTGGCGT AGTTCAAGCCAGTGTTTCTTTTGAACCCGGACTGTTAGCTTTGGGGAAGAAAACAAAAGG ACATGAATTTATGCTTTTTGTGTTTCCCTCACTACTAATGATGGGGGGCGGGACGTTATG AGGTATTGAAGAAGTTTCTGTAGCACCCTATCCGATTTTAGTGGGGATATTTATAGCGTT AGGATACGATTCTATTTTTTCAGTTCCCGCCCTATTCCTTGCGGGGTCTGTCGGTAGTAC ATTTTCAACTATTATTTCGTTCTCGCCCGTACTTGCCTCTAAGGGGGCTGGTACAACTTT AACGGATGGCTTGTTTTGGAGAATACCCGCTCGTATTGTCGGGGGGATTTTTGTTATTAG ATATTTATATTGGTTTTGTAAAAAACCCAAACACGATCCTAAGGGGTCATATTCTTATGA AGACAAAGATGCTTTTTAACAGCAACCCTCTCTATTAAAAGAGGGGGATAGTGCCCATTT AACTTTGCGTAAGATTTTAATCCTTCCCTTACTTGTACTACCGGGGCCAATTATGGTATG AGGAGTTATGACGCTTTGTTGGTGGCCCCCACTTATGGCTTCGGGGTTTTTAATATTTAC AATTATAATAATGTTTTTTGCTGGGCCCGGTCAATCTGGATTGGGGGAAAAAGGAACTGT AGATGCATTTGTCATTTGTGCATCACCCTTACTAGGTGTATCGGGGATTATTGGTTTAGC ACGAGGTATTAATTTTTTGTTGAATCCCGGTCTGATTTCAGAGGGGATCTTACACTTTTC ATCATCTTTAGTTCTTTATATGAGTCCCCCACTATTTATCATGGGGTTACTATTTATTTT ATTCTGTTTAGGTTTTTTCGTGCCACCCTCTCCTGGATTAGCGGGGTTATCAATGCCTAT ATTTGCACCACTAGTTTATACAGTACCCATACCAAGATTCGTGGGGGTTACGACATATCA ATTTGGTCAATATGTTTTGTTATTCCCCGCGCCGACTGGACTGGGGATGGCCACACTACA AATGTTAAACATGCTTTATTCACATCCCTTCCGATTTGTATGGGGGGTAGTTGCTTTTGT ATTGATTTTCGGTGTTTGAGTACTACCCACGCAAGTACTAATGGGGTCATAATTTGAAAT ACTATATTATAAAATTTCTAATTGGCCCTTACGCATCTCGTAGGGGTGTAGAAATACTAA ACTAAGCGAGGTGCTTTATTATTTTCCCTTACGAAAATAATGGGGGTAATGATAACACTA ATAAGTAATTGATATTTTGCTCTATCCCATACTGATATTTTTGGGGTTTGTTTTTAATGT AATGTTAGATCTATTTTATATTATACCCATCCTGGTAAATATGGGGTTGCTGTAAACAGT ATTTGTAACACATGTTTCATATGGTCCCGAACATAGCATATAGGGGGGATGGCTATAAAT AACACATTTGACAATTTTTTTAGATCCCCTACCTGGAATATGGGGGGTATTATTATTTAG AAAATATTTTGTGGTTTATGCAAATCCCGTGCTTGATTGGAAGGGGAGATGGTATTTGCT AGAAAACATACCACTTTTGCCAATTCCCTTACTTATTCTGATGGGGATTTTCGGAGTACC ATCTGAAATGATAATTTATAGGCAACCCAAACATAACGGTGTGGGGTTTATCGATATTTA AAGGTGATAAAATTTTTCAACTATTCCCAAGCCTAAAATAAAGGGGTTTATTAATTATTT AATTGGTATATTAGTTTTGGCGTTTCCCGCTCATATATTATTGGGGTAAAGGTTAGAGTG AAACGTGTTTATGATTTAGACGTTCCCCTATCGTTACTACAGGGGGAGTCAGAAGGTATC ATTGATAAGATCATTTTAAATCAAACCCGCACTGATATACACGGGGAAGAGGCAAGATTA ACTGCCTCTTTTTTTTTTATTAAATCCCCGTCTTAATTCTTGGGGGTAGTGTTACTGAGA AGCATTACGAAGAATTTTATCTTGACCCTCCCTTTTTAAAAAGGGGTGAAGATATCCTAT AAAGACTCTAAGTATTTTTACAGTGCCCAATCACACTTCGATGGGGAAAAGACCTTTCCA AATATCTGGAAACATTTGTACAGGCCCCCTGCTCTTTAAAGCGGGGGCTGAGATTACTAA AGGGAATGTGAAAGTTTAAAATACGCCCGAACAAGGTTCTTTGGGGAATTTAGGCAATTG AATAATGATATAAATTTAAAATATTCCCGCTCATATTAAAAAGGGGATTACGATAAAAGC ATTCGCCTTAGGAATTTCTATAACACCCGCTCCAGCGACTAAGGGGAATGGTGCACAAAT AGTCGATGTGTTCGTTTTGATTGACCCCTGCCATGGAAATGCGGGGAATCGCTTGAAAAC AATAGGTAAGACAATTTAAGTAGCTCCCAAGCCATATATTACGGGGAATTGACCTATGAA AAAACATCCGCTAATTTGTGCCGTCCCCCCTCCGATAGCAATGGGGATAAAAAGTACAGT ACACGAAGGATAAATTTTTTCAAGTCCCAAACCTTTTAAATAGGGGATTGAAAAAATAAT AATATGCGTCATAATTTCCACAAGGCCCAAACTCCAAATAGGGGGGATTAAGCTATTGAT AAAAGTTATGTTACTTTAAAATGTACCCAAACAAGTAGTACCGGGGAAGCCAGACATGAA AAATGTTGTGAACATTTATGAAACTCCCGGACTGTTTAATTGGGGGTTCACATTATTAAA ATATTTGATCATAGTTTATAAAAGGCCCATCCAAATCAAGAAGGGGAAGATTCCGCAAAC AGCGTTTAAAGTAATTTATAAGTCTCCCAATCGATTACCCAGGGGGAATAATCCTAAGAC AAGTCCTGACGTTATTTGAGGTGCTCCCTGACGTCTCATGATGGGGAACCTTTCTTATGT AATTTTCTTCACTATTTATATCATGCCCGCTCTGGCCAATTAGGGGGAAGAGTGTGTACT ATTACGTTATTAGATTTTGTATATTCCCTTGCTAGACACATAGGGGACATTTAAATCTCA AAATTAATGATATTTTTGGTATGCTCCCCAACCTAAATATTGGGGGATGTGGAAAAGTAA ATATTTAATTTAAATTTTGATTGAACCCTTACAAGGGGGTGTGGGGAATGAGAAATCAAA ATCAAAAACTATTATTTAGTGATTTCCCCAGCTTACATATATGGGGACAAACAGGAGTTC AACAAAGCACAATATTTAGAATGAGCCCAAACGAAAGATCATGGGGCAATATGTCATTGA AAAACGCTGAACTATTTTATAAATTCCCCAACAGTATATTTAGGGGTGAAAATTAAGAAG AATAATTAGTGAGTTTTATAATTAACCCACCCCGTCTCGATGGGGGTGGTTATTTTTTTA AATGTATTTAATTATTTGATTTCGGCCCCCTCAAAAGTCCCTGGGGTTTTGAATAGTATC AAAATCTATAGGAATTTTATAATAACCCAAACCTCTACGCATGGGGATGGTGAGTGTTAA AAATCTTGGTGTAGTTTTGGTGTAGCCCAGGCGCAGTATAGAGGGGATTTGAGCACAAAA ATACTTAATTAAAATTTTATAAACACCCGTCCGACGCGTGTCGGGGGTGTGTCAAAAAAT ACTATGACGAATAATTTTGCTTGTTCCCATTCCTGTATTTTCGGGGCTTATGCGGGGGAC ATTTTGGTGACGCATTTTACTATATCCCTGACATTCAAAACAGGGGGAGCCCCGTAATCA AGGAACTCTTTTGTTTTGTAATGCGCCCAAACATACCTATAAGGGGCCTGGGAGGGATTC AAACCCCCGACCGATTTCTTAGAAGCCCATTCCTCTATCCAGGGGGGCTACCAGGACACG ATTAACAACACAAGTTTTATTATATCCCAATCAACTTAAATTGGGGATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTCCCGAGCTATTTATCTAGGGGGGTTCAATAAGACT AAAATGCGAATTCATTTAACTTAATCCCGTTCAATACAGTTTGGGGTGCCTAACTGTATT ACTTTTCTCTTTAATTTACAGTTAACCCCATCATAAGATGTTGGGGGGATAAACAAACTA ATTGCATCAAATTTTTTTTAAAATACCCACACCAAAACGTTAGGGGAATAACATTTCGGT AATTTAAAAGCTACTTTCGTTTTTGCCCTCTCCAAATTTAAAGGGGAAGGAGTGTTTTCA ATGGAAGGTTTATTTTTCGCAATTACCCATACCGTAACTGCAGGGGTTAATAATGATGGC ACAAAATTAGGCACTTTCATTGTGACCCTCGCTGAAAATGGCGGGGGTTTATTAGGTAAA ATATTCGGATTCTATTTTCAATATGCCCTGTCAGTAATCAGTGGGGTTTCAAAGGTGAGG AAGAGATTTAAATGTTTGGACTAGCCCCAGCCATCGCAAATAGGGGGCAAGCTGCACAAC AACATGATAGTGTGTTTTTAGGCACCCCTATCGTAGACATCGGGGGTAACGGTGTGGGTT AACTAGGTAAATTATTTGGATTCTACCCTAACAACTAATATTGGGGAAAATAAACTGGGT AAGCATACTTTAATTTTATGCACTCCCCTTACTTTATTTGCAGGGGTTTGAGCCTCTGTT AAGATTTAGATACATTTACAATATACCCGATCGGGAAATTGGGGGGTAAAAATATTTTGA AAGACTTTGATGATTTTATTGTTGACCCTTACGATGCAGAAGGGGGGGCGTTTCACTATA AGGCGAATGTTTTTTTTCATAAAGCCCCAAACGATGATTTTTGGGGATTTAAAAAAATCA ATCACCAACATTGGTTTGCTTTTCACCCAAACAAATTAACGAGGGGTGAAGTATTATCAG AACGATTTGTGAATTTTTTCAAACACCCTCACATGGAAGTTGGGGGGCATCGTGCAGATG AGTTATTTAGAAATTTTTTAGCAGACCCTAACGTTAAATACTGGGGTCAAACATTAGAAA AAATTGTCGAATTATTTAAAAGACACCCTTTCTATATTGTTAGGGGTGGTGTAACCGAAA AGCAAAAGAGAAGGTTTAATCAGACCCCGTTCCATAAATATAGGGGAAAGATATTTATAT ATGAGGAAACAGGATTTCAAAAACCCCCTCCCGAATTTTTTAGGGGTGTTTTTAATGATA ATGGTGAGGATGAATTTCAGCACTCCCCTATCGTTGGAGATTGGGGAACATCTGACATTC AAGGTGGAATCAATTTTGGTATAGCCCCTTGCTGGTTTAATTGGGGAGGATTTGATCATA ATCCAGGAATTATATTTGATTATGACCCTAACTCATGGAAACGGGGAAATGATATTGTAC ATTAAGACAAATAATTTGAAAATGACCCATACTAGCTTAAGAGGGGAATTGTAAAAACGA AACTACGAAAAGATTTTTTTTCATGCCCGTACTGTCGAATATGGGGATCTTATGGTTTCC ACAATAAGACATCATTTCCCTCTATCCCTTTCGCTTCCACATGGGGAAATCCATGATGTA AAAAGAAATCCTTATTTTCATTTCTCCCAATCGCTTTAATTGGGGGATTGAAACTCTTTG AAAAATCAATCAATTTTGAAGCGTACCCTCTCTTTTGATATTGGGGTAATACTTCTAACT ACCATAATAATATATTTTCTTCAAACCCTGGCAAGTAGATTTGGGGGACATCACCTTTTT ATAGTAATGCCATTTTTGCTCCTAACCCATCCCCGACAAATAGGGGATAAAATGGTGAAT ATGAACTTGCATCATTTATTTGACCCCCTAACTCATTGACCAGGGGTAAGTCTTTGTTGC AAAACGCTCTAAAGTTTTCGAATAACCCGTCCGTTTTGTAATGGGGTTCAAGACGTTTGA ATTCACTCATATTTTTTTACCCCTTCCCTGTCTACTACTATTGGGGTACATTAAACCACT AGTGTTTTTCATTGTTTTGAAAATGCCCAACCATGAACATTAGGGGTTTTCCATGATTAA ATTGATTTTCAAGCTTTAAAATTGTCCCTCACCGGTATAGACGGGGTACTATAGTTTGTA ATCGCGTACTTAAGTTTAAAAAACACCCACTCTAAAGTAGTTGGGGTAAATGAAAAAGAT AAGTTTATACCAAATTTAAAGAGCACCCACCCTGTAATAACAGGGGTATTTCAATATGAT ACAGCTCAACAAACTTTTTTTGAAACCCGGACGTCTAAAGAAGGGGATGGAAGAGAAGCG ACATTAGCGAATGTTTTTCGTGAATCCCTGACTGATTTAAAGGGGGCAAATGAACAAGAA ATAAACATACAACATTTAGCTAATGCCCCAACAGTTGTGATTGGGGGACAACAAGCAGGG ATTTTCGGGGGACCTTTGTATACATCCCATACAATATTTTCAGGGGTTACTTTATCTAAG AAATTAACGGATACTTTTAAGCAACCCCTAGCACCAGTTTTTGGGGTTGCAGGAGAAGAT AATGATTTCGATGATTTGAATCATACCCTTGCTTATAACGAAGGGGATGGGTCGCTGCAT AAGGTTAAATATCATTTAATGGAGACCCCAGCGACGACAGTCGGGGGATATTATCCTGAT AAGGCTGAGTTGAATTTAACTTTAACCCCGACGTTCATTCATGGGGAAGAAACTGTTCAT ACACAAGGTCTACTTTTGATTTGTGCCCGAACTATTGACCAAGGGGACTCGTGGACTGAT ATGTTTAAAGCACTTTTGCATGAAACCCTTACAGCATATGGCGGGGTATTTATAGATGCG AAGTTTGAGCCGTTTTTAAAAATGGCCCCGCCTATGTTTAAAGGGGTTTTGAAAAAACAT AAGTTGCTTGATGATTTTTTTAGAGCCCCACCACAACGTACTGGGGATCAAGGCTTGAAT ACGATGATACAAACTTTTACAAATGCCCATTCATTCTTACATGGGGAAAATATGCGCCAA ATAGTTTCGTATGATTTTAAGCATTCCCAATCAAATAAAACAGGGGAGACATATATAAAGRoary-3.8.0/t/data/query_groups000066400000000000000000000001561304207556500164720ustar00rootroot00000000000000group_1: 1_1 2_1 3_1 group_2: 1_2 2_2 group_3: 1_3 3_3 group_4: 2_4 3_4 group_5: 3_5 group_6: 1_6 group_7: 2_7Roary-3.8.0/t/data/query_groups_all_merged000066400000000000000000000000701304207556500206400ustar00rootroot00000000000000group_1: 1_1 2_1 3_1 1_2 2_2 1_3 3_3 2_4 3_4 3_5 1_6 2_7Roary-3.8.0/t/data/query_groups_missing_genes000066400000000000000000000001621304207556500214010ustar00rootroot00000000000000group_1: 1_1 2_1 3_1 4_1 group_2: 1_2 2_2 group_3: 1_3 3_3 group_4: 2_4 3_4 group_5: 3_5 group_6: 1_6 group_7: 2_7Roary-3.8.0/t/data/query_groups_paralogs000066400000000000000000000001471304207556500203620ustar00rootroot00000000000000group_1: 1_1 2_1 3_1 group_2: 1_2 2_2 2_7 group_3: 1_3 3_3 2_4 group_4: 3_4 group_5: 3_5 group_6: 1_6 Roary-3.8.0/t/data/query_groups_reference000066400000000000000000000001361304207556500205060ustar00rootroot00000000000000group_1: 1_1 2_1 3_1 group_2: 1_2 2_2 group_3: 1_3 3_3 group_5: 3_5 group_6: 1_6 group_7: 2_7 Roary-3.8.0/t/data/raxml.tre000066400000000000000000000176401304207556500156500ustar00rootroot00000000000000((efgh_7#3:0.02316815548247504186,(((((abcd_4#15:0.00000132226186997362,((abcd_3#9:0.00077142536151366802,abcd_4#17:0.00231509323793084891)66:0.00000132226186997362,abcd_3#20:0.00000132226186997362)69:0.00000132226186997362)100:0.00465923394294907780,abcd_3#96:0.00855943508912884905)97:0.00305706239572176106,abcd_3#7:0.00702776231555758951)100:0.01189241259037208259,((6753_5#30:0.00077274606169234225,((abcd_3#8:0.00232303086183083740,abcd_3#12:0.00000132226186997362)15:0.00000132226186997362,abcd_4#13:0.00077458209519013735)34:0.00000132226186997362)100:0.00543005878845978333,abcd_3#4:0.00627124124511847011)100:0.02250612800623742402)94:0.00229388045702955557,(abcd_3#47:0.01341623695325115141,((abcd_4#36:0.00000132226186997362,abcd_3#90:0.00000132226186997362)100:0.01406707131121531958,(((abcd_3#45:0.00000132226186997362,abcd_3#51:0.00645148529478506948)88:0.00213347922463543761,((abcd_3#76:0.00623728515995487526,(abcd_4#22:0.00627252597618067984,((abcd_3#94:0.00000132226186997362,abcd_3#72:0.00000132226186997362)98:0.00310391698506840095,abcd_3#18:0.00000132226186997362)100:0.00866004226368127794)83:0.00074194767764187573)62:0.00078073745490957029,((abcd_3#82:0.00622652688081153961,(abcd_3#88:0.00000132226186997362,abcd_3#87:0.00000132226186997362)100:0.00857673644197349747)57:0.00072923797818549103,(abcd_3#58:0.00000132226186997362,(abcd_3#85:0.00000132226186997362,(abcd_4#24:0.00076942622569081123,abcd_3#86:0.00154436764242521811)67:0.00000132226186997362)95:0.00153994529775838417)100:0.00622988517781090934)99:0.00391098343731804791)56:0.00000132226186997362)84:0.00155245684874360406,(abcd_4#38:0.00000132226186997362,(((abcd_3#70:0.00000132226186997362,abcd_3#89:0.00077092094232594885)67:0.00077141909097768792,abcd_3#19:0.00000132226186997362)64:0.00077185290304121294,abcd_3#84:0.00077268682225444766)46:0.00000132226186997362)100:0.01884135086335945314)84:0.00000132226186997362)98:0.00231665969313109722)100:0.00869061762598819128)100:0.00712310831326986617)100:0.00000132226186997362,(((((((((abcd_3#60:0.00000132226186997362,(abcd_4#21:0.00000132226186997362,abcd_3#35:0.00000132226186997362)63:0.00077435429455191866)100:0.00067951772289146634,abcd_3#32:0.00631217588430617402)100:0.02994628172895110949,(abcd_4#20:0.00156522339577581807,(abcd_3#11:0.00000132226186997362,(abcd_4#28:0.00000132226186997362,abcd_4#27:0.00000132226186997362)99:0.00233669665377406015)91:0.00077239513539845042)100:0.01606095283607060151)100:0.00462461859626085801,(((abcd_3#54:0.01180235074075351893,abcd_3#53:0.00857612881135592746)67:0.00089112701883803304,abcd_3#43:0.00393186422217672599)100:0.00538409429284307343,(abcd_3#50:0.00622392842077187317,((abcd_4#12:0.00076758051025639250,(abcd_3#15:0.00000132226186997362,abcd_3#21:0.00385987594678770642)83:0.00000132226186997362)100:0.01960407345618833327,((abcd_3#91:0.00000132226186997362,abcd_3#73:0.00000132226186997362)100:0.00620531368446218968,(((abcd_3#61:0.00388805278349425333,(abcd_4#35:0.00778153754178156389,abcd_3#17:0.01089247524165314410)65:0.00000132226186997362)64:0.00077356760974459440,(abcd_3#67:0.00312895358465437121,(abcd_3#27:0.00000132226186997362,(abcd_3#13:0.00077547546351081618,((((abcd_3#24:0.00000132226186997362,abcd_3#95:0.00000132226186997362)50:0.00000132226186997362,(abcd_3#23:0.00000132226186997362,(abcd_3#29:0.00000132226186997362,(abcd_3#75:0.00000132226186997362,abcd_3#25:0.00000132226186997362)8:0.00000132226186997362)4:0.00000132226186997362)3:0.00000132226186997362)14:0.00000132226186997362,abcd_4#16:0.00077326015058246165)18:0.00000132226186997362,(abcd_4#30:0.00000132226186997362,(abcd_4#26:0.00000132226186997362,(abcd_3#36:0.00000132226186997362,abcd_4#25:0.00000132226186997362)32:0.00000132226186997362)29:0.00000132226186997362)83:0.00154603891415671085)42:0.00000132226186997362)65:0.00077376150782699756)100:0.00702342907247293334)64:0.00075456473366204040)12:0.00000132226186997362,((abcd_3#64:0.00000132226186997362,abcd_3#44:0.00000132226186997362)65:0.00077365659659393512,(abcd_3#68:0.00000132226186997362,abcd_3#69:0.00000132226186997362)100:0.00932174039768971646)15:0.00000132226186997362)23:0.00000132226186997362)56:0.00077344029318351904)61:0.00000132226186997362)100:0.00465345295130407000)100:0.01111214870825547735)99:0.00374408351410862681,(efgh_7#12:0.01833223611065578143,(abcd_3#55:0.02324957283752214152,((abcd_4#1:0.00469566203917269956,(abcd_3#56:0.00546936779545076270,abcd_3#14:0.00622833716792515427)100:0.00151084301588890889)100:0.00789157197361813056,(abcd_4#7:0.00233293316007452626,(abcd_4#8:0.00077311598970405320,((abcd_3#26:0.00077550158683622301,abcd_4#9:0.00000132226186997362)39:0.00000132226186997362,(abcd_4#40:0.00231679829332564514,abcd_4#10:0.00000132226186997362)89:0.00154601555763803750)40:0.00000132226186997362)100:0.00780916089311263408)97:0.00307287638606677186)100:0.00953794433170505190)100:0.00869196764035643291)100:0.00977872108322918980)80:0.00156873804149701489,(abcd_4#6:0.00000132226186997362,abcd_4#5:0.00000132226186997362)100:0.02610847709952213158)100:0.00115877341875185490,((abcd_3#3:0.01670319394504033925,(abcd_3#33:0.00000132226186997362,abcd_3#28:0.00000132226186997362)100:0.02055825834093799945)100:0.00631193742166692457,((abcd_3#6:0.00000132226186997362,abcd_3#16:0.00000132226186997362)100:0.01660913514998323473,(((abcd_3#79:0.00000132226186997362,abcd_3#77:0.00000132226186997362)100:0.00854956715195766097,((abcd_4#41:0.00154085601563807195,(abcd_4#34:0.00000132226186997362,((abcd_3#5:0.00000132226186997362,(((abcd_3#74:0.00076882224000264889,abcd_3#34:0.00154339011642515137)3:0.00000132226186997362,(abcd_3#2:0.00076882393169920289,abcd_3#22:0.00076882393169920289)2:0.00000132226186997362)0:0.00000132226186997362,(((abcd_4#32:0.00000132226186997362,abcd_3#92:0.00076869510795057395)60:0.00076875756629854659,abcd_4#19:0.00076905889272679622)6:0.00000132226186997362,(abcd_4#23:0.00153888458435903590,(abcd_4#18:0.00230933031152180277,abcd_3#37:0.00154338804217775882)9:0.00000132226186997362)3:0.00000132226186997362)0:0.00000132226186997362)1:0.00000132226186997362)3:0.00000132226186997362,abcd_3#59:0.00000132226186997362)2:0.00000132226186997362)54:0.00076857718755298703)65:0.00077555059848881977,(abcd_3#30:0.00000132226186997362,abcd_3#1:0.00000132226186997362)99:0.00153650731415773379)100:0.00621766977560912586)89:0.00151241128294433351,((abcd_4#42:0.00000132226186997362,abcd_3#10:0.00000132226186997362)91:0.00154222559231584149,((abcd_4#37:0.00000132226186997362,((abcd_3#81:0.00000132226186997362,(abcd_3#80:0.00000132226186997362,abcd_3#83:0.00000132226186997362)62:0.00000132226186997362)70:0.00077071378050518611,(abcd_4#33:0.00154280535353011465,(abcd_4#31:0.00076943370157726051,((abcd_3#71:0.00000132226186997362,abcd_3#78:0.00000132226186997362)49:0.00000132226186997362,((abcd_4#39:0.00076989789528285400,(abcd_3#41:0.00000132226186997362,(abcd_4#29:0.00000132226186997362,abcd_4#14:0.00000132226186997362)81:0.00000132226186997362)78:0.00076966766619406121)82:0.00154202631463747943,abcd_3#31:0.00153982188992232857)52:0.00000132226186997362)46:0.00000132226186997362)87:0.00154081390428061960)46:0.00000132226186997362)15:0.00000132226186997362)20:0.00000132226186997362,abcd_3#93:0.00154841596303632542)70:0.00000132226186997362)95:0.00234308767561589113)100:0.01268000193507385319)70:0.00000132226186997362)100:0.01948160300069467707)100:0.03080643698088052218,abcd_3#62:0.05958621335563133586)100:0.00000132226186997362,(abcd_3#48:0.01495824524344147380,(abcd_3#42:0.00466602633570538643,(abcd_3#52:0.00390697663604849376,(abcd_3#57:0.00701624022983718919,(abcd_3#49:0.00000132226186997362,(abcd_4#3:0.00077677169701956478,(abcd_4#2:0.00000132226186997362,(abcd_3#39:0.00000132226186997362,(abcd_3#38:0.00077936967227037839,abcd_4#11:0.00077652476200712472)44:0.00000132226186997362)98:0.00233380194325215166)82:0.00155750275978298273)87:0.00077833329157559123)100:0.00389755574822029088)100:0.00000132226186997362)100:0.00552477386573709244)100:0.00983188219808936101)100:0.13376681553139949110)100:0.03578419742883675453,5749_2#1:0.02465538922215411086); Roary-3.8.0/t/data/real_data_1.gff000066400000000000000000004345251304207556500166360ustar00rootroot00000000000000##gff-version 3 ##sequence-region ERS111111|SC|contig000020 1 92255 ERS111111|SC|contig000020 Prodigal:2.60 CDS 241 921 . - 0 ID=11111_1#11_04055;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145956.2,protein motif:Pfam:PF07108.5;locus_tag=11111_1#11_04055;product=pathogenicity island-encoded protein A,PipA protein;protein_id=gnl|SC|11111_1#11_04055 ERS111111|SC|contig000020 Prodigal:2.60 CDS 1144 2019 . - 0 ID=11111_1#11_04056;gene=pipB2_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145957.1,similar to AA sequence:UniProtKB:Q8ZMM8,protein motif:CLUSTERS:PRK15197,protein motif:Cdd:COG5351,protein motif:Pfam:PF00805.16;locus_tag=11111_1#11_04056;product=secreted effector protein,Type III effector pipB2,secreted effector protein PipB,Uncharacterized protein conserved in bacteria,Pentapeptide repeats (8 copies);protein_id=gnl|SC|11111_1#11_04056 ERS111111|SC|contig000020 Infernal:1.1 ncRNA 2139 2237 . + 0 ID=11111_1#11_04057;inference=COORDINATES:profile:Infernal:1.1;locus_tag=11111_1#11_04057;product=isrI ERS111111|SC|contig000020 Prodigal:2.60 CDS 2567 2908 . - 0 ID=11111_1#11_04058;gene=sigE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145959.1,similar to AA sequence:UniProtKB:O30917,protein motif:CLUSTERS:PRK15202,protein motif:Pfam:PF07824.6;locus_tag=11111_1#11_04058;product=chaperone protein SigE,Chaperone protein sigE,type III secretion chaperone protein SigE,Type III secretion chaperone domain;protein_id=gnl|SC|11111_1#11_04058 ERS111111|SC|contig000020 Prodigal:2.60 CDS 2925 4610 . - 0 ID=11111_1#11_04059;eC_number=3.1.3.-,3.1.3.-;gene=sopB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145960.1,similar to AA sequence:UniProtKB:O30916,protein motif:CLUSTERS:PRK15378,protein motif:Pfam:PF05925.6;locus_tag=11111_1#11_04059;product=inositol phosphate phosphatase SopB,Inositol phosphate phosphatase sopB,inositol phosphate phosphatase SopB,Enterobacterial virulence protein IpgD;protein_id=gnl|SC|11111_1#11_04059 ERS111111|SC|contig000020 Prodigal:2.60 CDS 5332 6801 . - 0 ID=11111_1#11_04060;eC_number=3.4.-.-;gene=pepD_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002215025.1,similar to AA sequence:UniProtKB:Q8G6Z9,protein motif:Pfam:PF03577.9;locus_tag=11111_1#11_04060;product=peptidase family C69,Dipeptidase,Peptidase family C69;protein_id=gnl|SC|11111_1#11_04060 ERS111111|SC|contig000020 Prodigal:2.60 CDS 6974 8338 . - 0 ID=11111_1#11_04061;eC_number=2.7.13.3;gene=yedV;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145964.1,similar to AA sequence:UniProtKB:P76339,protein motif:CLUSTERS:PRK09835,protein motif:Cdd:COG5278,protein motif:TIGRFAMs:TIGR01386,protein motif:Pfam:PF02518.20;locus_tag=11111_1#11_04061;product=heavy metal sensor kinase subfamily,Probable sensor-like histidine kinase YedV,sensor kinase CusS,Predicted periplasmic ligand-binding sensor domain,heavy metal sensor kinase,Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase;protein_id=gnl|SC|11111_1#11_04061 ERS111111|SC|contig000020 Prodigal:2.60 CDS 8331 9068 . - 0 ID=11111_1#11_04062;gene=copR;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002243090.1,similar to AA sequence:UniProtKB:P76340,protein motif:CLUSTERS:PRK11517,protein motif:Cdd:COG4565,protein motif:TIGRFAMs:TIGR01387,protein motif:Pfam:PF00072.18;locus_tag=11111_1#11_04062;product=transcriptional regulatory protein YedW,Probable transcriptional regulatory protein YedW,transcriptional regulatory protein YedW,Response regulator of citrate/malate metabolism,heavy metal response regulator,Response regulator receiver domain;protein_id=gnl|SC|11111_1#11_04062 ERS111111|SC|contig000020 Prodigal:2.60 CDS 9147 9557 . + 0 ID=11111_1#11_04063;eC_number=3.5.2.17,3.5.2.17;gene=uraH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145966.1,similar to AA sequence:UniProtKB:Q4VYA5,protein motif:CLUSTERS:PRK15036,protein motif:TIGRFAMs:TIGR02962,protein motif:Pfam:PF00576.15;locus_tag=11111_1#11_04063;product=hydroxyisourate hydrolase,5-hydroxyisourate hydrolase precursor,hydroxyisourate hydrolase,hydroxyisourate hydrolase,HIUase/Transthyretin family;protein_id=gnl|SC|11111_1#11_04063 ERS111111|SC|contig000020 Prodigal:2.60 CDS 9890 10402 . - 0 ID=11111_1#11_04064;eC_number=1.5.1.36;gene=hpaC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729827.1,similar to AA sequence:UniProtKB:Q57501,protein motif:CLUSTERS:PRK15486,protein motif:TIGRFAMs:TIGR02296,protein motif:Pfam:PF01613.12;locus_tag=11111_1#11_04064;product=4-hydroxyphenylacetate 3-monooxygenase coupling protein,4-hydroxyphenylacetate 3-monooxygenase reductase component,4-hydroxyphenylacetate 3-monooxygenase reductase subunit,4-hydroxyphenylacetate 3-monooxygenase%2C reductase component,Flavin reductase like domain;protein_id=gnl|SC|11111_1#11_04064 ERS111111|SC|contig000020 Prodigal:2.60 CDS 10420 11652 . - 0 ID=11111_1#11_04065;eC_number=1.14.14.9;gene=hpaB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145968.1,similar to AA sequence:UniProtKB:Q57160,protein motif:TIGRFAMs:TIGR02310,protein motif:Pfam:PF03241.7;locus_tag=11111_1#11_04065;product=4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component,4-hydroxyphenylacetate 3-monooxygenase oxygenase component,4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component,4-hydroxyphenylacetate 3-hydroxylase C terminal;protein_id=gnl|SC|11111_1#11_04065 ERS111111|SC|contig000020 Prodigal:2.60 CDS 11833 12273 . - 0 ID=11111_1#11_04066;gene=hpaR;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145969.1,similar to AA sequence:UniProtKB:O07458,protein motif:TIGRFAMs:TIGR02337,protein motif:Pfam:PF01047.16;locus_tag=11111_1#11_04066;product=homoprotocatechuate degradation operon regulator%2C HpaR,Benzoate anaerobic degradation regulator,homoprotocatechuate degradation operon regulator%2C HpaR,MarR family;protein_id=gnl|SC|11111_1#11_04066 ERS111111|SC|contig000020 Prodigal:2.60 CDS 12548 13837 . + 0 ID=11111_1#11_04067;eC_number=5.3.3.-;gene=hpaG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729830.1,similar to AA sequence:UniProtKB:P37352,protein motif:CLUSTERS:PRK15203,protein motif:Cdd:COG0179,protein motif:TIGRFAMs:TIGR02303,protein motif:Pfam:PF01557.12;locus_tag=11111_1#11_04067;product=4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase,4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway),4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase%2C C-terminal subunit,Fumarylacetoacetate (FAA) hydrolase family;protein_id=gnl|SC|11111_1#11_04067 ERS111111|SC|contig000020 Prodigal:2.60 CDS 13834 14133 . + 0 ID=11111_1#11_04068;eC_number=1.2.1.8;gene=hpcC_1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729831.1,similar to AA sequence:UniProtKB:Q9HTJ1,protein motif:CLUSTERS:PRK13252,protein motif:Cdd:COG3191,protein motif:TIGRFAMs:TIGR02299,protein motif:Pfam:PF00171.1;locus_tag=11111_1#11_04068;product=5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase,Betaine aldehyde dehydrogenase,betaine aldehyde dehydrogenase,L-aminopeptidase/D-esterase,5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase,Aldehyde dehydrogenase family;protein_id=gnl|SC|11111_1#11_04068 ERS111111|SC|contig000020 Prodigal:2.60 CDS 14127 15299 . + 0 ID=11111_1#11_04069;eC_number=1.2.1.-;gene=hpcC_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729831.1,similar to AA sequence:UniProtKB:P23105,protein motif:CLUSTERS:PRK13252,protein motif:Cdd:COG4230,protein motif:TIGRFAMs:TIGR02299,protein motif:Pfam:PF00171.1;locus_tag=11111_1#11_04069;product=5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase,2-hydroxymuconic semialdehyde dehydrogenase,betaine aldehyde dehydrogenase,Delta 1-pyrroline-5-carboxylate dehydrogenase,5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase,Aldehyde dehydrogenase family;protein_id=gnl|SC|11111_1#11_04069 ERS111111|SC|contig000020 Prodigal:2.60 CDS 15301 16152 . + 0 ID=11111_1#11_04070;eC_number=1.13.11.15,1.13.11.15;gene=hpcB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729832.1,similar to AA sequence:UniProtKB:Q05353,protein motif:CLUSTERS:PRK03881,protein motif:Cdd:COG0179,protein motif:TIGRFAMs:TIGR02298,protein motif:Pfam:PF02900.1;locus_tag=11111_1#11_04070;product=3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase,3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase,hypothetical protein,2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway),3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase,Catalytic LigB subunit of aromatic ring-opening dioxygenase;protein_id=gnl|SC|11111_1#11_04070 ERS111111|SC|contig000020 Prodigal:2.60 CDS 16162 16542 . + 0 ID=11111_1#11_04071;eC_number=5.3.3.10,5.3.3.10;gene=hpcD;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729833.1,similar to AA sequence:UniProtKB:Q05354,protein motif:CLUSTERS:PRK15031,protein motif:Cdd:COG3232,protein motif:Pfam:PF02962.1;locus_tag=11111_1#11_04071;product=5-carboxymethyl-2-hydroxymuconate delta-isomerase,5-carboxymethyl-2-hydroxymuconate Delta-isomerase,5-carboxymethyl-2-hydroxymuconate delta-isomerase,5-carboxymethyl-2-hydroxymuconate isomerase,5-carboxymethyl-2-hydroxymuconate isomerase;protein_id=gnl|SC|11111_1#11_04071 ERS111111|SC|contig000020 Prodigal:2.60 CDS 16686 17489 . + 0 ID=11111_1#11_04072;eC_number=4.2.-.-,4.2.1.80;gene=hpcG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729834.1,similar to AA sequence:UniProtKB:Q9S156,protein motif:CLUSTERS:PRK11342,protein motif:Cdd:COG3971,protein motif:TIGRFAMs:TIGR02312,protein motif:Pfam:PF01557.12;locus_tag=11111_1#11_04072;product=2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase,2-keto-4-pentenoate hydratase,2-keto-4-pentenoate hydratase,2-keto-4-pentenoate hydratase,2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase,Fumarylacetoacetate (FAA) hydrolase family;protein_id=gnl|SC|11111_1#11_04072 ERS111111|SC|contig000020 Prodigal:2.60 CDS 17500 18291 . + 0 ID=11111_1#11_04073;eC_number=4.1.2.-;gene=hpaI;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216043.1,similar to AA sequence:UniProtKB:Q47098,protein motif:CLUSTERS:PRK10128,protein motif:Cdd:COG2301,protein motif:TIGRFAMs:TIGR02311,protein motif:Pfam:PF03328.8;locus_tag=11111_1#11_04073;product=4-hydroxyphenylacetate catabolism,4-hydroxy-2-oxo-heptane-1%2C7-dioate aldolase,2-keto-3-deoxy-L-rhamnonate aldolase,Citrate lyase beta subunit,2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase,HpcH/HpaI aldolase/citrate lyase family;protein_id=gnl|SC|11111_1#11_04073 ERS111111|SC|contig000020 Prodigal:2.60 CDS 18363 19739 . + 0 ID=11111_1#11_04074;gene=hpaX;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729836.1,similar to AA sequence:UniProtKB:P76470,protein motif:CLUSTERS:PRK11551,protein motif:Cdd:COG2814,protein motif:TIGRFAMs:TIGR02332,protein motif:Pfam:PF07690.10;locus_tag=11111_1#11_04074;product=4-hydroxyphenylacetate permease,Inner membrane transport protein RhmT,putative 3-hydroxyphenylpropionic transporter MhpT,Arabinose efflux permease,4-hydroxyphenylacetate permease,Major Facilitator Superfamily;protein_id=gnl|SC|11111_1#11_04074 ERS111111|SC|contig000020 Prodigal:2.60 CDS 19749 20645 . + 0 ID=11111_1#11_04075;gene=hpaA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729837.1,similar to AA sequence:UniProtKB:P40408,protein motif:CLUSTERS:PRK10572,protein motif:Cdd:COG2169,protein motif:TIGRFAMs:TIGR02297,protein motif:Pfam:PF12833.1;locus_tag=11111_1#11_04075;product=4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein,Bacillibactin transport regulator,DNA-binding transcriptional regulator AraC,Adenosine deaminase,4-hydroxyphenylacetate catabolism regulatory protein HpaA,Helix-turn-helix domain;protein_id=gnl|SC|11111_1#11_04075 ERS111111|SC|contig000020 Prodigal:2.60 CDS 20659 21597 . + 0 ID=11111_1#11_04076;eC_number=3.1.26.11,3.1.26.11;gene=rnz;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087376.1,similar to AA sequence:UniProtKB:P54548,protein motif:CLUSTERS:PRK00055,protein motif:Cdd:COG5212,protein motif:TIGRFAMs:TIGR02651,protein motif:Pfam:PF12706.1;locus_tag=11111_1#11_04076;product=Ribonuclease Z,Ribonuclease Z,ribonuclease Z,Low-affinity cAMP phosphodiesterase,ribonuclease Z,Beta-lactamase superfamily domain;protein_id=gnl|SC|11111_1#11_04076 ERS111111|SC|contig000020 Prodigal:2.60 CDS 23021 23326 . - 0 ID=11111_1#11_04077;gene=cbpM;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570915.1,similar to AA sequence:UniProtKB:P63264,protein motif:CLUSTERS:PRK10265;locus_tag=11111_1#11_04077;product=chaperone-modulator protein CbpM,Chaperone modulatory protein CbpM,chaperone-modulator protein CbpM;protein_id=gnl|SC|11111_1#11_04077 ERS111111|SC|contig000020 Prodigal:2.60 CDS 23326 24246 . - 0 ID=11111_1#11_04078;gene=cbpA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729840.1,similar to AA sequence:UniProtKB:P36659,protein motif:CLUSTERS:PRK10266,protein motif:Cdd:COG5407,protein motif:TIGRFAMs:TIGR02349,protein motif:Pfam:PF01556.12;locus_tag=11111_1#11_04078;product=curved DNA-binding protein,Curved DNA-binding protein,curved DNA-binding protein CbpA,Preprotein translocase subunit Sec63,chaperone protein DnaJ,DnaJ C terminal domain;protein_id=gnl|SC|11111_1#11_04078 ERS111111|SC|contig000020 Prodigal:2.60 CDS 24482 24844 . + 0 ID=11111_1#11_04079;gene=scsA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729841.1;locus_tag=11111_1#11_04079;product=copper-sensitivity suppressor membrane protein A;protein_id=gnl|SC|11111_1#11_04079 ERS111111|SC|contig000020 Prodigal:2.60 CDS 24893 26779 . + 0 ID=11111_1#11_04080;eC_number=1.8.1.8;gene=scsB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729842.1,similar to AA sequence:UniProtKB:P36655,protein motif:CLUSTERS:PRK00293,protein motif:Cdd:COG4233,protein motif:Pfam:PF02683.9;locus_tag=11111_1#11_04080;product=copper-sensitivity suppressor membrane protein B,Thiol:disulfide interchange protein DsbD precursor,thiol:disulfide interchange protein precursor,Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis,Cytochrome C biogenesis protein transmembrane region;protein_id=gnl|SC|11111_1#11_04080 ERS111111|SC|contig000020 Prodigal:2.60 CDS 26776 27399 . + 0 ID=11111_1#11_04081;gene=scsC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729843.1,similar to AA sequence:UniProtKB:O32218,protein motif:Cdd:COG1651,protein motif:Pfam:PF01323.14;locus_tag=11111_1#11_04081;product=copper-sensitivity secreted suppressor protein C,Thiol-disulfide oxidoreductase D,Protein-disulfide isomerase,DSBA-like thioredoxin domain;protein_id=gnl|SC|11111_1#11_04081 ERS111111|SC|contig000020 Prodigal:2.60 CDS 27389 27895 . + 0 ID=11111_1#11_04082;gene=resA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145985.1,similar to AA sequence:UniProtKB:P35160,protein motif:CLUSTERS:PRK03147,protein motif:TIGRFAMs:TIGR00385,protein motif:Pfam:PF08534.4;locus_tag=11111_1#11_04082;product=suppressor for copper-sensitivity D,Thiol-disulfide oxidoreductase resA,thiol-disulfide oxidoreductase,periplasmic protein thiol:disulfide oxidoreductases%2C DsbE subfamily,Redoxin;protein_id=gnl|SC|11111_1#11_04082 ERS111111|SC|contig000020 Prodigal:2.60 CDS 28028 29269 . + 0 ID=11111_1#11_04083;eC_number=3.1.3.10;gene=agp;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570908.1,similar to AA sequence:UniProtKB:P19926,protein motif:CLUSTERS:PRK10173,protein motif:Pfam:PF00328.1;locus_tag=11111_1#11_04083;product=glucose-1-phosphatase/inositol phosphatase,Glucose-1-phosphatase precursor,glucose-1-phosphatase/inositol phosphatase,Histidine phosphatase superfamily (branch 2);protein_id=gnl|SC|11111_1#11_04083 ERS111111|SC|contig000020 Prodigal:2.60 CDS 29303 29530 . - 0 ID=11111_1#11_04084;gene=yccJ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087385.1,similar to AA sequence:UniProtKB:P0AB14,protein motif:CLUSTERS:PRK10174;locus_tag=11111_1#11_04084;product=YccJ-like protein,hypothetical protein,hypothetical protein;protein_id=gnl|SC|11111_1#11_04084 ERS111111|SC|contig000020 Prodigal:2.60 CDS 29551 30147 . - 0 ID=11111_1#11_04085;gene=wrbA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729847.1,similar to AA sequence:UniProtKB:P0A8G6,protein motif:CLUSTERS:PRK03767,protein motif:TIGRFAMs:TIGR01755,protein motif:Pfam:PF03358.9;locus_tag=11111_1#11_04085;product=trp repressor binding protein,Trp repressor-binding protein,NAD(P)H:quinone oxidoreductase,NAD(P)H:quinone oxidoreductase%2C type IV,NADPH-dependent FMN reductase;protein_id=gnl|SC|11111_1#11_04085 ERS111111|SC|contig000020 Prodigal:2.60 CDS 30532 30699 . + 0 ID=11111_1#11_04086;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087756.1,protein motif:Pfam:PF10685.3;locus_tag=11111_1#11_04086;product=Conidiation-specific protein 10,Stress-induced bacterial acidophilic repeat motif;protein_id=gnl|SC|11111_1#11_04086 ERS111111|SC|contig000020 Prodigal:2.60 CDS 30836 31474 . + 0 ID=11111_1#11_04087;gene=rutR;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729849.1,similar to AA sequence:UniProtKB:P0ACU2,protein motif:CLUSTERS:PRK15008,protein motif:TIGRFAMs:TIGR03613,protein motif:Pfam:PF08362.5;locus_tag=11111_1#11_04087;product=transcriptional regulator,Rut operon repressor,HTH-type transcriptional regulator RutR,pyrimidine utilization regulatory protein R,YcdC-like protein%2C C-terminal region;protein_id=gnl|SC|11111_1#11_04087 ERS111111|SC|contig000020 Prodigal:2.60 CDS 31471 31866 . - 0 ID=11111_1#11_04088;inference=ab initio prediction:Prodigal:2.60,protein motif:Cdd:COG3755,protein motif:Pfam:PF07007.6;locus_tag=11111_1#11_04088;product=Uncharacterized protein conserved in bacteria,Protein of unknown function (DUF1311);protein_id=gnl|SC|11111_1#11_04088 ERS111111|SC|contig000020 Prodigal:2.60 CDS 31925 35887 . - 0 ID=11111_1#11_04089;gene=putA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002243116.1,similar to AA sequence:UniProtKB:P09546,protein motif:CLUSTERS:PRK11809,protein motif:Cdd:COG4230,protein motif:TIGRFAMs:TIGR01238,protein motif:Pfam:PF01619.12;locus_tag=11111_1#11_04089;product=trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase,Bifunctional protein putA,trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase,Delta 1-pyrroline-5-carboxylate dehydrogenase,delta-1-pyrroline-5-carboxylate dehydrogenase,Proline dehydrogenase;protein_id=gnl|SC|11111_1#11_04089 ERS111111|SC|contig000020 Prodigal:2.60 CDS 36309 37817 . + 0 ID=11111_1#11_04090;gene=putP;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145994.1,similar to AA sequence:UniProtKB:P07117,protein motif:CLUSTERS:PRK15419,protein motif:Cdd:COG4145,protein motif:TIGRFAMs:TIGR02121,protein motif:Pfam:PF00474.11;locus_tag=11111_1#11_04090;product=sodium/proline symporter,Propionate transporter,proline:sodium symporter PutP,Na+/panthothenate symporter,sodium/proline symporter,Sodium:solute symporter family;protein_id=gnl|SC|11111_1#11_04090 ERS111111|SC|contig000020 Prodigal:2.60 CDS 38435 38731 . + 0 ID=11111_1#11_04091;inference=ab initio prediction:Prodigal:2.60;locus_tag=11111_1#11_04091;product=hypothetical protein;protein_id=gnl|SC|11111_1#11_04091 ERS111111|SC|contig000020 Prodigal:2.60 CDS 38710 39498 . + 0 ID=11111_1#11_04092;gene=phoH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729855.1,similar to AA sequence:UniProtKB:P0A9K1,protein motif:CLUSTERS:PRK10536,protein motif:Cdd:COG1875,protein motif:Pfam:PF02562.10;locus_tag=11111_1#11_04092;product=phosphate starvation-inducible protein PsiH,Phosphate starvation-inducible protein psiH,hypothetical protein,Predicted ATPase related to phosphate starvation-inducible protein PhoH,PhoH-like protein;protein_id=gnl|SC|11111_1#11_04092 ERS111111|SC|contig000020 Prodigal:2.60 CDS 39604 40485 . - 0 ID=11111_1#11_04093;gene=ybbH_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570898.1,similar to AA sequence:UniProtKB:Q45581,protein motif:CLUSTERS:PRK11337,protein motif:Cdd:COG2222,protein motif:TIGRFAMs:TIGR03127,protein motif:Pfam:PF01418.11;locus_tag=11111_1#11_04093;product=putative transcriptional regulator,Uncharacterized HTH-type transcriptional regulator ybbH,DNA-binding transcriptional repressor RpiR,Predicted phosphosugar isomerases,6-phospho 3-hexuloisomerase,Helix-turn-helix domain%2C rpiR family;protein_id=gnl|SC|11111_1#11_04093 ERS111111|SC|contig000020 Infernal:1.1 ncRNA 40486 40770 . + 0 ID=11111_1#11_04094;inference=COORDINATES:profile:Infernal:1.1;locus_tag=11111_1#11_04094;product=STnc500 ERS111111|SC|contig000020 Prodigal:2.60 CDS 40771 41673 . - 0 ID=11111_1#11_04095;gene=yidK;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002215057.1,similar to AA sequence:UniProtKB:P31448,protein motif:CLUSTERS:PRK10484,protein motif:Cdd:COG4146,protein motif:TIGRFAMs:TIGR00813,protein motif:Pfam:PF00474.11;locus_tag=11111_1#11_04095;product=sodium-glucose/galactose cotransporter,Uncharacterized symporter yidK,putative transporter,Predicted symporter,transporter%2C solute:sodium symporter (SSS) family,Sodium:solute symporter family;protein_id=gnl|SC|11111_1#11_04095 ERS111111|SC|contig000020 Prodigal:2.60 CDS 41741 42268 . - 0 ID=11111_1#11_04096;gene=sglT;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002215057.1,similar to AA sequence:UniProtKB:P96169,protein motif:CLUSTERS:PRK10484,protein motif:Cdd:COG4146,protein motif:TIGRFAMs:TIGR00813,protein motif:Pfam:PF00474.11;locus_tag=11111_1#11_04096;product=sodium-glucose/galactose cotransporter,Na(+)/glucose symporter,putative transporter,Predicted symporter,transporter%2C solute:sodium symporter (SSS) family,Sodium:solute symporter family;protein_id=gnl|SC|11111_1#11_04096 ERS111111|SC|contig000020 Prodigal:2.60 CDS 42605 43285 . - 0 ID=11111_1#11_04097;eC_number=5.1.3.9;gene=nanE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570896.2,similar to AA sequence:UniProtKB:P60668,protein motif:CLUSTERS:PRK01130,protein motif:Pfam:PF04131.8;locus_tag=11111_1#11_04097;product=N-acetylmannosamine-6-phosphate 2-epimerase,Putative N-acetylmannosamine-6-phosphate 2-epimerase,N-acetylmannosamine-6-phosphate 2-epimerase,Putative N-acetylmannosamine-6-phosphate epimerase;protein_id=gnl|SC|11111_1#11_04097 ERS111111|SC|contig000020 Prodigal:2.60 CDS 43804 44946 . + 0 ID=11111_1#11_04098;eC_number=5.1.3.24;gene=nanM;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570895.1,similar to AA sequence:UniProtKB:P44544,protein motif:CLUSTERS:PRK14131,protein motif:TIGRFAMs:TIGR03547,protein motif:Pfam:PF01344.19;locus_tag=11111_1#11_04098;product=N-acetylneuraminic acid mutarotase,N-acetylneuraminate epimerase precursor,N-acetylneuraminic acid mutarotase,mutatrotase%2C YjhT family,Kelch motif;protein_id=gnl|SC|11111_1#11_04098 ERS111111|SC|contig000020 Prodigal:2.60 CDS 44992 45684 . + 0 ID=11111_1#11_04099;gene=yiiy;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216068.1,similar to AA sequence:UniProtKB:Q934G3,protein motif:CLUSTERS:PRK09980,protein motif:Cdd:COG3203,protein motif:Pfam:PF06178.7;locus_tag=11111_1#11_04099;product=outer membrane protein,Oligogalacturonate-specific porin kdgM precursor,outer membrane porin L,Outer membrane protein (porin),Oligogalacturonate-specific porin protein (KdgM);protein_id=gnl|SC|11111_1#11_04099 ERS111111|SC|contig000020 Prodigal:2.60 CDS 45967 47247 . + 0 ID=11111_1#11_04100;gene=nanT_3;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570893.1,similar to AA sequence:UniProtKB:P41036,protein motif:CLUSTERS:PRK12307,protein motif:Cdd:COG2814,protein motif:TIGRFAMs:TIGR00891,protein motif:Pfam:PF00083.18;locus_tag=11111_1#11_04100;product=putative sialic acid transporter,Sialic acid permease,putative sialic acid transporter,Arabinose efflux permease,MFS transporter%2C sialate:H+ symporter (SHS) family,Sugar (and other) transporter;protein_id=gnl|SC|11111_1#11_04100 ERS111111|SC|contig000020 Prodigal:2.60 CDS 47261 48364 . + 0 ID=11111_1#11_04101;eC_number=1.1.1.292;gene=yjhC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216069.1,similar to AA sequence:UniProtKB:Q2I8V6,protein motif:CLUSTERS:PRK11579,protein motif:Pfam:PF01408.16;locus_tag=11111_1#11_04101;product=dehydrogenase-like protein,1%2C5-anhydro-D-fructose reductase,putative oxidoreductase,Oxidoreductase family%2C NAD-binding Rossmann fold;protein_id=gnl|SC|11111_1#11_04101 ERS111111|SC|contig000020 Aragorn:1.2.36 tRNA 48701 48788 . - 0 ID=11111_1#11_04102;inference=COORDINATES:profile:Aragorn:1.2.36;locus_tag=11111_1#11_04102;product=tRNA-Ser(gga) ERS111111|SC|contig000020 Prodigal:2.60 CDS 49024 49962 . + 0 ID=11111_1#11_04103;eC_number=1.1.1.79;gene=ghrA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729856.1,similar to AA sequence:UniProtKB:Q8ZQ30,protein motif:CLUSTERS:PRK15469,protein motif:Cdd:COG1932,protein motif:TIGRFAMs:TIGR01327,protein motif:Pfam:PF02826.13;locus_tag=11111_1#11_04103;product=2-hydroxyacid dehydrogenase,Glyoxylate/hydroxypyruvate reductase A,bifunctional glyoxylate/hydroxypyruvate reductase A,Phosphoserine aminotransferase,phosphoglycerate dehydrogenase,D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain;protein_id=gnl|SC|11111_1#11_04103 ERS111111|SC|contig000020 Prodigal:2.60 CDS 50047 50784 . + 0 ID=11111_1#11_04104;eC_number=3.1.3.-;gene=ycdX;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570887.1,similar to AA sequence:UniProtKB:P75914,protein motif:CLUSTERS:PRK09248,protein motif:Cdd:COG1387,protein motif:TIGRFAMs:TIGR01856,protein motif:Pfam:PF02811.13;locus_tag=11111_1#11_04104;product=putative hydrolase,Probable phosphatase YcdX,putative hydrolase,Histidinol phosphatase and related hydrolases of the PHP family,histidinol phosphate phosphatase%2C HisJ family,PHP domain;protein_id=gnl|SC|11111_1#11_04104 ERS111111|SC|contig000020 Prodigal:2.60 CDS 50808 51362 . + 0 ID=11111_1#11_04105;gene=ycdY;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002146908.1,similar to AA sequence:UniProtKB:P75915,protein motif:CLUSTERS:PRK11621,protein motif:Cdd:COG3381,protein motif:Pfam:PF02613.9;locus_tag=11111_1#11_04105;product=chaperone%2C TorD family,Chaperone protein YcdY,twin-argninine leader-binding protein DmsD,Uncharacterized component of anaerobic dehydrogenases,Nitrate reductase delta subunit;protein_id=gnl|SC|11111_1#11_04105 ERS111111|SC|contig000020 Prodigal:2.60 CDS 51451 51945 . + 0 ID=11111_1#11_04106;gene=ycdZ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P75916,protein motif:Pfam:PF06496.5;locus_tag=11111_1#11_04106;product=Inner membrane protein ycdZ,Protein of unknown function (DUF1097);protein_id=gnl|SC|11111_1#11_04106 ERS111111|SC|contig000020 Prodigal:2.60 CDS 51983 52816 . - 0 ID=11111_1#11_04107;gene=csgG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729860.1,protein motif:CLUSTERS:PRK15184,protein motif:Pfam:PF03783.8;locus_tag=11111_1#11_04107;product=assembly/transport component in curli production,curli production assembly/transport protein CsgG,Curli production assembly/transport component CsgG;protein_id=gnl|SC|11111_1#11_04107 ERS111111|SC|contig000020 Prodigal:2.60 CDS 52843 53259 . - 0 ID=11111_1#11_04108;gene=csgF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729861.1,protein motif:CLUSTERS:PRK10050,protein motif:Pfam:PF10614.3;locus_tag=11111_1#11_04108;product=assembly/transport component in curli production,curli assembly protein CsgF,Curli production assembly/transport component CsgF;protein_id=gnl|SC|11111_1#11_04108 ERS111111|SC|contig000020 Prodigal:2.60 CDS 53286 53681 . - 0 ID=11111_1#11_04109;gene=csgE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729862.1,protein motif:CLUSTERS:PRK10386,protein motif:Pfam:PF10627.3;locus_tag=11111_1#11_04109;product=assembly/transport component in curli production,curli assembly protein CsgE,Curli assembly protein CsgE;protein_id=gnl|SC|11111_1#11_04109 ERS111111|SC|contig000020 Prodigal:2.60 CDS 53710 54336 . - 0 ID=11111_1#11_04110;gene=csgD;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729863.1,similar to AA sequence:UniProtKB:P52106,protein motif:CLUSTERS:PRK10100,protein motif:Cdd:COG2909,protein motif:TIGRFAMs:TIGR03020,protein motif:Pfam:PF00196.13;locus_tag=11111_1#11_04110;product=regulatory protein,CsgBAC operon transcriptional regulatory protein,DNA-binding transcriptional regulator CsgD,ATP-dependent transcriptional regulator,transcriptional regulator EpsA,Bacterial regulatory proteins%2C luxR family;protein_id=gnl|SC|11111_1#11_04110 ERS111111|SC|contig000020 Prodigal:2.60 CDS 55092 55547 . + 0 ID=11111_1#11_04111;gene=csgB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729864.1,similar to AA sequence:UniProtKB:P0A1E9,protein motif:CLUSTERS:PRK10101,protein motif:Pfam:PF07012.6;locus_tag=11111_1#11_04111;product=nucleation component of curlin monomers,Fimbrin SEF17 minor subunit,curlin minor subunit CsgB,Curlin associated repeat;protein_id=gnl|SC|11111_1#11_04111 ERS111111|SC|contig000020 Prodigal:2.60 CDS 55589 56044 . + 0 ID=11111_1#11_04112;gene=csgA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729865.1,similar to AA sequence:UniProtKB:P0A1E7,protein motif:CLUSTERS:PRK10051,protein motif:Pfam:PF07012.6;locus_tag=11111_1#11_04112;product=major curlin subunit,Fimbrin SEF17,major curlin subunit,Curlin associated repeat;protein_id=gnl|SC|11111_1#11_04112 ERS111111|SC|contig000020 Prodigal:2.60 CDS 56106 56432 . + 0 ID=11111_1#11_04113;gene=csgC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_007470940.1,similar to AA sequence:UniProtKB:P0A1Z9,protein motif:CLUSTERS:PRK10102,protein motif:Pfam:PF10610.3;locus_tag=11111_1#11_04113;product=curli assembly protein CsgC,Curli assembly protein CsgC precursor,curli assembly protein CsgC,Thin aggregative fimbriae synthesis protein;protein_id=gnl|SC|11111_1#11_04113 ERS111111|SC|contig000020 Prodigal:2.60 CDS 56564 56884 . + 0 ID=11111_1#11_04114;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087410.1;locus_tag=11111_1#11_04114;product=Fimbrial protein;protein_id=gnl|SC|11111_1#11_04114 ERS111111|SC|contig000020 Prodigal:2.60 CDS 56972 57511 . + 0 ID=11111_1#11_04115;eC_number=3.5.1.-;gene=ymdB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087411.1,similar to AA sequence:UniProtKB:P0A8D6,protein motif:CLUSTERS:PRK00431,protein motif:Pfam:PF01661.15;locus_tag=11111_1#11_04115;product=Macro domain%2C possibly ADP-ribose binding module,O-acetyl-ADP-ribose deacetylase,RNase III inhibitor,Macro domain;protein_id=gnl|SC|11111_1#11_04115 ERS111111|SC|contig000020 Prodigal:2.60 CDS 57450 58934 . + 0 ID=11111_1#11_04116;eC_number=2.7.8.-;gene=ybhO_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570877.2,similar to AA sequence:UniProtKB:P0AA84,protein motif:CLUSTERS:PRK01642,protein motif:TIGRFAMs:TIGR04265;locus_tag=11111_1#11_04116;product=phospholipase,Putative cardiolipin synthase YbhO,cardiolipin synthetase,cardiolipin synthase;protein_id=gnl|SC|11111_1#11_04116 ERS111111|SC|contig000020 Prodigal:2.60 CDS 58951 60105 . - 0 ID=11111_1#11_04117;eC_number=2.1.-.-;gene=mdoC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570876.1,similar to AA sequence:UniProtKB:P75920,protein motif:CLUSTERS:PRK03854,protein motif:Cdd:COG3274,protein motif:Pfam:PF01757.16;locus_tag=11111_1#11_04117;product=glucans biosynthesis protein,Glucans biosynthesis protein C,glucans biosynthesis protein,Uncharacterized protein conserved in bacteria,Acyltransferase family;protein_id=gnl|SC|11111_1#11_04117 ERS111111|SC|contig000020 Prodigal:2.60 CDS 60359 61912 . + 0 ID=11111_1#11_04118;gene=mdoG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570875.1,similar to AA sequence:UniProtKB:P33136,protein motif:CLUSTERS:PRK13274,protein motif:Cdd:COG3131,protein motif:Pfam:PF04349.6;locus_tag=11111_1#11_04118;product=glucan biosynthesis protein G,Glucans biosynthesis protein G precursor,glucan biosynthesis protein G,Periplasmic glucans biosynthesis protein,Periplasmic glucan biosynthesis protein%2C MdoG;protein_id=gnl|SC|11111_1#11_04118 ERS111111|SC|contig000020 Prodigal:2.60 CDS 61905 64448 . + 0 ID=11111_1#11_04119;eC_number=2.4.1.-;gene=mdoH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216085.1,similar to AA sequence:UniProtKB:P62517,protein motif:CLUSTERS:PRK05454,protein motif:Pfam:PF00535.20;locus_tag=11111_1#11_04119;product=glucosyltransferase MdoH,Glucans biosynthesis glucosyltransferase H,glucosyltransferase MdoH,Glycosyl transferase family 2;protein_id=gnl|SC|11111_1#11_04119 ERS111111|SC|contig000020 Prodigal:2.60 CDS 64522 64749 . + 0 ID=11111_1#11_04120;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729872.1,protein motif:CLUSTERS:PRK10175,protein motif:Cdd:COG5645,protein motif:Pfam:PF07119.6;locus_tag=11111_1#11_04120;product=lipoprotein,lipoprotein,Predicted periplasmic lipoprotein,Protein of unknown function (DUF1375);protein_id=gnl|SC|11111_1#11_04120 ERS111111|SC|contig000020 Prodigal:2.60 CDS 64750 65124 . - 0 ID=11111_1#11_04121;gene=msyB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729873.1,protein motif:CLUSTERS:PRK11467;locus_tag=11111_1#11_04121;product=acidic protein MsyB,secY/secA suppressor protein;protein_id=gnl|SC|11111_1#11_04121 ERS111111|SC|contig000020 Prodigal:2.60 CDS 65206 66420 . - 0 ID=11111_1#11_04122;gene=yceE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729874.1,similar to AA sequence:UniProtKB:O31762,protein motif:CLUSTERS:PRK09874,protein motif:Cdd:COG2814,protein motif:TIGRFAMs:TIGR00880,protein motif:Pfam:PF07690.10;locus_tag=11111_1#11_04122;product=membrane transport protein,Bacillibactin exporter,drug efflux system protein MdtG,Arabinose efflux permease,multidrug resistance protein,Major Facilitator Superfamily;protein_id=gnl|SC|11111_1#11_04122 ERS111111|SC|contig000020 Prodigal:2.60 CDS 66575 67495 . - 0 ID=11111_1#11_04123;eC_number=2.3.1.-;gene=htrB_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729875.1,similar to AA sequence:UniProtKB:P0ACV0,protein motif:CLUSTERS:PRK06860,protein motif:Cdd:COG1560,protein motif:TIGRFAMs:TIGR02207,protein motif:Pfam:PF03279.7;locus_tag=11111_1#11_04123;product=lipid A biosynthesis lauroyl acyltransferase,Lipid A biosynthesis lauroyl acyltransferase,lipid A biosynthesis lauroyl acyltransferase,Lauroyl/myristoyl acyltransferase,lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase,Bacterial lipid A biosynthesis acyltransferase;protein_id=gnl|SC|11111_1#11_04123 ERS111111|SC|contig000020 Prodigal:2.60 CDS 67715 68767 . + 0 ID=11111_1#11_04124;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087420.1,protein motif:CLUSTERS:PRK00142,protein motif:Cdd:COG2210,protein motif:Pfam:PF00581.14;locus_tag=11111_1#11_04124;product=Rhodanese-like sulfurtransferase,putative rhodanese-related sulfurtransferase,Uncharacterized conserved protein,Rhodanese-like domain;protein_id=gnl|SC|11111_1#11_04124 ERS111111|SC|contig000020 Prodigal:2.60 CDS 68819 69394 . - 0 ID=11111_1#11_04125;gene=yceI_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087865.1,similar to AA sequence:UniProtKB:P0A8X2,protein motif:CLUSTERS:PRK03757,protein motif:Cdd:COG2353,protein motif:Pfam:PF04264.7;locus_tag=11111_1#11_04125;product=YceI protein,hypothetical protein,hypothetical protein,Uncharacterized conserved protein,YceI-like domain;protein_id=gnl|SC|11111_1#11_04125 ERS111111|SC|contig000020 Prodigal:2.60 CDS 69391 69795 . - 0 ID=11111_1#11_04126;gene=yceJ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_005212184.1,similar to AA sequence:UniProtKB:P75925,protein motif:CLUSTERS:PRK11513,protein motif:Pfam:PF00033.13;locus_tag=11111_1#11_04126;product=cytochrome b561-like protein 2,Cytochrome b561 homolog 2,cytochrome b561,Cytochrome b(N-terminal)/b6/petB;protein_id=gnl|SC|11111_1#11_04126 ERS111111|SC|contig000020 Prodigal:2.60 CDS 70226 70339 . - 0 ID=11111_1#11_04127;gene=yceO;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216094.1,similar to AA sequence:UniProtKB:P64442,protein motif:Pfam:PF10968.2;locus_tag=11111_1#11_04127;product=inner membrane protein,hypothetical protein,Protein of unknown function (DUF2770);protein_id=gnl|SC|11111_1#11_04127 ERS111111|SC|contig000020 Prodigal:2.60 CDS 70380 71498 . - 0 ID=11111_1#11_04128;eC_number=1.5.3.1,1.5.3.-;gene=solA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729880.1,similar to AA sequence:UniProtKB:P40874,protein motif:CLUSTERS:PRK11259,protein motif:Cdd:COG4121,protein motif:TIGRFAMs:TIGR01377,protein motif:Pfam:PF01266.18;locus_tag=11111_1#11_04128;product=sarcosine oxidase,N-methyl-L-tryptophan oxidase,N-methyltryptophan oxidase,Uncharacterized conserved protein,sarcosine oxidase%2C monomeric form,FAD dependent oxidoreductase;protein_id=gnl|SC|11111_1#11_04128 ERS111111|SC|contig000020 Prodigal:2.60 CDS 71611 71865 . - 0 ID=11111_1#11_04129;gene=bssS;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570863.1,protein motif:CLUSTERS:PRK12301;locus_tag=11111_1#11_04129;product=biofilm formation regulatory protein BssS,biofilm formation regulatory protein BssS;protein_id=gnl|SC|11111_1#11_04129 ERS111111|SC|contig000020 Prodigal:2.60 CDS 72155 72418 . - 0 ID=11111_1#11_04130;gene=dinI_3;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729882.1,similar to AA sequence:UniProtKB:P0ABR1,protein motif:CLUSTERS:PRK10597,protein motif:Pfam:PF06183.7;locus_tag=11111_1#11_04130;product=damage-inducible protein,DNA-damage-inducible protein I,DNA damage-inducible protein I,DinI-like family;protein_id=gnl|SC|11111_1#11_04130 ERS111111|SC|contig000020 Prodigal:2.60 CDS 72492 73538 . - 0 ID=11111_1#11_04131;eC_number=3.5.2.3,3.5.2.3;gene=pyrC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729883.1,similar to AA sequence:UniProtKB:P06204,protein motif:CLUSTERS:PRK05451,protein motif:Cdd:COG0418,protein motif:TIGRFAMs:TIGR00856,protein motif:Pfam:PF01979.14;locus_tag=11111_1#11_04131;product=dihydroorotase,Dihydroorotase,dihydroorotase,Dihydroorotase,dihydroorotase%2C homodimeric type,Amidohydrolase family;protein_id=gnl|SC|11111_1#11_04131 ERS111111|SC|contig000020 Prodigal:2.60 CDS 73642 74268 . - 0 ID=11111_1#11_04132;gene=yceB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_007470922.1,similar to AA sequence:UniProtKB:P0AB26,protein motif:CLUSTERS:PRK10598,protein motif:Pfam:PF07273.6;locus_tag=11111_1#11_04132;product=lipoprotein,Uncharacterized lipoprotein yceB precursor,lipoprotein,Protein of unknown function (DUF1439);protein_id=gnl|SC|11111_1#11_04132 ERS111111|SC|contig000020 Prodigal:2.60 CDS 74326 74973 . - 0 ID=11111_1#11_04133;gene=grxB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729885.1,similar to AA sequence:UniProtKB:P0AC59,protein motif:CLUSTERS:PRK10387,protein motif:TIGRFAMs:TIGR02182,protein motif:Pfam:PF04399.7;locus_tag=11111_1#11_04133;product=glutaredoxin,Glutaredoxin-2,glutaredoxin 2,glutaredoxin%2C GrxB family,Glutaredoxin 2%2C C terminal domain;protein_id=gnl|SC|11111_1#11_04133 ERS111111|SC|contig000020 Prodigal:2.60 CDS 75037 76245 . - 0 ID=11111_1#11_04134;gene=mdtH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570858.1,similar to AA sequence:UniProtKB:P69367,protein motif:CLUSTERS:PRK11646,protein motif:Cdd:COG2814,protein motif:TIGRFAMs:TIGR00880,protein motif:Pfam:PF07690.10;locus_tag=11111_1#11_04134;product=multidrug resistance protein MdtH,Multidrug resistance protein MdtH,multidrug resistance protein MdtH,Arabinose efflux permease,multidrug resistance protein,Major Facilitator Superfamily;protein_id=gnl|SC|11111_1#11_04134 ERS111111|SC|contig000020 Prodigal:2.60 CDS 76482 77066 . + 0 ID=11111_1#11_04135;eC_number=2.3.1.-;gene=rimJ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729887.1,similar to AA sequence:UniProtKB:P96579,protein motif:CLUSTERS:PRK10809,protein motif:TIGRFAMs:TIGR03585,protein motif:Pfam:PF00583.18;locus_tag=11111_1#11_04135;product=ribosomal-protein-alanine acetyltransferase,Putative ribosomal N-acetyltransferase YdaF,ribosomal-protein-S5-alanine N-acetyltransferase,pseudaminic acid biosynthesis N-acetyl transferase,Acetyltransferase (GNAT) family;protein_id=gnl|SC|11111_1#11_04135 ERS111111|SC|contig000020 Prodigal:2.60 CDS 77102 77749 . + 0 ID=11111_1#11_04136;gene=yceH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P29217,protein motif:CLUSTERS:PRK11239,protein motif:Cdd:COG3132,protein motif:Pfam:PF04337.6;locus_tag=11111_1#11_04136;product=G20.3,hypothetical protein,Uncharacterized protein conserved in bacteria,Protein of unknown function%2C DUF480;protein_id=gnl|SC|11111_1#11_04136 ERS111111|SC|contig000020 Prodigal:2.60 CDS 77751 78674 . + 0 ID=11111_1#11_04137;gene=mviM;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729889.1,similar to AA sequence:UniProtKB:P75931,protein motif:CLUSTERS:PRK11579,protein motif:Cdd:COG3132,protein motif:Pfam:PF01408.16;locus_tag=11111_1#11_04137;product=virulence factor MviM,Virulence factor mviM homolog,putative oxidoreductase,Uncharacterized protein conserved in bacteria,Oxidoreductase family%2C NAD-binding Rossmann fold;protein_id=gnl|SC|11111_1#11_04137 ERS111111|SC|contig000020 Prodigal:2.60 CDS 78939 80513 . + 0 ID=11111_1#11_04138;gene=mviN;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002146873.1,similar to AA sequence:UniProtKB:P37169,protein motif:TIGRFAMs:TIGR01695,protein motif:Pfam:PF03023.8;locus_tag=11111_1#11_04138;product=integral membrane protein MviN,hypothetical protein,integral membrane protein MviN,MviN-like protein;protein_id=gnl|SC|11111_1#11_04138 ERS111111|SC|contig000020 Prodigal:2.60 CDS 80595 81017 . - 0 ID=11111_1#11_04139;gene=flgN;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729891.1,protein motif:CLUSTERS:PRK15459,protein motif:Pfam:PF05130.6;locus_tag=11111_1#11_04139;product=flagella synthesis protein FlgN,flagella synthesis chaperone protein FlgN,FlgN protein;protein_id=gnl|SC|11111_1#11_04139 ERS111111|SC|contig000020 Prodigal:2.60 CDS 81022 81315 . - 0 ID=11111_1#11_04140;gene=flgM;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729892.1,similar to AA sequence:UniProtKB:P26477,protein motif:CLUSTERS:PRK10810,protein motif:TIGRFAMs:TIGR03824,protein motif:Pfam:PF04316.7;locus_tag=11111_1#11_04140;product=negative regulator of flagellin synthesis (anti-sigma factor),Anti-sigma-28 factor,anti-sigma28 factor FlgM,flagellar biosynthesis anti-sigma factor FlgM,Anti-sigma-28 factor%2C FlgM;protein_id=gnl|SC|11111_1#11_04140 ERS111111|SC|contig000020 Prodigal:2.60 CDS 81407 82066 . - 0 ID=11111_1#11_04141;gene=flgA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729893.1,protein motif:CLUSTERS:PRK07018,protein motif:TIGRFAMs:TIGR03170,protein motif:Pfam:PF08666.6;locus_tag=11111_1#11_04141;product=flagellar basal body P-ring protein FlgA,flagellar basal body P-ring biosynthesis protein FlgA,flagella basal body P-ring formation protein FlgA,SAF domain;protein_id=gnl|SC|11111_1#11_04141 ERS111111|SC|contig000020 Prodigal:2.60 CDS 82223 82639 . + 0 ID=11111_1#11_04142;gene=flgB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729894.1,similar to AA sequence:UniProtKB:P16437,protein motif:CLUSTERS:PRK05680,protein motif:Cdd:COG1815,protein motif:TIGRFAMs:TIGR01396,protein motif:Pfam:PF00460.14;locus_tag=11111_1#11_04142;product=flagellar basal-body rod protein FlgB,Putative proximal rod protein,flagellar basal body rod protein FlgB,Flagellar basal body protein,flagellar basal-body rod protein FlgB,Flagella basal body rod protein;protein_id=gnl|SC|11111_1#11_04142 ERS111111|SC|contig000020 Prodigal:2.60 CDS 82643 83047 . + 0 ID=11111_1#11_04143;gene=flgC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729895.1,similar to AA sequence:UniProtKB:P0A1I7,protein motif:CLUSTERS:PRK05681,protein motif:Cdd:COG4786,protein motif:TIGRFAMs:TIGR01395,protein motif:Pfam:PF06429.7;locus_tag=11111_1#11_04143;product=flagellar basal-body rod protein FlgC,Putative proximal rod protein,flagellar basal body rod protein FlgC,Flagellar basal body rod protein,flagellar basal-body rod protein FlgC,Domain of unknown function (DUF1078);protein_id=gnl|SC|11111_1#11_04143 ERS111111|SC|contig000020 Prodigal:2.60 CDS 83059 83757 . + 0 ID=11111_1#11_04144;gene=flgD;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729896.1,similar to AA sequence:UniProtKB:P0A1I9,protein motif:CLUSTERS:PRK06655,protein motif:Cdd:COG1843,protein motif:Pfam:PF03963.8;locus_tag=11111_1#11_04144;product=flagellar hook formation protein FlgD,Basal-body rod modification protein flgD,flagellar basal body rod modification protein,Flagellar hook capping protein,Flagellar hook capping protein;protein_id=gnl|SC|11111_1#11_04144 ERS111111|SC|contig000020 Prodigal:2.60 CDS 83784 84995 . + 0 ID=11111_1#11_04145;gene=flgE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002146866.1,similar to AA sequence:UniProtKB:P0A1J1,protein motif:CLUSTERS:PRK05682,protein motif:Cdd:COG1749,protein motif:TIGRFAMs:TIGR03506,protein motif:Pfam:PF07559.8;locus_tag=11111_1#11_04145;product=flagellar hook protein FlgE,Flagellar hook protein flgE,flagellar hook protein FlgE,Flagellar hook protein FlgE,flagellar hook-basal body protein,Flagellar basal body protein FlaE;protein_id=gnl|SC|11111_1#11_04145 ERS111111|SC|contig000020 Prodigal:2.60 CDS 85016 85771 . + 0 ID=11111_1#11_04146;gene=flgF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729898.1,similar to AA sequence:UniProtKB:P16323,protein motif:CLUSTERS:PRK12640,protein motif:Cdd:COG4787,protein motif:TIGRFAMs:TIGR03506,protein motif:Pfam:PF06429.7;locus_tag=11111_1#11_04146;product=flagellar basal-body rod protein FlgF,Putative proximal rod protein,flagellar basal body rod protein FlgF,Flagellar basal body rod protein,flagellar hook-basal body protein,Domain of unknown function (DUF1078);protein_id=gnl|SC|11111_1#11_04146 ERS111111|SC|contig000020 Prodigal:2.60 CDS 85785 86567 . + 0 ID=11111_1#11_04147;gene=flgG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729899.1,similar to AA sequence:UniProtKB:P0A1J3,protein motif:CLUSTERS:PRK12694,protein motif:Cdd:COG4786,protein motif:TIGRFAMs:TIGR02488,protein motif:Pfam:PF06429.7;locus_tag=11111_1#11_04147;product=flagellar basal-body rod protein FlgG (distal rod protein),Distal rod protein,flagellar basal body rod protein FlgG,Flagellar basal body rod protein,flagellar basal-body rod protein FlgG,Domain of unknown function (DUF1078);protein_id=gnl|SC|11111_1#11_04147 ERS111111|SC|contig000020 Prodigal:2.60 CDS 86655 87320 . + 0 ID=11111_1#11_04148;gene=flgH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729900.1,similar to AA sequence:UniProtKB:Q9PPM0,protein motif:CLUSTERS:PRK00249,protein motif:Pfam:PF02107.10;locus_tag=11111_1#11_04148;product=flagellar L-ring protein,Basal body L-ring protein,flagellar basal body L-ring protein,Flagellar L-ring protein;protein_id=gnl|SC|11111_1#11_04148 ERS111111|SC|contig000020 Prodigal:2.60 CDS 87332 88429 . + 0 ID=11111_1#11_04149;gene=flgI;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729901.1,similar to AA sequence:UniProtKB:Q9PMJ8,protein motif:CLUSTERS:PRK05303,protein motif:Cdd:COG1706,protein motif:Pfam:PF02119.10;locus_tag=11111_1#11_04149;product=flagellar P-ring protein,Basal body P-ring protein,flagellar basal body P-ring protein,Flagellar basal-body P-ring protein,Flagellar P-ring protein;protein_id=gnl|SC|11111_1#11_04149 ERS111111|SC|contig000020 Prodigal:2.60 CDS 88429 89379 . + 0 ID=11111_1#11_04150;eC_number=3.2.1.-;gene=flgJ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729902.1,similar to AA sequence:UniProtKB:P15931,protein motif:CLUSTERS:PRK05684,protein motif:Cdd:COG3951,protein motif:TIGRFAMs:TIGR02541,protein motif:Pfam:PF01832.14;locus_tag=11111_1#11_04150;product=flagellar protein FlgJ,Peptidoglycan hydrolase flgJ,flagellar rod assembly protein/muramidase FlgJ,Rod binding protein,flagellar rod assembly protein/muramidase FlgJ,Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase;protein_id=gnl|SC|11111_1#11_04150 ERS111111|SC|contig000020 Prodigal:2.60 CDS 89444 91105 . + 0 ID=11111_1#11_04151;gene=flgK;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729903.1,similar to AA sequence:UniProtKB:P0A1J5,protein motif:CLUSTERS:PRK08147,protein motif:Cdd:COG1749,protein motif:TIGRFAMs:TIGR02492,protein motif:Pfam:PF06429.7;locus_tag=11111_1#11_04151;product=flagellar hook-associated protein 1,Flagellar hook-associated protein 1,flagellar hook-associated protein FlgK,Flagellar hook protein FlgE,flagellar hook-associated protein FlgK,Domain of unknown function (DUF1078);protein_id=gnl|SC|11111_1#11_04151 ERS111111|SC|contig000020 Prodigal:2.60 CDS 91120 92073 . + 0 ID=11111_1#11_04152;gene=flgL;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729904.1,similar to AA sequence:UniProtKB:P16326,protein motif:CLUSTERS:PRK08027,protein motif:Cdd:COG3951,protein motif:TIGRFAMs:TIGR02550,protein motif:Pfam:PF00669.14;locus_tag=11111_1#11_04152;product=flagellar hook-associated protein 3,Hook-filament junction protein,flagellar hook-associated protein FlgL,Rod binding protein,flagellar hook-associated protein 3,Bacterial flagellin N-terminal helical region;protein_id=gnl|SC|11111_1#11_04152 ERS111111|SC|contig000020 Infernal:1.1 ncRNA 92162 92255 . + 0 ID=11111_1#11_04153;inference=COORDINATES:profile:Infernal:1.1;locus_tag=11111_1#11_04153;product=STnc490k ##FASTA >ERS111111|SC|contig000020 TATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTTGATGCAAATGTCAGATCGT ATGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTACAGGCGCATCAGAAAAACCTCCG GCTATGCCGGAGGATATTTATTTTTTGGGCGCTTAGAATATAGTTAGAAAATACTGCTAG AACATTTCCCGAAAAAACGGACTACGTGGGTTTTTAGTTTCTTTTCGTTTCTTGATGTGT CTATTTATTGAAGATGTAGACCATTCTGGGAGGTGAAGGATGCCCCATCTCTTTCAGAAT AATGTTGGTATATTCGACAACAGGGCCTCTTGGATGATTTTCTTCTTTATCCTGAAGATG GGTCAGTGCATGTACAACTTCATGAGTAAATGAACGTTTTGTGTCAAAAAGTTGTCTTCC TTCGTTACTTTCATAATGTTCGGTATATGAATCATCAGAATCGTCCAGATTGAGACAAAT AACTTTCCTGCCTTCTGAAAGTTTGAAGTGTTCCTGAGCCACGGTAGTTTCAAAGGCTTC GCCTGCCCCCGGTAGCCAGCGCTGCTCCACATCATGTAGTTCTTTTTCATATGCGTAATT CATCAGTCTGCGGAATGTTTCGCTTTGGGTATACGCATTTTGAAGTACGGAGGATAGTTC ATCGTAGCATTCGTCATAAGTGTCGTCATCAATTTCTGTATCAGGGTCTATTCCACCCGC GCCTGAGATAAGGTACTCCACCACACACTCTGGCTCCAGACGGAATTCACTGTTTATGGC AAGGCTGTCATGAGCAAGGCGTAGCCGTGAGGGGTTTGGTGCATGTTCGGGAATATCGGG GAAAACAGGTGTATCTGCGGTATTTAATCCATATGTGGATACTCCGCTTTGAGGTATTAA TCTGTAGGTGACCGGAAGCATAATTTCTTATTCCCTGACTGCAATTATGAATTATTTAAA TTAAACAATAATAGTGTTTTTAGTTAATGTGCCACATACAGATAACGCTATGATTCAGGC AAAACCAACAAGTAATACGCTGAAAATGTTATTTATAATGAAGCTTAGGGGCGGGGTTTG TTTAATAAAACAAGGAGGGCTTCTGTTTGAATACTTCTTGTTTATAAAATCCCTTTATCT CGACTAAAATATTGGATGGGGGAAAAGCGTTTTATCATTGTAATCCGGGAGTGGAGTAGG GGTATGTTGACTACCTGTCAGATCGGCTCCTGTTAATGCTTTCGCTAAAGTTAGAGCTAT CTTATCTAATTTTGCACCATTTAGTTTGGTGTCAGTTAAGTCTGAGCCGAATAGAATTGC AGCGGTTAAGTTTACACCGGACATGTTAGCGCAAGTCAGGTCTGCGTGAGTCAGGTTTGC TTTAGTCATGTTTGAACCCATTAGATTTACAGCGTGTAGATTTGCACAACACAAATTTGC ACCGACTAAATTTACATTAGATAGATTTGTTTCACGGAAATCTGCATTAGAAGCATCTAT GTCTGACAAATCTTCTCCCTGGAAATCTTTATGAGCTAGGTTTACTCCGCGCAGGTTCAG AAAACCATCCTCGGTTATAAGTGAATCAGGCTGTTGTATATTATGTTTACTCATCAGTTT TAACATTCGACATACATTCCAAAATCTCTCACTATCAACTTTATCCGTTACAGTTTTTCC ATTTTTGTTCACTTCAATAGTGACCATGGGATCCGTATTTTCGGATGCTGCTCCACATGA CAGACATATAGTACACCCGTTGACATCCTCCAGAAATATTTTATTACCATCGAAGAAAGC ATCTTTATTTACATATAATAATGATGTGGTCAGTTTTCCAATTACCTCCCAAAAGCATCT TTCATTGCTTCTTCTTACTCCACCACAGGTAAAAAAATTGACAAACCATTCCAGTATACC GCGTGGTGAAGTTGCACTTTTCATTGCTTCTTTCGTACCGGTACCGGCCGCATGCAAATA TCTTAATATATTTTCTGGGGACGCGTTAGTTATTGGCATTTTGATTCCTTCTTATGGAAG TGAGTCGATTCCTTATAGGTGTGAGTCAAGTCACATTTATACAAGGAATAATAAAAAAAG ATATAAGGTGATTTTTGTATTTAGAGCTTTGGTTGAGTATGAGTAGGTGTCTGGCATCTG ACAAGAGGCGATGATATCTGCCATAACGGTGAAGCAGAAGTAATATCACCCGTGAATAAT AAGATTATCCTTGCTATTGACTTCCTTCATTTCCAGCATAGCTTACGCCTCATCATCATT GAATAAACAATTAAGTTTGTTGAGCGAAAATTTACTTAAAGAAAAAATAATAAGCTTTAA TATTTTTTGCAGCATTTCAACTTATAGCAGAATAAATGTGCGTAGATGGCGTAAAAACCT GATGAGCAGGAATACTTACACACTAAAAATGCTCCCGCAAACAGAGCAAAATGAGAAAGA GGAACGTTTGCCCTTTACATTTCCACCAAAGATTCTGGTTTTGTCTCTTGTAAAGGGCAT ACGTATCGCGTTTTATCTCATTAAGAAAGTATGTTGACGTATTAAATTATGCATAATGCT CTTTCAATTGCTTCACGTTTGAAATGAATAATTCAAAACCAGTGAGCGCCTCTTCTTCGG TACTGGTTTGCGGCAAGCGATAAAGCGCCACTAAAGCAGTATTGTCTGCATCAGCGCCGA TAGTGACGGCGCTGGCGTAGTTAAGACGTAAAAAATGCTGCAAAGTCAGAGTGTCGTCAG GCAGTGGCATAAAGGGACAGCACATTTCCAGTGTATGATCGGATTCATTAAAATAAACCT GTATCCCATCATCAATGATAAGCAGTGGCTCATCTTCTGGCGCATCCAGGCCTAACGCGT CATATAAACGATTTAATAGACTTTCCATATAGTTACCTCAAGACTCAAGATGTGATTAAT GAAGAAATACCTTTTACTGACTGCCAAATATTTTCATCCCCAACTCGTTTTTGATAGGAA AGATTGAGCACCTCTGGCGATAAATTTTTCATTACTTTGTTTCCCGCCCCGCCCGTATTT TGTTTCTGAATCTCCAGGTTACCGCTATTCAGTAATACTTTTTGGAAAATTTTCTGTCCA CCGCTATCCGGAAGACTACCAGGCGCACTTAACATATGGGTCTGATGGAAAGAAATGAGC TCTCGCTTGATTTCTGAATCCATCATCCCTGTACGATCTTTGCCGCTTTTACAATTCCAG GCGGGCACCGCGTCAATTTCATGGGCTAACATGGCAAGGCGTTGTGCGAGTTTATAGGGT TCGCCGCCATCTTTATGATGTTGGTTATTTTTCCAGATATCCTTAATCTGGCGCGCTAAT GTATTGACGACCTCATAATTATCCGGGTATTGCGCCAGCCATTCGCCAACCCAGCCACCT GGTCTGGCTTCAGGGCGTAAATCATTGCCTAATAACTGATGTAGCGCTTCGGCATTATAG CTATCTGATGCTTTAAGGCCAAAGCCGAGCTTGAGCGCCAGCTCATTAACACCCACATTA AATGCGGCGACGTCCGGTTTTATTTTTACCGTCTGTAGATCGCCATCTTTATTGCGGATT TTTAAATGAATCATTTTTCCCGGCTGGGTCAACGATTGCCATGCGCGCATTTGATCCTCG ACCATAGTTCCCTCTTTGCCGAAAATATTCGACGCGGTGAGTAACCCGACGGATACCAGT TTCAGGCTTACCGCTTCGCCCTCTAAGGCTCTGTTAAGCAACTCAGGTTTACTAAAAAGT GCCGCAGCTAATACTTCTTTGGCTTTGTTTTCAGCGCCGGCCTGACGCAGAAGCGGATCT TTTTCATGATAGGGGGAAAGCACACCATGACGTATCCCGCAAAAAAGCGTTTTATCTTTA CCGTCCTCATGCACACTCACCGTGGACATCCACAAATTATTGGCGTGATGAATATTCTTG GTATCCCAACTGCATACGCCCTTTCCCTCATAAGCACTGGGAAAGATATCTTTTGCGCCG ATTTTCATCTCTGCGGCAGGGAGCTGCGTGTTGGTATAGTGATGCCCGTTATGCGTGAGT GTATTTTTTATGGTTTGCCAGGGCTGGTTATTGAGCTGCTTGACCTGAGCATCTCTAAAC GCTACTGCCGCAAAGCGATGAGCTTCTTTTGCAGGTAAGCCATTTTGCTGCTGAGTGCGT GCTGCAATAAGTTCGATAAGATTTTTCTTCAATGCTTTTGCCGCAGCTTCTTCTTGTTTT GTTGCTGGCCGGTCCGCTTTAACTTTGGCTAACTCCATTTGGTTTGCCATTGACGTTAGA ACCGGGTCTTGTTTACCCAGAACGGTTGCCGCGACGGTAAGAAGATCGCGCTGTAAGTTA TAGAGGTTATGCAGCGAGTGGTTAGACGTCTTCTGATGCTGTAGATAATTCCCCCATGTC GCGCCAGGTTCTCGCAGGACAATAATTTCCGGGCGAGCGTCGGGCGCTTTAGCCGGCGCT TTGCCCTGGCCTGAGAGAATCTGCATTCCGTTGTATAAGGTTTTTTGTAGGCTTTTAAAA GCCTCCTGGGTTTTTAGTGAAGCTGAGTGATAGAAGCTCTGTATTTGCATAGCGTTTTTA ATATTCCTGAATAGGGGAGTGGGAACATTCAACAGGGTTAACAATCTTTTAAAAGGATGT GACTTTTATGCACCAGGAACTTTAAAAAAATGTCCTTTTTAATGAGGAAACGCTTCTGAT CAGGCGGGGAGGCATCCTGACGTCCATACGTAGTGGCGATCATGGGGGAGATCGGTACAT CAAATGTTCATAAAATCTACAAACTTCACAATTTAGGGCACAACTTTTATTGAAAACCCA CCTTCTTGATTCAGATCAAATTCACCGATTTACTCCTGCGTAAAGTAACGGCGTTACATC AAATGTTATACAGGTGTGTGTATGCCAGCAAAGCCCCGGACGAGTAAGACCGTGACGAAG AATATTCGTTTTTCCTATTCCATGCTTGAACAGATAGAATTCGCGTTGAAATCTGAAAAG ACGCGGAATTTTTCAGCATGGGTAAAAGAGGCCTGTCGGGAAAAGTTATGTAACACGGGA CATAAGCTGTAGTTATCGTCTTATGTAAGAGGGGGCGGCCATTTTGAAAAGAACAACGTG CTTATATACCTCCTGGGTCTTTGCCGCTTTTGTCTCTCTGCTGATATTTGTCTGGAGTGT CATAAACTATCCTCTCTATGAATCCATAATAATTATTGTCTTTTATATCTGGCTAATTCT GGTACCGCTTTATCTTATTGTGTATGAGTGGCTAATAGATTGTCATTAAATTTATGGCTG CGTACTTGAAAAGTGATATTTCATATCTGTGCGGTAAGTCATTGTCGTAATAATATTATT GGTCAGGCGACGGGCGAGCGTCTGCGCATTTTGCATCGTTTTATCTTCAAAATTTTGCAG TAAGCGTTGTGCTTCTTTCGGATGCGACGCATATAATCTCAGATAGCTCTGCTCCATCTT ATACTGTTGCTTAGCTGTTTGCTGTTCAAATGTTTTCCAGGCATGTTGCACATCTGGCGC AAACGTATTGTAGTCTTGCATAACCAGTGTTTGCAGCGTGCGGAATGTCCAGTAGGTAGA GTCGTTGCTCGCCCGATCGGTTCCTTTATCATCTCCGGGTTGATAATGACGCATCCCCTG GTAATAGGGGAGATAGACGCTAAGAGATGGCATTCCATAGGCGATGTATTCTACGTTGCC GATAGCCTGCGGTAATTTCGGTCTGACCTGTAAAATATGTGACTCCTGGGTACGAAAAAC GGATATAGGTCGCCATGGTTCTTGTGGATTATGACTGGCATAAGGGTCGTGCGACGTTCC CTGATAGTGATTGCGTAACGCGTTTTTTACTGCCGCCACGCTGATCTTCGTTATTGGCGT TAAAAAAACAGAAAATGTTTCCCCTTCGCTAACGACCGTATCCAGATGCGGATTAAACTG GTGTTGTAGCGTCCAGACGCGCGGATAATTATAGGTGGTATCGTTTTTGTTATCCTGCGA ATAGGCTTGATGAAAGTCGAATTCGCCGCGGGCCGGATCATATAATCCCTGCTTTTTCGC AAAGCTTACTAACGTTGGTGACGCCATATAATTCGCGTTATCATTCGGATCGTAATGGCG TAAACGTCCCTGATTGGCGGAAACGAAATAGCTATCTGCCGGAAGTCGTACTGCCAGCCA TTGATGTCCGCTTCCCGTCTCCAGATACCATATCTCTTTGCTATCAATAAACGCGACGCC GAAACCTTCGCCCGCGCCTTTTTGTTCAATAATATCTCCCAGTAATTTGGCGCCCTGACG CGCCGATTGCGCCACTGGCAGGATCACGGACTCAATGGCGTCTTCCGTGATTCCCGTTTT TGTCACGTAAGGATCGGCAGCCAGCGCCGCTCTGCCGTTGTAAATGGTTTCCGTTGCGCT CATTCCGACGCCCGCCGAATTGAAACCGGCTTCACCCATGGCGTTATCGTTAGTATCAAA GTCATGAATCGCCGTATAGCGCATCGCTGTCTCCGGAAGCGGCCAGCTAAAATTGTTGCG ATGTGCTTTATACTCGCCTTGTTGATGAAACGCGACGGGATGAATAACCTTATGCTTGGC GTTATTTGCCGAGCCATCCTCGTTGCGCGCGATAATAAAGGAGCCGTCAGCCGAAGCCTG ATTGCCTACCAAAAGGGTAGTACAGGCGATGACTTTACCCATACCCAGCAGCGTAACGGC GAAAGCAAGATACTTTTTCATAAAGGTTCCCACTGAATAACGCGTTATGGGATGAATTGA CCCTGGATTGGAAACCGAGAAAGTGATCGAGCCAGCAATATTCTTTACCGGCATCCTTTA TTTTCTTTTTATTGAGGTTGTATTGATAACCACAGCCCTGTGGCAGGGAAGGGGAACAGA ACCTGTACTGACCTTAGCTATCACCGCTATCAGGCAGACGAACCGAAAAGATATTATGTT CATCGGCATAGCGGTAAGATGCCGAGCCACCGTGCAATAGGGCAATCGCGTTAACTAACG ATAACCCCAGGCCGAAACCGGCAGTGTAGCGGGCATTATCTCCTCGCCAAAAACGCCGGA AAAGCTTATCCGCATCGGCGGTGGGGCTGCCCGGATTAGCGACCCGAATTTCTGCAACGT TATCATCATAAGCGCTTTCAATACGTATCACGGCGTTTTCATCAGAATAACGGATGGCAT TCGTCAGCAGGTTTGAGAGCACTCTTTGTAATAATATTTCGTCAGCCCATACCGTTCCCT GACATTGATTTATAAAACAGATGTGCTTCTCTTCGGCAAGGGGGCTAAGATAATCCAGCA TATTTTCGACCAGCGCATTGAGCGAAACAGGCTGTTTTTTTACCGCTATATTCTGGTGCT CCGCGCGTGCCAGAAAGAGAATATTTTCTGTCAGTCGCGACAGTCCCTCCAGCTCTTCAA TATTATCGACAAGGGCTTGTTGATACTCTTCGGCGCTGCGTTCCTGACTCAGCATAACCT GATTCTTCCCCAGTAAAATATTAACCGGCGTGCGCAGCTCATGCGCCAGATCGTCGGCAA ATTGGTTCAGGCGTTCAAAATCGTCGGAAAGCTTCTGGCGCATGGTATTTAGCGCTTGCC CAAGCGGCCTGAGCTCGACGGGTAACGCCTGTTCCGCCAGCGGCTGGCGAAGTGTGCCGC TATCTGTCGCCGCGGTGAGTCGGCTGAGCGACGTAATGGCCCGCAGCCCGTTTCTGATGA CTAATGGACTGAGCGCCGAACAGACGAGGATCGCGATAAGGCTAATCAGCAAACTGTTGC GGCGATATTGCGCCAGCATTTGCCGCCTTTCCGTCGCCAGCCTGGCAATAGTAAGGGTCA GCGGGTTATCGCCGCTTCTGGCGTTTACTCGTACCGCGGTCAGCTCCGTGCCTTGTACCG CCTGGCGAAATAAGGTTTCGCGGGTGATGTTTTTAGCCAGCGGAATCTCGTTAAAGCGTT GGTCGGGGATGCCGCTATGATTAATCGCAACATTATGGCCTGTTGCTGAGTGGATCAATA AGATATCCTGCTTCGTATCCACCATCCGATTGAAATAGAGCGGCAGATTTTCCGGCCTGG CGCCATCCAGTAACAGTTGCTGCATTTGCGCCGCCCGATTTATTAGCGTCATATCATCCC GATACGTTAATTCTTTGCTCAGCGCGTTATAGAGCGTCCAGCTAATGCCGGTACAGGCGA GGATAAGTATGGCGATAAAAGAAATTGTCAGGCGCAGCGTCATTGATAACTTAACCATTC TGCGACGTTTCCGCCTGTAATCGATAACCCATCCCCTGGACGGTCATAATGAGCTTCTTT TCAAATGGATCGTCTACTTTGGCGCGCAGCCGACGAATCGCGACATCAACGGTGTTGGTT TCACTATCAAAGTTAATTCCCCAAACTTCGCTGGCGATCGCGGTTCGGGGCACGATTTCC CCTGCCCGGGACGCCAGTAACCAGAGGAGCAGGAATTCTTTGCGGGTCAGGGAAATCGGT TTGCCATTTCGTAACACCGATTGCTTTGTGGCATCCATGTCCAGACCATTGATCGTCAGT CGGGTAAAGACCGGGACATGCTGTCTGAGTTGAGCTCTCACCCGGGCCAGCAGTTCGGCG AAGGAAAAAGGCTTAACAAGGTAATCATTAGCGCCCGCCTCAAGACCTTTGACGCGATCC TCAACCGAGTCGCGCGCCGTCAGGCAAATAACAGGGGGCTGATATGCAGTGCGCAACGCG CGTAAAACCTGCCATCCATCAAGCCCCGGCAGCATAATATCAAGAATAATCAATGAATAA TGTTCCTGAAGGGCTAGGTGTAATCCGTCTCGTCCATCACAGGCATAATCAACCACATAG CCTGCCTCCGTGAGTCCCTGACGTACCCACTCAATGGTTTTCTGGTTATCTTCAATCAAT AAAATCTTCATCAACGCAGTATGCCATAGGCTTGTTAGCGAATCCGTAAATCTCCAACAA GATGACATAATTGTCATGTCCGTGTAAGGTTAATCCTGGACGCGCCAGATATATTTTCCT GCATCAATACCGTAAAGGAGTGAAGCATGAAACGATATATACTGGCTACCGCGATAGCGT CTCTTGTTGCAGCCCCGGCAATGGCGCTGGCCGCTGGCAGCAATATTCTCAGCGTACATA TTCTCGATCAGCAAACAGGCAAACCAGCGCCCGGCGTGGAGGTGGTACTGGAGCAGAAAA AGGATAACGGATGGACGCAATTAAACACCGGGCATACCGACCAGGATGGACGAATTAAAG CACTGTGGCCCGAAAAAGCTGCCGCGCCGGGGGATTATCGCGTTATTTTTAAAACCGGCC AGTATTTTGAAAGTAAAAAACTGGACACGTTTTTCCCGGAGATTCCCGTCGAGTTTCATA TCAGCAAAACGAATGAGCACTATCATGTGCCGCTGTTATTAAGTCAGTATGGTTATTCAA CCTATCGCGGGAGCTAATTTAGAGCCTATCCTATTAGGGCTATTTTACTTGCCATTTTGG TCCTGGGCAGTGCTCGCCAAAACGCGTTAGCGTTTTGAACGCCGCTTGCGGCGGCCCGAA GGGCGAGCGTAGCGAGTCAAACCTCACGTACAACGTGTACGCTCCGGTTTTTGCGCGCTG TCCGTGTCCAAACAGGCTGCGCCAATAACGCCTGGTGGGACAGGCTCTTAGATTTTATTA ATCGCCGGGATTTATGGCGAGCAAACATCGCGGCGGGAATAAAAATCTTCAGCGTATCGA CTCTCCTCCCACAAGCGGTGGTTATCCCGCTTGTGGGTATGAGTGACGGTTAAACAGGCG CTTCCATCTCAAGTCTGACCGGATGAAAACGGCGTTTGAAATAAATCAGGCCATGCCCCT CCTGGCTAAGAATAATATTTTTGATCGCCACCAGATACACCAGATGCGTGCCAATGGTTT GTACCTCGCTGATCTCGCCTTCAAGACTGGCCAGCGCGCCGTTAAGTACCGGCTGGCCCA GCGGCCCGTTTTGCCAACATGGCTGGTGAAAACGCTCCTCCATCGCCATCCCCGTCATAC CGGCAAAGTGGCGCGCCATCAGCTCCTGCTCATGGTTAAGTACATTAATGCACAGCCTGC CGTTGCCCTGAAAAACGGGGTTCATGGCGCTATTGGCATTAATACATACCATCACGGAGG GCGGCGTATCAGTGACTGAGCAAACCGCTGTTGCGGTGATACCGCAGCGTCCGGCGTGAC CCGCCGTGGTTACGATGTTGACCGCTGCCGCCAGACTTGCCATCGCATCGCGAAAACGCA GACGTTGTTCATCTACTTGCATGAGAACCTCCTGCCGCGTTATTTCAGCAGCTTATCCAG TTGATTGATGTCGTCGTTATTGTGCAAATGCGAAACCGTCCAGCCATTCTGATCGTATTC GGAGAGGCAGCGATCGACCATTGCCATCATCTTATCCATATTGCCGGAGCTCTGGGCCTG ACGCAGACACTGCAGACGAATTTCATCCTGGCTGCCCGAGTAGTTAATCTCGTACAGCTC ATGGCGACCGCCAAACTCGCTGCCGATGGCATCCCACATCAATTTAAGAATTTTGATACG TTCAACATGGTCCATTCCGTTAGAGCCGCGTACGTATTTCGCCAGGTACTGGTCGATTTG CGGATTATTCAGATCGCGGGCGCTGGAAGGCAGGTAAATCAGGCCGCTGGTAACGTTACG TTCAATAATATTTTTAATTTTCGCGTAGGCCATTGGGGCCATCACACGATAGGTTTGCAG CGCGGCGTGGTCCGGTAGCCAGGCGCCGTTTACCCACGGGGTTGCTTCAGAACACATAGA ATCGCTCAATGCCCAGAACATATTGCGCCAGGCCACGACTTCGCCGAGATCGGCCTGCAC GCCCCGGAACTCTACGGTACCCGTACATTCGAGCGATTTTTTCAGCAGCGCGGTAATGAA ATCAAGTTTTACCGCCAGACGAACACAGGCTTGCAGTGGATACATACGGGCAAAGCCGCC TTCCATCGTCCAGCGACGACAACGATCGAAATCACGGTAAATTAATACGTTTTCCCACGG GATCAGCACCTTGTCCATCACCAGAATGGCATCGTTTTCATCAAAACGGCTGGAGAGGGG ATAATCAAACGGCGAGCCCGTCGCGCCCGCGACCATTTCATACGAGGCGCGCGAAATAAG TTTTACGCCTTCGGCATCCATTGGCGCGACAAACATCAGAGCAAAATCCGGGTTTTCGCC CATCACCTGGGCTGAGCCGAAACCAATCATGTTGTAGTGAGTCAGGGCGGAGTTAGTGGC GACAACTTTCGCCCCGCTGACAATAATCCCGGCGTCCGTCTCTTTCTCCAGCTTGATATA GACGTCTTTCACTTCGTCGGCAGGTTTGTGGCGGTCAATGGGCGGGTTGACGATTGCATG GTTAAAGTACAGGCCGGTCTCCTGAATACGGGTGTACCAGTTACGGGCGTTCTGCTCAAA CTGGCCGTAGAAGGCTGGGTTAGCGCCCAGAGCGCAGCCAAAGGCGGCTTTGTAATCCGG TGTGCGTCCCATCCAGCCGTAACTCAGGCGTGACCACTCGGCGATAGCATCACGCTGTTG GCGCAGATCGTCTGCGCTTTTCGCCACGCGGAAAAATTTATGCGTATAACCGCCGCTGCC GGTATCGGTATTCCAGCACAGGGTGTAAGCGGGAGGGGATTCCCGTGTCGGCGGCGTGGG AAGGTAAGAATACTATGCTTCCGCTTCGCTATCAGGATGCTGGCGCCCCAGAGCAATAAG ATCGTCCAGCAGCAGCATCAATTGCTGTGTTTTTTCGGGCGTGAAATCGGCCTCAATTTT TCGATAAGCCTCTTCTACCTCGCTCCGGGCACGGGCGTACAACGTTTGTCCCTGCTCCGT CAACATGACATATAACTTACGCTGATCGTTAACCGGCTTGAGTCGCAACACCAGTCCGTC TCGCTCCATGCGCGTCAATATTCCGGTCAGACTTGGACGCAAAATACAGGTACGAAAGGC CAGCTCGTGAAAATCCATAGAGGGGCTATCGGCCAGGATTCGCACAATGCGCCATTGCTG GTCGGTCAGATTGTGGCTTTTAACGATGGGGCGGAAATAGGTCATTGCCGCTTCGCGCGC CTGAAGCAAGGCGATGGTTAATGAATCATGCATAAGCGTTTCTCTTTTGCAGAATTATTA ATACCTGAATAATCGTGTTTACCGATGTGAGCTATGACATCTGTTTTATGTCCAAAGTTT AATAGAAACAAGGGGTTTTATTTAACTATTTGATATATATGTATTTAATAATAAATTTGT GAAAATATTGTTAATCACATCATAAATACTTTACTTAAGCTTGCTAAATGTACAGCGAAA GCATAAATCTAATCATTAATATGTTAATGAAATCACAGCCCGTTAAATCGGCCTGAGGAG TTTATGTATGAAGGGTACTGTTTTCGCCGTTGCGTTAAACCATCGCAGCCAGCTTGATGC CTGGCAAGAGGCTTTCTCTCAGCCTCCCTATAATGCGCCGCCTAAAACCGCAGTGTGGTT CATCAAGCCGCGTAATACGGTGATTCGTCACGGCGAACCCATTCCTTATCCGCAGGGAGA AAAGGTACTGAGCGGCGCGACAGTGGCGCTCATTGTGGGGAAAACCGCCAGCCGGATACG CCCTGAAGCGGCGGCGGACTATATCGCCGGGTATGCGCTGGCTAACGAGGTCAGCCTGCC GGAAGAGAGCTTTTATCGCCCGGCGATTAAAGCGAAATGTCGCGATGGCTTTTGCCCGCT GGGTGAAATGGCGCCGCTGAGTGATGTGGATAATCTCACCATTATCACTGAAATCAACGG ACGAGAAGCGGACCACTGGAATACTGCCGATTTACAGCGTAGCGCCGCACAACTGCTTAG CGCGTTAAGTGAGTTCGCTACACTTAACCCTGGCGATGCGATCTTACTTGGTACGCCGCA GAATCGCGTTGCGCTGCGTCCCGGCGATCGGGTGCGTATTCTGGCGAAAGGTTTACCCGC GCTGGAAAATCCGGTTGTCGCAGAAGATGAATTCGCCCGCCACCAGACGTTTACGTGGCC GCTGTCAGCGACGGGAACGTTATTTGCGCTGGGGTTGAACTACGCCGATCACGCCAGCGA GCTGGCATTTACGCCGCCGAAAGAGCCGCTGGTATTTATCAAAGCGCCAAACACCTTTAC CGAACATCACCAAACGTCGGTGCGCCCGAACAACGTCGAATATATGCACTACGAAGCCGA GCTGGTCGTGGTGATTGGCAAAACGGCGCGTAAGGTGAGCGAAGCCGAAGCCATGGAGTA TGTGGCCGGTTACACCGTCTGTAACGACTACGCGATCCGCGACTATCTGGAAAACTACTA CCGTCCGAATCTGCGGGTAAAAAGCCGCGACGGCCTGACGCCGATAGGCCCGTGGATTGT GGATAAAGAGGCGGTTTCTGATCCGCACAACCTGACGTTACGCACCTTTGTCAACGGTGA GCTGCGGCAGGAAGGGACGACCGCCGATCTGATCTTCAGCATCCCGTTCCTGATTTCTTA TCTGAGCGAATTTATGACGTTGCAACCGGGCGACATGATTGCCACCGGTACGCCGAAAGG GCTGTCCGATGTGGTGCCGGGGGATGAAGTTGTCGTTGAAGTAGAAGGCGTGGGTCGCCT GGTTAACCGAATCGTCAGTGAGGAGAGCGCAAAATGAAGAAAATAAATCATTGGATTAAC GGCAAAAACGTTGCAGGTAACGACTACTTCCAGACCACTAACCCGGCGACCGGTGATGTG CTGGCGGAAGTAGCCTCCGGCGGTGAAGCAGAAGTGAACCAGGCTGTCGCGGCGGCAAAA GAGGCGTTCCCGAAATGGGCCAACCTGCCGATGAAAGAGCGCGCGCGCCTGATGCGCCGC CTTGGCGACCTGATTGACCAGCATGTGCCGGAAATCGCGGCGATGGAAACCGCCGACACC GGCCTGCCTATTCACCAGACTAAAACGTGCTGATCCCGCGCGCCTCGCATAACTTCGAAT TCTTCGCCGAAGTGTGCCAGCAGATGAACGGCAAGACCTATCCGGTTGACGATAAAATGC TCAATTATACGCTGGTGCAGCCCGTCGGCGTCTGCGCGCTGGTGTCGCCGTGGAACGTGC CGTTTATGACCGCGACTTGGAAAGTTGCGCCGTGCCTGGCGCTGGGTAACACCGCGGTGC TCAAAATGTCCGAGCTGTCGCCGCTGACTGCCGACAGGCTGGGCGAGCTGGCACTGGAGG CAGGAATTCCGGCAGGCGTGCTGAACGTGGTGCAGGGCTACGGCGCGACGGCGGGCGATG CGCTGGTACGCCACCATGACGTGCGTGCGGTGTCGTTTACCGGCGGTACCGCCACCGGTC GCAATATCATGAAAAATGCCGGGCTGAAAAAATACTCGATGGAGCTGGGCGGCAAATCGC CGGTGCTGATTTTTGAAGACGCCGACATTGAGCGCGCGCTGGACGCCGCGCTGTTCACCA TCTTCTCGATCAACGGCGAACGCTGCACCGCTGGGTCGCGCATCTTTATCCAGCAGAGCA TTTACCCTGAGTTCGTGAAGCGCTTTGCCGAACGCGCGAATCGCCTGCGTGTCGGCGATC CGACCGACCCGAACACCCAGGTCGGCGCGCTGATTAGCCAACAGCACTGGGAGAAAGTCT CCGGTTATATCCGCCTCGGCATTGAAGAGGGGGCAACGCTGCTGGCGGGCGGTGCGGAAA AACCCACTGACCTGCCTGCGCATCTGAAAGGCGGTAACTTCCTGCGCCCAACCGTGCTGG CCGATGTCGACAACCGTATGCGCGTTGCGCAGGAAGAGATCTTTGGGCCGGTCGCCTGCC TGCTGCCATTCAAAGACGAAGCGGAAGGGTTACGTTTGGCGAACGATGTGGAATACGGTC TGGCCTCTTATATCTGGACCCAGGACGTGAGCAAAGTGTTGCGCCTGGCGCGTGGGATTG AAGCCGGCATGGTCTTCGTCAACACCCAGAACGTCCGCGACCTGCGCCAGCCGTTCGGCG GCGTGAAAGCCTCCGGTACCGGGCGCGAAGGCGGCGAATATAGCTTCGAAGTGTTTGCGG AAATGAAAAACGTCTGCATCTCAATGGGCGACCATCCTATCCCAAAATGGGGAGTTTGAT ATGGGCAAGTTAGCGTTAGCAGCAAAAATTACCCACGTGCCGTCGATGTATCTTTCTGAA CTGCCAGGAAAAAATCACGGTTGTCGTCAGGCAGCCATTGATGGGCATATTGAAATTGGC AAGCGTTGCCGCGAAATGGGCGTTGACACCATTATCGTATTCGACACCCACTGGCTGGTG AATAGCGCTTACCACATTAATTGTGCCGACCATTTCCAGGGCGTCTATACCAGCAACGAA TTGCCGCACTTTATTCGCGACATGACCTATGACTATGACGGTAATCCGGCGCTCGGCCAT CTGATCGCCGACGAGGCGGTCAAACTGGGCGTGCGCGCCAAAGCGCACAACATCCCGAGC CTGAAGCTGGAGTATGGCACGCTGGTGCCGATGCGCTACATGAACAGCGACAAGCACTTC AAAGTGGTCTCCATCTCGGCGTTCTGCACTGTGCATGATTTTGCCGACAGCCGCAAACTG GGCGAAGCCATTCTCAAGGCGATTGAGAAATATGACGGTACCGTAGCGGTATTCGCCAGT GGTTCTCTGTCGCACCGTTTTATTGACGACCAACGGGCGGAAGAGGGGATGAACAGCTAC ACCCGCGAGTTCGATCATCAAATGGACGAGCGCGTGGTCAAGCTGTGGCGCGAAGGCAAA TTCAAGGAGTTTTGCACCATGTTGCCGGAGTACGCCGACTACTGCTACGGCGAAGGCAAC ATGCACGACACGGTCATGCTACTGGGAATGCTGGGGTGGGACAAATACGACGGCAAGGTG GAGTTCATCACCGACCTGTTCGCCAGCTCCGGTACCGGCCAGGTAAACGCTGTTTTCCCG CTGCCTGCGTAAGGGGGGTTTATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGC GAGCAGGCTGATTTACCAAGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGG ATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCT GACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGC CTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCC GACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACG CTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCACACTCTTTCGCCCGGT GGCGCTGCGCTGACCGGGCCTACAAAAAAACGATGCACGAAGCAGTACCGAACCGTAGGC CGGGTAAGACGCACCCGCGTCGCCACCCGGCGCAGCAGCACCGAATGAGGTAACAGGAAG CAACTATGCTCGATAAACAGACCCATACCCTGATCGCTCAGCGACTTAATCAGGCTGAAA AACAGCGTGAACAGATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAAGATG CCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATTGCCGAAGGGCGCACGCTCAAAG GCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGG ATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGAGATATCCCCACCGACC GTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCTGCGCG GCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGG AACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGT TCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCCCATCA AACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGTGATCG AAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGG CGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCT CGTTCACCCGCCCGGTGCCGGCGCGCAAGGGCGACACCTTCCATGTCGATTACGGCAACA TGGGCGCGATCAGTTGCCGGTTTGTGTAAGGAAAAAACGATGAAAAATGCTTTCAAAGAC GCGTTAAAAGCGGGGCGCCCGCAAATCGGTTTGTGGCTGGGGCTTGCCAACAGTTACAGC GCTGAACTGTTAGCGGGCGCCGGCTTCGACTGGCTACTGATTGACGGTGAACACGCGCCA AACAACGTGCAGACGGTGTTGACCCAGTTGCAGGCGATTGCGCCTTATCCCAGCCAGCCG GTGGTGCGTCCGTCATGGAACGATCCGGTACAGATTAAGCAACTGCTCGACGTCGGCGCG CAAACGCTGCTGATACCGATGGTGCAGAATGCCGATGAAGCGCGAAACGCCGTGGCGGCT ACGCGTTATCCGCCTGCCGGTATTCGCGGCGTGGGCAGCGCGCTGGCGCGGGCATCGCGC TGGAATCGCATTCCGGACTATCTCCACCAGGCCAACGACGCCATGTGCGTACTGGTGCAG ATTGAAACGCGTGAGGCGATGAGCAATCTGGCGTCAATTCTCGACGTGGATGGCATTGAC GGCGTGTTTATTGGCCCGGCGGATCTCAGCGCCGATATGGGCTTTGCCGGCAATCCGCAG CACCCGGAAGTGCAGGCGGCGATTGAGAACGCCATCGTGCAGATACGCGCGGCGGGGAAA GCGCCGGGGATTCTGATGGCCAATGAAGCACTGGCGAAACGTTATCTGGAACTGGGGGCG CTATTTGTCGCCGTCGGCGTTGACACCACGCTGCTGGCGCGCGGAGCGGAGGCGCTGGCG GCGCGCTTTGGCGCAGAAAAAAAACTGTCCGGTGCGTCCGGCGTCTATTAAGCCTGGGCC GGTAAGCGCAGCGCTACCGGGCAACCGTAGTACCCTACAAAATTCCCATCAGAGGAAAAA AAATGAGCGACACATCATCTGCACTTCCGGAAAGCCCCGAGTCTGTCGGTTCGCACAACG CGCTCAGCACGGGTCAACAAACCGTCATAAATAAACTGTTCCGCCGACTGATCGTATTTT TATTCGTGTTGTTTATCTTCTCGTTTTTAGACCGTATCAACATCGGTTTTGCCGGGTTGA CGATGGGGCAGGATCTGGGGTTAAGCGCCACCATGTTTGGTCTTGCCACGACGCTGTTTT ACGCCACCTACGTCATTTTCGGCATTCCCAGCAACGTGATGTTGAGCATCGTCGGCGCCC GCCGCTGGATTGCGACCATTATGGTGCTATGGGGCATTGCATCTACCGCCACGATGTTCG CGGTGGGACCGAAAAGCCTGTATGTGCTGCGAATGCTGGTGGGCATTACCGAAGCGGGCT TTTTGCCAGGAATATTGCTCTATTTAACCTACTGGTTCCCGGCATTTTTCCGCGCCCGCG CCAACGCATTATTTATGATTGCCATGCCGGCCACTACCGCGTTGGGGTCAATTGTCTCCG GCTATATTTTATCGCTGGACGGCATATTCAATCTGCATGGATGGCAGTGGTTATTCCTGT TGGAAGGATTTCCGTCAGTTTTGTTAGGCATTATGGTCTGGTTTTACCTGGATGATACCC CGGCAAAAGCCAAATGGCTGACGGCAGAGGATAAAAAATGTTTGCAGGAGATGATGGATA ATGATCGCCTGACGCTGGTTCAGCCTGAGGGGGCCATCAGCCATAACGCCATGCAGCAGC GTAGCCTGTGGCGCGAAGTATTCACGCCAATTGTACTGATGTATACGCTGGCCTATTTTT GCCTTACCAATACGCTTAGCGCCATTAGTATCTGGACGCCGCAAATCCTGAAAAGTTTTA ATGAAGGCAGCAGCAATATCACCATCGGCCTGCTGGCGGCGATCCCGCAGATTTGTACTG TTCTGGGCATGATTTACTGGAGCCGCCATTCGGACAAACATCAGGAGCGTAAACACCACA CTGCGTTACCGTTCCTGTTTGCCGCCGCGGGCTGGCTGCTGGCGTCGGCGACCGACCGTA ACCTGATCCAGCTCCTGGGGATCGTGATGGCATCCACGGGTTCCTTTAGCGCGATGGCGA TCTTCTGGACCACGCCGGATCAGTCGATCAGTTTACGCGCCAGGGCGATAGGCATTGCGG TCATCAATGCCACCGGCAATATTGGCTCCGCGCTCAGCCCGGTTATGATTGGCTGGCTAA AAGATATCACTGGTAGCTTCAATAGCGGACTCTGGTTTGTCGCTTCTCTGTTAGTCGTCG GCGCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCGCGCGCCACCCCTTGAG GAGAAACTATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGACGAAA GCATGGGCAGTAACGATGTGCATTATCAGTCGTTTGCTCGTATGGCGGATTTCTTTGGTC GTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTCTTGATACCGGGC AGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTGCTAA CGCCGCCCTCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTTCTGA CGGTACGCGAAGAGCTGGTTTGGCCGCTGCTGGAAGTGCTTTATCCCGGCACCAGAGAGG CCTTCGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACGAGCTGGCGGCGC TCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGCGAAC ATACCTTGGTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAGCTGG ACGATCATGCCGCAACCGGGATGCGCGGTGAACTGAAACTTTTTCAGCGCTTTACCCTGT TAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCTGTGAGTTGCATA TTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAACGCC TGATTTTTGATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAATGCTG TCAACGAGATCGCCTGGCAATTAGGTTTTAAAGATCCGGCTTATTTCGCCCGTTTCTTTA ATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTCCTTCTTTTCTCA ACTAAGAAGAGTAAAAACATGATGAAAAAAAGCGTCGCTATGCTGGCGGTTTGTATGCTG GCGCAAAGCCACCTTGCCATTGCTGCCGGTGCTCCTGCGCCTCAAGAGATCAACATTGTT TTACTGGGCACCAAAGGCGGGCCTTCTTTGCTCAATACAGCCAGACTACCGCAAGCGACG GCGCTCACTATCGGCGATAAGATATGGCTGATAGATGCCGGCTACGGCGCCAGTCTGCAA CTGGTGAAAAATGGCATTCCACTGCGCAACATCAATACTATTTTGCTCACCCATCTGCAC AGCGACCACATACTGGATTATCCTTCCTTGCTGATGAATGCCTGGGCAAGTGGCCTGAAA GACCATACCATACAGGTTTATGGCCCGCCGGGAACCCAGGCGATGACGAAGGCTAGCTGG AAGGTCTTTGACAGGGATATCACGTTACGCATGGAAGAAGAGGGGAAACCCGATCCGCGC AACCTGGTTAAGGCGACCGATATCGGCCAGGGCGTCATCTATAAAGATGAACTGGTCACA ATAAGCGCGCTGAAAGTGCCTCATTCCCCTTTCCCGGACGGTGAAGCGTTTGCTTACCGT TTTGATACTCAGGGTAAGCGAATCGTCTTCTCTGGCGATACGTCCTGGTTTCCTCCGCTT GCAACGTTTGCCCAGGGGGCGGATATCCTGGTACATGAGGCGGTACATGTCCCTTCGGTA GCAAAACTGGCTAATAGTATTGGCAACGGAAAAACGCTGGCTGAAGCGATTGCGTCGCAT CACACCACGATTGAAGATGTCGGTAAGATTGCTCGCGAGGCCCACGTGAAAAAACTGGTG TTAAGTCATCTGGTGCCTGCGACGGTTGCGGATGACGTCTGGCAACAGGAAGCCATGAAA AATTACCCGGGCCCTGTCATTGTCGGTCATGACAATATGACGATAAGCGTACCGTAAGCA TCAGGGCAGGGGTAAACCAACGGGCTGACATCATGTCAGCCCGTTATGCTTTTGGCGATC AGCATGACGCGCAGAGCTTTTGTCTAAAACATTATTTTTTCTAAACACTACTTGCTGATT TTTATGCACAATAAAGGTAAGATGATTGCTCTGGTGAAATATCACTAAATAAGAATGTCA CGGATGGAATTTATACAGTGTTAAAAGCAATGCGTTTCTTTGTCTGCCGGCCATCAGTAA TATCCTCTGTACCGGCTCCTCGTTGCCAAAGTGAAGGTTAGATTAAACGAATCAAAAAAT ATCCGAACTGTACAATTTTTATATCAAACATATTTAACTGCAAAATACTGCAAACGTGCG CGAATACACTTAATCAGTAGTATGGCTAATGCATACTTTATTTCCTAAACTTTCTTATTA TCTATTTGAATATTTCTGGTTAAACCAAATGGACAAACGGATACCAGACACTCGAAAGGA TAACTGCAAGCTTCTGGTTTAGGATTGCAGTTACCAGGACAGTGGCTATTTTCTTTAAGC GATTTCCATAGAACAGGATTAAACCTGGTAACGTTGTAAACAGTAACGGGATAAAGTTTA TCGTTTATTAAGACCCCCTTATTAAAGGGGATGATAATGCTACCTGGAGGCATGTAAACA TCTGCTTGATACCATAAGGTCAATCTAAGATTTTTTAGGCTATGTATGCATGAGAACGAC ACTCCGGTAGAGGGACTTATAACTGTATCAACGACCTTCCATTCCATTACAGAAACCTTT TAAGTGAAATAGTCAATGGTGTAAATTACATTTTCCGCAAGCCTATTCAGGATAGATGAA AATCTGAGAAACATAACTCGTTGAAAACGATCGTTTTTTATTGACCACTCTATTTATATT GATTTTTTAATAAGTTATTTATTTTATGCTCTTATTTTGTTTACATTCTATTACATTTTT GTATTTTATACGTGGTGTAAATATTGGGCGGTAGTGGATGTTATAACGCTCAATTATTAA ACTGTAAGTGACTGTTGTATTTCTTATTTATAAATACCGCAACCTGTAAGCGCAGCGGTA CATTTTACCCGGCATTGACAGGGAGAAGATACGTATCAACCAGAGAGTACAAAACAGTGA AAGAATATATTCTTCAGGCAATAAATGATCGCTAACGTGTAAAAATAACCGACGAATCTA AAAAATGTGAGCGTGTGGCTGGTCTTTATTTAAACGATGATCTTCGCAATGGCGCATTAA TGGCTGACATTGGCGGTTCGTTGATCGGCTTGTGCGCGGTGAAAGGCTATATTTCTTCCG TTGCGGGAAGTATGTCAGAGGCATTCTGGTATTATACCGGGTGTATGTAAATCCGGGGTG GGCAGAAAGCCCACCCTCGGTTTATTGCCTTTATCGTGGATTAGGGATGCGAGATAAAGC GAGAAAGGCGTTGCAGCAGTAACCGGTTTTCTTCGCGCAGCCGTGAATTCTCTTCCAGCA GCGTTAACGCGACCGCGATCCCTGGCCAGTCGAGCGCCAGCTCCTCGCGTAAGCGTAGCG CGCGTTGTACCACGCTCGCTGCGCGATCGTCGAATTGCCAGTCGGCGTTATCGTCTTCGT AAGGCTCAATTACGCCAAGTCCGACGATTTCGTTTAGCTCCTCTTCCGTCACGCCGGTGT GCAAACAAAATTCGGTGATGGTAAAGGTGACAGTGATGTTAGCCATTATGCTTTCCCCCA TTGCTGGCGTGGGTCAAAGGACGACTGCGCGTCCGCCAGTTGTTGCCACAGGGCAGCTGT TTTCTCGTCAGGTTTCGGCGGCATAACGATTTTGATGATGGCATAGAGATCGCCAGTGTG CTTTTTACTGGCTAATCCTTTTCCTTTGATACGCAGCCGCTGACCTGCCTGGCTGCCGGG GGGAATGGTCAGCAAAATACGCTCTTTAAGCGTTGGCACAGACACCTTAGCGCCGAGCGC CGCCTCCCATGGGGCAAGCGGAAGGACGACTTCCAGATCCTGATTGACGATATCAAAGAG CGGATGCGGGGCAATATGGATAACGAGCCATAAATCGCCATTAGGTCCGCCGTTTTCCCC CGGCGTGCCCTGGCCTTTCAGTCTGATTCGTTGCCCGTTGCTGACGCCAGCCGGGATTTT CACATTCAATGTTTTGGGAATTTCCCGCTCCACCAGGCCGAACGCGTTATAAACGGGGAC GGAATAGCTAATCGTACGCTGGTGCTCTTCCAGCGTTTCTTCCAGGAATACCGCCACTTC AATTTCGATATCATGACCGCGTGCGGCGTGGCGGTGGTGCGAATGACGACCGTGCTGACC AAAAATAGACGAGAAAATATCATCAAAATCTTCGGCGTTATACGGCTGGCCTTCGTGTTG CTGGAACTGGCGATTAAATTGTGGATCGTTACGGTGTTGCCATAACTGGTCATACTCGGC GCGCCGTTGCTCATCACTCAGCACTTCCCATGCTTCAGCAACCTCTTTGAAACGGGCTTC GGCATCGGGTTCTTTGCTGACATCTGGATGGTACTTGCGGGCCAGTCGGCGATAGGCGGT CTTAATCGTCTTGAGATCGTCCGTCGGTTTCACGCCCATAATGGCGTAATAATCCTTAAG TTCCATAGCATCATCTCGCTAAATCAATACATACAGAAGGGACCCCAAAAAGGTTTCTCC ACTAAGTGTAGGGTAAACCTGAAAAGTGCGTATGAAAACACCAGTTATATCATTAGTAAG AATAAATTACGTTGTTCGACTATCAGAAGGTTGCGCAGCGCGCCGACATAACTTTACAGG GGAAAGGTTGCCAAAACCGCGCCAGTGGCTAAGATAACTCGCGTTAAACAGTGAGGGCGC AATGGCGAAACAACAACGGATGGGCTGGTGGTTTCTTTGCCTTGCATGTGTCGTGGTAAT GGTTTGTACCGCGCAACGCATGGCGGGCCTGCACGCCTTGCAGATGCAGGCGACGGCCTC TGCTGCGGTGGTCAGCGCTCCCTCCTCGACAGATGACGGCTCGCCGGTCACTCCCTGCGA ATTAAGCGCCAAGTCGCTGCTGGCGGCGCCTCCAGTACTCTTTGAAGGTGCTATCCTTGC GCTTTATCTACTGCTTTCCTTACTGGCGCCTGTCCGGGTCATGCGCCTGCCGTTTTCGCC TCCACGGGCTATTTCGCCGCCCACATTACGGGTACATCTACGATTTTGTGTCTTCCGTGA ATGACAGACCGGTTATTACTAACGGTTAATTACTCATTCACGGAGAAAAAATATGATGAT TTTATTCAGGCGGATACTGTTCTGCCTGTTATGGCTTTGGCTGCCCGTCTCCTGGGCGGC GGAAAGCGGCTGGCTGCGTTCGCCCGATAACGACCATGCCAGCATACGGCTACGTGCCGA TACGTCCGCTAACAGTGAGACCCGGCTGTTGCTGGATGTCAAACTGGAAAACGGCTGGAA AACCTACTGGCGCGCGCCGGGGGAAGGGGGCGTGGCACCCTCTATCGCCTGGAAAGGCGA CATGCCTGAGGTAAGCTGGTTCTGGCCAACCCCCTCGCGCTTTGATGTGGCGAATATCAC CACCCAGGGATATCACGACGAGGTGACCTTTCCGATGATCGTGCGCGGTACGCCGCCGGC GACCTTGCGCGGTGTGTTGACGTTATCAACCTGCAGCAATGTTTGTCTGTTGACCGATTA CCCCTTTTCCGTGACGCCCACTGTGCAGAATGCCGATTTTGCCCATGACTATGCGCGGGC GATGGGTAAAGTTCCGCTCCGCAGTGGGCTAACGGACTCGCTTGACGTTGGCTATCGCCC GGGAGAACTGGTGGTCACTGCTACGCGAGCGGCGGGCTGGTCATCGCCCGGGCTCTATCT TGACACCATAGATGACGTCGATTTTGCGAAGCCTCGCCTGCGCGTAGAGGGCGACAGGTT ACAGGCGACGGTGCCGGTGACGGACAGTTGGGGCGAAAAGGCGCCCGATTTGCGCGACAA ATCGCTGACCCTCGTGTTAGCCGATGGCGCTATCGCCCAGGAGAGCACGCAAACCATTGG CGCTGCGCCAGCGCAAACGCCGGACAATGCGGCGCTACCTTTCTGGCAAGTTGTAATGAT GGCGCTAATCGGCGGACTGATTCTTAATTTAATGCCCTGCGTACTGCCTGTTCTGGGCAT GAAACTTGGCTCTATTTTATTGGTAGAGGAAAAAAGCCGCTCTCACATCAGGCGACAATT TTTGGCTTCGGTCGCCGGTATCATTGCGTCATTTATGGCGCTGGCGGCGTTTATGACCCT CCTTCGCCTGTCAAACCATGCGCTGGCCTGGGGAGTCCAGTTCCAGAATGCATGGTTTAT TGGTTTTATGGCGCTGGTGATGTTGTTGTTTAGCGCCAGCCTGTTCGGGCTTTTTGAGTT CAGGCTTCCCTCATCTATGACCACGAAACTGGCCACTTACGGCGGTAACGGTATGTCGGG ACATTTCTGGCAGGGGGCGTTCGCCACGCTGCTGGCGACGCCTTGTAGCGCGCCGTTTCT GGGCACGGCGGTCGCGGTGGCGCTCACGGCGTCGCTGCCGACGCTGTGGGGGCTGTTCCT TGCGCTTGGCCTGGGAATGAGCGCGCCGTGGCTACTGGTCGCGATACGACCAGGGCTTGC GCTACGTTTACCGCGCCCCGGGCGTTGGATGAATGTCCTGCGCAGGATCCTCGGTCTGAT GATGCTGGGGTCGGCTATCTGGCTGGCGACGTTACTCCTGCCGCATTTCGGCTTCACTGC GTCAAAGAGCGCGCAAGACACGGTTCAGTGGCAACCGTTGAGTGAACAGGCAATCCAGTC GGCGCTGGCGCAGCATAAGCGGGTATTTGTCGATGTCACTGCGGACTGGTGTATTACCTG TAAAGTGAATAAATACAACGTCCTGCAAAAAGAGGATGTGCAGGCCGCCTTGCAACAGCC GGATGTTGTGGCGCTGCGGGGAGACTGGACGCTGCCGTCCGATGCCATTACAGATTTTCT GAAAACGCGCGGCCAGGTCGCCGTGCCGTTTAATCAGGTATATGGCCCCGGTTTGCCGGA AGGGGAGGCACTGCCCACTTTGCTGACCCGCGATGCGGTATTACAAACGTTGAAAAAAGC GAAAGGAATAACCCAATGAAATACATGATTGTTTTACTGCTGGCGCTGTTTTCGACGCTG AGCATCGCGCAAGAAACCGCTCCTTTTACGCCGGATCAGGAAAAGCAGATTAAAAATCTG ATCCATGCGGCGTTGTTTAACGATCCTGCCAGCCCGCGGATAGGCGCTAAACACCCTAAG CTGACGCTGGTGAACTTTACGGATTACAACTGCCCGTACTGCAAACAGCTCGATCCGATG CTGGAAAAGATTGTGCAGAAATATCCTGACGTTGCGGTCATTATTAAACCGCTGCCATTC AAAGGAGAGAGTTCCATACTGGCGGCGCGTATTGCGCTGACCACCTGGCGCGATCATCCG CAACAGTTCCTCGCGCTACATGAAAAACTTATGCAAAAGCGCGGTTACCATACGGATGAC AGTATTAAACAGGCCCAGCAGAAAGCAGGGGCGACGCCAGTGACGCTGGATGAAAAAAGC ATGGAAACGATACGCACTAATTTGCAGTTGGCAAGACTGGTCGACGTGCAAGGAACGCCA GCGACGATCATTGGCGACGAGCTGATTCCGGGCGCAGTGCCCTGGGATACGCTGGAAGCG GTGGTGAAAGAAAAACTGGCGGCTGCCAATGGCGGGTAAACTGCGGCGTTGGCTGCGTGA AGCCGCGGTTTTTCTGGCGCTCCTCATCGCGATAATGGTGGTCATGGACGTCTGGCGCGC GCCGCAGGCGCCTCCGGCGTTTGCCGCGACACCATTACATACGCTGACGGGAGAGTCGAC AACTCTGGCGACCTTGAGCGAGGAACGCCCCGTACTGCTCTATTTTTGGGCCAGCTGGTG CGGGGTATGCCGCTTTACCACGCCTGCGGTCGCTCACCTGGCGGCGGAAGGGGAAAACGT CATGACCGTTGCGCTCCGCTCCGGCGGTGATGCTGAGGTTGCCCGCTGGCTGGCGCGCAA GGGCGTTGACTTCCCGGTCGTCAATGATGCTAACGGCGCCTTATCCGCTGGCTGGGAAAT CAGCGTGACGCCAACGCTGGTGGTGGTTTCACAAGGTCGGGTTGTGTTCACCACCAGCGG CTGGACCAGCTATTGGGGCATGAAGCTTCGGCTGTGGTGGGCAAAAACGTTCTGAATATG CGCCGGGGTTTCCCGGCGCTAACGCGTTTACTGTAAGAAAAACCTCCGTTTTGCGAAATC GTTCCCGGAAAAATGATCCATTTCTGTCACACTCAGAACGATTTGATAACAACAAGAGGT CATAGGGATGAAAAAATCATTACTCGCTGTTGCTGTGGCAGGGGCTGTTTTGTTGTCATC CGCCGTACAGGCGCAGACAACGCCGGAAGGTTATCAATTACAACAGGTGCTGATGATGAG CCGCCATAATCTGCGGGCGCCGCTGGCGAATAATGGCAACGTACTGGCGCAGTCGACGCC GAACGCCTGGCCGGCGTGGGACGTTCCCGGCGGGCAACTGACGACGAAAGGCGGCGTGCT GGAAGTCTATATGGGACACTACACACGTGAATGGCTGGTCGCGCAGGGGCTGATACCGTC GGGAGAATGTCCGGCGCCCGACACGGTATATGCCTATGCGAATAGTTTGCAGCGCACCGT CGCCACCGCGCAATTTTTCATTACCAGCGCTTTCCCCGGCTGTGATATTCCTGTTCATCA TCAGGAAAAAATGGGCACTATGGACCCTACCTTCAATCCGGTGATTACCGATGATTCCGC CGCGTTCCGGCAACAGGCCGTACAGGCGATGGAAAAGGCGCGTAGTCAGCTACATCTTGA TGAGAGTTATAAACTGCTTGAGCAGATAACGCATTATCAGGACTCGCCGTCCTGCAAAGA GAAGCATCAGTGTTCGCTAATCGACGCGAAAGATACCTTCAGCGCGAACTATCAGCAAGA GCCTGGCGTGCAGGGGCCGCTGAAAGTAGGGAACTCGCTGGTGGATGCGTTTACCCTGCA ATATTACGAAGGCTTTCCGATGGATCAGGTCGCTTGGGGCGGGATCCACACCGATCGGCA GTGGAAGGTGCTGTCAAAACTGAAAAACGGCTACCAGGACAGCCTGTTTACCTCACCCAC GGTGGCGCGCAATGTCGCTGCGCCGCTGGTAAAATATATCGATAAGGTGCTGGTTGCCGA GCGCGTTAGCGCGCCGAAGGTTACCGTGCTGGTGGGGCATGATTCCAATATCGCGTCGCT GCTGACGGCGCTGGATTTTAAACCCTATCAGCTCCATGACCAGTATGAGAGAACGCCGAT TGGTGGTCAGCTTGTCTTCCAACGCTGGCATGACGGTAACGCTAACCGGGATTTGATGAA AATCGAGTATGTCTACCAGAGCGCCCGGCAGTTACGTAATGCGGAAGCGTTAACGCTCAA ATCGCCTGCGCAAAGGGTAACGCTGGAACTGAAAGGATGTCCGGTGGATGCGAACGGCTT CTGTCCGCTGGATAAGTTCGATAACGTCATGAACACTGCTGCAAAATAGCCGTATGCCCC CGCGCAGGCGGGGGCGTTTGTGTTATACGTTCTTACGTTCGATGACTTGTTCGCCCCAGA AGAGCGAGTCTTTGTCCGTTTTCTCAAAGGCTTTGATCAGCACCTCATCGCTACCTTCTT CCCATATTTTTTCTGCCAGTTTCTCGTCATAGTGAGCGACTTCAAAAATGGCTTCGGCAA TTTCCGGCGACGTATTACGCAGGCTTGCCCATTCGCCGACGCGGTGCGCTTTTGCTTCTT GAGTTGGCATTCGAATCCTCCTGTTGAAGATTAGCCGTTGAGTTTGACTGCCAGACCGGC GACGTATTCCCCCTGATAGCGAGCGATAGAGAGTTCCTCCTGGCTTGGTTGACGTGAACC GTCGCCTCCAGCGATAGTCGTTGCGCCGTAAGGCGTACCGCCGCGAACCTGGGAGACGTC AAACAGTTCCTGTGCGGAATAGCCTATCGGGACAATCACCATCCCATGATGGGCAAGCGT AGTCCAGGTCGAGGTGATGGTCTGCTCCTGGCCGCCGCCCGTTCCGGTAGAACTGAACAC GCCGCCGAGCTTGCCGTATAGCGCGCCGGATGCCCACAGTCCGCCGGTTTGGTCCAGGAA GGTACGCATCTGGCCTGACATATTGCCAAACCGGGTTGGCGTACCAAAAATAATGGCATC GTAATCCGCCAGCTCCTGTGGGGTGGCAACCGGTGCGTTTTGCGTTTTACCGCCAGCTTT TGCGAAGATTTCAGGCGGCATTGTTTCTGGCACACGCTTTATAATGACCTCTGCGCCGTC GACTTTCTTTGCCCCTTCCGCCACCGCGTGCGCCATGGTTTCAATGTGTCCGTACATGGA ATAATAGAGCACCAGAATCTTTGCCATTTGTACTACTCCTCAGATTAATCAGGTGTGTAG CGATTCGCTACGTCTATTTAAAGATATGCCCTCCTGTGAAGAGTGCAAATTTCAGCGCCA TTTCTTTGATTTATAACAATAATTAATTTGGCGACCTTTGTTGCAAAATGATACATTTTT AAGCGCTTTGATTTTTCCAAGTATAAGAATAACTTATTTATTTCTCATGGTTATTATTCT GCATATTCGGCTTCTGATGTTGCAGAATATTTCGGTAAGCGGCCTACCACGGCGTTTTTC ACTATGCTTAATTTTACGCGGCGTTACTGATGATATCGTTCATACGCGGCGCGAGGAGAT ACTCCTCATTACCTATGCAATATGATGTCTAATCTATGACGGAGGTCAGTAATGGCAAAC CATCGTGGCGGTTCCGGTAATTTTGCGGAAGACCGCGAAAGAGCATCAGAAGCAGGTCGT AAAAGTGGTCAGCACAGCGGGGGCAATTTTAAGAATGACCCGCAGCGTGCATCCGAAGCA GGCAAAAAAGGGGGCAAAAGCAGTAACCGTAATCGCTAGCCTGCGTCACAACAGCAAGAC GCTGAGCGTTTCGCGCTAAAAAGCGTCATGCGCCACCGCCGCCGGATTTCCGGCGGTTTT TTTGTTTATAAGCCGGATTTGGTATGCTTGCGTCCTGACGAAAAGGAGAGGGCGCATGTC GCAACGCACAGAGAAAAAAATCGGGAAACGTTCGCAGGCCACCGGTGCAAAACGGCAGCT TATCTTAACCGCCGCGCTTGCCGTTTTTTCCCAGTATGGCATTCATGGCGCGCGTCTTGA ACAGGTCGCCGAGCGGGCAGGCGTCTCCAAAACCAATCTGCTTTATTATTATCCCTCGAA AGAGGCGCTGTATGTCGCGGTAATGCGACAGATTCTGGATGTCTGGTTGGCGCCGCTCAA GGCGTTTCGCGCAGAATTTTCCCCTCTGGAGGCCATCAAAGAGTATATCCGTCTCAAGCT GGAGGTTTCGCGTGATTATCCGCAGGCGTCGCGGCTCTTCTGCATGGAGATGCTGGCGGG CGCGCCGCTCTTAATGGATGAACTGACCGGCGATCTAAAAGCGTTGATAGATGAAAAATC CGCGCTGATTGCCGGATGGGTGCACAGCGGGAAACTCGCGCCCGTTTCTCCGCATCATTT GATCTTCATGATTTGGGCCGCCACGCAACATTACGCCGATTTCGCCCCTCAGGTTGAAGC GGTAACCGGCGCGACGCTTCGCGATGAAGCCTTTTTCAACCAAACGGTCGAAAGCGTTCA GCGCATTATTATTGAAGGGATTCGCGTGCGTTAACCGGCTGGCGGCAGTGGGCAGCTCAA ATCACCCTCTTCACATTGCAGCAGCGAGGCTAAAAACGCTTCGCGTTCGTTCGTTTTATC GGTCAGGCACTGGCTGGCGATCATGGGTTGAACGCTGCCGCCCTCCGTACCTGAGCGAAT CAGCGCGCAATCGGCGTCGCGCAGGGCAATCCATGCCACCTGCGCTTTTTGCAATAGCTC ACGCTGCGGCGGTTGCGCACGCTTAATCGCGCTTTGATAGGTTTCGTTCAGCTTTTTATC TGCCGCCTGGTATTGCGCGGCGGCGCAGCGATTCATTTCCAGCTGCGTACTGGCGCTGGC ACACTCATCGGCCAACGCCTGACTGCTGAACAACAACGCCGCGCAGGTAAGGAAAATTCG TTTCATACGGTCCTCTGACGCGAGTAAAAAGGCTCCATTGACGGAGCCTTAATTAACCAC AGTATTAGCCAATTGTCATCAGGCTGGCATTACCGCCAGCGGCGGCAGTGTTTACGCTCA GCGAACGTTCAATATAGAGCCGTTCCAGCAGCATATTGCTTTCGCCGCGGGCGAACCCCT GTACCGACACTATCGCGCCTTCGCGGGCGGCGACGGCTTCGCACACGGTTCGCAGCTTGT CGGAGTCGCCGTGGAAAATCACCGCGTCAAACGGCTGCGCCATCAGCGTTTCCGCTTTCG CAAACTGGACACGCGCCGCGACGGCGGCGGGGAGACGTTTCGCCAGATCGCGGTGGAAGG CGTCGTCTGACCATAGCGCCTGACTGCCGACGGCGAGAACGGCGGCAAGCTGCGTCAACG CGTCCTGTTCATCATCAGCCAGGCATAACACCCGTTCACGCGGCAACAGCGTCCAGGTAT TACGCTCGCCGGTCGGCCCCGGTAGCAGGCGCTGCGTGCCGGCCTGCGCCAGATCGGCGA ATTGTCGGCAGAGCGTCTGTAGCGCCGGGCGATCCGCCGCCCATTGCGTCAGAGCGGTCA ACGGCGCGAGTAGCGTGGTTTTAAGCTGCGCATCCACCGGGTAACGCGCATCCTGACGAG TCAGCGTCGTATTGAGCGCATTGGGCGGGCGGTGTGCCAGCAGGCGGTAGAGATAGAGCG GCCCTCCCGCTTTTGGCCCGGTGCCGGACAGGCCTTCGCCGCCAAACGGCTGGACGCCGA CGACCGCGCCCACCATATTACGGTTAACGTACAGGTTGCCGACATGGGCGGAACCGGTGA CTTGCGCAATGGTTTCATCAATACGGGTATGTACGCCCAGCGTTAGCCCGTAGCCGGAAG CGTTAATCTGTTCGATAAGCTCCGCCAGTTGGTTACGGTTATAACGCACGACGTGCAGCA CGGGCCCGAAGACCTCTTTTTCCAGTTCTGCGAAGTTTTCCAGCTCAATAAGCGTGGGCA TAACAAACGTACCGGTCTGCCATTCCTGCGCGTCATCGCTGTTTTCACGCGCGGCCTGGA AAACCGGGCGGCCTTTGGCGCGCATCGTCTGGATATGACGTTCAATGTTGGCTTTGGCCT CGCTATCGATCACCGGCCCGATATCGGTCGTCAGACGGCCTGGATTCCCCATCCGACACT CCGCCATCGCGCCGCGTAACATTTTCAGCGTATGTTCGGCGATATCGTCCTGCAAACACA GCACGCGGAGCGCGGAACAGCGTTGTCCGGCGCTGTCGAAGGCGGAAGCCAGCACATCCA CGACCACCTGCTCGGTGAGCGCGGAAGAGTCGACAATCATAGCGTTCATACCGCCGGTTT CCGCAATCAACGGAATAGGGCGCCCCTGGGCGTCAAGACGCGTGGCGATGTTGCGCTGCA ACAACGTCGCGACCTCCGTGGAACCGGTAAACATCACGCCGCGTACACGCGCATCGGCGG TAAGCTGGGCGCCGACGGTTTCTCCCCGTCCCGGCAACAGTTGCACGACGCCCGGCGGTA CGCCCGCTTCCAGCAAAATGGCAATGCCCTGGGCGGCAATCAGCGATGTCTGCTCTGCCG GTTTCGCCAGAACGCTGTTACCTGCCGCCAGCGCGGCGGCGATTTGGCCAGTGAAAATGG CCAGCGGAAAGTTCCACGGACTGATACAGACCACCGGCCCTAACGGGCGATGCGTTTCGT TATCGAAATCGTCACGCACTTGACCGGCATAATAATGGAGGAAGTCTACCGCTTCGCGCA CTTCGGCAATGGCGTTGCTGAACGTTTTCCCCGCTTCACGCACCAACAGGCCAATCAACT GCTGCATTTGGTCTTCCATCAATACCGCCGCCCGCTGCAAAATAGCGGCGCGTTCTTGCG GCGGCGTCGCAAACCAAACCGGCGCCTGATTGACCGCGTTTTGCAACGCCTGTTCAACCT CGCTTTCTGTCGCTTCGCGTCCCCAGCCAACAATATCTTTCGGTTCCGCCGGGTTGATAA CCGGCGTCATCTCACCGTCGGCCACCGGTTGTTCCAGCACAGGTTTGGCCTGCCATTTCT GCATGGCGTTGCTTAACAGGGCAGAAGAAAGCGAGGCGAGGCGATGTTCATTCGCTAAAT CAAGTCCGGCGGAGTTTATCCGACCTTCGCCGTACAGATCGCGCGGCAGCGGAATTTTTG GATGCGGTATGCCAGCCTGACCTTCCTGCTGCGCCAGTTTTTCCACGGCCTCGACCGGGT CGGCCACCAGTTCATCGAGCGGTAGGGTGGCATCGGCGATGCGGTTGACAAAAGAGGTGT TGGCGCCGTTTTCCAGCAGGCGTCGTACCAGATAGGCCAGCAGGGTTTCGTGTGTTCCCA CCGGCGCGTAAATACGGCAGGGACGGTTAAGTTTTCCGTCCCCCACTTTACCGGTGACCT GTTCATACAGCGGTTCTCCCATGCCGTGCAGGCACTGGAATTCGTACTGACCCGGATAGT AATTTTGCCCGGCCAGATGATAAATCGCCGCCAGTGTGTGAGCGTTATGGGTCGCGAACT GCGGGTAGATCAGATTAGGGACGGCGAGCAGTTTTTTCGCGCAGGCCAGATAAGAGACAT CGGTATACACTTTGCGGGTATAAACTGGATAGCCCTCCAGCCCTTCCATTTGCGCGCGTT TGATCTCGCTATCCCAGTAGGCGCCTTTCACCAGACGAATCATCAGCCGACGGCGGCTAC GGGAGGCCAGATCGACTAAATAATCAATGACCAGCGGGCAGCGTTTCTGGTAAGCCTGAA TCACAAAGCCAATGCCGTTCCAGCCCGCCAGTTCGGGTTCGAAGCAGAGTTTTTCCAGCA GATCAAGCGAGATCTCCAGACGATCCGCCTCTTCGGCGTCGATATTGAGACCGATATCAT ACTGGCGCGCCAGCAGCGTCAGGGATTTCAGGCGCGGATAAAGCTCCTCCATTACCCGAT CGTATTGCGCGCGACTATAGCGTGGATGCAGGGCGGACAGCTTAATCGAGATGCCTGGCC CTTCGTAAATACCGCGACCGTTAGACGCTTTGCCGATGGCATGAATCGCTTGCTGGTAAG AGACCATATAGGCCTGCGCATCGGCGGCGGTTAACGCGGCTTCGCCCAGCATATCGTAAG AATAGCGGAACCCTTTCTCTTCCAGTTTTCGGGCATTCGCCAGCGCCTGAGCAATGGTTT CGCCAGTCACGAACTGCTCGCCCATTAAACGCATCGCCATGTCGACGCCTTTGCGGATTA ACGGTTCGCCGCTCTTGCCGATAATGCGGTTCAGCGAGCGCGAAAGATTGGCTTCGTTAT GCGTTGAGACCAGTCGGCCGGTAAAGAGCAGCCCCCAGGTGGCGGCGTTTACAAACAGCG ACGGGCTACGGCCAATATGCGACTGCCAGTTGCCATTACTGATTTTGTCGCGAATTAACG CATCGCGCGTAGCTTTGTCGGGAATACGCAGCAGCGCTTCCGCCAGACACATCAGCGCTA CGCCTTCTTGCGAAGAGAGGGAAAACTCCTGCAACAGGCCTTGCACCATACCCGCGCGAC CGCTGGCGGATTTTTGATTGCGCAATTTCTCCGCCAGTTGATACGCCAGTTTATGCGCCT GCTCAGCGACAGGCGGCGACAGGCGCGCCTGTTCCATTAGCATTGACACCGCATCGGTTT CCGGGCGGCGCCAGGCGGCGGTGATGGCGGCGCGAGAGACGGATTGGGGAAGAATCTGTT CGGCAAACTCCAGAAAGGGCTGATGCGGCTCATCCTGCGGCGCGACCGGCTCCTCGCTTT CATTTGCCGCGCCGGCAAACAGCGCAGGTAGCTCCGGTAGCGTATCGCTATTTTCCAGCT TGTCCAGATAGCTAAAGATTGCCTGTTTTATTAACCAGTGCGGCGTGCGATCGATACGCG ACGCGGCCATTTTGATCCGTTCGCGCGTGGCGTCGTCCAGCTTAACCCCCATCGTGGTGG TTCCCATACCCTCTACTCCTGTTATTCGCTCTATCTGCTAACCAATAGTTAGCGGAAAAT ATCCACTATATTGCAACTTTGTGCAACCGCGTTAAATGTGACCTGCGTTGCAAGCTTAAA AATGAATAAATTGTTAAAAAAAGAAAGTGGGAGTCTGACGGGGAAAACCATCTGGATTTA TTTTCTCTGCGGTAGTTAACACTTTTAAAAGGTGCAACCGCAAAAAATGTGAGAGAGTGC AACCTGGAGAAAAATAGTATCCCTCTGCAATCAAATTTGATGTAAATGGTGTGTTAAATC GATTGTGAATAACCACCGATTCCGGCAGGATACGGTCGCCCTGGTAAACATAACACCCTT GCCACGTTCCGGCAGGGTACAAAACGGCACGCTACGGTAGTGCCAATAAATAAATTTGGA GAACCTTGATGGCTATTAGCACACCGATGTTGGTGACATTCTGTGTCTATATTTTTGGCA TGATATTGATTGGGTTTATCGCCTGGCGCTCAACCAAAAACTTTGATGACTATATTCTTG GCGGTCGCAGCCTGGGGCCGTTTGTTACGGCTTTATCAGCCGGCGCGTCGGATATGAGCG GCTGGCTGTTAATGGGGCTGCCTGGCGCTATCTTTCTGTCGGGGATCTCTGAAAGCTGGA TCGCCATTGGCCTGACGTTAGGCGCATGGATTAACTGGAAGCTGGTGGCCGGGCGCCTGC GCGTGCATACCGAATTTAACAATAACGCGCTCACGCTGCCGGACTATTTTACCGGTCGGT TTGAGGATAAGAGCCGAGTCCTGCGTATTATTTCCGCGCTGGTCATTCTGCTGTTTTTCA CTATCTATTGCGCATCAGGTATTGTCGCTGGGGCACGACTGTTCGAAAGCACCTTCGGTA TGAGCTATGAAACCGCACTGTGGGCGGGGGCCGCGGCAACCATTATTTATACCTTTATCG GCGGGTTTCTTGCCGTTAGCTGGACGGATACCGTTCAGGCCAGCCTGATGATTTTTGCGT TAATCCTGACGCCGGTGATGGTTATTGTCGGCGTAGGCGGTTTTAGCGAGTCGCTGGAAG TGATCAAGCAAAAGAGCATCGAGAATGTCGACATGCTCAAGGGGCTGAATTTTGTCGCTA TTATTTCTCTGATGGGCTGGGGGCTGGGTTACTTCGGTCAGCCGCATATCCTGGCGCGCT TTATGGCGGCGGATTCCCATCACAGTATTGTTCATGCGCGTCGTATCAGTATGACCTGGA TGATTCTGTGTCTGGCGGGCGCGGTGGCGGTGGGCTTCTTTGGCATTGCGTACTTTAACA ATAACCCCGCGCTGGCCGGGGCGGTGAACCAAAACTCAGAACGCGTATTTATTGAACTGG CGCAGATCCTGTTTAACCCGTGGATTGCCGGTGTTCTGCTGTCTGCTATCCTGGCGGCGG TGATGTCGACGTTGAGCTGTCAGTTGCTGGTATGCTCCAGCGCGATTACGGAAGATTTAT ATAAGGCTTTTCTGCGTAAAAGCGCCAGCCAGCAAGAGCTGGTATGGGTAGGGCGAGTGA TGGTGCTGGTGGTAGCGCTGATCGCCATTGCGCTGGCGGCGAATCCTGATAACCGTGTGC TGGGGCTGGTGAGCTACGCCTGGGCTGGATTCGGCGCGGCATTTGGACCTGTTGTCCTGT TTTCTGTGATGTGGTCGCGTATGACACGTAACGGCGCGCTGGCGGGAATGATTATTGGCG CGGTGACGGTTATCGTCTGGAAACAATATGGCTGGCTGGATCTGTATGAGATTATCCCTG GCTTCATTTTCGGCAGCCTGGGGATCGTAATCTTTAGCCTGCTTGGCAAAGCGCCGACAG CAACGATGCAGGAACGCTTTGCAAAAGCGGACGCGCATTATCATTCCGCGCCGCCGTCGA AGCTACAGGCGGAATAACCGACATGTCCGATAGCATTATTGCCATCGGATATATTTTACC AGGCGGCGTTATACGCCTGCCTGGTCCTCTGATAAGTCCCGGACCGATTGACTGAAGGTG TTCAGGTAAATGAGGACGCTCTCTCAAACTATTTTTAGCCCTTGAGCGCCGTTAACGCGG CCGTAATACGTCTCGAGTAATCACTAACTGACCATATATGAAATCGCCTGTTAATGGTAC CAATAGCCTTGACGCAATAGAGTAATGACAAAAATTAAAACGAGTCAGCGTTACTGGCGT AAGTATGCCGCACAAAATTTTGCATAAATAATGCCGTTTTAGCGATGGGAGAGAGGACAC GTTAATTACTCCGTTTTAATCTTTTATATGTTGAATATTCAATGGGTTATGGGTGTTTTC ACCATTAATACCCATAGTAGCTAATGATTATCTTTTTTAGTCTCCTGCCAATGAAATAAT TGTGTAATCTTTCTGTAAGAGACTGACAATGACGCAATAATGTTTGGTTAATGTTTGGTG AATATATTGTTGCATTATTGATGTTTTGTGTTGTACTTAGTAGTAATAGCGGTAGTTCCC CGGCAGTGATGGTCACTCACTATGGAGATCGCGAATGGTAATGTCCGCACCAGGACACAT TGTTTACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGTGGTGGTCTTGTCAT CTTAAAAGCTCTCATCATTTCCCTTACTGTCCATACCCATGACGCCATATGTGGTGCGCG TAGCCGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAGGAAGCCAACCCTCA GATGTGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTATACCTACAACTCAAG GTGCTATCCATGGGAAGACAAAAAGCAGTGATCAAAGCTCGTCGTGAAGCAAAGCGTGTG TTGAGACGAGATTCGCGTAGTCATAAGCAACGTGAAGAAGAATCGGTCACGTCACTGGTA CAGATGGGCGGAGTAGAAGCCATTGGCATGGCGCGCGATAGTCGCGATACCTCTCCTGTT AAGGCGCGAAATGAAGCACAGGCGCATTATCTGAACGCTATCGACAGTAAACAGCTTATT TTTGCGACCGGCGAAGCCGGCTGCGGAAAAACATGGATCAGTGCGGCAAAGGCGGCAGAA GCATTGATTCATAAGGACGTCGAGAGGATCATTGTGACGCGTCCGGTATTGCAGGCTGAT GAAGATCTTGGTTTTTTGCCCGGTGATATCGCTGAAAAATTCGCGCCTTATTTTCGTCCC GTCTACGATGTCCTGCTTAAACGGTTGGGCGCGTCCTTTATGCAATATTGTTTGCGCCCG GAAATCGGTAAGGTAGAAATTGCCCCGTTCGCCTATATGCGTGGGCGTACTTTTGAAAAT GCGGTCGTGATCCTCGACGAGGCGCAAAATGTGACTGCGGCGCAAATGAAAATGTTTTTG ACGCGATTAGGCGAAAATGTCACGGTCATTGTCAATGGCGATATTACGCAATGCGACCTG CCGCGCGGTGTGCGTTCCGGGTTGAGTGATGCGTTGGAACGCTTTGAAGAAGATGAAATG GTGGGGATTGTGCATTTCAACAAAGACGACTGCGTGCGCTCGGCGCTTTGTCAGCGAACG CTCCACGCATACAGCTAATATAGCATTGACTTTCAGAGCCCGGGAGACCGGGCTTTGTTG TCTATAAAGCGTCCAGCAGACTCATGGACAAAAAAGGAAAATGACGCCTGTACGTGAAGG GAATTATTTTGTCATGTCCAGGGCATTCATTGTCCGTAATTTGCTTTCTCGGGCCTGTTC CGGCGAGGACTGTACAAGAAGGGTATAGAGCAGGTCAAAGACGAAAAGCTGCGCGGCTTT CGTACCGATCGAGTCACCCTGCAACATTCCTTGCCGATTACCATTGATCAGGCAAAAATC GGCCTCTTCACATAATGGAGAACCCAGATTATGGGTAATGGCGACTGTGGTGGCGCCAGC CTGTCGGGCCAATCGGAGTGAATGCACTGTTTCTGGCGATGTGCCCGAGTGACTGACACC CATCGCGACATCGCCTGCTTTTAATAGCGTAGCCTGCATGTACATAAAATGGTTATTGCT TACCGCATCGCCCCGTAAACCAATACGCATTAGCTTGTGTTTCATATCCAGCGCCGTGAT CCCCGATGAGCCCACACCAAAGATATAAACTGAGTGACAGTGACGTAGGGCGTCCACGAC ACCGAGAACCTGTTGCATATCAAGCAGATTTAGCGTTTCAGATAATACATTACTAATGGT GTTCTGCAATTTTAAACCAATGGCGTGGGCATCGTCGGATTCGCTAACTTCGGCATCCAG TAGAGGACTACTGTCATCAGACTCGGTAGTGGCAAGTTCAATGGCCAGGTCCATTTTAAA ATCCTGAAAACCTTTATAGCCCAGGGTGCGACAAAAGCGAATAACCGTGGCTTCTCCGGC CTGTGTGTCGCGCGACAAATCGGCAATAGATGACTGTGTCACCTGTCTGGGGAAGGCTAA AATATATTGCGCAATACGCTGGGAGGCACGTGTCAGGCTTTTTTGCATAGCACCCAGAGT GTCAAGGATTTTTCCGGGTTTAAGACGTGGGGGTTGAGGCTCCATATAGTTCCTGCTCTT GAGGGCTGATTGCGGCACAAAGCCTGCAATATCGAACAGAGCAGAGCCTATCAAGTCTGC GGCATGAAAAAAAGCGCGATGTAAGTAAAGGAGGGGGAATATTTACATCGCGTTGCCAAC TTATGACAGAACATCACTGGAGAGTAATCTGTTTGCTCTTACGGTGTTTATAGCGCGCCA TCTGTCGGATGGTTTATATCTGGCCCGGTATTGTCGCCCCGCGCGTTGGCGTCACCGTGT GCTGTGTCGGTATAGCGTGGTATCATGAAATCATAATGTCACCTTTGGTTCAGGTTTTTC ATCCAGCGTCAATGGCGGTGCCGGGGCAAATAACGGGGCGAAAATAACGCCGCTGATCAC CACGCTTAGCGAGCCAATGACCCCATAAAAGAAGAAGTTAAGGTCAGTGGCATAGCGTGT GCCCAGCACGGTAATGACGCTGATAATAATTCCTAAAACCGCACTCCCGGCATTTGCTCG TTTAAAGAAAATGCCCAGCATGAACAGACCGGTCATTGGCCCTCCCATCAGACCTATCAG ACTATTAAATGCATCCCAGATTTCTGATTCATCGGCCATGACCAGCCATACCGAGGCCGC GCTACTTATCAGGCCCGCGACCAGAATAACTAACTTAGCTATTTTCATACGGTTTTCTGG CGTTCCTTTTTTATGACTCAAACGCTGATAGATATCGGAATTAAAACAACTGGAAATGCT GTTTAAGCTGCTGGAGATGCTGGACTGCGCGGCAGCGAAAATAGCGGAGATTATCAACCC TGCAATGCCGACTGGCATTTCGGTGACCACGAATAAGGGCAAAATGCCGCCAGTGTTGAA TCCCGCCGGTAATAATTGTGGATGTTGCTGATAGTAGACAAATAATGCCGAGCCGATAGC AAAAAAGAAAACAGGGATCACAGCAACCAGTTTGGCATTTGTAAGTAATGTTTTCTTCGT TTCCTCTATGGAGTCAGTCACGATATAGCGTTGGACCACATCCTGACTGGCAGTAAATTG CTGAATATTGGCAAACAGAAAACCAATCATCAATACAGGTACTGTGCTTTCCGTCCAGCT CCAGTGGAACTGCGTAGCCGGAAAGAATTTATCCGCCTGCTGCGTCACCGTAAAAATTTC ACCAATGCCGCCCTGGACTTTGAGACATATCACTATAAAAATCAGTATCGCGCTGCCAGA AAGTAAGAGACCTTGAATAACATCAGTCCATATTACTCCTTCAATTCCCCCCCATCCAGG TATAAATGATACACATCACACTAATCAACAGTACCAAAATCACCGGGTCTATAGCGATGA AGGGGCGCAAGGCCAGCACGGTGAGGAAAGTGATAATGGCGATACGTCCAATATGAAACA ACATAAATGACATGCTGGCGAACAGACGGCAGCGCACATCGAACCGTGCTTCGAGATATT CATAGGCTGATGTGACTTTCAATTTCCGAAAAAACGGAATATAGAAATAAAAAACCAGCG GTAAAATTGCGATAGCCAGATACTGACCAATGATAAACGTCCAGTCGGAAGTAAACGCTT TGGCAGGAATTGACATAAATGTAATTGAGCTTAACGTAGTAGCAAATACACTGACCCCAG CCGCCCAACCAGGAACCCGGCCACCACCGCGAAAATAATCGTCTGCTGTTTTTTGCCGTC TGGAAAAATAGACACCGACTAACATCATGGCCAGGAGGTAGCCAAATAATACAAAATAAT TAACGATGCCGAAAGAATGTGTAATCATAGTTCTTTCCTGCTTATGGTTTTGAGTAGCGT TGCGGTCATCGTCTGTGTATTTTTATCTTCCCATCATTCAGACGATACGATATTCAGATC AAGCAATAGTTTTTGTTAATCTCAATGACGCTAATCATGAGATGTAAAAGGCAGAGCATT TATGCTCCACCAATGGTGATGCCCAGACGTATGTCCTGCCGGATACCTGAAATAGCAGCT ATCCGATATTGCGTTCAAACAGGCTTCAGGCCTGGGTATCGTATTTGCCGATAGCATTCT TAACGTCGGATTATTCTCTGAGACATAAATATCAATAGTAAGCGTGTTCATTTTCTTTTC CTGTTCAGCGTTTTACTGCGTGACTGAACCACTGACAGATATGCTCGATACGGGTGATAG CGGAACCAACGGTAACTGCCCAGGCACCATGCTCAATAGCATTGGCCGCCAGTGCAGGCG TGTTATAGCGCCCCTCGGCAATAACACGACAACCTGCATGACTCAGTTGTGTCACCATTG CCAAATCTGGCTCAACCGGCGTGATGGGACCGGTATAGCCAGACAGTGTTGTACCAATGA ATTCGATTCCTTTCTGATGGCAACTTATGCCTTCATTCACGGTTGAACAGTCTGCCATCG CCAGTAATCCATGCAGGCGAATACGTGTCAGTAAACTATCAATATCAACCGGGCGAGAGC GGAATGAGGCATCAAAAGCGATAATATCGGCACCTGCCTGCGCCAGGGCGTCAACATCCT GTAAATATGGAGTGATACGGACTGGCGACCCTGTAAGGTCACGTTTAATTATCCCAATAA TAGGAACAGAAAGATGGGGACGAACAGTCCGCAGATTCTCAATGCCTTCAATGCGCACAG CGACCGCACCCGCCGAAGCCGCTGCCTGTGCCATTGCAGCCACAATTTCAGGTTTATCCA TAGGGCTGCCTGGTACCGGTTGGCATGAGACAATCAGCCCACCGTTTTCGTGTACACTTT GTTCCAGCCTGGCTAATAGTGACATCCAGTTCCGCCTTATATATTTTGAAGTTTTACTCC GTTTTATATTATGTTGTGGAGTGTTGCTGCATCAAGCAAAAAGATAGAAAAATGTGAACA CAGTCATAAGGTATGTTTGTCATTCAATTACTGCGCCAGCGGATTTGAGGCTATAACCTG AAGCTACAAGACAAATACAATTCATTCTGACGGCAGCATGCTGTATTTTATTAACTGCTT CCGGCATAAAGATAAAATGCTCAGAAGGAGCTTATACGCCACGGGATAGCCAGTATGAAA TGCATCACATAATTCTTGTTGTATTTATTCAGAATGCAATCACTAATGAGTTTGCCCATA ACAGGTCACCCATAATCACTTCTAACATCACCATAGTGTGCTTTTACCTCGCACATGGTA ACCCCATGTAATTATTTTTAGCGCTTGGTCACATTTTGTCATTTTCATTGTTGAAATTAT GCACCATAAGATCACTAATGATGAAGCTTTACTCCAGTTGTATTTCTTCGCATGGGGATG CAGATGAAAAATTTTAAGAAAATGATGACGCTAATGGCGCTATGTTTATCAGTTGCTATC ACCACATCAGGATATGCAACCACGCTTCCTGATATACCAGAACCACTGAAAAATGGTACT GGCGCTATTGATAATAATGGCGTGATTTATGTCGGCTTAGGTACCGCAGGGACATCCTGG TATAAAATTGATCTTAAAAAGCAACATAAAGACTGGGAGCGTATAAAGTCGTTTCCTGGT GGAGCTCGTGAGCAATCCGTGTCGGTATTTTTAAATGATAAGCTGTATGTTTTTGGTGGC GTAGGGAAAAAAAACAGTGAATCACCGTTGCAGGTTTATAGCGATGTGTACAAATACTCA CCGGTGAAAAATACATGGCAAAAAGTTGATACTATATCTCCAGTTGGATTAACAGGGCAT ACGGGAGTAAAATTAAACGAAACGATGGTACTTATTACCGGAGGGGTTAATGAGCATATC TTTGATAAGTATTTTATTGATATAGCGGCTGCGGATGAAAGTGAAAAAAATAAAGTCATC TATAATTATTTTAATAAACCTGCCAAAGATTATTTTTTTAATAAAATCGTATTTATCTAC AATGCTAAAGAGAACACATGGAAGAATGCCGGTGAGCTGCCAGGCGCGGGGACGGCAGGA TCGTCATCGGTAATGGAAAATAATTTCTTGATGCTGATTAATGGTGAGCTCAAACCGGGT TTACGTACCGATGTGATTTACCGCGCCATGTGGGATAACGATAAGCTAACATGGTTGAAG AACAGCCAGTTACCGCCATCGCCTGGAGAACAACAGCAGGAAGGGTTGGCCGGAGCATTT TCGGGCTATAGCCACGGTGTCCTGCTTGTCGGTGGTGGCGCGAATTTTCCGGGAGCAAAA CAAAATTATACTAATGGAAAGTTTTATTCCCACGAAGGGATAAATAAAAAATGGCGAGAT GAAGTCTATGGTTTGATTAATGGCCATTGGCAATATATGGGTAAAATGAAACAACCTCTC GGCTATGGTGTATCAGTAAGTTATGGTGATGAAGTTTTCCTTATTGGTGGTGAAAATGCT AAAGGGAAACCTGTTTCGTCTGTAACCTCCTTTACCATGCGTGATGGTAATTTATTAATA AAATAATTTTTTAAATACAAAAATAAAGTTAATTGATAAGCGGAGTATTTTATGAAAATC AACAGATATCTTCTGGGTATGGTTTCGTTTATAGCATTTTCATCATATCTACAAGCGGCA ACCCTTGATTATCGGCATGAATATGCTGATAGAACCAGAATTAATAAAGACCGTATTGCT ATAATTGAAAAGCTTCCTAACGGCATTGGTTTTTATGTCGATGCCAGCGTTAAATCGGGA GGAGTAGATGGTGAGCAGGATAAGCATTTAAGCGATCTCGTCGCAAACGCTATAGAACTG GGCGTAAGTTATAATTATAAAGTTACGGACCATTTTGTTTTGCAGCCTGGATTTATATTT GAAAGCGGTCCAGACACTTCAATTTATAAGCCTTATTTAAGGGCGCAATATAATTTTGAT TCTGGTGTTTATATGGCTGGTCGTTACCGTTATGACTATGCAAGGAAGACAGCTAACTAT AATGATGATGAGAAAACGAATAGATTTGATACTTATATAGGTTATGTTTTTGATGAGTTG AAATTGGAATATAAATTTACCTGGATGGATAGCGATCAAATTAAATTTGATAACAAAAAA ACAAACTATGAACATAATGTGGCTTTAGCCTGGAAACTGAATAAGTCATTTACACCATAC GTTGAGGTCGGAAATGTAGCGGTGAGAAATAATACCGATGAGAGACAGACCCGTTATCGC GTTGGATTACAATACCACTTTTGAGAAAGGTTAAAGAGTTACTGTACTAATCTTTGCTTA GTATTCATATCGATAATCTTATAGCCCGTAGCTACGTTACAGAACGTTAGACTTTGTCTT GAGTATTCACGTCCTTAACGTAGCTACGAACAAGGATGATAAACAATGAATATACGCCTT ACATAGCTACGATCTCAGGCGGTTGTCGGAAAGTGCCGGTTGATAGTGTCTTATTCGGCA ATTGATATGACTTAAAAATTAATTCCGTAAGCATTTCAGACGGTAACAGCAAATAAGGGT TTTATTGTGATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACACGTCCACAAAAAAAT GCTTTATTTTCAGCATGGCTGGGTTACGTTTTTGATGGCTTCGACTTTATGCTGATTTTC TACATTATGTATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTT GCCACAGCGGCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGAC AAATTTGGCCGTAAGCCGTTAATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGG TTAAGTGGCCTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGTTTTATTGTCGGTATG GGGATGGCGGGGAAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCAT TTAAAATCTAAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCA GCCTATTTTATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGT TTGCTACCCGTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGG GAAGAAGCCAAACTCAGTGGTCTCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCT TTGTCAATGAAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATT GTTCTGTTCTCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTG GCGGGAGAGGGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGC ACTGTATTGGGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACG TTCAGCATTGGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAA GATAATTATTTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTT GGCGGGCTGGTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGT ACCGGGCTTATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACC TGGCTTGGAATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACC GCAACAATTCTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAA AGGTTTCAGTCAACAAAAGAATTTTAATAGAGGATAAATGATGACGAAATACGGTGTTAT AGGTACAGGTTATTTTGGCGCTGAACTGGCGCGATTTATGTCTAAGGTTGAAGGGGCGAA AATCACTGCGATTTACGATCCGGTAAATGCGGCTCCGATAGCGAAAGAGCTGAACTGTGT CGCCACTTCAACGATGGAGGCGCTTTGTACCCATCCTGATGTGGATTGCGTAATTATTGC TTCACCAAATTACTTACATAAAGCGCCGGTCATTGCGGCGGCTAAAGCGGGTAAACACGT GTTTTGTGAAAAACCTATCGCCTTAAATTACCAGGATTGTAAGGATATGGTTGATGCCTG CAAAGAAGCTGGTGTTACCTTTATGGCGGGTCACGTTATGAACTTTTTTCACGGGGTTCG CCACGCTAAAGCGCTCATCAAAGCCGGTGAAATCGGTGAAGTTACACAAGTTCACACTAA ACGTAATGGTTTTGAAGACGTGCAGGATGAGATCTCATGGAAGAAGATTCGCGCAAAGTC AGGTGGGCATCTGTACCATCACATTCACGAGCTAGATTGTACACTGTTCATCATGGATGA AACCCCATCCCTGGTTTCAATGGCGGCGGGGAATGTTGCGCACAAAGGTGAAAAATTTGG TGATGAAGATGATGTTGTCCTAATCACCCTTGAGTTTGAAAGCGGTCGTTTCGCGACACT TCAGTGGGGATCATCGTTCCACTACCCTGAGCACTATGTATTAATTGAGGGCACGACAGG TGCAATTCTCATTGATATGCAAAACACGGCTGGTTATCTAATAAAAGCGGGCAAAAAAAC ACACTTTCTTGTGCATGAAAGCCAGGCGGAGGATGATGATCGTCGCAACGGTAACATATC CAGCGAGATGGATGGCGCAATCGCTTATGGTAAACCCGGTAAACGTACGCCGATGTGGCT CTCATCAATTATGAAACTGGAGATGCAGTACTTGCATGATGTGATAAACGGTCTGGAGCC AGGCGAGGAGTTTGCTAAATTGCTAACGGGAGAAGCGGCGACAAATGCCATTGCTACCGC TGATGCTGCGACGCTTTCTTCAAACGAGGGGCGCAAAGTTAAACTCACTGAAATTCTTGG CTAAAATTTAAAGCCGGATGGTGGTGTTATTGGCCGGTGGCGCTGCGCTTATGTAGACTG GATAAGGCGCCCGTGAACTGTGCCGCCATCCGGCAATGGACGGGGGCTTAATGCGAAAAA AAGCCCGTACATTCGTACGAGCTCTTTCTTAAATATGGCGGTGAGGGGGGGATTGACTCG CTGCGCTCGCCCTTCGGGCAGCCCGTTCGCTGCGCGCCCGGTCTGTCCAACTGGCTGCGC CAGTTGTCGAACCCCGGTCGGTGGTTCTCATCCCCCCTTGGTTTGGGGGATACATATAAG CAAAAAGCCTGTACTTCTGTACAGGCTCTCAACTTGAAGATGGCGGTGAGGGGGGGATTC GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGAC ACCTCACCAAATTGTCGCTCCAGCATTACTGGAACGGGCGCTAATGTAGGGAAATATCCT TTCTACGTCAATCAACTTTTTTAAAAAAAAGCGCTTTTATACAAACTTCCATCAATCTGT GGCTTTAATAAGCGAAAACTGCTTTTTTTGCCCGCGCCGGGAAATTTGCTATGCTGCACA TCCCGTTGAAAACGCTGATAACAGGCGCAATCACATTCCGCACAATACTGCTCAGGAGAT AACATGGAGATAATTTTTTATCACCCGACATTTAACGCCGCCTGGTGGGTAAATGCGCTG GAGAAGGCTCTCCCACATGCGCGCGTTCGTGAATGGAAGGTCGGTGATAACAACCCCGCA GACTATGCGCTTGTATGGCAGCCCCCGGTTGAAATGCTGGCCGGAAGACGCTTAAAAGCC GTCTTTGTGCTGGGCGCGGGGGTGGATGCAATTCTGAGTAAATTAAATGCGCATCCGGAA ATGCTGGACGCCTCCATTCCTCTATTCCGTCTGGAAGATACCGGAATGGGCCTGCAAATG CAGGAGTATGCCGCCAGCCAGGTATTACACTGGTTCCGTCGTTTCGATGATTATCAGGCG CTGAAAAATCAGGCGCTATGGAAACCGTTGCCGGAATATACCCGCGAAGAGTTTAGCGTC GGTATCATAGGCGCAGGGGTACTGGGCGCAAAAGTGGCAGAAAGTCTACAGGCGTGGGGG TTCCCGTTACGTTGCTGGAGTCGTAGCCGCAAATCCTGGCCTGGCGTGGAAAGTTATGTA GGGCGTGAAGAACTGCGCGCTTTCCTGAACCAGACGCGGGTGCTGATTAATCTGCTGCCG AATACGGCCCAAACGGTAGGAATTATTAATAGCGAATTGTTGGATCAATTGCCGGATGGC GCTTACGTGCTGAATCTCGCGCGCGGCGTTCATGTTCAGGAGGCGGATCTGCTGGCTGCG CTTGATAGCGGTAAGCTAAAAGGCGCGATGTTGGATGTCTTTAGCCAGGAACCGTTACCG CAGGAAAGTCCATTATGGCGCCATCCGCGAGTCGCCATGACGCCGCACATTGCGGCAGTC ACCCGTCCGGCGGAAGCCATCGATTATATTAGCCGCACCATTACCCAGCTGGAGAAGGGA GAGCCGGTGACGGGGCAGGTGGATCGGGCGAGAGGATATTGATATCAACCCGGCGCGGGC CGGGTTTCGCTAAAAAACGCTGGCGATACCTGCTATCCTTGTCGGAAATGACTACAGGAG AGAGCAATGTATCCCGTTGACCTGCATATGCATACCGTCGCCAGCACTCATGCCTACAGT ACTCTGAGCGATTATATCGCGGAAGCCAAACGCAAAGGCATTAAACTTTTTGCGATTACC GATCATGGTCCGGACATGGAAGATGCGCCGCATCACTGGCATTTTATTAACATGCGCATC TGGCCGCGTCTGGTTGACGGCGTGGGGATACTGCGTGGCATTGAGGCGAATATCAAGAAT ATTAACGGTGAAATTGATTGTTCCGGAAAGATGTTCGACTCGCTGGATCTGATTATCGCA GGCTTTCATGAGCCCGTTTTTGCGCCGCATGATAAAGAAACCAATACTCAGGCGATGATC GCGACCATCGCCAGCGGCAAGGTGCATATAATTAGTCACCCCGGAAATCCAAAGTATCCA GTGGAGGTTAAAGCCATCGCGCAGGCGGCGGCGAAACACCATGTAGCGCTGGAAATCAAC AACTCTTCTTTTCTGCATTCGCGTAAAGGAAGCGAAGATAATTGCCGCGCGGTCGCTGCC GCCGTACGCGATGCGGGAGGCTGGGTAGCGTTAGGCTCTGATTCCCATACGGCCTTTACG CTTGGCGATTTCACCGAATGCCGGAAAATTCTGGATGCGGTGAATTTTCCGGAAGATCGA ATCCTGAACGTCTCTCCGCAGCGCTTACTGGCCTTTCTCGAATCACGCGGTATGGCGCCT GTACCGGAATTTGCCGAACTTTAATCGTTATTTACGGGAAGATATCAATGAATGAGTTTT CAATCCTGTGCCGTGTGCTGGGATCGTTGTTTTACCGCCAACCGCAAGATCCTTTACTGG TTCCGCTGTTTACGTTAATCCGTGAAGGTAAACTGGCGGCAAACTGGCCGCTGGAGCAGG ATGACATGCTGGCGCGTTTACAGAAAAGCTGCGATATCACGCAGATTTCCACTGATTACA ATGCGTTATTTGTTGGGGAAGAGTGCGCGGTAGCGCCATACCGCAGTGCGTGGGTCGAAG GCGCGGAAGAGTCTGAGGTGCGCGCTTTTTTAACGTCGCGAGGGATGCCGCTGGCCGATA CGCCTGCCGATCACATTGGCACTTTATTGCTCGCGGCCTCCTGGCTGGAAGATCAGTCTG CCGAAGATGAAAGTGAAGCGCTGGAAACCTTATTTGCCGATTATCTGCTTCCCTGGTGCA ATACCTTCCTCGGTAAAGTTGAAGCCCATGCCGTTACGCCATTCTGGCGCACTCTGGCGC CGCTAACGCGTGATGCGATAGGGGCCATGTGGGATGAACTTCAGGAAGAAGATGAAGAAT AATGTGATGTAAATCACCATTAACTGCAACGGGTTTTGCATCATTGCATAAAATGTGTGC GTGATCTCATTAATGTGCCGCTTTTCTGTTATGATGCGCGCCATGAACATACTTCTTTCT ATTGCTATCACTACGGGCATCCTTTCTGGAATATGGGGATGGGTGGCCGTCTCCCTGGGG TTACTAAGCTGGGCCGGTTTTTTAGGCTGTACGGCTTATTTCGCCTGTCCGCAGGGCGGC TTTAAGGGATTGTTGATTTCCGCCTGTACGCTGTTAAGCGGTATGGTGTGGGCGCTGGTC ATTATTCACGGTAGCGCGTTGGCGCCGCATCTGGAAATTGTCAGTTACGTGTTGACGGGG ATCGTGGCATTCCTGATGTGTATCCAGGCAAAGCAGCTATTGCTTTCTTTTGTTCCGGGA ACATTTATCGGCGCCTGCGCGACATTTGCAGGGCAGGGTGACTGGCGGTTGGTATTACCG TCGCTGGCGCTGGGGCTAATCTTTGGCTATGCCATGAAAAATAGTGGGCTATGGCTGGCA TCACGCCGCGAGCAACATTCAGCGAATACGGCGGTCACAAAATAAAAAAGCGTGGGGTTT TCCCCACGCTTTGTCGTATTCATCAGGATTCTGGCGGTACTGACAGCTCACGGTATTTCA CCAGAATATCATTTTGCCTGTCCGCTTTATTCTGCAAATCCCACAGTCCGCGATCGATAC CATCATTAATGAGGAAGATAACGCCGGTTTCAATGGCTGACATCAGACACAGCATCACCG GTTCGTTCGAGGTATAGCCGATTTCGCCTTCCAGTAAGCGCTGGTAATCAATAAAACGGA ACACGCCTGCCTGTACTTCATAGGAAAGGATCGTTTTACTGGTGTTCACCGAAGAAAGGA TCTCGCCCGTACTGACGTTAACCACGCGCAGGTTGACAGCAATCTGATCCAGCTGATACT GCGTATCGGCGCCAATACCGAAATATCTTGCGCCGACCCCGCCGGATTTGACGTTACTTT CATAACCAATAATAGAACCTTCCACCATAATATTTGCCGCCGTCAACGACTGAAGCGGGA TACGGTTATTCATCGCCACGGTGCCGTTTTCCTGGGCTGCGCGAATAATTTTCCGTTCAT TCAAAAGATTCTGTAAGCCTTGTCGTTCTAGTGGGATAAACCAGCGCGAATCTTTCAGCG CGGTGACCAACATAGCGGTGGCGCTCTGCGGCACAGCCGTGGAAAAGTTACTTGCCGGGT AAGGTTTAAATTGGCCCGTTTCATCCTGAATGTTATATACCGAAACAAAGATCTTACCGG TGGGAGCAGGTAAGTGCGTCAAATCTTTGTAACTTTGTGCGCGGGGCATTAATGTCGGTT TCGCAGCTTGTTTCGGCGGGGCAGTTAAGCATCCGCTCAACAATAAAACGGCAACCAAAA TAAGTAAGCGCGGCATGATTTATATCCTTTAGTGACTGTAGCTTAAAAATCGGTTGACTG AGTTTGTAAACCTGACACTTCGATGGTCGAGGTTCTTCCCGTTTTTCTGTCCGTGACGTT GAGCTGGAGCTGTCCGTCGCGATTAGCGATATCGATAATAAAATCATTGGTCACCATACG TCCTGGTTTTCCGGTATTAATATTGGTCAACAAGCCGCCCAGAATTTGCGATTGAATAGC CTGCGTAAAGTTATCCAACGCTGAGGGGGTCTCGATACCAAAATCGTTATCATAAGCGGG GTCTTTATATGAATTTTGCGCCTGGGCGCTATTCAATAAAAAGGAACCGTTATTGGGGTT TCCACCAAAGTTAGGATTACGGAACTGGAACGTCATATTTCCAGCCCAGGTTAATGGCGA AAAAAGCATGAGCAGCACTACTGCATGTTTAACACGCATGACAGCCTCCGGATAAAAATC ATGTTTTAGAATTCATCACGCGCTAAATCACTCGTACTTAATAGCGTTTGATCTATTTGT CGGCGATTTAATGCTTCCTCTGTTTGCGCTAATGCGAAGACGACGGTTTTCTCGAAGTCT CTTTTCATTGGAAATAAAAAGGTCTGGAAAATAACGTCCTGATTTACCGTTATGGTGATC CAGCTTCCCCAACGCGCACTGGGTCTTTCATTAATGGTCAGATTGCCGGTGTATTCGCTT TCCCATTTGTCGCTGAATGCACGATAGAATTCATGTCCTATCGAAGAGACGGTATGGTCG GTTAACAATCCGGGAACCTCGACTTCAACTTCATTGGCATGCAGGTTTCCGGTAGCGAAC AGTAACTCTGCTGCTACAATCCAGGTCAGATAGCGTTTCATGGCCTTACCGCCTGAGATT ATCGTTTGCTCATGAAACTGCCTGGGTGCGATTTTTGACAGCTATCTTTTTGAAAAGATT ATAAAGATGTGTCTTAACCGTATTCTCGCTGATAAATAGCGACCTGGCGATTTCATTATT AGAGGCACCAATACGTAACTTATTGAGGATCTCTTTTTCGCGATGAGTGAGTAATGCGGA CTCGGTGCTGTTGTAGCGGTAATTTCCTGAGTGTGTAATCAGGTAACTGGCTAATTTTTG TGAAAAATAGCATTCGCCCCGCAGAATACCCTGTAATCCGCTGACCACGTGTTCCTGGTC TTCAGTGGCGTAAAACACGCCGTTAATATGAGGCCAGTTTTCAATTTCACGGTAGGGATA ATCGTCAGGGGTATTTAACAATAATGTTTTTATATTATTGTTTTTGCGGCTTAAATTATC CTGCCAATAGTGGATAAGCTTCTTATCCGCTTCCATCATATCCATTAAAACAATGCAACC GGCTGAGATATCTTCCAGAGAACGTTGAATATTATGCAGTTTTCCGGTTATGGCCAGCGA TTGCTTTAAATGTTGCAATAATGCCGTAGCTTGCAGAGATGGCTTTGTGATCAACAATAG TGTGTGACCATGACTACTATGGACTTCATTAAACATGATGAAACTCCACTTTTTTTAATC GCACATCTGACAGCTGCCCCCATAAAATAAAGGCACCAGAAGTACTGACAGATGTTGCAC TGCTGTGGGTTGAAATAGCCCATTATCCAGAAAGAGAAAAATATTTACGAAAATACTTTT AACTGTTTTCAATCTAGCCATTACAAATCTTAAAGCAAGTGTTAAACTTGTAACAAGATG TAAAAATATATATTAAAATGTTGTTTTTGGGTTTTTTTGAAGTTTAGATTTGATAGTAAA GTTGTACATTTCGCTGTTATTGCATAGATTTAAAAAATCATACAAATTATAATAATTCAT TGATTTTTAATCATTTTAATTATTGTATGTCATGTTTTGATTTTATTTTTTCTTAAAATT TGAGACGTGGCATTAACCTGGACAGCACAAAGACAAAAAAAAACGAAGTGTGTCACGTCT TGTGCGTATTGCCCCCCATGGGAAGCATAAGAACATCCCCATGGCGGCATAACACACACC AACACTTCATTTTTTAGGTGCGCGATACACTATCTTCTGTGGCCAAAAATCAATTATAAA AAATCACATGGCTATCGTTTTATTAGCACTTTGGTATGAGCTTAAATAACAAAATACCAC GCGTGGGTGAGTTATTAAAAATGTTTCCACGGACATACTCTTCATCGTAACGACGCGTTA ACAAAAAACGCATGTCGCTAACAAGGTAATAGATAATTTTCGCTATGTACGACCAGGTCC AGGGTGACAGCATGAAAAACAAATTGTTATTTATGATGTTGACAATACTGGGTGCGCCTG GGATTGCAACCGCGACAAATTATGATCTGGCTCGTTCAGAGTATAATTTTGCGGTAAATG AATTAAGCAAGTCTTCATTTAATCAGGCGGCCATTATTGGTCAAGTCGGCACGGATAATA GTGCCAGAGTACGCCAGGAAGGATCAAAACTATTGTCCGTTATTTCACAAGAAGGAGAAA ATAATCGGGCGAAAGTCGACCAGGCAGGGAATTATAACTTTGCGTATATTGAGCAAACGG GCAATGCCAACGATGCCAGTATATCGCAAAGCGCTTACGGTAATAGTGCGGCTATTATCC AGAAAGGTTCTGGAAATAAGGCCAATATTACCCAGTACGGTACGCAGAAAACAGCAGTTG TAGTGCAGAAACAGTCGCATATGGCTATTCGCGTCACCCAACGCTAATACCGTTACGACT TTTAAATCAATCCGATGGGGGTTTTACCATGAAACTTTTAAAAGTGGCAGCATTCGCAGC AATCGTAGTTTCTGGCAGTGCTCTGGCTGGCGTCGTTCCACAATGGGGCGGCGGCGGTAA TCATAACGGCGGCGGCAATAGTTCCGGGCCGGATTCCACGTTGAGCATTTATCAGTACGG TTCCGCTAACGCTGCGCTTGCTCTGCAAAGCGATGCCCGTAAATCTGAAACGACCATTAC CCAGAGCGGTTATGGTAACGGCGCCGATGTAGGCCAGGGTGCGGATAACAGTACTATTGA ACTGACTCAGAATGGTTTCAGAAACAATGCCACCATCGACCAGTGGAACGCTAAAAACTC CGATATTACTGTCGGTCAATACGGCGGTAATAACGCCGCGCTGGTTAATCAGACCGCATC TGATTCCAGCGTAATGGTGCGTCAGGTTGGTTTTGGCAACAACGCCACGGCTAACCAGTA TTAATTTAGCGTCTGCGCTAATAAAAAAACAGGGCGTAAGCCCTGTTTTTTTTCGGGAGG AAATTATGCATACTTTATTGCTCCTTGCCGCACTTTCAAATCAGATTACGTTTACCACGA CTCAGCAAGGCGATATTTACACGGTGATCCCTCAGGTCACATTAAACGAACCCTGCGTCT GTCTGGTGCAAATTCTCTCTGTGCGCGACGGCGTCGGGGGACAAAGCCATACACAGCAAA AACAAACGCTATCTTTACCTGCTAATCAACCGATTGAGTTGTCTCGTCTTAGTGTAAATA TATCTTCAGAGGACTCGGTTAAAATTATTGTTACTGTTTCGGACGGACAATCACTGCATT TATCACAACAATGGCCGCCTTCTGCACAGTAGTTTTTGATGGTGGCGGAAATGGATTGGC TGACCTGGGTATTAAAGAGGCGATAAAAGCGTCTCATCGTCTCGGCATGTCGCTAAAAGG TAACGCCGAACCCTCGAGGATGACTAATCATTGAGGAGTTAACATGTCCGTAATCAAGAA AAATATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATCCATTCTGCGGTAGGGCA ACAAACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATTGTTGAGCCACTGTGCGA TATTTCTACTCACGCCGAAAATATTGATTTAACCTGCCTACGCGAAGGTAAAAAGCAAAT GCACCGGATAGACCTTCGGCAGGCATCTGGATTACCGCAGGATATTCAGTCCATTGCGAC GGTACGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTGATGAATATTGAGTACCG TTAACGGCGGTGTCATAGATATAAAAAGAGCGACTCTGTTGAAAGCCCTGCTGTACACTT TGCAGATAAGGTGAGACAAAAGGGGGGGGTTATGACATCACGTCTTCAGGTCATACAGGG TGATATCACTCAACTTAGCGTCGATGCGATTGTGAATGCCGCTAACGCATCATTAATGGG CGGCGGTGGCGTAGACGGCGCAATTCATCGCGCGGCGGGGCCGGCATTGCTGGACGCCTG TAAACTCATCCGTCAGCAACAGGGCGAATGTCAGACGGGACATGCGGTTATCACGCCTGC TGGCAAGCTTTCGGCAAAGGCGGTTATTCACACAGTGGGGCCCGTCTGGCGAGGCGGCGA ACACCAGGAAGCTGAGCTACTCGAAGAGGCATACCGGAATTGTTTGCTGCTTGCCGAGGC GAATCACTTTCGTTCCATCGCTTTTCCGGCAATCAGTACCGGCGTTTATGGCTATCCACG CGCCCAGGCCGCTGAAGTCGCCGTCAGGACGGTTTCAGATTTTATTACCCGTTACGCTCT GCCTGAACAGGTATACTTTGTCTGTTATGATGAAGAAACTGCCCGGCTTTACGCAAGATT ACTTACTCAGCAAGGCGACGACCCTGCCTGATAAAACACGCCTGGAGCGTGCCGTTGAAC CGCTATGCGCGCGCCATCCCGGAGAGTGCGGCATTCTTGCGCTGGATAACAGTCTGGACG CTTTTGCCGCCCGCTACCGCCTGACCGAAATGGCGGCGCGGACGCTGGATGTGCAGTATT ATATTTGGGAAGACGATATGTCCGGGCGGCTGCTCTTTTCGGTTCTGCTGTCGGCGGCGA AGCGCGGCGTTCATGTTCGTCTGCTGCTGGATGATAACAATACGCCTGGTCTGGATGATA CGTTGCGCTTGCTGGATAGCCATCCTAATATCGAAGTTCGTCTGTTTAATCCTTTCTCTT TTCGTACGCTACGCGCGCTGGGATATTTGACGGATTTTGCGCGGCTGAATCGGCGGATGC ACAATAAAAGTTACACTGCCGACGGCGTAGTGACGCTGGTCGGTGGGCGCAACATCGGCG ATGCCTATTTCGGCGCTGGCGAGGAGCCGCTATTTTCCGATCTGGACGTGATGGCCATTG GCCCGGTGGTCAATGATGTCGCCAATGATTTTGAACGTTACTGGCGCTGTAGTTCAGTGT CGACATTGCAGCAAGTATTATCCCTTTCTGAGCAGGAACTGACGCAGCGTATCGAACTTC CCGAATCCTGGTATAACGATGAGATCACCCGCCGTTATCTGCATAAGCTGGAAACCAGCC AGTTTATGGCGGATCTCGATCGCGGAACGTTGCCGCTGATTTGGGCAAAAACACGCTTGC TTAGCGATGACCCTTCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTTCTTCCGCAGC GATTATTTGACGTGATGGGGTCGCCGACGGAGCGTATCGACATTATTTCCGCTTACTTTG TCCCTACGCGCGCAGGCGTGGCGCAGTTGCTTAATCTGGTCAGGAAAGGTGTGAAGATCG CCATCTTAACTAACTCTCTGGCGGCCAACGATGTGGCGGTCGTTCACGCAGGGTACGCGC GCTGGCGCAAGAAATTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAACCGACCCGCG AACATGAAACCGCCGTACATGATCGCGGACTCACCGGGAACTCAGGTTCCAGCTTACATG CTAAAACGTTCAGTATTGATGGTAGTAAGGTGTTTATCGGGTCGCTTAATTTTGATCCCC GTTCAACGCTTTTAAATACCGAAATGGGCTTTGTCATTGAAAGTGAAACGCTGGCGACGC TTATTCATAAGCGTTTTACGCAGAGCCAACGCGATGCGGCCTGGCAACTGCGGCTGGATC GCTGGGGACGAATTAACTGGATCGATCGTCAGCAAGAAGAGGAAAAGGTGTTAAAGAAAG AACCCGCTACGCGTTTCTGGCAGCGAGTTCTGGTACGGTTGGCGGCAATTTTACCTGTGG AATGGTTGCTGTGAACCCGCGCGCGGAAAACTACCCGATCGCGGCGCGGCTTTCTTGTTT TACCGGCGGTTTACCTGAAAAGAGAAATTTCAGGAGCGGGATGCGTAAATGAATTTCATA CAGAATTAACGCAATACCCATAACAAATATCAGCCCGCACAAGAACCCGATCAGGTTGGA GGAGATATGCGGTGTAATATACGCGCCAAAGAAAAGCGTTAAGGGATGATGCACCAGATA AATAAACAGCGAAGCATTCACGAAATAGGTGACACGCGCGGACTGAAAGTTTAACAAGCG ATGCCCCAGTGAAAATACCACGTTCACCATCCATAGCCCCATTACCATCGTAATCACGGA TTCGGTTTCGTACATCCAGGCGTCGCCGCTCCCATAACGTTGATTCAGCAGATACGCGAT AAAAGCAACGGCAGCGCCTAAAGTGCATCCGCGTGAGGGCGTGGTGAAGCGCGCTTTCAG ATCGGGGTGAATGAAGGCCAACGCGCCGAGAATAAAAAACGGCACATAAAATAGCGTTTG CATCACAATAAAATTGAACATGCCGTCACTGAGGATTGCCGGATATACGATGAATATAAT GCGCCTGATAGCAGCGTACGCCACCCCCAGCAGGAAAAAAATAAGCGAAAGTTTGGCCAG CGAAATAGCGGCGGGACGAGGCTTGCTTGTTTCCTGCCTTTTTTGGAACCAGGTAAAAAT CCCGATGCTGACGGTGGTTAATATCACCAGCACCAGTAAAAACCACAGATGTGAAATGAG TTCCCACGCTAACGTATTATATTTTTCATAGGCAGAGAGTGTAGGCCAGTTCTCTGTTTT CTCTTTGACATATTGCAACAGGATAAATTGCGGCAAGGTAAGCAAAGGGATTGCGGTAAG CATGGGAATACCCACACGTTCTACCCGTACTTTCCACCAGTGTTTTAATGGATAACGTAA AAATAACATGTACGAAAAATAACCAGAAATAACAAAAAACACCTGCATACGAAAAGCGTG GATAAAATCGTTAAACAGGGTTAGCCACCACGATGGCGCGGCGCTATTGACATGCCAACT GTGAGTGGAATAGATCAACGAGATATGAAAGGGAATCCCTAACAACATCAGCCATGCGCG GATAGAGTCAAGAAAATATTCACGCGGCGCGGGTACAGAGCTCATATAAGGTCACGTATT CTCAGATTTTTCACCTTATCCATAAGGCGAATTATAGTTACATTCGGTAGCAACCCTACA CCAACTCCGACAACCTGTCTCCAGGATAAGCACGCAAAGTGAAAACAGGCGCGGGAGGTG CTTAATCCATGAGCCAGCGCGCTGAACAAAGCCTGGATTCAGTTGTCGTAATGCCTGATT ATCCATTAAAATGGATCGGATCGATATAAGCACACAAAGGGGGAAGTGCTTACTTATTAT GAAACATAAACGACAAATGATGAAAATGCGTTGGTTGGGCGCAGCTATTATGTTAACGCT CTACGCATCATCGAGCTGGGCGTTCAGTATTGATGACGTGGCAAAACAAGCTCAATCTTT AGCCGGGAAAGGCTATGAGGCGCCTAAAAGCAACTTGCCCTCCGTTTTCCGCGACATGAA ATATGCGGATTATCAGCAGATCCAGTTTAACAGCGATAAAGCCTACTGGAACAACTTAAA GACCCCTTTTAAGCTCGAATTTTACCATCAGGGGATGTACTTCGATACGCCGGTCAAGAT TAACGAAGTGACGGCGACGACGGTCAAAAGAATCAAATACAGCCCGGATTACTTCAATTT TGGCAATGTTCAGCACGATAAAGACACGGTAAAAGATTTAGGCTTCGCCGGGTTCAAAGT CCTGTACCCCATTAACAGTAAAGATAAGAACGACGAAATCGTCAGTATGCTTGGCGCCAG CTATTTCCGCGTTATCGGCGCAGGCCAGGTGTATGGCTTATCTGCGCGCGGCCTGGCGAT TGATACCGCCTTACCATCTGGTGAAGAGTTTCCCCGCTTTCGCGAGTTCTGGATTGAGCG TCCAAAACCCACCGATAAGCGTTTGACCGTCTATGCATTACTGGATTCTCCGCGCGCGAC CGGCGCTTACCGTTTTGTGATCATTCCTGGCCGCGATACCGTGGTGGACGTGCAGTCAAA AGTCTATCTGCGCGATAAGGTGGGCAAGCTGGGCGTTGCGCCATTAACCAGTATGTTCCT GTTTGGGCCAAACCAGCCGTCGCCGACGACCAACTATCGTCCGGAATTGCATGACTCGAA CGGCTTATCCATTCATGCGGGTAATGGCGAGTGGATTTGGCGTCCGCTGAACAATCCAAA ACACCTCGCTGTGAGCAGCTATGCGATGGAAAACCCTCAGGGATTCGGCCTGTTGCAGCG TGGTCGCGAGTTCTCGCGCTTTGAAGATTTAGACGATCGCTATGACCTGCGTCCAAGCGC CTGGATTACCCCGAAAGGCGACTGGGGCAAAGGTAAGGTTGAACTGGTTGAAATTCCGAC CAATGATGAAACCAACGATAACATCGTCGCTTACTGGACTCCGGATCAACTGCCGGAACC GGGTAAAGAGATGAACTTCAAGTACACTCTGACCTTCAGCCGCGATGAAGATAAACTTCA TGCGCCGGATAATGCCTGGGTGCTGCAAACACGCCGCTCAACGGGCGACGTTAAACAGTC GAATCTGATTCGCCAGCCCGACGGCACTATTGCCTTTGTGGTGGATTTCGTTGGCGCCGA CATGAAAAAACTGCCGCCGGATACGCCCGTCGCTGCACAAACCAGCATTGGCGATAACGG TGAAATCGTTGACAGTAATGTACGCTATAACCCAGTCACTAAAGGCTGGCGTTTAATGCT GCGCGTGAAAGTCAAAGACGCGAAGAAAACCACGGAAATGCGTGCCGCATTGGTGAATGC CGATCAGACGCTAAGTGAAACCTGGAGCTACCAGTTACCTGCCAATGAATAAAACAACTG AGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCATTGCCGAAAACTGACA TCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTACTCGCGAGAAGACGATT CACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCGGATTCATTGGCGAAGG GGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCTATGCCAAAAGCGACGC GCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGCCGTTTCTGGGATCGCC TGCGTGGGCGGGATGTAACGCCGCGCTATGTTTCTCGTCTGACAAAAGAAGAGCAGGCGA GTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATTTTGTTAATTTTGACTC TGGCGCAAACCGTCGTCGCGACCTGGTATATGAAGACCATTCTGCCCTATCAGGGATGGG CGCTCATCAATCCTATGGATATGGTGGGGCAGGATATTTGGGTCTCCTTTATGCAGCTCC TGCCCTACATGCTGCAAACCGGTATCCTGATTTTGTTTGCCGTGCTGTTCTGCTGGGTGT CTGCCGGATTCTGGACGGCGCTGATGGGCTTCCTGCAACTGCTTATCGGGCGCGATAAGT ACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCGGAACACCAGACGGCGC TGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCCGGTCTGCGCGCGACCT GGGAGTCCGTTAAAGCCACAGGCAACGCCGCGCATTTTGACGTCTATATCCTTAGCGATA GTTATAACCCGGATATCTGCGTGGCGGAGCAAAAGGCGTGGATGGAGCTCATCGCGGAAG TGCAGGGCGAAGGCCAAATTTTTTACCGTCGCCGCCGCCGCCGTATGAAACGCAAAAGCG GCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGCTATATGGTGGTGCTGG ACGCGGACTCAGTGATGAGCGGCGAGTGTCTGAGCGGGCTGGTGCGCCTGATGGAAGCGA ACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGGATGGATACTCTGTATG CCCGCTGCCAACAGTTCGCGACCCGTGTTTATGGACCGCTGTTTACCGCCGGGCTGCACT TCTGGCAGTTGGGGGAGTCGCACTACTGGGGGCACAATGCCATTATCCGCGTGAAGCCGT TTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCGTTCGCCGGATCGATTC TTTCCCACGACTTTGTGGAGGCGGCGCTAATGCGTCGGGCAGGGTGGGGCGTCTGGATTG CCTACGATCTCCCCGGCTCCTATGAAGAGCTGCCGCCAAACCTGCTGGATGAGCTTAAAC GCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTGTTCCTGGTGAAAGGAA TGCACCCGGTGCATCGCGCCGTGTTCCTGACCGGGGTAATGTCATACCTGTCCGCGCCGT TATGGTTTATGTTCCTCGCGCTTTCTACCGCGCTGCAGGTCGTTCATGCGTTAACAGAGC CGCAATATTTCCTTCAGCCGCGCCAGCTTTTTCCGGTCTGGCCGCAGTGGCGTCCGGAAC TGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTGCCGAAGCTGCTCAGTA TTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTCTGGCGCGTTACGCTGT CGCTATTGCTGGAAGTGCTGTTCTCCGTGTTGCTGGCGCCGGTGCGTATGCTGTTTCATA CCGTGTTTGTGGTCAGCGCGTTCCTCGGCTGGGAAGTGGTCTGGAACTCACCGCAACGCG ACGATGATTCTACGCCGTGGGGAGAAGCCTTTATGCGTCACGGCTCTCAACTGCTGCTGG GGCTGGTCTGGGCGGTGGGTATGGCGTGGCTGGATTTACGCTTTCTGTTCTGGCTGGCGC CGATTGTCTTTTCGCTGATTCTGTCGCCATTTGTTTCGGTGATCTCCAGTCGTTCAACGG TAGGATTACGCACCAAACGCTGGAAGCTGTTCCTGATCCCGGAAGAGTATTCGCCGCCTC AGGTGTTGGTCGATACCGATAAATATCTGGAGATGAATCGCCGCCGTATTCTGGACGATG GCTTTATGCATGCGGTATTTAACCCGTCGCTTAATGCGCTGGCGACCGCGATGGCCACCG CGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGTCATGTGGAGCAGGCGC TAAACGAAACGCCGGAGAAACTGAACCGCGATCGGCGTCTGGTTTTGCTCAGCGATCCGG TGACGATGGCGCGTTTACACTATCGGGTCTGGAATGCGCCAGAGAGATACTCTTCCTGGG TAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAGGGACGAACATCGTCAG CGGGATAAGGTCTTCAGGTCTGGAGTGAGGTGAAAAATACCGGCGTGATGCCGGTATTTT TATAGTGAAATGAGGTATCAGGTGCGTATATTCGCGGTGAGCATAATGGTGATTACCCTG AGCGGCTGCGGCAGTATTATCAGCAGAACGATCCCCGGACAAGGACACGGCAACCAGTAT TACCCTGGCGTGCAGTGGGATATGCGTGATTCCGCATGGCGCTATATCACTATCCTCGAT CTGCCCTTCTCACTGATCTTCGATACACTGCTACTGCCGCTCGATATTCACCACGGGCCT TATGAGTAATTAACGCTCATCCCATTCGTCTGCCGCAGTACGGCCTTCCTCGGTATCAAG CGGGGGTTCAAGCTGGAATTCCCCTTCATCCCATTCATGCAAAGTATTCTCTTCCTGCCA TTCCTGGCGGATCTCTATCTCATCATAATCGCCGTCAAACACGCTCTGTGCGGCTTCACC ACTCAGCATCGGCAGACATTCGCCATCTTCACCTTCATCGGCGAAAAATTCGACCTGCCA CATGATGTCCCCATCCTGCAGTACATATTTCTGAACGTTGAACTGCTGCACATTCGCTTC GTCTTGTTCGAGGCCTGGATGGTCAGCCAGAAATTCTTCCCGGGCTGCATCGATAGCTTC TTCCAGCGTGGCATACATGGTCATCAGTGTCTCCCTTTGATTTGACGAGGTATTTAGGGA AAGAATAGCTGATTCTGTGATATTGCAAGTATGAAAGCGCAAAAATCATTCTATTGCCAG TCTGCGCCGTCGTAAGCTGTTCCATGAATAGATAGCATTGAACAACACCACGCCTGCCGT GACGCAGAATACGGCGCGGAAGCCATAGCTCGCGGAAATTGCGGCACCCATGAGAGGGCC GGTGACGTTGCCGATATCGCGGAAAGATTGGTTGTAACTGAATATGCGCCCGGCTATCTG GTTGGTAGAGTTGTAAACCAGCAGAGTTTGAACGGCTGGCAGCAGCGCGCCATCCGCCGC GCCAAGCAGAAACCGCAATAGCGCGAGCTGCCACGGCGTTTGCACAAAAGACATTGGAAT CAGCAGCAGTACGGAAATAATCAGCGCGACGATAAGGATCTTTTCCGGGCCAATTCTGTC GCCGAGCTTGCCGAGCCGGGGGGCGCTAAGTAATGCCGCCACGCCGGGAACGGACGCTAT CATCCCGCTAATGAACGCAATATTACTGACATTTCCCGCGAGTTCGCGCACATAGAGCGT CAGGATGGGCGCAATAGACCCCGTCGCCACCTGAATAATCAGCGTGGTGACAAACAGGCT TAACACCAGGCGGGGATTTTTTAACGAGGCGACCACTTCCCGAACGTGAAGCATCTCTTT TTTGCTCACCGGCAGGAAATTCTCGCGAATAAAAAAGAAGGTGAGCAGAAAACAGATAAA CAAAACGCTGGCGGTAATAAAAAAGACCGGGCGAAGGCCGTAATGGTCGGCGAGCAGACC GCCCGCAAGTGGGCCAAGCAGAGCGCCGCTGACGCCGCCAGTAGAGAGCGTCCCTAACGC CCAGCCGCTTTTGTGGCGCGGCACCTGAGTGGCGATGAGCGCATTGGCGTTGGGAATAAA TCCGCCCAGCAGGCCTAATAACGCGCGGAGGATCAGAAATTGCCAGATATTTTGCGCCAT GCCCATTAACAGCATCACAATGGCCATGCCGAGAGCGGAACGCAACAGTATGATCTTACG CCCTTTACGATCCGCCAGACCGCCCCAAAAAGGGGAAGCGATAGCTGAAAAGAGGAACGT AATACTAAAGACCAGCCCGGACCACATGTTGAGCGCGCTATGGCCTGTTACGCCGAGTTG CTCAACGTAGAGAGGGAGAAAAGGCATGACCAGACTGAATGCCGCGCCGGTTAAAAAACA GCCCAGCCAGGTAACGGTTAGATTGCGTTTCCAGTTTATGGGGACATCAGAGGGTGACAT AGTGTTCCACAGTATGATGCGCGTTTTGCGCTATCATCAATTTAATTATGAGCGTACTAA TTATAATTATGCGCCGACCTTACCAGCCTCGCAATGTGGGGAGCTTTTAAAGCTAAAAGA GGGGAAAAATTGCAGCCTGACGGCTGCAATCCTGTCAATAGCGCGACGGTACGCCTTCAG GGCGAGTTTTAAAGCGGCGATGCAGCCACATATACTGCTCTGGCGCCATCATAATGCACT GCTCAACAATCTTATTCATCCATGCGGCAGTCGCTTCTGCGCTCTCCAGCGGAGGCGAAT ATTCCGCAGGAAGGATGATCAGTTCGTAGCCTTTCCCGTCGGGTTTACGGCGAGGCACGG AGGGGATAATACAGGCTTTAGACATGCGCGCGAGCATCCAGGTACCGGAGGTCGTAGCGG CCTGGTCGACGGCGAATAACGGTACAAAGACGCTGGCGCGCGGGCCATAATCGTGATCCG GCGCATACCAGATCAATTCGCCGCTTTTCAATGCCTTAACCATACCTTTCAGATCTTTGC GATCCAACATCGATTTATTGGAGCGTAAGCGCCCCCAGGTCTGTAACCAGTCGAGCAACG GATTATCATTCGGGCGATAAACGCCGATACCCGGGTTATGCATACCAAACATGCGGGCGC CAAACTCAAGGGTAAGGAAATGTATTCCTACCAGAATGAACCCCAGCCCCTGCGCCTTAA CTTCACGGATATGCTCCAGACCGCTCGCTTCCATCCAGCGGTTCACTCGCCGATCGGGCC AGAACCAGGCCATGCCGGTTTCCATCACGCCCATACCGACGGATTCAAAGTTTTTGACCA CCATGGTGTGGCGTTCCTGCGCGCTCATTTCCGGAAAGCATAATTCAAGGTTGCGATAGG CGATTTTCGCGCGGCGTTTCATTACGCGTCGCGCCAGGTGGCCCAATGCGCAACCCAATT TATAGATGACCGGGTAGGGGAGTTGCACGACCAACCAAAGCGCGCCTATACCCAACCAGG TTAACCAATAGCGCGGGTGCAGTAAGGCCACGGAGAACTTAGGCAACTTCGTCATTTCTA TCCTGTCTTTCAACGAACAATTCTCCGTATTCTCGCATCTTTTTGCGTTGAGCAAAAATA TGTAGCAGGAGAGTGGCGATTAAATCGACAATTGTTGTTAATTATTTAGCGTAAAGCAGG AAATGTAGCGCAAAATGTGTGGATGTAAATTGGCGAGACTTGCCTTATCATGCCTGCCCA CTTTATTTTTTGCTGATTGCAGGATACGTACACCATGCCAGTGTTACACAACCGCATCTC TAATGACGAGCTGAAAGCCAAAATGCTGGCGGAAAGCGAGCCGCGTACGACAATTTCTTT TTATAAATATTTCACTATCGCCTCGCCGCAACAGACGCGGGACGCGTTGTATCAGGTGTT TACGGCGTTGGACGTTTTTGGTCGCGTTTACCTGGCGCATGAGGGCATCAATGCGCAAAT CAGCGTGCCGCAAAGCAAGGTTGAGACCTTTCGTCAACAGCTTTATACGTTCGACCCCGC GCTGGACGGGGTGCGTTTAAATATCGCGCTGGAGGATGACGGAAAGTCATTTTGGGTGCT GCGTATGAAAGTTCGCGACCGTATCGTCGCTGACGGTATTGACGATCCGAGTTTTGACGC CAGTAATGTCGGCGATTATCTGAAGGCGGCAGATGTGAATGCGATGCTGGACGATCCTGA CGCGGTCTTTATTGATATGCGCAACCACTATGAGTATGAAGTCGGCCATTTCGAAAATGC TCTGGAAATCCCGGCGGATACGTTTCGTGAACAGTTGCCAAAAGCGGTTGAAATGCTGCG GGAACATGCAGATAAAAAGATAGTGATGTACTGTACCGGCGGTATTCGTTGTGAGAAAGC CAGCGCCTGGATGAAACACAACGGTTTCAATAAAGTCTGGCATATTGAGGGTGGCATCAT TGAGTACGCCCGTCGCGCGCGCGAGCAGGGGCTTCCCGTTCGCTTTATCGGCAAAAACTT TGTATTTGATGAGCGAATGGGCGAGCGCATCTCGGATGAGGTTATCGCGCATTGCCATCA GTGCGGCGTGTCCTGCGATAGCCATACCAACTGCAAAAACGACGGTTGCCATCTGCTGTT TATCCAGTGTCCGCAGTGCGCCAGTAAATTTAACGGCTGCTGTAGTGAACAATGCTGTGA AGAGTTGGCCTTGCCGGAGGAAGAACAGCGCCGACGTCGCGCGGGTCGTGAGAACGGCAA CAAAATTTTTAATAAATCGCGGGGTCGGCTTAATAGCAAACTGAGCATTCCCGATCCGGC TGAGTAATATTTTGCCGGATAGCGGCGTAAAGGCTGCTATCCGGCATTTCGCCAGGCGTT ACTTCTGCTGAACGCCTTCTACTGAGATGATAAGCTCCACCTCTTGTGAGGCTGGGCCGA GATCGGTAGTTATATTGAAATCTTTCAGCTTAATTTTTCCTTCGGCCTCAAAGCCCGCGC GCTTACCGCCCCACGGATCGTCGCCCTGGCCCATCAGCTTCGCTTCCAGCGTCACCGGTT TAGTCACGCCATTGAGCGTCAGATTGCCGGTAATATCCAGTTCATCGCCCTCTTTTTTCA CGCTGGTAGAGGTGAAGGTTGCCTGCGGGAATTTCGCAACATTAAGAAACTCCGCGCTAC GCAGGTGTTTGTCACGTTCGGCATGGTTAGTGTCGACGCTATTGGTGTTAATGGTCACAT TCACTTTGTCTGCTGACGGATTTTTTTCGTCAAAAGTGAACGTGCCGTCGAAATCTTTAA AGGTGCCGTATAGCCAGCTGTAGCCCAGATGCTGGATGCGGAAATTGACGAACGCATGTT GGCCTTCTTTATCAATTTTATACTCCGCCGCCACGGCGGAACCGGTCGTGAATAACAAGG ATGCGAGGGTGAATCCCAGCAGGTTTTTTTTCATTTTTGAGCTCCATAGTCAGATGACGA CATTCCTGTCATACGTTTCAGTGTGTCGTCTTTATCGATGAAATGGTGTTTTAGCGCCAT AACCCCATGCGAGAGCGAGATAATGACCAGCGACCAGGCAAACCACAGATGCAGTGTTCC GGCGATGTCAGCCTGCGCGCCCGCGTCCGTAAGCGTGGCCGGAATCTCAAACCAGCCAAA GACGCTAATCGGTTTACCGTCGGCGGTGGAAATCAGGTAGCCGCTAATGATTATCGCAAA GAGCAGGAGATACAGAAGGATATGACCCGCGGCGGCGCCAATGCGCGTTAAACGGGAATA GCTGGTCAACGCAACGGGCGGCGGAGAATAAAGCCGCCAGATAATACGCACGATCAGCGC CATCATCAGTAACATGCCAATACTTTTATGTATTTCCGGCGCCTAGTGATACCAGCCGTC GTAATAACTGAGCGTGACCATCCATAAACCCAACGCAAACATGCCATAGACCACTAGGGC GGTCAGCCAGTGGAGGGCGGCGGAAACTACGCCATAACGTTGTGGAGTATTTTTAAATTG CATAAACACACCAATGAATATTTCACGAGAGAATGAAAATGGCGTGGAAAAGCGCCGAAT GCAACTTATAAATAAGAATTTGAATGATATTTATTTTTATTTCAATAATTTTGATGTTGT TTGCGATTCAGCTTCAGAAGTTTCGAGATATTTCACTCCTGTAACCGCACAACGGCAGGA GTTGGCATTATTGCCGTGCTTCAACATTATGAAATAAAAAGTGAGGAACTTTCAGGAAGT GTTAGTTAACGTCAATGAAAAGCAATCAGAAGAAAAGGAGATAAACAATATCCATCACCG CCAGCAGCGACCAAAGAATAACGTAAAGCATGAAATGTTCGCGAATATTATTCATCAGAA AATGAAAGAGACGACGCATAGCTTACCTTAATAAACAGCCCCTTTACGGGGCCGACAAAT TATTGGCTAAAACGGGAAAGCCGGAACGGCGTCAGATCAAAGGAGGGCGTTTTTCCCAAC GCAAAATCCGCAGCGATTTCTCCTAACACCGGGGCGAATTTAAAACCATGTCCGCTGAGT CCAGTGATGACAAGCGTATTCTCATGGCCAGGCAGCGTATCGATAATAAAATCCTCGTCC GGCGAATTATCATAGGTACATGCCGCCCCATGTAAACAACCGCCGATACCCGGCAGTACG TTACGCAGGAAAGGAAATGCTTCCGCGCCATCGCTGGCAACGGCGGCAAAGGGCTTGCGC TCTTCCGGTGCCTGTATTCGCTGCCCGCCATTGTGTTTGCCGATTTTTAACTCGTCGTTC TCCGCCGGGAAACCGTAATAGTGATCGCCGTTGGGCATTTCGCCGGTAAAGGCCGGAAAG CGGTTTTTAGTGCTGTAACGTCCATCCGCCTTAAACCAGGCAAAAACTTTACGTACGGGC TGAACGGGCAGCTCCGGTACCAGCGTTTTGACCCAGGTGCCCGCGCTAATCAGCGCTTTG CTGGCGTGGTAGCAGCCTTCACTCGTCTCTATCGTCACACCGTTATCATCATGGTGAATA TGGCTTACCGGGCTGTTGAATAGCTGTGCGCAGCCTGCCTCTCGGGCCAGACGAAGCCAT GTGGTAATGGCTAATTCGCTGCGCAGGAAACCGGAGTCAGCTTCAAACAGCCCGATATAA TTATCGGGCACGCGAATTTCCGGCCAGCGCGTCATGAGGGCCGTCGCGTCCAGGCGCTCG ACGTTCAATTGCCACTGTTGCGCGCTTCGTGCGACGTTGGCTAAGAAAGCGGAATCGGCC GGGCCGAGGTTGACGACGCCGGAGCGGACAAAAATAGGCTCTTCATTGTGTGTGGAGAGC TCATCCCAAAGCGTCTGGGCGCGAAGCACCAGCGGGACATATTTTTCGCCTTCACCATAA GCGTGGCGGATAAGACGGGTATCGCCGTGGTGGCTGCCCTGTTGATAAGGCGGCATATGC GCATCGGTCATCAGGACCTTTAGCCCGGCGCGGGTGGCGTAATAACCAGCGGCGGCGCCA ACCGAACCGCTGCCGATAATAATAAGGTCGTATTTCATCAGCTTCTCTCTGCTATCGCGA TGATTTCAAGGTAAATAACTGCGCTGAGATATACAAGCCAGAAATAAGTGAGGCACCTTA CGGTGCCTGAGAGAGGGGGAGCGCGTCACGCTAATGGTGACGATACTCGTTTTCCTGGTA ATCGCCTGATTCTATTTTGGCGATGCCGGCTTCTAATATTGAAATAAATTGCCTGGCTAC ATCTGTCGTTAACCAGAGCGTTTGACCAACTTCAGTCCCTTCCGGTTCCGGACGATTTGG GGTCTGGTAGTGTAAACGCAGCATCAGCGCATCATAGCTATCGACGGTGCTGATGTCCCA TCCTACAAGCGGATGGGTCTGAATGACTTCATTATTCTTTTCCATCATGCCCCCCTGGTA CGTGTTATAAGACAACGGTTCTCGAGGTTCAATGCGTGTTTTTCTTCTGAAGCAACTTCA GTATACCAATTAATAAGGCTATTCACTGCGTTTTTAAAGAGACCGGAGGATAAATTTCTC TTTTTAAGAATTATATGAACAATAAAGCGGCAGTTCATTCATATTTTTTTAGGATGTTGT GCAATTATTTTGACGGTCAGGCGAAATATTCATCAGTTGCGCAAATAAAAAAGCCGGGGC GACCCGGCAAACATACATCACTGCATATCATTTTTTATTCATTGATGAACCAGTCATCAG CGCTCTCCCAGGTCTCCTGGAGAATCTCGCTAATGCGTTCTTTATCCTCTTTTGACGCGC CAATGACGGACAAGTTGTTGGCGGTAGCGTAACGCACGGTGACGTTACCCAAATTCTCAG GAAAATGATGGCTAATACGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCAGCG CACCAATCGCACCGGCAGGCAGAGGTGACGTTTTGGCTATAGTGACTTCAATACGCATAA TGGCCCCCTGTTGAATATACTGGATATATATACAGTTAAATCCAATATATAGCAACAGGT AAGCGCATTTTTTATTTTTTTACTGACCAGCGTACTGTTTCACCCGCTAAAAAAGGCACC AGCGAATCATCAGCCAGCGCGATATTTTCCGGTATCTGTTGTTCATCGCGAACCAGTTCC ACCCACCCCGTATTCACCGGCAGGCCATAGAATTGCGGGCCATTCAGTGAACAGAACGCT TCAAAGTGCGCCAGCGCGTTCATTTCCTCAAACACGGCGGCATAACTGCCAAGAGCGGAG GGGGCGTTGAAACAACCGGCGCAGCCGCAACGGGTCTCTTTACGATGACGTGAATGCGGC GCTGAATCCGTCCCCAGGAAGGCGCGCGTAAAACCACTGGCGACCAGGTCGCGTAACGCC TGCTGGTGAATATTGCGTTTCAGAATCGGCAGACAGTACAGGTGAGGACGAATGCCGCCA ACCAGCATATCATTACGGTTAAACATTAAATGTTGAGGCGTAATGGTCGCCGCCAGGTTG TAGCTGCCGTCACGTACATACTGCGCGGCATCTTTGGTTGTGATGTGTTCAAAGACCACT TTAAGCGCGGTCAGACGCTGGCGTAGCGGTTCCATTACGGTGTCGATAAAACGCGCTTCG CGATCGAAGATATCAACATCCGCATGGGTCACCTCACCGTGGACCAGCAATGGCATTCCG AGTTTTTCCATCCGCTCCAGTACCGGCATGATAGCGTCGACTGACGTTACGCCATGACTG GAGTTAGTGGTGGCATTGGCCGGGTAAAGCTTGGCCGCAGTAAACACGCCTTCATGGAAA CCACGCTCCAGTTCATCGGCATCGAGCGAATCCGTTAAATAGCAGGTCATTAACGGCGTG AAATCATGCCCGGCGGGCACCGCATCGAGAATACGCTGGCGGTAGGCGATCGCTGCATCA ACGGTCGTAATGGGGGACGCCAGGTTCGGCATCACGATAGCGCGACCATAAATTTCGCTG GTATAGGGTACGACCGTTTTTAACATGTCGCCATCGCGAAGGTGAACGTGCCAGTCGTCC GGGCGGCGGATCTTTAAAACCTGGGATGGTGCAGTCATTAATAAGCTCCGGCTGAGGAAT AGTCTTTTTGCCGGAAACAAAGGATAAGCGGAAACGTTTTCGTTTGCACGTAAAAAAAGG GCGCGAGCGCGCCCTCCGAAATCAATTGGTGAAAGGAATAACGATTTCACCAGGTTTAAC TTCAATGCCTTTCGCGAGTTTCTTCGCTAACGCTTCGCCTTTACTACTGTCCTCACGCAA CACGTAAGCGGGCCGCTGGTTAAAGTAGCTACGTAAAGACTGATTTAAATAGGGCAGGAG CGTTTGTAGCACTGATTGCATTTTCTCCGGCGTCACGGTGGCGTCTACTACTTCCATCTC CTGAAGATAGATGGCGCCTTTTTCTTTATCAAAGACCGGCAGGGCTTTTAGCTTGAGTTT CATCGTCGCTTTTTGACTGCCAAACAGGGAATTCATATCCAGCCTGGCATCGCCAGTAAG GGTGACTTTATTAGGCTCTTCCCGACCAATCTGGCTGGCAAGGTTAGTCAATACGATATG CGCGTCGGCAATGCCAGGCAGACCAATATCTTTTGAGAAATTATTCCGTTTTTCAAGCGC TTGATTGATTTCTTGTTCGCTAATGGTGTATTGCGTAAGTTGATTACAACCCACTAACAG GCCGCTAACTACCAGCGCAGCGGCAAAAAAAACTTTTTCATGGCGTTCCTTAGCATGTTG CCTGTGCCCTAATCTTGACACAAAGCAGCATGTCGCGCCAGCGGACATGGCGCCACTAAA AAAAGCTGAAAAAGGCGGCAAGAAAGGGTTGCCGCCTGGCGGGCGTTAGATAGCCATTGA GGAGAGTAAATTAATTTGCGTCTGCTTAGCCATATTATCGCGATAGTCCGCGACTTTTGT CGGCCAGTGAATACCGGCGACCAGCGTCAGATTACGCAGAAGCGGAAACAGATGAATATC ATCTTCCGATAATTCGCCGTTAACGGCGTTAGGCTGTACGATGAGTTTATCCAGCAAACG TAAATCATCGCCGATCTTTTTAATCAGTCCGGCAGAGTGCGCAAGATGGTTGTCAAAACT GCCAGATGAGGCCTCTTTTTTGCGGATAAAATACTGGCGCGCCGCAGGGGTAGAAAATTC ATCGAAAGCGGATTTTGCAAATCGCGGCAGCAGTAGCTGATTAACGTAACCGTTAACTTT GCGCAACCACTCTTCAATGGCTGGATTACGTTTCCCGGTTAACAGCGGTTTGCCGTCGAG GTTGTCGACATAATGTACAATATCCATACTTTCAGGAAGGTAGCGACTATCATCTTTTTG CAGGATGGGCACCATCTTTTGACCAATCATCCGGGTGGGCGTCGCCTCGTCGTCATTTTG TAACACGTTAAGTTCAACGGGGATGTTCTTCAGGCCGAAAATCATGCGGGCTTTAACGCA GAAAGGGCAATGATCGTAAATATAAAGCTTCACGTTTCTCCTCCATTTGACTGTCGGTTC CTGACCAGTATGGAGGAGATAGCGACAGGTATCAAATCAGGCGCCGGGTTCCAGCATCCG GCGCGGCGTGCGCTTATGACTAAATTGCCAGCCTAAAGCCAAAAAGGTGATAAAGCCGAT AATACCGAGCATCATCCACGGTAGTTCAGGCTGCGCAAGCGCTTTACCCATATCAAACAA CCAGCCGCCGCCGATATAACTAATCGCGCCGCCAATGGCTAATCCCAGACGGCTAAAGCC CATATAGCTTCCCCGCGCCCTCGCGTCCGCGGGCGACGCGCTGAGCGTTTCGCGCGCCGG TTCGGCGATAACCGAGCCGATGTAGAAAGCGCAAATAAGCGTAAAAAGCTGCTGTAAATT GCCCACCATCCCGATGGGGAGCATGCTCAGCGACATGACGAGCAAACCGGCCATCAGCCG ATGCTCCAGCCGAAAACGCTTTTCGCTCCAGCGGGCAATCGGGTAGAGCAACGTCAGCGA GAGACACGCCTCAATAGCGTACATCCATTTCACGGCAGCAGGCGAACCGGCGATATCGTT TACCATAATCGGCAGCATTAACATGACCTGTACCGCCAGCATATAGTAGCCCGCCAGCGT CAGCACGTAGGTGACAAACCTTTTATTGCTCATGACGCGGCGCATTCCTTCACGCACCGG CGTTCTGGCCGTTGATAGCTTCCAGGCCGGAAGCAGCCATGCGTTGAAAAGGGCGCATAA TATGAACAAAATAGCGCCCGTCGCGCAGACCAGGCGAAAATCGTATTGTAGCAACCAGCT TCCCAGCAGCGCGCCAATCACCGCGCCCGCGCTGTCCTGCATCATCAACAGAGAGAAGAA GCGGCCCCGTTGCTCCGGACGAATTAATTTGACCACCAGCGCTGAACGCGGCGGGTCGAA AAGCGTACCGCCGAGACCGGAAAGAAAGCAGGAAAACCACAAGAGCCAGGGCTCATGCGC GATACCCATGGTGGCAAAGCCTGCGGCGCGCATCAGCATACCGGTGACAATCATCGGTTT CGCGCCAAAGCGATCGGCGATGGCGCCGCCAAAAATGCCCAGACCTTGTTGAATAAACTG ACGCAGGCCGAGCGCGATCCCTACCATTACGGCAGCCCACCCCATTTGATCGACAAAGCG AATAGAGATGAGCGGGAAGACGACGAAAAAACCCAGCACCACTAACATGTTATCGATGAG AAGAAAATATTTACCCAGGTTCCTCGCCTGCGAGACGCGCGACATTTCCCCTCCCGGGAA ATAAAAGATGAGCGTCTTCTATTCTGCGGCGGCGTTTCGTTTTTTCCTACCGTTAGCGGG ACAATATTTTTTTATCAAAAGTCCTTTTTAATCGAGAGTTTTCATCAAAATGTGGCAGCA ATTCAAAAAATGACGATTTGCGCTTTTCACAGGGCCTGGTTGCGCAGGTATAGTAATGTT ACTGGCGTGCTGAAGACGTTACAGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTA ACGTGCCAAAAGTGCGCTTAACCACCGATCGTCTGGTGGTACGTTTAGTGCATGAGCGTG ATGCCTGGCGTCTGGCCGATTATTACGCGGAAAATCGTCATTTTTTAAAACCCTGGGAAC CGGTCCGTGATGAAAGTCATTGTTATCCTTCAGGATGGCAGGCGCGTCTGGGAATGATCG GTGAATTTCACAAACAGGGCTCCGCCTTCTATTTCGCGCTACTTGATCCGGAAGAAAAAG AAATTATCGGCGTGGCGAATTTTTCCAATGTGGTGCGCGGTTCTTTTCATGCCTGTTATC TGGGCTATTCCATTGCGCAAGAGTGGCAGGGGCAAGGGCTGATGTTTGAAGCCTTAACCG CTGCGATTCGCTATATGCAGCGCACTCAGCATATCCACCGTATCATGGCGAACTATATGC CGCACAACAAACGTAGCGGCGCGTTGCTGGCGCGGCTTGGCTTTGAAAAAGAAGGCTATG CGAAAGATTACCTGTTGATTGATGGACAATGGCGCGACCATGTCCTGACGGCGTTAACCA CGCCGTTATGGACGCCGGGGCGTTGAGCGGCTTACGGAATGAGAGGCAAAGGGAGAAAAC GATGAAATATGAATTAACCGCCACTGAAGCGCGAGTGATTGGCTGTCTGCTGGAAAAGCA GGTGACAACGCCGGAACAGTATCCGCTTTCCGTCAACGGGGTGGTGACAGCCTGTAATCA GAAAACCAACCGTGAACCGGTGATGAACCTGACGGAACAAGAGGTACAAGAACAGCTCGA TAACCTGGTGAAACGCCACTTTTTGCGTACGGTCAGCGGGTTTGGCAACCGCGTCACCAA ATATGAACAGCGCTTCTGTAATTCCGAATTTGGCGATCTGAAACTTAGCGCGGCGGAAGT GGCGCTCGTCACTACGTTGCTGCTGCGCGGCGCGCAAACGCCCGGCGAGTTGCGTAGCCG GGCGTCGCGGATGCATGAATTCAGCGATATGGCGGAAGTTGAATCCACGCTGGAACGGCT TGCCAGTCGTGAGGACGGCCCGTATGTCGTCCGTCTGGCGCGTGAACCGGGTAAGCGCGA AAGCCGCTATATGCACCTTTTTTGCGGCGACGTCGATGAACTGTCTCTCCAGACGTCTGC GCCGGAAAGTGCGTCGGGCGATCTTCAGTCGCGCGTCGAAGCGCTGGAAAGCGAAGTGGC GGAGTTAAAGCAGCGGCTGGATTCTTTGTTAGCTCACCTGGGAGAGTAATGTGAGAACAT TACGGATTGGCATTGTCGTGTTAGGTGGTATTGCGCAGAAGGCCTGGCTGCCGGTATTAA CCAACACCGCCGGATGGACGTTACAGGGCGCCTGGTCTCCTTCGCGGGATAAAGCCTTAC GTATTTGCGAAAGCTGGCGCATACCGTATGTGGATTCGCTGGCGAATTTAGCGTCCGGCT GCGATGCGGTCTTCGTCCACTCCAGTACCGCAAGCCATTATGCCGTGGTCAGCGAACTTC TCAACGCTGGCGTCCATGTCTGCGTGGATAAACCGCTGGCGGAAAATCTACGTGATGCCG AACGGCTGGTGGCGCTGGCGGCGCAAAAAAAATTGACGCTGATGGTTGGCTTTAATCGCC GTTTCGCGCCGCTGTACCGCGAACTGAAGACGCGCCTCGGCACTGCGGCGTCACTGCGTA TGGATAAACATCGTACCGATAGCATCGGGCCGCATGACTTACGTTTTACTTTGCTCGATG ACTATCTGCATGTCGTGGATACCGTTCTGTGGCTGGCGGGCGGCGAGGCGCGCCTTGCCA GCGGCACGTTGCTCACCAGCGAGTCCGGCGAAATGTGCTATGCGGAACATCATTTTTCCG CCGACAAATTACAAATTACCACCAGTATGCACCGGCGCGCCGGAAGTCAGCGTGAATCGG TCCAGGCCGTCACCGATGGCGGGCTGTATGACGTGACGGATATGCGTGAATGGCGCGAAG AGCGCGGGCAGGGTATTCTCATCAAACCCATTCCGGGTTGGCAAACAACGCTTGAGCAGC GTGGTTTTGTCGGATGCGCGCGGCATTTCATTGACTGCGTACAAAATCAGACGGTTCCGG AAACGGCGGGGGAGCAGGCGATTTTGGCCCAGCGCGTCGTGGAGGCGCTGTGGCGGGACG CCATCAGCGAATAATCCTCTGTAACATCTGGCGGTAGTAATTCATCGTAATCCAGGTACT ATACCCTCAATAATTCGAGTTGCAGAAAAGCTAACGCACATGCAGCTCGAAGTATGGCGG GTATATATGCCCACTCTACATAATACCTCTTTTCACAGTGAATAATGGCAAACCGTGGGG AGTCTGTAAGGCCTGATAAGACGTTTTGACGTCGCCGTCAGGCGCAGTGATACAGCCGGA TACGGCAGAAGTTGCGTTATCCGGTCGATGGATCAGCCATGCAGGAGTTTTACGCCAGGG TCTGGAATACAAAAGAAATGAATTTATTGAAATCGCTGGCTGCCGTCAGCTCGATGACTA TGTTTTCACGCGTGTTGGGCTTTGCCCGTGATGCGATTGTCGCCAGAATTTTTGGCGCAG GGATGGCGACCGACGCCTTTTTTGTGGCGTTTAAACTTCCCAATCTACTACGCCGGATCT TTGCCGAAGGCGCTTTTTCTCAGGCCTTTGTGCCTATCCTGGCGGAATATAAGAGCAAGC AGGGTGAAGAAGCGACGCGGATCTTTGTCGCTTACGTTTCCGGCCTGTTGACGCTGGCAT TGGCCGTCGTGACGGTGGCCGGTATGCTGGCCGCCCCGTGGGTGATTATGGTAACCGCGC CGGGTTTTGCCGATACTGCGGATAAATTTGCGCTGACGACGCAACTGCTGCGGATTACGT TTCCCTATATTCTGCTGATCTCGCTGGCTTCACTGGTTGGCGCCATTCTCAACACCTGGA ATCGCTTCTCTATTCCCGCTTTTGCGCCGACATTTCTTAATATCAGTATGATCGGTTTTG CATTATTCGCCGCGCCATACTTTAATCCGCCGGTGCTGGCGTTAGCCTGGGCAGTCACCG TCGGCGGCGTGCTGCAACTGGTGTATCAACTTCCGTATTTGAAAAAGATCGGTATGCTGG TGCTGCCGCGCATTAACTTTCACGACACCGGGGCGATGCGGGTGGTCAAACAGATGGGGC CGGCGATTTTGGGCGTTTCCGTCAGTCAGATCTCCCTTATCATCAATACCATTTTCGCCT CGTTTCTGGCCTCCGGCTCGGTCTCATGGTTGTACTATGCCGATCGGTTGATGGAGTTCC CGTCCGGCGTGCTGGGCGTGGCGTTGGGGACCATCCTGTTGCCGTCATTGTCGAAAAGCT TTGCCAGCGGCAATCATGATGAGTACTGCCGCCTGATGGACTGGGGGCTGCGTTTGTGCT TTTTACTGGCGTTGCCGAGCGCGGTAGCGCTAGGCATTCTGGCGAAGCCGCTGACGGTCT CGCTGTTTCAGTACGGTAAATTCACCGCCTTTGATGCGGCGATGACGCAGCGGGCGTTAA TCGCCTATTCGGTGGGGCTGATTGGCTTGATCGTCGTAAAAGTGCTGGCCCCGGGCTTCT ATTCTCGCCAGGATATTAAAACGCCGGTGAAAATCGCCATCGTGACGTTAATCATGACGC AGTTAATGAACCTGGCGTTTATTGGACCGCTGAAACACGCCGGGCTGTCGCTCTCTATTG GTCTGGCGGCATGTCTCAATGCGTCGCTGCTGTACTGGCAACTGCGCAAACAGAATATCT TTACGCCACAACCGGGGTGGATGTGGTTCCTGATGCGTCTGATCATTTCCGTACTGGTAA TGGCCGCCGTGTTGTTCGGCGTGTTGCATATTATGCCGGAGTGGTCGCAAGGGTCGATGC TATGGCGTTTGCTGCGTTTGATGGCGGTAGTGATCGCGGGTATCGCGGCCTATTTCGCCG CGCTTGCCGTGCTGGGCTTTAAAGTGAAAGAGTTTGTTCGCCGGACGGCGTAAATTCAGT GCCTGATAGCGCTGTGCTATCAGGCCTACAAGGCATTCAGGCCGGAAAGGCGCAACGTCG CCATCCGGCAATGATTAGATAGATATTTTTTTACCGCCGCGGTGAGAGACGGAAGTCTGA CCGTCAGCCCCGTACAAGGTCGGCTCCTGGTGAGGTTTCAGCACCTCCAGCGCCTGTTGA TTACGCTCGATTTGCCCTTCCAGCAGCCAGCCGTTGTGCTGGTTGAGGTCGCGCAGATGC TGCGTTTTTTCGGTAATCGCCTGCCAGCGCTCTGCAATGTCATCGTTTGCGCTACGCTGC GCGTTCTGCTCCAGACGGCGCTGTTGTTCCAGATAATCCAGCGTCGCCAGCAACGAGCTT TTTTCTTCTGTAATACGCTGTAGCTGGCTGCCGTTAATCTGGCCTACGGAAAGCTGTTGT TGCTCGGCGTCCATCACCGTCTTCAGGTCATTCAGGACGGTGGTCATCTGGTCAAGTATT TCTGACAAACGAGTCATACGCTTATTTATTCTGTAAGTAGCTCTGCGCCTCGCGAATGAG CGAGTCTGCTATTTTTCCCGTATCCATTTTTAACTCACCGTTACGGATAGCCGTTTTTAA TGCTTCGACGCGTTCCATATTAATGTCGCTGACGCCTGGCTGCATAAGCTTCGCTTGCGC GTCGCTTAACGTTACGCTGGCGCTCGTCGCGGCGGACGTTTTTTCCTGACGCGTTTTTTG TACCGGCGTGTCGCTGGTTTCGCGCGTCTGGACAGTGCTAACGGGTTTCAAAGGTGAGGT ACGGTCAATGCTCATTTATTTATCCTCATCGAGGGTTACGTTGTAGCGGCCAGCTACCAT CATGGTTGAATATCTCATCGGCAGCCGCGACAAAATCTTTACACAATTATAGGTTAATAA GAATATTCCCATCAGAATCGACGGTTCCACTCACGATTTGACCCGATGTCATGCGCACGC GCGCATTTTGCGCGACGGCGGCATTATTCATCGCCTGACCTTCCGCATTGACGCTAAACC CCTCGCCATTGGCGATGACCTGTACTCGTTGACCCGCTTTGACACGCCAGGCCTGACGTA TCATCGTAAGCTGTACCGGCTGCCCGGGAGCGAGATCGCGCAAACTGACGGCATCCTGAA TCTGACGGATATCCAGTACCGTCCGCGGCGGTAACTGATCCAGTCTGCCACGTTTTAGCG TGACGTTGGCCGGCGTCAATTTTCCGCCGCGCGCGACGGGCGCGGCTACGGCGACATAAT TGCCGGTCGCTTGCACATTCACCTGCAAATAACGTTTTTCATTGGCGCAGCGCGCCACCA CATTGACGTTGCCCCACAGCTTCGCGCTGCCCGTCATGCTGAAGGCTGGCTGCTCGCAGC TCGGTAGCAGATTGGGCGGTGAACGGAGCGTGACAACCACCTCGTCGCTGAAGCCAGCCA GACGCTGGGAAAACCACGTGGTCAGCTGGGCGTTGATGTCCTGCGCCATTGTCAGGGGGC TGAACAGCAAAGCCGCCACGGCGAATCCTCGTTTTAACGTTTGCATGGTACTTCCCCCTG GTTGATGTCATGACAGGATTCTACCCGTGTGAAGCAAGCATCAACGCAATAAATAGCGAC GCATTTTGCGTTTATTCCGGCGATAACGCGCGCGTGAAGGCATTTAAGCTGTCGGCTGAA TTTTGCCATTTGCGGAGGAGATATGCTCGACAGGCTCGATGCCGCCTTACGATTTCAGCA GGAAGCGCTAAATCTGCGCGCGCAACGTCAGGAAATATTAGCGGCGAATATCGCCAATGC CGATACGCCGGGGTATCAGGCGCGCGATATTGATTTTGCCAGTGAGTTAAAAAAAGTGAT GGTGCGCGGACGGGAAGAAACCGGCGGCGTCGCGTTGTCGTTGACTTCTTCTCGCCATAT TCCCGCCCAGGCGGTCTCTTCTCCCGCAGTGGATCTGCTTTACCGCGTACCCGATCAGCC TTCTTTGGATGGTAACACCGTAGATATGGACAGGGAACGTACGCAGTTTGCGGATAACAG TCTCAAATATCAGATGGGGCTTACCGTTCTGGGTAGCCAACTCAAAGGCATGATGAATGT GCTACAGGGAGGAAACTAATTCGTGGCGCTGTTAAACATTTTTGATATTGCCGGATCGGC GCTTGCCGCACAGTCCAAGCGGTTGAACGTTGCGGCCAGTAACCTTGCGAATGCGGATAG CGTCACCGGCCCGGACGGACAGCCTTATCGCGCCAAACAGGTGGTTTTTCAGGTGGACGC CGCGCCGGGTCAAGCCACTGGCGGGGTAAAGGTCGCCAGCGTGATTGAAAGTCAGGCACC GGAAAAGCTGGTTTATGAGCCAGGCAATCCGCTGGCGGACGCTAATGGTTACGTCAAAAT GCCCAACGTCGATGTGGTCGGCGAAATGGTCAACACGATGTCAGCCTCGCGCAGCTATCA GGCAAATATCGAAGTCCTGAATACCGTAAAAAGCATGATGCTTAAAACGCTGACATTAGG CCAGTAAAGGAGGCGCGTATGTCTATTGCCGTAAATATGAATGACCCGACCAACACGGGC GTCAAAACGACGACCGGCAGCGGGTCGATGACCGGAAGCAACGCTGCCGATCTGCAAAGC AGTTTCCTGACCTTACTGGTCGCGCAATTGAAGAACCAGGACCCGACTAACCCATTACAA AATAATGAGTTAACGACACAGTTGGCGCAAATCAGTACCGTGAGCGGCATTGAAAAACTG AATACGACGCTGGGGGCTATTTCCGGGCAAATCGATAATAGTCAGTCCCTACAGGCGACC ACGCTGATTGGACATGGCGTTATGGTGCCTGGCACCACAATTCTGGCGGGTAAAGGCGCG GAAGAAGGGGCCGTGACGTCCACGACGCCGTTTGGCGTGGAATTGCAACAGCCTGCGGAC AAAGTGACGGCAACCATTACCGATAAAGATGGCCGGGTGGTACGGACGCTGGAGATCGGT GAGTTGCGAGCCGGGGTACACACCTTTACCTGGGATGGTAAGCAAACGGACGGAACAACG GTACCGAATGGTTCTTACAACATTGCGATTACCGCCAGCAATGGCGGGACGCAACTGGTG GCGCAGCCGCTGCAATTCGCTCTGGTACAGGGCGTGACGAAGGGCAGTAACGGCAACCTG TTGGATCTGGGTACCTACGGCACCACCACACTCGACGAAGTTCGGCAAATAATCTAAGCC CTTACACTTATCAGGAGTCAGTCATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTG CGGCCACCAACCTTGATGTTATCGGTAATAACATCGCCAACTCCGCCACCTATGGCTTTA AGTCCGGTACGGCATCATTTGCCGATATGTTCGCCGGTTCCAAAGTGGGGTTGGGCGTAA AAGTGGCGGGGATTACCCAGGATTTTACCGACGGTACGACAACGAACACCGGGCGCGGGC TGGATGTCGCGATTAGCCAGAACGGTTTTTTCCGCCTGGTAGACAGCAACGGTTCCGTGT TCTATAGCCGCAACGGCCAGTTCAAACTGGACGAGAACCGTAACCTGGTCAATATGCAGG GGATGCAGTTGACCGGCTATCCGGCCACCGGTACGCCGCCGACCATTCAGCAGGGGGCGA ATCCTGCGCCGATCACCATTCCGAACACGCTGATGGCGGCGAAATCGACCACCACCGCGT CAATGCAGATCAACCTGAACTCAACGGACCCTGTACCGTCTAAAACGCCCTTTAGCGTGA GTGATGCGGATTCGTATAACAAAAAAGGCACCGTCACCGTTTATGACAGCCAGGGTAATG CCCATGACATGAACGTCTATTTTGTGAAAACCAAAGATAATGAATGGGCTGTGTACACCC ATGACAGCAGCGATCCTGCAGCCACTGCGCCAACAACGGCGTCCACTACGCTGAAATTCA ATGAAAACGGGATTCTGGAGTCTGGCGGTACGGTGAACATCACCACCGGTACGATTAATG GCGCGACAGCGGCCACCTTCTCCCTCAGCTTCCTTAACTCCATGCAGCAGAACACCGGGG CTAATAACATCGTCGCCACCAATCAAAACGGCTATAAGCCTGGCGACCTGGTGAGCTACC AGATTAACAATGATGGCACCGTGGTTGGCAACTACTCCAACGAGCAGGAGCAGGTGCTGG GGCAGATTGTGCTGGCTAACTTCGCCAACAACGAAGGTCTGGCATCCCAGGGCGATAACG TCTGGGCGGCGACGCAGGCCTCCGGGGTAGCGCTGCTGGGGACTGCCGGTTCCGGCAACT TCGGTAAGCTGACGAACGGCGCGCTGGAAGCCTCTAACGTGGATTTGAGTAAAGAGCTGG TGAATATGATCGTCGCGCAGCGTAACTACCAGTCGAATGCGCAGACCATCAAAACCCAGG ACCAGATCCTCAATACGCTGGTTAACCTGCGCTAAGCGCCTGACGGGATAGCTTAATGGA TCACGCAATTTATACCGCCATGGGGGCGGCCAGCCAGACGCTTAACCAGCAGGCGGTAAC GGCCAGCAACCTGGCTAATGCCTCAACGCCGGGCTTTCGCGCGCAGCTTAACGCGCTACG CGCGGTGCCCGTTGATGGCCTCTCTTTAGCGACGCGCACGTTGGTTACGGCGTCGACGCC GGGGGCGGATATGACCCAGGGTCAGTTGGACTACACTTCCCGCCCGCTGGATGTTGCGTT ACAGCAGGACGGCTGGCTGGTGGTGCAAGCGGCGGATGGCGCTGAAGGATATACCCGTAA CGGGAATATCCAGGTGGGCCCGACCGGGCAGTTAACCATTCAGGGACATCCGGTTATCGG CGAAGGCGGCCCGATTACCGTTCCGGAAGGGTCGGAAATCACCATTGCGGCAGACGGCAC GATCTCCGCGCTCAATCCCGGCGACCCGCCAAACACGGTGGCGCCCGTTGGGCGGCTGAA GCTGGTCAAAGCGGAAGGCAATGAGGTGCAGCGGAGCGATGACGGTTTATTCCGCCTTAC CGCCGAGGCACAGGCTGAACGCGGGGCGGTACTGGCCGCCGACCCGTCAATTCGCATTAT GTCGGGCGTGCTGGAGGGCAGTAACGTCAAGCCGGTTGAAGCCATGACCGACATGATCGC CAACGCACGTCGTTTTGAAATGCAGATGAAGGTTATCACCAGCGTAGATGAGAACGAAGG GCGAGCTAACCAACTGCTGTCGATGAGTTAATACAGGACATTTTATGATCAGTTCATTAT GGATCGCCAAAACCGGTCTGGACGCGCAGCAAACCAATATGGATGTGATTGCCAATAACC TGGCAAACGTCAGCACCAATGGTTTTAAGCGTCAGCGCGCGGTATTTGAAGATCTGTTGT ATCAGACCATCCGCCAGCCGGGCGCGCAGTCGTCCGAGCAGACGACGCTGCCTTCCGGGC TGCAAATCGGTACCGGCGTGCGTCCGGTCGCCACGGAGCGCCTGCACAGTCAGGGGAACC TGTCGCAGACCAACAACAGTAAAGATGTGGCGATTAAAGGGCAGGGCTTTTTCCAGGTCA TGCTGCCGGACGGTACGTCTGCCTATACCCGCGACGGCTCTTTCCAGGTGGATCAGAATG GTCAACTGGTGACGGCGGGCGGTTTTCAGGTGCAGCCGGCAATCACCATTCCGGCCAACG CGTTAAGCATCACGATTGGCCGCGACGGCGTGGTCAGCGTTACCCAGCAAGGGCAGGCCG CGCCGGTTCAGGTCGGGCAGCTTAACCTGACCACCTTTATGAACGACACCGGTCTGGAAA GCATCGGCGAGAACCTCTATATCGAAACGCAATCGTCCGGCGCGCCGAACGAAAGCACGC CGGGGCTCAACGGCGCGGGGTTGTTGTATCAAGGGTATGTCGAAACGTCGAACGTTAACG TGGCGGAAGAGCTGGTGAACATGATTCAGGTTCAACGCGCCTATGAAATTAACAGTAAAG CAGTATCGACGACCGATCAGATGCTGCAGAAACTGACGCAACTCTAAGGGGCCGCCGGTG GGGGATACGCCACCGGCTCCCTGATTTTGAAGATGAAGGTAATGCAAAAATACGCGCTTC ACGCTTACCCAGTTATGGCCCTGATGGTCGCGACGCTGACAGGATGCGCCTGGATACCCG CTAAACCGCTCGTGCAGGGGGCGACCACGGCGCAGCCGATACCTGGCCCGGTACCGGTGG CGAATGGCTCCATATTTCAGTCTGCGCAGCCGATTAATTATGGCTATCAGCCGCTTTTTG AAGATCGTCGACCGCGTAATATCGGCGATACGCTCACGATTGTGTTACAGGAAAACGTCA GCGCCAGTAAAAGCTCGTCGGCAAATGCCAGCCGCGACGGCAAAACCAGCTTTGGTTTTG ATACGGTACCGCGTTATCTGCAGGGATTATTCGGTAATTCCCGCGCGGATATGGAGGCCT CCGGCGGCAACTCTTTTAATGGTAAAGGCGGCGCGAATGCCAGCAATACCTTTAGCGGCA CGCTGACCGTGACCGTCGATCAGGTTCTGGCCAATGGCAATTTACACGTCGTGGGGGAAA AACAGATCGCGATTAATCAGGGAACGGAATTCATCCGCTTCTCCGGCGTGGTAAATCCAC GCACCATCAGCGGTAGCAACTCTGTTCCCTCGACACAGGTGGCGGATGCGCGGATTGAAT ATGTCGGGAACGGCTATATTAACGAAGCGCAAAATATGGGCTGGCTGCAACGTTTCTTCC TTAATTTGTCGCCGATGTAAGCGAGGTGTATGTGTTTAAAGCTCTTGCAGGAATCGTTCT GGCACTGGTTGCCACTCTGGCGCACGCCGAGCGTATCCGGGATCTGACCAGTGTCCAGGG AGTACGGGAAAACTCGCTGATCGGCTACGGGCTGGTGGTCGGGCTGGACGGTACGGGCGA CCAGACGACCCAGACGCCATTTACCACCCAGACGCTGAATAACATGCTGTCACAACTGGG GATTACGGTCCCCACCGGCACCAATATGCAGTTGAAAAACGTGGCGGCGGTGATGGTGAC GGCGTCGTATCCGCCTTTTGCGCGACAGGGACAAACGATCGATGTCGTCGTTTCCTCAAT GGGGAACGCTAAAAGTCTGCGTGGCGGGACGTTATTAATGACGCCGTTAAAAGGGGTGGA CAGCCAGGTGTATGCTCTGGCGCAGGGCAATATTCTGGTCGGCGGCGCGGGCGCTTCCGC AGGCGGCAGTAGCGTGCAGGTTAACCAGCTTAATGGCGGGCGCATCACTAATGGCGCGAT TATCGAACGCGAGTTGCCGACTCAGTTCGGCGCTGGCAACACCATTAATCTGCAATTGAA CGACGAAGATTTTACGATGGCGCAGCAAATTACCGACGCCATCAACCGCGCCCGCGGTTA CGGCAGCGCCACTGCGCTTGATGCGCGAACGGTACAGGTACGCGTGCCCAGCGGCAACAG CTCGCAGGTGCGTTTTCTGGCGGACATTCAAAATATGGAAGTCAACGTGACGCCGCAGGA TGCAAAAGTCGTGATCAACTCGCGTACCGGTTCGGTGGTCATGAATCGGGAAGTCACGCT GGATAGCTGCGCTGTGGCGCAGGGCAATTTGTCAGTGACAGTCAATCGCCAACTCAACGT CAACCAGCCGAATACGCCATTTGGCGGCGGGCAGACCGTGGTGACGCCACAGACTCAGAT AGATTTGCGTCAGAGCGGCGGATCGCTACAGAGCGTGCGTTCCAGCGCCAATCTGAACAG CGTAGTGCGCGCGCTGAATGCGCTTGGCGCGACGCCGATGGATCTGATGTCGATTTTGCA GTCCATGCAGAGCGCGGGCTGTCTACGCGCCAAACTGGAAATCATCTGATGATCGGAGAC GGTAAATTGCTGGCCAGCGCGGCCTGGGATGCGCAATCTCTGAACGAACTGAAAGCGAAA GCGGGCCAGGACCCGGCGGCGAATATCCGTCCTGTGGCCCGTCAGGTGGAAGGGATGTTT GTGCAGATGATGCTGAAAAGTATGCGCGAGGCTTTACCCAAAGATGGTTTATTCAGCAGC GATCAGACGCGTCTGTATACCAGCATGTATGACCAGCAGATCGCCCAGCAGATGACCGCC GGTAAGGGATTGGGGCTGGCGGATATGATGGTTAAACAGATGACGGGCGGGCAGACGATG CCTGCAGATGATGCGCCGCAAGTACCGCTTAAATTCTCCCTGGAGACGGTAAACAGCTAT CAAAATCAGGCGCTGACCCAACTGGTGCGCAAAGCCATACCGAAAACGCCGGACAGCAGC GATGCGCCGCTCTCCGGCGACAGTAAAGACTTTCTGGCCCGGCTTTCGCTCCCGGCGAGG CTGGCCAGCGAACAAAGCGGGGTGCCGCATCATCTGATTCTGGCGCAGGCGGCGCTGGAG TCCGGCTGGGGGCAGCGGCAAATCCTGCGGGAGAATGGCGAACCCAGCTATAACGTATTT GGCGTGAAAGCGACCGCCAGTTGGAAAGGGCCGGTGACGGAAATCACCACCACTGAATAC GAAAATGGCGAAGCGAAAAAAGTGAAAGCGAAATTCCGCGTCTATAGCTCGTATCTGGAG GCGTTATCGGATTATGTCGCGCTGTTAACGCGTAACCCACGCTACGCTGCCGTGACCACT GCCGCCACGGCAGAGCAGGGCGCAGTGGCTCTGCAAAACGCCGGATACGCCACTGACCCG AATTACGCGCGTAAATTGGCCAGCATGATTCAGCAGTTGAAAGCGATGAGTGAAAAGGTC AGCAAAACCTACAGCGCGAATCTCGACAATCTCTTTTAAATTGCTCAAGTCCACGTAGTC GCTGCCGATAACAACGAGTATTGAAGGATTAAAAGGAACCATCATGTCCAGCTTGATTAA TCACGCCATGAGCGGACTTAACGCCGCGCAGGCCGCGTTAAATACGGTCAGTAATAACAT CAACAATTATAACGTTGCGGGTTATACCCGGCAGACAACTATTCTGGCGCAGGCAAACAG TACGTTAGGGGCTGGCGGCTGGATAGGTAATGGCGTTTACGTTTCAGGCGTACAGCGCGA ATATGATGCGTTTATCACTAATCAGCTACGCGGCGCGCAAAACCAGAGCAGCGGCTTAAC CACGCGCTATGAACAAATGTCGAAAATCGACAACCTGCTGGCCGATAAATCCAGCTCACT GTCTGGCTCGCTGCAGAGTTTTTTTACCAGCCTGCAAACGTTAGTCAGTAATGCGGAAGA TCCTGCGGCGCGTCAGGCGCTGATTGGTAAAGCGGAAGGGCTGGTAAACCAGTTCAAAAC CACCGATCAGTATCTGCGCGATCAGGATAAACAGGTCAATATCGCGATTGGCTCCAGCGT GGCGCAAATCAACAATTACGCGAAGCAGATAGCTAACCTGAACGATCAAATCTCCCGTAT GACGGGCGTAGGCGCGGGCGCATCGCCGAACGACCTGCTCGATCAACGTGATCAGTTGGT TAGCGAGCTTAACAAGATCGTTGGCGTCGAGGTGAGTGTACAGGACGGCGGCACCTATAA CCTGACGATGGCCAATGGCTATACGCTGGTGCAGGGGTCGACGGCGCGTCAGTTGGCGGC GGTTCCCTCCAGCGCCGACCCGACGCGAACGACTGTCGCTTATGTCGATGAGGCCGCCGG TAACATCGAAATTCCGGAAAAGTTGCTGAACACCGGTTCGCTCGGCGGGCTACTGACGTT CCGTTCTCAGGATCTGGATCAGACTCGTAATACGCTGGGCCAGTTGGCGTTGGCGTTTGC CGATGCGTTTAACGCGCAGCATACCAAAGGTTATGACGCCGACGGCAATAAAGGGAAAGA CTTCTTTAGCATTGGCTCGCCGGTGGTATATAGCAACAGTAATAATGCCGATAAAACGGT ATCGCTAACCGCTAAGGTGGTCGACAGCACGAAGGTTCAGGCGACGGATTATAAGATTGT TTTTGACGGTACAGACTGGCAGGTTACTCGCACTGCGGATAACACCACCTTCACGGCAAC AAAAGATGCTGACGGAAAACTGGAGATTGACGGTCTGAAAGTGACGGTAGGGACTGGCGC ACAGAAAAACGACAGTTTTCTTCTCAAGCCGGTCAGCAATGCTATCGTCGACATGAACGT TAAAGTGACAAATGAAGCCGAGATTGCGATGGCGTCTGAGTCAAAACTCGATCCTGATGT GGATACCGGCGACAGCGATAACCGCAATGGTCAGGCATTGCTGGACTTACAAAACAGCAA TGTAGTGGGCGGCAACAAAACCTTTAACGATGCTTACGCCACGTTGGTCAGCGATGTGGG TAACAAAACGTCAACGCTGAAAACCAGCAGCACCACGCAGGCGAATGTGGTTAAACAGCT TTATAAACAGCAACAGTCGGTTTCCGGCGTTAACCTCGACGAAGAGTACGGCAATTTGCA GCGTTATCAGCAGTATTATCTGGCGAATGCGCAAGTATTGCAGACCGCGAATGCGCTGTT TGATGCGTTATTGAATATTCGCTAAAGGAGAAGGATGACATGCGTATCAGTACCCAGATG ATGTACGAACAAAATATGAGCGGCATCACTAATTCTCAGGCCGAATGGATGAAGCTGGGC GAGCAGATGTCTACCGGTAAGCGCGTTACCAACCCATCTGACGATCCGATCGCCGCGTCG CAGGCGGTAGTACTCTTTCAGGCGCAGGCGCAGAATAGCCAGTACGCCCTGGCGCGTACG TTTGCCACCCAAAAAGTGTCGCTGGAAGAAAGCGTACTCAGTCAGGTGACGACGGCGATT CAAACCGCGCAGGAAAAAATCGTCTATGCCGGAAACGGCACGTTAAGCGACGATGACCGC GCGTCGCTGGCGACGGATTTACAGGGGATCCGCGATCAGCTGATGAACCTGGCAAACAGC ACTGACGGCAATGGTCGCTATATCTTTGCCGGGTATAAAACGGAAGCGGCGCCATTCGAC CAGGCGACAGGTGGTTATCATGGCGGCGAGAAAAGTGTTACCCAGCAGGTGGATTCCGCA CGCACGATGGTAATTGGCCATACGGGAGCGCAAATTTTTAATAGCATCACCAGCAATGCG GTGCCGGAACCGGATGGCTCGGACTCCGAAAAGAATCTGTTTGTCATGCTCGATACGGCA ATTGCCGCGCTCAAGACCCCGGTGGAAGGCAATGACGTGGAAAAAGAAAAAGCCGCTGCC GCCATTGATAAAACCAATCGCGGCTTAAAAAATTCGCTTAATAACGTCCTGACCGTTCGT GCGGAACTGGGAACGCAACTGAGCGAACTCAGTACGCTGGATTCACTGGGAAGCGACCGT GCGCTGGGACAGAAGCTACAGATGAGCAACCTGGTAGATGTGGACTGGAACTCGGTCATT TCCTCCTACGTCATGCAACAGGCGGCATTACAGGCGTCCTATAAAACGTTTACCGACATG CAGGGAATGTCGCTTTTCCAGTTGAACCGGTAACGCCTCTTTTTGAAACATATCACGAAA CTGGATATGTTTTGTCTGCCCGCGCCATCCACCCCGGCGCGGGCATTTTTTGTCTATGGA AAACCCCCAGCTAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTAAGCCAGTTATTAAAAC CCCTTTTGATTTGTTAAAACATCTTGCGGTCTGGCRoary-3.8.0/t/data/real_data_2.gff000066400000000000000000004345251304207556500166370ustar00rootroot00000000000000##gff-version 3 ##sequence-region ERS222222|SC|contig000020 1 92255 ERS222222|SC|contig000020 Prodigal:2.60 CDS 241 921 . - 0 ID=22222_2#22_04055;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145956.2,protein motif:Pfam:PF07108.5;locus_tag=22222_2#22_04055;product=pathogenicity island-encoded protein A,PipA protein;protein_id=gnl|SC|22222_2#22_04055 ERS222222|SC|contig000020 Prodigal:2.60 CDS 1144 2019 . - 0 ID=22222_2#22_04056;gene=pipB2_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145957.1,similar to AA sequence:UniProtKB:Q8ZMM8,protein motif:CLUSTERS:PRK15197,protein motif:Cdd:COG5351,protein motif:Pfam:PF00805.16;locus_tag=22222_2#22_04056;product=secreted effector protein,Type III effector pipB2,secreted effector protein PipB,Uncharacterized protein conserved in bacteria,Pentapeptide repeats (8 copies);protein_id=gnl|SC|22222_2#22_04056 ERS222222|SC|contig000020 Infernal:1.1 ncRNA 2139 2237 . + 0 ID=22222_2#22_04057;inference=COORDINATES:profile:Infernal:1.1;locus_tag=22222_2#22_04057;product=isrI ERS222222|SC|contig000020 Prodigal:2.60 CDS 2567 2908 . - 0 ID=22222_2#22_04058;gene=sigE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145959.1,similar to AA sequence:UniProtKB:O30917,protein motif:CLUSTERS:PRK15202,protein motif:Pfam:PF07824.6;locus_tag=22222_2#22_04058;product=chaperone protein SigE,Chaperone protein sigE,type III secretion chaperone protein SigE,Type III secretion chaperone domain;protein_id=gnl|SC|22222_2#22_04058 ERS222222|SC|contig000020 Prodigal:2.60 CDS 2925 4610 . - 0 ID=22222_2#22_04059;eC_number=3.1.3.-,3.1.3.-;gene=sopB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145960.1,similar to AA sequence:UniProtKB:O30916,protein motif:CLUSTERS:PRK15378,protein motif:Pfam:PF05925.6;locus_tag=22222_2#22_04059;product=inositol phosphate phosphatase SopB,Inositol phosphate phosphatase sopB,inositol phosphate phosphatase SopB,Enterobacterial virulence protein IpgD;protein_id=gnl|SC|22222_2#22_04059 ERS222222|SC|contig000020 Prodigal:2.60 CDS 5332 6801 . - 0 ID=22222_2#22_04060;eC_number=3.4.-.-;gene=pepD_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002215025.1,similar to AA sequence:UniProtKB:Q8G6Z9,protein motif:Pfam:PF03577.9;locus_tag=22222_2#22_04060;product=peptidase family C69,Dipeptidase,Peptidase family C69;protein_id=gnl|SC|22222_2#22_04060 ERS222222|SC|contig000020 Prodigal:2.60 CDS 6974 8338 . - 0 ID=22222_2#22_04061;eC_number=2.7.13.3;gene=yedV;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145964.1,similar to AA sequence:UniProtKB:P76339,protein motif:CLUSTERS:PRK09835,protein motif:Cdd:COG5278,protein motif:TIGRFAMs:TIGR01386,protein motif:Pfam:PF02518.20;locus_tag=22222_2#22_04061;product=heavy metal sensor kinase subfamily,Probable sensor-like histidine kinase YedV,sensor kinase CusS,Predicted periplasmic ligand-binding sensor domain,heavy metal sensor kinase,Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase;protein_id=gnl|SC|22222_2#22_04061 ERS222222|SC|contig000020 Prodigal:2.60 CDS 8331 9068 . - 0 ID=22222_2#22_04062;gene=copR;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002243090.1,similar to AA sequence:UniProtKB:P76340,protein motif:CLUSTERS:PRK11517,protein motif:Cdd:COG4565,protein motif:TIGRFAMs:TIGR01387,protein motif:Pfam:PF00072.18;locus_tag=22222_2#22_04062;product=transcriptional regulatory protein YedW,Probable transcriptional regulatory protein YedW,transcriptional regulatory protein YedW,Response regulator of citrate/malate metabolism,heavy metal response regulator,Response regulator receiver domain;protein_id=gnl|SC|22222_2#22_04062 ERS222222|SC|contig000020 Prodigal:2.60 CDS 9147 9557 . + 0 ID=22222_2#22_04063;eC_number=3.5.2.17,3.5.2.17;gene=uraH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145966.1,similar to AA sequence:UniProtKB:Q4VYA5,protein motif:CLUSTERS:PRK15036,protein motif:TIGRFAMs:TIGR02962,protein motif:Pfam:PF00576.15;locus_tag=22222_2#22_04063;product=hydroxyisourate hydrolase,5-hydroxyisourate hydrolase precursor,hydroxyisourate hydrolase,hydroxyisourate hydrolase,HIUase/Transthyretin family;protein_id=gnl|SC|22222_2#22_04063 ERS222222|SC|contig000020 Prodigal:2.60 CDS 9890 10402 . - 0 ID=22222_2#22_04064;eC_number=1.5.1.36;gene=hpaC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729827.1,similar to AA sequence:UniProtKB:Q57501,protein motif:CLUSTERS:PRK15486,protein motif:TIGRFAMs:TIGR02296,protein motif:Pfam:PF01613.12;locus_tag=22222_2#22_04064;product=4-hydroxyphenylacetate 3-monooxygenase coupling protein,4-hydroxyphenylacetate 3-monooxygenase reductase component,4-hydroxyphenylacetate 3-monooxygenase reductase subunit,4-hydroxyphenylacetate 3-monooxygenase%2C reductase component,Flavin reductase like domain;protein_id=gnl|SC|22222_2#22_04064 ERS222222|SC|contig000020 Prodigal:2.60 CDS 10420 11652 . - 0 ID=22222_2#22_04065;eC_number=1.14.14.9;gene=hpaB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145968.1,similar to AA sequence:UniProtKB:Q57160,protein motif:TIGRFAMs:TIGR02310,protein motif:Pfam:PF03241.7;locus_tag=22222_2#22_04065;product=4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component,4-hydroxyphenylacetate 3-monooxygenase oxygenase component,4-hydroxyphenylacetate 3-monooxygenase%2C oxygenase component,4-hydroxyphenylacetate 3-hydroxylase C terminal;protein_id=gnl|SC|22222_2#22_04065 ERS222222|SC|contig000020 Prodigal:2.60 CDS 11833 12273 . - 0 ID=22222_2#22_04066;gene=hpaR;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145969.1,similar to AA sequence:UniProtKB:O07458,protein motif:TIGRFAMs:TIGR02337,protein motif:Pfam:PF01047.16;locus_tag=22222_2#22_04066;product=homoprotocatechuate degradation operon regulator%2C HpaR,Benzoate anaerobic degradation regulator,homoprotocatechuate degradation operon regulator%2C HpaR,MarR family;protein_id=gnl|SC|22222_2#22_04066 ERS222222|SC|contig000020 Prodigal:2.60 CDS 12548 13837 . + 0 ID=22222_2#22_04067;eC_number=5.3.3.-;gene=hpaG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729830.1,similar to AA sequence:UniProtKB:P37352,protein motif:CLUSTERS:PRK15203,protein motif:Cdd:COG0179,protein motif:TIGRFAMs:TIGR02303,protein motif:Pfam:PF01557.12;locus_tag=22222_2#22_04067;product=4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase,4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway),4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase%2C C-terminal subunit,Fumarylacetoacetate (FAA) hydrolase family;protein_id=gnl|SC|22222_2#22_04067 ERS222222|SC|contig000020 Prodigal:2.60 CDS 13834 14133 . + 0 ID=22222_2#22_04068;eC_number=1.2.1.8;gene=hpcC_1;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729831.1,similar to AA sequence:UniProtKB:Q9HTJ1,protein motif:CLUSTERS:PRK13252,protein motif:Cdd:COG3191,protein motif:TIGRFAMs:TIGR02299,protein motif:Pfam:PF00171.1;locus_tag=22222_2#22_04068;product=5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase,Betaine aldehyde dehydrogenase,betaine aldehyde dehydrogenase,L-aminopeptidase/D-esterase,5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase,Aldehyde dehydrogenase family;protein_id=gnl|SC|22222_2#22_04068 ERS222222|SC|contig000020 Prodigal:2.60 CDS 14127 15299 . + 0 ID=22222_2#22_04069;eC_number=1.2.1.-;gene=hpcC_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729831.1,similar to AA sequence:UniProtKB:P23105,protein motif:CLUSTERS:PRK13252,protein motif:Cdd:COG4230,protein motif:TIGRFAMs:TIGR02299,protein motif:Pfam:PF00171.1;locus_tag=22222_2#22_04069;product=5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase,2-hydroxymuconic semialdehyde dehydrogenase,betaine aldehyde dehydrogenase,Delta 1-pyrroline-5-carboxylate dehydrogenase,5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase,Aldehyde dehydrogenase family;protein_id=gnl|SC|22222_2#22_04069 ERS222222|SC|contig000020 Prodigal:2.60 CDS 15301 16152 . + 0 ID=22222_2#22_04070;eC_number=1.13.11.15,1.13.11.15;gene=hpcB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729832.1,similar to AA sequence:UniProtKB:Q05353,protein motif:CLUSTERS:PRK03881,protein motif:Cdd:COG0179,protein motif:TIGRFAMs:TIGR02298,protein motif:Pfam:PF02900.1;locus_tag=22222_2#22_04070;product=3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase,3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase,hypothetical protein,2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1%2C7-dioic acid hydratase (catechol pathway),3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase,Catalytic LigB subunit of aromatic ring-opening dioxygenase;protein_id=gnl|SC|22222_2#22_04070 ERS222222|SC|contig000020 Prodigal:2.60 CDS 16162 16542 . + 0 ID=22222_2#22_04071;eC_number=5.3.3.10,5.3.3.10;gene=hpcD;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729833.1,similar to AA sequence:UniProtKB:Q05354,protein motif:CLUSTERS:PRK15031,protein motif:Cdd:COG3232,protein motif:Pfam:PF02962.1;locus_tag=22222_2#22_04071;product=5-carboxymethyl-2-hydroxymuconate delta-isomerase,5-carboxymethyl-2-hydroxymuconate Delta-isomerase,5-carboxymethyl-2-hydroxymuconate delta-isomerase,5-carboxymethyl-2-hydroxymuconate isomerase,5-carboxymethyl-2-hydroxymuconate isomerase;protein_id=gnl|SC|22222_2#22_04071 ERS222222|SC|contig000020 Prodigal:2.60 CDS 16686 17489 . + 0 ID=22222_2#22_04072;eC_number=4.2.-.-,4.2.1.80;gene=hpcG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729834.1,similar to AA sequence:UniProtKB:Q9S156,protein motif:CLUSTERS:PRK11342,protein motif:Cdd:COG3971,protein motif:TIGRFAMs:TIGR02312,protein motif:Pfam:PF01557.12;locus_tag=22222_2#22_04072;product=2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase,2-keto-4-pentenoate hydratase,2-keto-4-pentenoate hydratase,2-keto-4-pentenoate hydratase,2-oxo-hepta-3-ene-1%2C7-dioic acid hydratase,Fumarylacetoacetate (FAA) hydrolase family;protein_id=gnl|SC|22222_2#22_04072 ERS222222|SC|contig000020 Prodigal:2.60 CDS 17500 18291 . + 0 ID=22222_2#22_04073;eC_number=4.1.2.-;gene=hpaI;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216043.1,similar to AA sequence:UniProtKB:Q47098,protein motif:CLUSTERS:PRK10128,protein motif:Cdd:COG2301,protein motif:TIGRFAMs:TIGR02311,protein motif:Pfam:PF03328.8;locus_tag=22222_2#22_04073;product=4-hydroxyphenylacetate catabolism,4-hydroxy-2-oxo-heptane-1%2C7-dioate aldolase,2-keto-3-deoxy-L-rhamnonate aldolase,Citrate lyase beta subunit,2%2C4-dihydroxyhept-2-ene-1%2C7-dioic acid aldolase,HpcH/HpaI aldolase/citrate lyase family;protein_id=gnl|SC|22222_2#22_04073 ERS222222|SC|contig000020 Prodigal:2.60 CDS 18363 19739 . + 0 ID=22222_2#22_04074;gene=hpaX;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729836.1,similar to AA sequence:UniProtKB:P76470,protein motif:CLUSTERS:PRK11551,protein motif:Cdd:COG2814,protein motif:TIGRFAMs:TIGR02332,protein motif:Pfam:PF07690.10;locus_tag=22222_2#22_04074;product=4-hydroxyphenylacetate permease,Inner membrane transport protein RhmT,putative 3-hydroxyphenylpropionic transporter MhpT,Arabinose efflux permease,4-hydroxyphenylacetate permease,Major Facilitator Superfamily;protein_id=gnl|SC|22222_2#22_04074 ERS222222|SC|contig000020 Prodigal:2.60 CDS 19749 20645 . + 0 ID=22222_2#22_04075;gene=hpaA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729837.1,similar to AA sequence:UniProtKB:P40408,protein motif:CLUSTERS:PRK10572,protein motif:Cdd:COG2169,protein motif:TIGRFAMs:TIGR02297,protein motif:Pfam:PF12833.1;locus_tag=22222_2#22_04075;product=4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein,Bacillibactin transport regulator,DNA-binding transcriptional regulator AraC,Adenosine deaminase,4-hydroxyphenylacetate catabolism regulatory protein HpaA,Helix-turn-helix domain;protein_id=gnl|SC|22222_2#22_04075 ERS222222|SC|contig000020 Prodigal:2.60 CDS 20659 21597 . + 0 ID=22222_2#22_04076;eC_number=3.1.26.11,3.1.26.11;gene=rnz;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087376.1,similar to AA sequence:UniProtKB:P54548,protein motif:CLUSTERS:PRK00055,protein motif:Cdd:COG5212,protein motif:TIGRFAMs:TIGR02651,protein motif:Pfam:PF12706.1;locus_tag=22222_2#22_04076;product=Ribonuclease Z,Ribonuclease Z,ribonuclease Z,Low-affinity cAMP phosphodiesterase,ribonuclease Z,Beta-lactamase superfamily domain;protein_id=gnl|SC|22222_2#22_04076 ERS222222|SC|contig000020 Prodigal:2.60 CDS 23021 23326 . - 0 ID=22222_2#22_04077;gene=cbpM;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570915.1,similar to AA sequence:UniProtKB:P63264,protein motif:CLUSTERS:PRK10265;locus_tag=22222_2#22_04077;product=chaperone-modulator protein CbpM,Chaperone modulatory protein CbpM,chaperone-modulator protein CbpM;protein_id=gnl|SC|22222_2#22_04077 ERS222222|SC|contig000020 Prodigal:2.60 CDS 23326 24246 . - 0 ID=22222_2#22_04078;gene=cbpA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729840.1,similar to AA sequence:UniProtKB:P36659,protein motif:CLUSTERS:PRK10266,protein motif:Cdd:COG5407,protein motif:TIGRFAMs:TIGR02349,protein motif:Pfam:PF01556.12;locus_tag=22222_2#22_04078;product=curved DNA-binding protein,Curved DNA-binding protein,curved DNA-binding protein CbpA,Preprotein translocase subunit Sec63,chaperone protein DnaJ,DnaJ C terminal domain;protein_id=gnl|SC|22222_2#22_04078 ERS222222|SC|contig000020 Prodigal:2.60 CDS 24482 24844 . + 0 ID=22222_2#22_04079;gene=scsA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729841.1;locus_tag=22222_2#22_04079;product=copper-sensitivity suppressor membrane protein A;protein_id=gnl|SC|22222_2#22_04079 ERS222222|SC|contig000020 Prodigal:2.60 CDS 24893 26779 . + 0 ID=22222_2#22_04080;eC_number=1.8.1.8;gene=scsB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729842.1,similar to AA sequence:UniProtKB:P36655,protein motif:CLUSTERS:PRK00293,protein motif:Cdd:COG4233,protein motif:Pfam:PF02683.9;locus_tag=22222_2#22_04080;product=copper-sensitivity suppressor membrane protein B,Thiol:disulfide interchange protein DsbD precursor,thiol:disulfide interchange protein precursor,Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis,Cytochrome C biogenesis protein transmembrane region;protein_id=gnl|SC|22222_2#22_04080 ERS222222|SC|contig000020 Prodigal:2.60 CDS 26776 27399 . + 0 ID=22222_2#22_04081;gene=scsC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729843.1,similar to AA sequence:UniProtKB:O32218,protein motif:Cdd:COG1651,protein motif:Pfam:PF01323.14;locus_tag=22222_2#22_04081;product=copper-sensitivity secreted suppressor protein C,Thiol-disulfide oxidoreductase D,Protein-disulfide isomerase,DSBA-like thioredoxin domain;protein_id=gnl|SC|22222_2#22_04081 ERS222222|SC|contig000020 Prodigal:2.60 CDS 27389 27895 . + 0 ID=22222_2#22_04082;gene=resA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145985.1,similar to AA sequence:UniProtKB:P35160,protein motif:CLUSTERS:PRK03147,protein motif:TIGRFAMs:TIGR00385,protein motif:Pfam:PF08534.4;locus_tag=22222_2#22_04082;product=suppressor for copper-sensitivity D,Thiol-disulfide oxidoreductase resA,thiol-disulfide oxidoreductase,periplasmic protein thiol:disulfide oxidoreductases%2C DsbE subfamily,Redoxin;protein_id=gnl|SC|22222_2#22_04082 ERS222222|SC|contig000020 Prodigal:2.60 CDS 28028 29269 . + 0 ID=22222_2#22_04083;eC_number=3.1.3.10;gene=agp;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570908.1,similar to AA sequence:UniProtKB:P19926,protein motif:CLUSTERS:PRK10173,protein motif:Pfam:PF00328.1;locus_tag=22222_2#22_04083;product=glucose-1-phosphatase/inositol phosphatase,Glucose-1-phosphatase precursor,glucose-1-phosphatase/inositol phosphatase,Histidine phosphatase superfamily (branch 2);protein_id=gnl|SC|22222_2#22_04083 ERS222222|SC|contig000020 Prodigal:2.60 CDS 29303 29530 . - 0 ID=22222_2#22_04084;gene=yccJ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087385.1,similar to AA sequence:UniProtKB:P0AB14,protein motif:CLUSTERS:PRK10174;locus_tag=22222_2#22_04084;product=YccJ-like protein,hypothetical protein,hypothetical protein;protein_id=gnl|SC|22222_2#22_04084 ERS222222|SC|contig000020 Prodigal:2.60 CDS 29551 30147 . - 0 ID=22222_2#22_04085;gene=wrbA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729847.1,similar to AA sequence:UniProtKB:P0A8G6,protein motif:CLUSTERS:PRK03767,protein motif:TIGRFAMs:TIGR01755,protein motif:Pfam:PF03358.9;locus_tag=22222_2#22_04085;product=trp repressor binding protein,Trp repressor-binding protein,NAD(P)H:quinone oxidoreductase,NAD(P)H:quinone oxidoreductase%2C type IV,NADPH-dependent FMN reductase;protein_id=gnl|SC|22222_2#22_04085 ERS222222|SC|contig000020 Prodigal:2.60 CDS 30532 30699 . + 0 ID=22222_2#22_04086;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087756.1,protein motif:Pfam:PF10685.3;locus_tag=22222_2#22_04086;product=Conidiation-specific protein 10,Stress-induced bacterial acidophilic repeat motif;protein_id=gnl|SC|22222_2#22_04086 ERS222222|SC|contig000020 Prodigal:2.60 CDS 30836 31474 . + 0 ID=22222_2#22_04087;gene=rutR;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729849.1,similar to AA sequence:UniProtKB:P0ACU2,protein motif:CLUSTERS:PRK15008,protein motif:TIGRFAMs:TIGR03613,protein motif:Pfam:PF08362.5;locus_tag=22222_2#22_04087;product=transcriptional regulator,Rut operon repressor,HTH-type transcriptional regulator RutR,pyrimidine utilization regulatory protein R,YcdC-like protein%2C C-terminal region;protein_id=gnl|SC|22222_2#22_04087 ERS222222|SC|contig000020 Prodigal:2.60 CDS 31471 31866 . - 0 ID=22222_2#22_04088;inference=ab initio prediction:Prodigal:2.60,protein motif:Cdd:COG3755,protein motif:Pfam:PF07007.6;locus_tag=22222_2#22_04088;product=Uncharacterized protein conserved in bacteria,Protein of unknown function (DUF1311);protein_id=gnl|SC|22222_2#22_04088 ERS222222|SC|contig000020 Prodigal:2.60 CDS 31925 35887 . - 0 ID=22222_2#22_04089;gene=putA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002243116.1,similar to AA sequence:UniProtKB:P09546,protein motif:CLUSTERS:PRK11809,protein motif:Cdd:COG4230,protein motif:TIGRFAMs:TIGR01238,protein motif:Pfam:PF01619.12;locus_tag=22222_2#22_04089;product=trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase,Bifunctional protein putA,trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase,Delta 1-pyrroline-5-carboxylate dehydrogenase,delta-1-pyrroline-5-carboxylate dehydrogenase,Proline dehydrogenase;protein_id=gnl|SC|22222_2#22_04089 ERS222222|SC|contig000020 Prodigal:2.60 CDS 36309 37817 . + 0 ID=22222_2#22_04090;gene=putP;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002145994.1,similar to AA sequence:UniProtKB:P07117,protein motif:CLUSTERS:PRK15419,protein motif:Cdd:COG4145,protein motif:TIGRFAMs:TIGR02121,protein motif:Pfam:PF00474.11;locus_tag=22222_2#22_04090;product=sodium/proline symporter,Propionate transporter,proline:sodium symporter PutP,Na+/panthothenate symporter,sodium/proline symporter,Sodium:solute symporter family;protein_id=gnl|SC|22222_2#22_04090 ERS222222|SC|contig000020 Prodigal:2.60 CDS 38435 38731 . + 0 ID=22222_2#22_04091;inference=ab initio prediction:Prodigal:2.60;locus_tag=22222_2#22_04091;product=hypothetical protein;protein_id=gnl|SC|22222_2#22_04091 ERS222222|SC|contig000020 Prodigal:2.60 CDS 38710 39498 . + 0 ID=22222_2#22_04092;gene=phoH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729855.1,similar to AA sequence:UniProtKB:P0A9K1,protein motif:CLUSTERS:PRK10536,protein motif:Cdd:COG1875,protein motif:Pfam:PF02562.10;locus_tag=22222_2#22_04092;product=phosphate starvation-inducible protein PsiH,Phosphate starvation-inducible protein psiH,hypothetical protein,Predicted ATPase related to phosphate starvation-inducible protein PhoH,PhoH-like protein;protein_id=gnl|SC|22222_2#22_04092 ERS222222|SC|contig000020 Prodigal:2.60 CDS 39604 40485 . - 0 ID=22222_2#22_04093;gene=ybbH_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570898.1,similar to AA sequence:UniProtKB:Q45581,protein motif:CLUSTERS:PRK11337,protein motif:Cdd:COG2222,protein motif:TIGRFAMs:TIGR03127,protein motif:Pfam:PF01418.11;locus_tag=22222_2#22_04093;product=putative transcriptional regulator,Uncharacterized HTH-type transcriptional regulator ybbH,DNA-binding transcriptional repressor RpiR,Predicted phosphosugar isomerases,6-phospho 3-hexuloisomerase,Helix-turn-helix domain%2C rpiR family;protein_id=gnl|SC|22222_2#22_04093 ERS222222|SC|contig000020 Infernal:1.1 ncRNA 40486 40770 . + 0 ID=22222_2#22_04094;inference=COORDINATES:profile:Infernal:1.1;locus_tag=22222_2#22_04094;product=STnc500 ERS222222|SC|contig000020 Prodigal:2.60 CDS 40771 41673 . - 0 ID=22222_2#22_04095;gene=yidK;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002215057.1,similar to AA sequence:UniProtKB:P31448,protein motif:CLUSTERS:PRK10484,protein motif:Cdd:COG4146,protein motif:TIGRFAMs:TIGR00813,protein motif:Pfam:PF00474.11;locus_tag=22222_2#22_04095;product=sodium-glucose/galactose cotransporter,Uncharacterized symporter yidK,putative transporter,Predicted symporter,transporter%2C solute:sodium symporter (SSS) family,Sodium:solute symporter family;protein_id=gnl|SC|22222_2#22_04095 ERS222222|SC|contig000020 Prodigal:2.60 CDS 41741 42268 . - 0 ID=22222_2#22_04096;gene=sglT;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002215057.1,similar to AA sequence:UniProtKB:P96169,protein motif:CLUSTERS:PRK10484,protein motif:Cdd:COG4146,protein motif:TIGRFAMs:TIGR00813,protein motif:Pfam:PF00474.11;locus_tag=22222_2#22_04096;product=sodium-glucose/galactose cotransporter,Na(+)/glucose symporter,putative transporter,Predicted symporter,transporter%2C solute:sodium symporter (SSS) family,Sodium:solute symporter family;protein_id=gnl|SC|22222_2#22_04096 ERS222222|SC|contig000020 Prodigal:2.60 CDS 42605 43285 . - 0 ID=22222_2#22_04097;eC_number=5.1.3.9;gene=nanE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570896.2,similar to AA sequence:UniProtKB:P60668,protein motif:CLUSTERS:PRK01130,protein motif:Pfam:PF04131.8;locus_tag=22222_2#22_04097;product=N-acetylmannosamine-6-phosphate 2-epimerase,Putative N-acetylmannosamine-6-phosphate 2-epimerase,N-acetylmannosamine-6-phosphate 2-epimerase,Putative N-acetylmannosamine-6-phosphate epimerase;protein_id=gnl|SC|22222_2#22_04097 ERS222222|SC|contig000020 Prodigal:2.60 CDS 43804 44946 . + 0 ID=22222_2#22_04098;eC_number=5.1.3.24;gene=nanM;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570895.1,similar to AA sequence:UniProtKB:P44544,protein motif:CLUSTERS:PRK14131,protein motif:TIGRFAMs:TIGR03547,protein motif:Pfam:PF01344.19;locus_tag=22222_2#22_04098;product=N-acetylneuraminic acid mutarotase,N-acetylneuraminate epimerase precursor,N-acetylneuraminic acid mutarotase,mutatrotase%2C YjhT family,Kelch motif;protein_id=gnl|SC|22222_2#22_04098 ERS222222|SC|contig000020 Prodigal:2.60 CDS 44992 45684 . + 0 ID=22222_2#22_04099;gene=yiiy;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216068.1,similar to AA sequence:UniProtKB:Q934G3,protein motif:CLUSTERS:PRK09980,protein motif:Cdd:COG3203,protein motif:Pfam:PF06178.7;locus_tag=22222_2#22_04099;product=outer membrane protein,Oligogalacturonate-specific porin kdgM precursor,outer membrane porin L,Outer membrane protein (porin),Oligogalacturonate-specific porin protein (KdgM);protein_id=gnl|SC|22222_2#22_04099 ERS222222|SC|contig000020 Prodigal:2.60 CDS 45967 47247 . + 0 ID=22222_2#22_04100;gene=nanT_3;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570893.1,similar to AA sequence:UniProtKB:P41036,protein motif:CLUSTERS:PRK12307,protein motif:Cdd:COG2814,protein motif:TIGRFAMs:TIGR00891,protein motif:Pfam:PF00083.18;locus_tag=22222_2#22_04100;product=putative sialic acid transporter,Sialic acid permease,putative sialic acid transporter,Arabinose efflux permease,MFS transporter%2C sialate:H+ symporter (SHS) family,Sugar (and other) transporter;protein_id=gnl|SC|22222_2#22_04100 ERS222222|SC|contig000020 Prodigal:2.60 CDS 47261 48364 . + 0 ID=22222_2#22_04101;eC_number=1.1.1.292;gene=yjhC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216069.1,similar to AA sequence:UniProtKB:Q2I8V6,protein motif:CLUSTERS:PRK11579,protein motif:Pfam:PF01408.16;locus_tag=22222_2#22_04101;product=dehydrogenase-like protein,1%2C5-anhydro-D-fructose reductase,putative oxidoreductase,Oxidoreductase family%2C NAD-binding Rossmann fold;protein_id=gnl|SC|22222_2#22_04101 ERS222222|SC|contig000020 Aragorn:1.2.36 tRNA 48701 48788 . - 0 ID=22222_2#22_04102;inference=COORDINATES:profile:Aragorn:1.2.36;locus_tag=22222_2#22_04102;product=tRNA-Ser(gga) ERS222222|SC|contig000020 Prodigal:2.60 CDS 49024 49962 . + 0 ID=22222_2#22_04103;eC_number=1.1.1.79;gene=ghrA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729856.1,similar to AA sequence:UniProtKB:Q8ZQ30,protein motif:CLUSTERS:PRK15469,protein motif:Cdd:COG1932,protein motif:TIGRFAMs:TIGR01327,protein motif:Pfam:PF02826.13;locus_tag=22222_2#22_04103;product=2-hydroxyacid dehydrogenase,Glyoxylate/hydroxypyruvate reductase A,bifunctional glyoxylate/hydroxypyruvate reductase A,Phosphoserine aminotransferase,phosphoglycerate dehydrogenase,D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD binding domain;protein_id=gnl|SC|22222_2#22_04103 ERS222222|SC|contig000020 Prodigal:2.60 CDS 50047 50784 . + 0 ID=22222_2#22_04104;eC_number=3.1.3.-;gene=ycdX;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570887.1,similar to AA sequence:UniProtKB:P75914,protein motif:CLUSTERS:PRK09248,protein motif:Cdd:COG1387,protein motif:TIGRFAMs:TIGR01856,protein motif:Pfam:PF02811.13;locus_tag=22222_2#22_04104;product=putative hydrolase,Probable phosphatase YcdX,putative hydrolase,Histidinol phosphatase and related hydrolases of the PHP family,histidinol phosphate phosphatase%2C HisJ family,PHP domain;protein_id=gnl|SC|22222_2#22_04104 ERS222222|SC|contig000020 Prodigal:2.60 CDS 50808 51362 . + 0 ID=22222_2#22_04105;gene=ycdY;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002146908.1,similar to AA sequence:UniProtKB:P75915,protein motif:CLUSTERS:PRK11621,protein motif:Cdd:COG3381,protein motif:Pfam:PF02613.9;locus_tag=22222_2#22_04105;product=chaperone%2C TorD family,Chaperone protein YcdY,twin-argninine leader-binding protein DmsD,Uncharacterized component of anaerobic dehydrogenases,Nitrate reductase delta subunit;protein_id=gnl|SC|22222_2#22_04105 ERS222222|SC|contig000020 Prodigal:2.60 CDS 51451 51945 . + 0 ID=22222_2#22_04106;gene=ycdZ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P75916,protein motif:Pfam:PF06496.5;locus_tag=22222_2#22_04106;product=Inner membrane protein ycdZ,Protein of unknown function (DUF1097);protein_id=gnl|SC|22222_2#22_04106 ERS222222|SC|contig000020 Prodigal:2.60 CDS 51983 52816 . - 0 ID=22222_2#22_04107;gene=csgG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729860.1,protein motif:CLUSTERS:PRK15184,protein motif:Pfam:PF03783.8;locus_tag=22222_2#22_04107;product=assembly/transport component in curli production,curli production assembly/transport protein CsgG,Curli production assembly/transport component CsgG;protein_id=gnl|SC|22222_2#22_04107 ERS222222|SC|contig000020 Prodigal:2.60 CDS 52843 53259 . - 0 ID=22222_2#22_04108;gene=csgF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729861.1,protein motif:CLUSTERS:PRK10050,protein motif:Pfam:PF10614.3;locus_tag=22222_2#22_04108;product=assembly/transport component in curli production,curli assembly protein CsgF,Curli production assembly/transport component CsgF;protein_id=gnl|SC|22222_2#22_04108 ERS222222|SC|contig000020 Prodigal:2.60 CDS 53286 53681 . - 0 ID=22222_2#22_04109;gene=csgE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729862.1,protein motif:CLUSTERS:PRK10386,protein motif:Pfam:PF10627.3;locus_tag=22222_2#22_04109;product=assembly/transport component in curli production,curli assembly protein CsgE,Curli assembly protein CsgE;protein_id=gnl|SC|22222_2#22_04109 ERS222222|SC|contig000020 Prodigal:2.60 CDS 53710 54336 . - 0 ID=22222_2#22_04110;gene=csgD;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729863.1,similar to AA sequence:UniProtKB:P52106,protein motif:CLUSTERS:PRK10100,protein motif:Cdd:COG2909,protein motif:TIGRFAMs:TIGR03020,protein motif:Pfam:PF00196.13;locus_tag=22222_2#22_04110;product=regulatory protein,CsgBAC operon transcriptional regulatory protein,DNA-binding transcriptional regulator CsgD,ATP-dependent transcriptional regulator,transcriptional regulator EpsA,Bacterial regulatory proteins%2C luxR family;protein_id=gnl|SC|22222_2#22_04110 ERS222222|SC|contig000020 Prodigal:2.60 CDS 55092 55547 . + 0 ID=22222_2#22_04111;gene=csgB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729864.1,similar to AA sequence:UniProtKB:P0A1E9,protein motif:CLUSTERS:PRK10101,protein motif:Pfam:PF07012.6;locus_tag=22222_2#22_04111;product=nucleation component of curlin monomers,Fimbrin SEF17 minor subunit,curlin minor subunit CsgB,Curlin associated repeat;protein_id=gnl|SC|22222_2#22_04111 ERS222222|SC|contig000020 Prodigal:2.60 CDS 55589 56044 . + 0 ID=22222_2#22_04112;gene=csgA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729865.1,similar to AA sequence:UniProtKB:P0A1E7,protein motif:CLUSTERS:PRK10051,protein motif:Pfam:PF07012.6;locus_tag=22222_2#22_04112;product=major curlin subunit,Fimbrin SEF17,major curlin subunit,Curlin associated repeat;protein_id=gnl|SC|22222_2#22_04112 ERS222222|SC|contig000020 Prodigal:2.60 CDS 56106 56432 . + 0 ID=22222_2#22_04113;gene=csgC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_007470940.1,similar to AA sequence:UniProtKB:P0A1Z9,protein motif:CLUSTERS:PRK10102,protein motif:Pfam:PF10610.3;locus_tag=22222_2#22_04113;product=curli assembly protein CsgC,Curli assembly protein CsgC precursor,curli assembly protein CsgC,Thin aggregative fimbriae synthesis protein;protein_id=gnl|SC|22222_2#22_04113 ERS222222|SC|contig000020 Prodigal:2.60 CDS 56564 56884 . + 0 ID=22222_2#22_04114;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087410.1;locus_tag=22222_2#22_04114;product=Fimbrial protein;protein_id=gnl|SC|22222_2#22_04114 ERS222222|SC|contig000020 Prodigal:2.60 CDS 56972 57511 . + 0 ID=22222_2#22_04115;eC_number=3.5.1.-;gene=ymdB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087411.1,similar to AA sequence:UniProtKB:P0A8D6,protein motif:CLUSTERS:PRK00431,protein motif:Pfam:PF01661.15;locus_tag=22222_2#22_04115;product=Macro domain%2C possibly ADP-ribose binding module,O-acetyl-ADP-ribose deacetylase,RNase III inhibitor,Macro domain;protein_id=gnl|SC|22222_2#22_04115 ERS222222|SC|contig000020 Prodigal:2.60 CDS 57450 58934 . + 0 ID=22222_2#22_04116;eC_number=2.7.8.-;gene=ybhO_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570877.2,similar to AA sequence:UniProtKB:P0AA84,protein motif:CLUSTERS:PRK01642,protein motif:TIGRFAMs:TIGR04265;locus_tag=22222_2#22_04116;product=phospholipase,Putative cardiolipin synthase YbhO,cardiolipin synthetase,cardiolipin synthase;protein_id=gnl|SC|22222_2#22_04116 ERS222222|SC|contig000020 Prodigal:2.60 CDS 58951 60105 . - 0 ID=22222_2#22_04117;eC_number=2.1.-.-;gene=mdoC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570876.1,similar to AA sequence:UniProtKB:P75920,protein motif:CLUSTERS:PRK03854,protein motif:Cdd:COG3274,protein motif:Pfam:PF01757.16;locus_tag=22222_2#22_04117;product=glucans biosynthesis protein,Glucans biosynthesis protein C,glucans biosynthesis protein,Uncharacterized protein conserved in bacteria,Acyltransferase family;protein_id=gnl|SC|22222_2#22_04117 ERS222222|SC|contig000020 Prodigal:2.60 CDS 60359 61912 . + 0 ID=22222_2#22_04118;gene=mdoG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570875.1,similar to AA sequence:UniProtKB:P33136,protein motif:CLUSTERS:PRK13274,protein motif:Cdd:COG3131,protein motif:Pfam:PF04349.6;locus_tag=22222_2#22_04118;product=glucan biosynthesis protein G,Glucans biosynthesis protein G precursor,glucan biosynthesis protein G,Periplasmic glucans biosynthesis protein,Periplasmic glucan biosynthesis protein%2C MdoG;protein_id=gnl|SC|22222_2#22_04118 ERS222222|SC|contig000020 Prodigal:2.60 CDS 61905 64448 . + 0 ID=22222_2#22_04119;eC_number=2.4.1.-;gene=mdoH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216085.1,similar to AA sequence:UniProtKB:P62517,protein motif:CLUSTERS:PRK05454,protein motif:Pfam:PF00535.20;locus_tag=22222_2#22_04119;product=glucosyltransferase MdoH,Glucans biosynthesis glucosyltransferase H,glucosyltransferase MdoH,Glycosyl transferase family 2;protein_id=gnl|SC|22222_2#22_04119 ERS222222|SC|contig000020 Prodigal:2.60 CDS 64522 64749 . + 0 ID=22222_2#22_04120;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729872.1,protein motif:CLUSTERS:PRK10175,protein motif:Cdd:COG5645,protein motif:Pfam:PF07119.6;locus_tag=22222_2#22_04120;product=lipoprotein,lipoprotein,Predicted periplasmic lipoprotein,Protein of unknown function (DUF1375);protein_id=gnl|SC|22222_2#22_04120 ERS222222|SC|contig000020 Prodigal:2.60 CDS 64750 65124 . - 0 ID=22222_2#22_04121;gene=msyB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729873.1,protein motif:CLUSTERS:PRK11467;locus_tag=22222_2#22_04121;product=acidic protein MsyB,secY/secA suppressor protein;protein_id=gnl|SC|22222_2#22_04121 ERS222222|SC|contig000020 Prodigal:2.60 CDS 65206 66420 . - 0 ID=22222_2#22_04122;gene=yceE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729874.1,similar to AA sequence:UniProtKB:O31762,protein motif:CLUSTERS:PRK09874,protein motif:Cdd:COG2814,protein motif:TIGRFAMs:TIGR00880,protein motif:Pfam:PF07690.10;locus_tag=22222_2#22_04122;product=membrane transport protein,Bacillibactin exporter,drug efflux system protein MdtG,Arabinose efflux permease,multidrug resistance protein,Major Facilitator Superfamily;protein_id=gnl|SC|22222_2#22_04122 ERS222222|SC|contig000020 Prodigal:2.60 CDS 66575 67495 . - 0 ID=22222_2#22_04123;eC_number=2.3.1.-;gene=htrB_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729875.1,similar to AA sequence:UniProtKB:P0ACV0,protein motif:CLUSTERS:PRK06860,protein motif:Cdd:COG1560,protein motif:TIGRFAMs:TIGR02207,protein motif:Pfam:PF03279.7;locus_tag=22222_2#22_04123;product=lipid A biosynthesis lauroyl acyltransferase,Lipid A biosynthesis lauroyl acyltransferase,lipid A biosynthesis lauroyl acyltransferase,Lauroyl/myristoyl acyltransferase,lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase,Bacterial lipid A biosynthesis acyltransferase;protein_id=gnl|SC|22222_2#22_04123 ERS222222|SC|contig000020 Prodigal:2.60 CDS 67715 68767 . + 0 ID=22222_2#22_04124;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087420.1,protein motif:CLUSTERS:PRK00142,protein motif:Cdd:COG2210,protein motif:Pfam:PF00581.14;locus_tag=22222_2#22_04124;product=Rhodanese-like sulfurtransferase,putative rhodanese-related sulfurtransferase,Uncharacterized conserved protein,Rhodanese-like domain;protein_id=gnl|SC|22222_2#22_04124 ERS222222|SC|contig000020 Prodigal:2.60 CDS 68819 69394 . - 0 ID=22222_2#22_04125;gene=yceI_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087865.1,similar to AA sequence:UniProtKB:P0A8X2,protein motif:CLUSTERS:PRK03757,protein motif:Cdd:COG2353,protein motif:Pfam:PF04264.7;locus_tag=22222_2#22_04125;product=YceI protein,hypothetical protein,hypothetical protein,Uncharacterized conserved protein,YceI-like domain;protein_id=gnl|SC|22222_2#22_04125 ERS222222|SC|contig000020 Prodigal:2.60 CDS 69391 69795 . - 0 ID=22222_2#22_04126;gene=yceJ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_005212184.1,similar to AA sequence:UniProtKB:P75925,protein motif:CLUSTERS:PRK11513,protein motif:Pfam:PF00033.13;locus_tag=22222_2#22_04126;product=cytochrome b561-like protein 2,Cytochrome b561 homolog 2,cytochrome b561,Cytochrome b(N-terminal)/b6/petB;protein_id=gnl|SC|22222_2#22_04126 ERS222222|SC|contig000020 Prodigal:2.60 CDS 70226 70339 . - 0 ID=22222_2#22_04127;gene=yceO;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216094.1,similar to AA sequence:UniProtKB:P64442,protein motif:Pfam:PF10968.2;locus_tag=22222_2#22_04127;product=inner membrane protein,hypothetical protein,Protein of unknown function (DUF2770);protein_id=gnl|SC|22222_2#22_04127 ERS222222|SC|contig000020 Prodigal:2.60 CDS 70380 71498 . - 0 ID=22222_2#22_04128;eC_number=1.5.3.1,1.5.3.-;gene=solA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729880.1,similar to AA sequence:UniProtKB:P40874,protein motif:CLUSTERS:PRK11259,protein motif:Cdd:COG4121,protein motif:TIGRFAMs:TIGR01377,protein motif:Pfam:PF01266.18;locus_tag=22222_2#22_04128;product=sarcosine oxidase,N-methyl-L-tryptophan oxidase,N-methyltryptophan oxidase,Uncharacterized conserved protein,sarcosine oxidase%2C monomeric form,FAD dependent oxidoreductase;protein_id=gnl|SC|22222_2#22_04128 ERS222222|SC|contig000020 Prodigal:2.60 CDS 71611 71865 . - 0 ID=22222_2#22_04129;gene=bssS;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570863.1,protein motif:CLUSTERS:PRK12301;locus_tag=22222_2#22_04129;product=biofilm formation regulatory protein BssS,biofilm formation regulatory protein BssS;protein_id=gnl|SC|22222_2#22_04129 ERS222222|SC|contig000020 Prodigal:2.60 CDS 72155 72418 . - 0 ID=22222_2#22_04130;gene=dinI_3;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729882.1,similar to AA sequence:UniProtKB:P0ABR1,protein motif:CLUSTERS:PRK10597,protein motif:Pfam:PF06183.7;locus_tag=22222_2#22_04130;product=damage-inducible protein,DNA-damage-inducible protein I,DNA damage-inducible protein I,DinI-like family;protein_id=gnl|SC|22222_2#22_04130 ERS222222|SC|contig000020 Prodigal:2.60 CDS 72492 73538 . - 0 ID=22222_2#22_04131;eC_number=3.5.2.3,3.5.2.3;gene=pyrC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729883.1,similar to AA sequence:UniProtKB:P06204,protein motif:CLUSTERS:PRK05451,protein motif:Cdd:COG0418,protein motif:TIGRFAMs:TIGR00856,protein motif:Pfam:PF01979.14;locus_tag=22222_2#22_04131;product=dihydroorotase,Dihydroorotase,dihydroorotase,Dihydroorotase,dihydroorotase%2C homodimeric type,Amidohydrolase family;protein_id=gnl|SC|22222_2#22_04131 ERS222222|SC|contig000020 Prodigal:2.60 CDS 73642 74268 . - 0 ID=22222_2#22_04132;gene=yceB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_007470922.1,similar to AA sequence:UniProtKB:P0AB26,protein motif:CLUSTERS:PRK10598,protein motif:Pfam:PF07273.6;locus_tag=22222_2#22_04132;product=lipoprotein,Uncharacterized lipoprotein yceB precursor,lipoprotein,Protein of unknown function (DUF1439);protein_id=gnl|SC|22222_2#22_04132 ERS222222|SC|contig000020 Prodigal:2.60 CDS 74326 74973 . - 0 ID=22222_2#22_04133;gene=grxB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729885.1,similar to AA sequence:UniProtKB:P0AC59,protein motif:CLUSTERS:PRK10387,protein motif:TIGRFAMs:TIGR02182,protein motif:Pfam:PF04399.7;locus_tag=22222_2#22_04133;product=glutaredoxin,Glutaredoxin-2,glutaredoxin 2,glutaredoxin%2C GrxB family,Glutaredoxin 2%2C C terminal domain;protein_id=gnl|SC|22222_2#22_04133 ERS222222|SC|contig000020 Prodigal:2.60 CDS 75037 76245 . - 0 ID=22222_2#22_04134;gene=mdtH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570858.1,similar to AA sequence:UniProtKB:P69367,protein motif:CLUSTERS:PRK11646,protein motif:Cdd:COG2814,protein motif:TIGRFAMs:TIGR00880,protein motif:Pfam:PF07690.10;locus_tag=22222_2#22_04134;product=multidrug resistance protein MdtH,Multidrug resistance protein MdtH,multidrug resistance protein MdtH,Arabinose efflux permease,multidrug resistance protein,Major Facilitator Superfamily;protein_id=gnl|SC|22222_2#22_04134 ERS222222|SC|contig000020 Prodigal:2.60 CDS 76482 77066 . + 0 ID=22222_2#22_04135;eC_number=2.3.1.-;gene=rimJ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729887.1,similar to AA sequence:UniProtKB:P96579,protein motif:CLUSTERS:PRK10809,protein motif:TIGRFAMs:TIGR03585,protein motif:Pfam:PF00583.18;locus_tag=22222_2#22_04135;product=ribosomal-protein-alanine acetyltransferase,Putative ribosomal N-acetyltransferase YdaF,ribosomal-protein-S5-alanine N-acetyltransferase,pseudaminic acid biosynthesis N-acetyl transferase,Acetyltransferase (GNAT) family;protein_id=gnl|SC|22222_2#22_04135 ERS222222|SC|contig000020 Prodigal:2.60 CDS 77102 77749 . + 0 ID=22222_2#22_04136;gene=yceH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P29217,protein motif:CLUSTERS:PRK11239,protein motif:Cdd:COG3132,protein motif:Pfam:PF04337.6;locus_tag=22222_2#22_04136;product=G20.3,hypothetical protein,Uncharacterized protein conserved in bacteria,Protein of unknown function%2C DUF480;protein_id=gnl|SC|22222_2#22_04136 ERS222222|SC|contig000020 Prodigal:2.60 CDS 77751 78674 . + 0 ID=22222_2#22_04137;gene=mviM;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729889.1,similar to AA sequence:UniProtKB:P75931,protein motif:CLUSTERS:PRK11579,protein motif:Cdd:COG3132,protein motif:Pfam:PF01408.16;locus_tag=22222_2#22_04137;product=virulence factor MviM,Virulence factor mviM homolog,putative oxidoreductase,Uncharacterized protein conserved in bacteria,Oxidoreductase family%2C NAD-binding Rossmann fold;protein_id=gnl|SC|22222_2#22_04137 ERS222222|SC|contig000020 Prodigal:2.60 CDS 78939 80513 . + 0 ID=22222_2#22_04138;gene=mviN;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002146873.1,similar to AA sequence:UniProtKB:P37169,protein motif:TIGRFAMs:TIGR01695,protein motif:Pfam:PF03023.8;locus_tag=22222_2#22_04138;product=integral membrane protein MviN,hypothetical protein,integral membrane protein MviN,MviN-like protein;protein_id=gnl|SC|22222_2#22_04138 ERS222222|SC|contig000020 Prodigal:2.60 CDS 80595 81017 . - 0 ID=22222_2#22_04139;gene=flgN;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729891.1,protein motif:CLUSTERS:PRK15459,protein motif:Pfam:PF05130.6;locus_tag=22222_2#22_04139;product=flagella synthesis protein FlgN,flagella synthesis chaperone protein FlgN,FlgN protein;protein_id=gnl|SC|22222_2#22_04139 ERS222222|SC|contig000020 Prodigal:2.60 CDS 81022 81315 . - 0 ID=22222_2#22_04140;gene=flgM;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729892.1,similar to AA sequence:UniProtKB:P26477,protein motif:CLUSTERS:PRK10810,protein motif:TIGRFAMs:TIGR03824,protein motif:Pfam:PF04316.7;locus_tag=22222_2#22_04140;product=negative regulator of flagellin synthesis (anti-sigma factor),Anti-sigma-28 factor,anti-sigma28 factor FlgM,flagellar biosynthesis anti-sigma factor FlgM,Anti-sigma-28 factor%2C FlgM;protein_id=gnl|SC|22222_2#22_04140 ERS222222|SC|contig000020 Prodigal:2.60 CDS 81407 82066 . - 0 ID=22222_2#22_04141;gene=flgA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729893.1,protein motif:CLUSTERS:PRK07018,protein motif:TIGRFAMs:TIGR03170,protein motif:Pfam:PF08666.6;locus_tag=22222_2#22_04141;product=flagellar basal body P-ring protein FlgA,flagellar basal body P-ring biosynthesis protein FlgA,flagella basal body P-ring formation protein FlgA,SAF domain;protein_id=gnl|SC|22222_2#22_04141 ERS222222|SC|contig000020 Prodigal:2.60 CDS 82223 82639 . + 0 ID=22222_2#22_04142;gene=flgB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729894.1,similar to AA sequence:UniProtKB:P16437,protein motif:CLUSTERS:PRK05680,protein motif:Cdd:COG1815,protein motif:TIGRFAMs:TIGR01396,protein motif:Pfam:PF00460.14;locus_tag=22222_2#22_04142;product=flagellar basal-body rod protein FlgB,Putative proximal rod protein,flagellar basal body rod protein FlgB,Flagellar basal body protein,flagellar basal-body rod protein FlgB,Flagella basal body rod protein;protein_id=gnl|SC|22222_2#22_04142 ERS222222|SC|contig000020 Prodigal:2.60 CDS 82643 83047 . + 0 ID=22222_2#22_04143;gene=flgC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729895.1,similar to AA sequence:UniProtKB:P0A1I7,protein motif:CLUSTERS:PRK05681,protein motif:Cdd:COG4786,protein motif:TIGRFAMs:TIGR01395,protein motif:Pfam:PF06429.7;locus_tag=22222_2#22_04143;product=flagellar basal-body rod protein FlgC,Putative proximal rod protein,flagellar basal body rod protein FlgC,Flagellar basal body rod protein,flagellar basal-body rod protein FlgC,Domain of unknown function (DUF1078);protein_id=gnl|SC|22222_2#22_04143 ERS222222|SC|contig000020 Prodigal:2.60 CDS 83059 83757 . + 0 ID=22222_2#22_04144;gene=flgD;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729896.1,similar to AA sequence:UniProtKB:P0A1I9,protein motif:CLUSTERS:PRK06655,protein motif:Cdd:COG1843,protein motif:Pfam:PF03963.8;locus_tag=22222_2#22_04144;product=flagellar hook formation protein FlgD,Basal-body rod modification protein flgD,flagellar basal body rod modification protein,Flagellar hook capping protein,Flagellar hook capping protein;protein_id=gnl|SC|22222_2#22_04144 ERS222222|SC|contig000020 Prodigal:2.60 CDS 83784 84995 . + 0 ID=22222_2#22_04145;gene=flgE;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_002146866.1,similar to AA sequence:UniProtKB:P0A1J1,protein motif:CLUSTERS:PRK05682,protein motif:Cdd:COG1749,protein motif:TIGRFAMs:TIGR03506,protein motif:Pfam:PF07559.8;locus_tag=22222_2#22_04145;product=flagellar hook protein FlgE,Flagellar hook protein flgE,flagellar hook protein FlgE,Flagellar hook protein FlgE,flagellar hook-basal body protein,Flagellar basal body protein FlaE;protein_id=gnl|SC|22222_2#22_04145 ERS222222|SC|contig000020 Prodigal:2.60 CDS 85016 85771 . + 0 ID=22222_2#22_04146;gene=flgF;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729898.1,similar to AA sequence:UniProtKB:P16323,protein motif:CLUSTERS:PRK12640,protein motif:Cdd:COG4787,protein motif:TIGRFAMs:TIGR03506,protein motif:Pfam:PF06429.7;locus_tag=22222_2#22_04146;product=flagellar basal-body rod protein FlgF,Putative proximal rod protein,flagellar basal body rod protein FlgF,Flagellar basal body rod protein,flagellar hook-basal body protein,Domain of unknown function (DUF1078);protein_id=gnl|SC|22222_2#22_04146 ERS222222|SC|contig000020 Prodigal:2.60 CDS 85785 86567 . + 0 ID=22222_2#22_04147;gene=flgG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729899.1,similar to AA sequence:UniProtKB:P0A1J3,protein motif:CLUSTERS:PRK12694,protein motif:Cdd:COG4786,protein motif:TIGRFAMs:TIGR02488,protein motif:Pfam:PF06429.7;locus_tag=22222_2#22_04147;product=flagellar basal-body rod protein FlgG (distal rod protein),Distal rod protein,flagellar basal body rod protein FlgG,Flagellar basal body rod protein,flagellar basal-body rod protein FlgG,Domain of unknown function (DUF1078);protein_id=gnl|SC|22222_2#22_04147 ERS222222|SC|contig000020 Prodigal:2.60 CDS 86655 87320 . + 0 ID=22222_2#22_04148;gene=flgH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729900.1,similar to AA sequence:UniProtKB:Q9PPM0,protein motif:CLUSTERS:PRK00249,protein motif:Pfam:PF02107.10;locus_tag=22222_2#22_04148;product=flagellar L-ring protein,Basal body L-ring protein,flagellar basal body L-ring protein,Flagellar L-ring protein;protein_id=gnl|SC|22222_2#22_04148 ERS222222|SC|contig000020 Prodigal:2.60 CDS 87332 88429 . + 0 ID=22222_2#22_04149;gene=flgI;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729901.1,similar to AA sequence:UniProtKB:Q9PMJ8,protein motif:CLUSTERS:PRK05303,protein motif:Cdd:COG1706,protein motif:Pfam:PF02119.10;locus_tag=22222_2#22_04149;product=flagellar P-ring protein,Basal body P-ring protein,flagellar basal body P-ring protein,Flagellar basal-body P-ring protein,Flagellar P-ring protein;protein_id=gnl|SC|22222_2#22_04149 ERS222222|SC|contig000020 Prodigal:2.60 CDS 88429 89379 . + 0 ID=22222_2#22_04150;eC_number=3.2.1.-;gene=flgJ;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729902.1,similar to AA sequence:UniProtKB:P15931,protein motif:CLUSTERS:PRK05684,protein motif:Cdd:COG3951,protein motif:TIGRFAMs:TIGR02541,protein motif:Pfam:PF01832.14;locus_tag=22222_2#22_04150;product=flagellar protein FlgJ,Peptidoglycan hydrolase flgJ,flagellar rod assembly protein/muramidase FlgJ,Rod binding protein,flagellar rod assembly protein/muramidase FlgJ,Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase;protein_id=gnl|SC|22222_2#22_04150 ERS222222|SC|contig000020 Prodigal:2.60 CDS 89444 91105 . + 0 ID=22222_2#22_04151;gene=flgK;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729903.1,similar to AA sequence:UniProtKB:P0A1J5,protein motif:CLUSTERS:PRK08147,protein motif:Cdd:COG1749,protein motif:TIGRFAMs:TIGR02492,protein motif:Pfam:PF06429.7;locus_tag=22222_2#22_04151;product=flagellar hook-associated protein 1,Flagellar hook-associated protein 1,flagellar hook-associated protein FlgK,Flagellar hook protein FlgE,flagellar hook-associated protein FlgK,Domain of unknown function (DUF1078);protein_id=gnl|SC|22222_2#22_04151 ERS222222|SC|contig000020 Prodigal:2.60 CDS 91120 92073 . + 0 ID=22222_2#22_04152;gene=flgL;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729904.1,similar to AA sequence:UniProtKB:P16326,protein motif:CLUSTERS:PRK08027,protein motif:Cdd:COG3951,protein motif:TIGRFAMs:TIGR02550,protein motif:Pfam:PF00669.14;locus_tag=22222_2#22_04152;product=flagellar hook-associated protein 3,Hook-filament junction protein,flagellar hook-associated protein FlgL,Rod binding protein,flagellar hook-associated protein 3,Bacterial flagellin N-terminal helical region;protein_id=gnl|SC|22222_2#22_04152 ERS222222|SC|contig000020 Infernal:1.1 ncRNA 92162 92255 . + 0 ID=22222_2#22_04153;inference=COORDINATES:profile:Infernal:1.1;locus_tag=22222_2#22_04153;product=STnc490k ##FASTA >ERS222222|SC|contig000020 TATCCGGGCAGCCCGTTTACGGGCCGTAAGTAACGAAGTTTGATGCAAATGTCAGATCGT ATGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGACTTACAGGCGCATCAGAAAAACCTCCG GCTATGCCGGAGGATATTTATTTTTTGGGCGCATAGAATATAGTTAGAAAATACTGCTAG AACATTTCCCGAAAAAACGGACTACGTGGGTTATTAGTTTCTTTTCGTTTCTTGATGTGT CTATTTATTGAAGATGTAGACCATTCTGGGAGATGAAGGATGCCCCATCTCTTTCAGAAT AATGTTGGTATATTCGACAACAGGGCCTCTTGAATGATTTTCTTCTTTATCCTGAAGATG GGTCAGTGCATGTACAACTTCATGAGTAAATGAACGTTTTGTGTCAAAAAGTTGTCTTCC TTCGTTACTTTCATAATGTTCGGTATATGAATAATCAGAATCGTCCAGATTGAGACAAAT AACTTTCCTGCCTTCTGAAAGTTTGAAGTGTTACTGAGCCACGGTAGTTTCAAAGGCTTC GCCTGCCCCCGGTAGCCAGCGCTGCTCCACATAATGTAGTTCTTTTTCATATGCGTAATT CATCAGTCTGCGGAATGTTTCGCTTTGGGTATACGCATTTTGAAGTACGGAGGATAGTTC ATCGTAGCATTCGTCATAAGTGTCGTCATCAAATTCTGTATCAGGGTCTATTCCACCCGC GCCTGAGATAAGGTACTCCACCACACACTCTGACTCCAGACGGAATTCACTGTTTATGGC AAGGCTGTCATGAGCAAGGCGTAGCCGTGAGGAGTTTGGTGCATGTTCGGGAATATCGGG GAAAACAGGTGTATCTGCGGTATTTAATCCATATGTGGATACTCCGCTTTGAGGTATTAA TCTGTAGGTGACCGGAAGCATAATTTCTTATTACCTGACTGCAATTATGAATTATTTAAA TTAAACAATAATAGTGTTTTTAGTTAATGTGCAACATACAGATAACGCTATGATTCAGGC AAAACCAACAAGTAATACGCTGAAAATGTTATATATAATGAAGCTTAGGGGCGGGGTTTG TTTAATAAAACAAGGAGGGCTTCTGTTTGAATACTTCTTGTTTATAAAATCCCTTTATCT CGACTAAAATATTGGATGGGGGAAAAGCGTTTAATCATTGTAATCCGGGAGTGGAGTAGG GGTATGTTGACTACCTGTCAGATCGGCTCCTGATAATGCTTTCGCTAAAGTTAGAGCTAT CTTATCTAATTTTGCACCATTTAGTTTGGTGTAAGTTAAGTCTGAGCCGAATAGAATTGC AGCGGTTAAGTTTACACCGGACATGTTAGCGCAAGTCAGGTCTGCGTGAGTCAGGTTTGC TTTAGTCATGTTTGAACCCATTAGATTTACAGAGTGTAGATTTGCACAACACAAATTTGC ACCGACTAAATTTACATTAGATAGATTTGTTTAACGGAAATCTGCATTAGAAGCATCTAT GTCTGACAAATCTTCTCCCTGGAAATCTTTATAAGCTAGGTTTACTCCGCGCAGGTTCAG AAAACCATCCTCGGTTATAAGTGAATCAGGCTATTGTATATTATGTTTACTCATCAGTTT TAACATTCGACATACATTCCAAAATCTCTCACAATCAACTTTATCCGTTACAGTTTTTCC ATTTTTGTTCACTTCAATAGTGACCATGGGATACGTATTTTCGGATGCTGCTCCACATGA CAGACATATAGTACACCCGTTGACATCCTCCAAAAATATTTTATTACCATCGAAGAAAGC ATCTTTATTTACATATAATAATGATGTGGTCAATTTTCCAATTACCTCCCAAAAGCATCT TTCATTGCTTCTTCTTACTCCACCACAGGTAAAAAAATTGACAAACCATTCCAGTATACC GCGTGGTGAAGTTGCACTTTTCATTGCTTCTTACGTACCGGTACCGGCCGCATGCAAATA TCTTAATATATTTTCTGGGGACGCGTTAGTTAATGGCATTTTGATTCCTTCTTATGGAAG TGAGTCGATTCCTTATAGGTGTGAGTCAAGTCACATTTATACAAGGAATAATAAAAAAAG ATATAAGGTGATTTTTGTATTTAGAGCTTTGGATGAGTATGAGTAGGTGTCTGGCATCTG ACAAGAGGCGATGATATCTGCCATAACGGTGAAGCAGAAGTAATATCACCCGTGAATAAT AAGATTATCCTTGCTATTGACTTCCTTCATTTACAGCATAGCTTACGCCTCATCATCATT GAATAAACAATTAAGTTTGTTGAGCGAAAATTAACTTAAAGAAAAAATAATAAGCTTTAA TATTTTTTGCAGCATTTCAACTTATAGCAGAAAAAATGTGCGTAGATGGCGTAAAAACCT GATGAGCAGGAATACTTACACACTAAAAATGCACCCGCAAACAGAGCAAAATGAGAAAGA GGAACGTTTGCCCTTTACATTTCCACCAAAGAATCTGGTTTTGTCTCTTGTAAAGGGCAT ACGTATCGCGTTTTATCTCATTAAGAAAGTATATTGACGTATTAAATTATGCATAATGCT CTTTCAATTGCTTCACGTTTGAAATGAATAATACAAAACCAGTGAGCGCCTCTTCTTCGG TACTGGTTTGCGGCAAGCGATAAAGCGCCACTAAAGCAGTATTGTCTGCATCAGCGCCGA TAGTGACGGCGCTGGCGTAGTTAAGACGTAAAAAATGCTGCAAAGTCAGAGTGTCGTCAG GCAGTGGCATAAAGGGACAGCACATTTCCAGTATATGATCGGATTCATTAAAATAAACCT GTATCCCATCATCAATGATAAGCAGTGGCTCAACTTCTGGCGCATCCAGGCCTAACGCGT CATATAAACGATTTAATAGACTTTCCATATAGATACCTCAAGACTCAAGATGTGATTAAT GAAGAAATACCTTTTACTGACTGCCAAATATTATCATCCCCAACTCGTTTTTGATAGGAA AGATTGAGCACCTCTGGCGATAAATTTTTCATTACTTTGTTTCCCGCCCCGCCCGTATTT TGTTTCTGAATCTCCAGGTTACCGCTATTCAGTAATACTTTTTGGAAAATTTTCTGTCCA CCGCTATCCGGAAGACTACCAGGCGCACTTAACATATGGGTCTGATGGAAAGAAATGAGC TCTCGCTTGATTTCTGAATCCATCATCCCTGTACGATCTTTGCCGCTTTTACAATTCCAG GCGGGCACCGCGTCAATTTCATGGGCTAACATGGCAAGGCGTTGTGCGAGTTTATAGGGT TCGCCGCCATCTTTATGATGTTGGTTATTTTTCCAGATATCCTTAATCTGGCGCGCTAAT GTATTGACGACCTCATAATTATCCGGGTATTGCGCCAGCCATTCGCCAACCCAGCCACCT GGTCTGGCTTCAGGGCGTAAATCATTGCCTAATAACTGATGTAGCGCTTCGGCATTATAG CTATCTGATGCTTTAAGGCCAAAGCCGAGCTTGAGCGCCAGCTCATTAACACCCACATTA AATGCGGCGACGTCCGGTTTTATTTTTACCGTCTGTAGATCGCCATCTTTATTGCGGATT TTTAAATGAATCATTTTTCCCGGCTGGGTCAACGATTGCCATGCGCGCATTTGATCCTCG ACCATAGTTCCCTCTTTGCCGAAAATATTCGACGCGGTGAGTAACCCGACGGATACCAGT TTCAGGCTTACCGCTTCGCCCTCTAAGGCTCTGTTAAGCAACTCAGGTTTACTAAAAAGT GCCGCAGCTAATACTTCTTTGGCTTTGTTTTCAGCGCCGGCCTGACGCAGAAGCGGATCT TTTTCATGATAGGGGGAAAGCACACCATGACGTATCCCGCAAAAAAGCGTTTTATCTTTA CCGTCCTCATGCACACTCACCGTGGACATCCACAAATTATTGGCGTGATGAATATTCTTG GTATCCCAACTGCATACGCCCTTTCCCTCATAAGCACTGGGAAAGATATCTTTTGCGCCG ATTTTCATCTCTGCGGCAGGGAGCTGCGTGTTGGTATAGTGATGCCCGTTATGCGTGAGT GTATTTTTTATGGTTTGCCAGGGCTGGTTATTGAGCTGCTTGACCTGAGCATCTCTAAAC GCTACTGCCGCAAAGCGATGAGCTTCTTTTGCAGGTAAGCCATTTTGCTGCTGAGTGCGT GCTGCAATAAGTTCGATAAGATTTTTCTTCAATGCTTTTGCCGCAGCTTCTTCTTGTTTT GTTGCTGGCCGGTCCGCTTTAACTTTGGCTAACTCCATTTGGTTTGCCATTGACGTTAGA ACCGGGTCTTGTTTACCCAGAACGGTTGCCGCGACGGTAAGAAGATCGCGCTGTAAGTTA TAGAGGTTATGCAGCGAGTGGTTAGACGTCTTCTGATGCTGTAGATAATTCCCCCATGTC GCGCCAGGTTCTCGCAGGACAATAATTTCCGGGCGAGCGTCGGGCGCTTTAGCCGGCGCT TTGCCCTGGCCTGAGAGAATCTGCATTCCGTTGTATAAGGTTTTTTGTAGGCTTTTAAAA GCCTCCTGGGTTTTTAGTGAAGCTGAGTGATAGAAGCTCTGTATTTGCATAGCGTTTTTA ATATTCCTGAATAGGGGAGTGGGAACATTCAACAGGGTTAACAATCTTTTAAAAGGATGT GACTTTTATGCACCAGGAACTTTAAAAAAATGTCCTTTTTAATGAGGAAACGCTTCTGAT CAGGCGGGGAGGCATCCTGACGTCCATACGTAGTGGCGATCATGGGGGAGATCGGTACAT CAAATGTTCATAAAATCTACAAACTTCACAATTTAGGGCACAACTTTTATTGAAAACCCA CCTTCTTGATTCAGATCAAATTCACCGATTTACTCCTGCGTAAAGTAACGGCGTTACATC AAATGTTATACAGGTGTGTGTATGCCAGCAAAGCCCCGGACGAGTAAGACCGTGACGAAG AATATTCGTTTTTCCTATTCCATGCTTGAACAGATAGAATTCGCGTTGAAATCTGAAAAG ACGCGGAATTTTTCAGCATGGGTAAAAGAGGCCTGTCGGGAAAAGTTATGTAACACGGGA CATAAGCTGTAGTTATCGTCTTATGTAAGAGGGGGCGGCCATTTTGAAAAGAACAACGTG CTTATATACCTCCTGGGTCTTTGCCGCTTTTGTCTCTCTGCTGATATTTGTCTGGAGTGT CATAAACTATCCTCTCTATGAATCCATAATAATTATTGTCTTTTATATCTGGCTAATTCT GGTACCGCTTTATCTTATTGTGTATGAGTGGCTAATAGATTGTCATTAAATTTATGGCTG CGTACTTGAAAAGTGATATTTCATATCTGTGCGGTAAGTCATTGTCGTAATAATATTATT GGTCAGGCGACGGGCGAGCGTCTGCGCATTTTGCATCGTTTTATCTTCAAAATTTTGCAG TAAGCGTTGTGCTTCTTTCGGATGCGACGCATATAATCTCAGATAGCTCTGCTCCATCTT ATACTGTTGCTTAGCTGTTTGCTGTTCAAATGTTTTCCAGGCATGTTGCACATCTGGCGC AAACGTATTGTAGTCTTGCATAACCAGTGTTTGCAGCGTGCGGAATGTCCAGTAGGTAGA GTCGTTGCTCGCCCGATCGGTTCCTTTATCATCTCCGGGTTGATAATGACGCATCCCCTG GTAATAGGGGAGATAGACGCTAAGAGATGGCATTCCATAGGCGATGTATTCTACGTTGCC GATAGCCTGCGGTAATTTCGGTCTGACCTGTAAAATATGTGACTCCTGGGTACGAAAAAC GGATATAGGTCGCCATGGTTCTTGTGGATTATGACTGGCATAAGGGTCGTGCGACGTTCC CTGATAGTGATTGCGTAACGCGTTTTTTACTGCCGCCACGCTGATCTTCGTTATTGGCGT TAAAAAAACAGAAAATGTTTCCCCTTCGCTAACGACCGTATCCAGATGCGGATTAAACTG GTGTTGTAGCGTCCAGACGCGCGGATAATTATAGGTGGTATCGTTTTTGTTATCCTGCGA ATAGGCTTGATGAAAGTCGAATTCGCCGCGGGCCGGATCATATAATCCCTGCTTTTTCGC AAAGCTTACTAACGTTGGTGACGCCATATAATTCGCGTTATCATTCGGATCGTAATGGCG TAAACGTCCCTGATTGGCGGAAACGAAATAGCTATCTGCCGGAAGTCGTACTGCCAGCCA TTGATGTCCGCTTCCCGTCTCCAGATACCATATCTCTTTGCTATCAATAAACGCGACGCC GAAACCTTCGCCCGCGCCTTTTTGTTCAATAATATCTCCCAGTAATTTGGCGCCCTGACG CGCCGATTGCGCCACTGGCAGGATCACGGACTCAATGGCGTCTTCCGTGATTCCCGTTTT TGTCACGTAAGGATCGGCAGCCAGCGCCGCTCTGCCGTTGTAAATGGTTTCCGTTGCGCT CATTCCGACGCCCGCCGAATTGAAACCGGCTTCACCCATGGCGTTATCGTTAGTATCAAA GTCATGAATCGCCGTATAGCGCATCGCTGTCTCCGGAAGCGGCCAGCTAAAATTGTTGCG ATGTGCTTTATACTCGCCTTGTTGATGAAACGCGACGGGATGAATAACCTTATGCTTGGC GTTATTTGCCGAGCCATCCTCGTTGCGCGCGATAATAAAGGAGCCGTCAGCCGAAGCCTG ATTGCCTACCAAAAGGGTAGTACAGGCGATGACTTTACCCATACCCAGCAGCGTAACGGC GAAAGCAAGATACTTTTTCATAAAGGTTCCCACTGAATAACGCGTTATGGGATGAATTGA CCCTGGATTGGAAACCGAGAAAGTGATCGAGCCAGCAATATTCTTTACCGGCATCCTTTA TTTTCTTTTTATTGAGGTTGTATTGATAACCACAGCCCTGTGGCAGGGAAGGGGAACAGA ACCTGTACTGACCTTAGCTATCACCGCTATCAGGCAGACGAACCGAAAAGATATTATGTT CATCGGCATAGCGGTAAGATGCCGAGCCACCGTGCAATAGGGCAATCGCGTTAACTAACG ATAACCCCAGGCCGAAACCGGCAGTGTAGCGGGCATTATCTCCTCGCCAAAAACGCCGGA AAAGCTTATCCGCATCGGCGGTGGGGCTGCCCGGATTAGCGACCCGAATTTCTGCAACGT TATCATCATAAGCGCTTTCAATACGTATCACGGCGTTTTCATCAGAATAACGGATGGCAT TCGTCAGCAGGTTTGAGAGCACTCTTTGTAATAATATTTCGTCAGCCCATACCGTTCCCT GACATTGATTTATAAAACAGATGTGCTTCTCTTCGGCAAGGGGGCTAAGATAATCCAGCA TATTTTCGACCAGCGCATTGAGCGAAACAGGCTGTTTTTTTACCGCTATATTCTGGTGCT CCGCGCGTGCCAGAAAGAGAATATTTTCTGTCAGTCGCGACAGTCCCTCCAGCTCTTCAA TATTATCGACAAGGGCTTGTTGATACTCTTCGGCGCTGCGTTCCTGACTCAGCATAACCT GATTCTTCCCCAGTAAAATATTAACCGGCGTGCGCAGCTCATGCGCCAGATCGTCGGCAA ATTGGTTCAGGCGTTCAAAATCGTCGGAAAGCTTCTGGCGCATGGTATTTAGCGCTTGCC CAAGCGGCCTGAGCTCGACGGGTAACGCCTGTTCCGCCAGCGGCTGGCGAAGTGTGCCGC TATCTGTCGCCGCGGTGAGTCGGCTGAGCGACGTAATGGCCCGCAGCCCGTTTCTGATGA CTAATGGACTGAGCGCCGAACAGACGAGGATCGCGATAAGGCTAATCAGCAAACTGTTGC GGCGATATTGCGCCAGCATTTGCCGCCTTTCCGTCGCCAGCCTGGCAATAGTAAGGGTCA GCGGGTTATCGCCGCTTCTGGCGTTTACTCGTACCGCGGTCAGCTCCGTGCCTTGTACCG CCTGGCGAAATAAGGTTTCGCGGGTGATGTTTTTAGCCAGCGGAATCTCGTTAAAGCGTT GGTCGGGGATGCCGCTATGATTAATCGCAACATTATGGCCTGTTGCTGAGTGGATCAATA AGATATCCTGCTTCGTATCCACCATCCGATTGAAATAGAGCGGCAGATTTTCCGGCCTGG CGCCATCCAGTAACAGTTGCTGCATTTGCGCCGCCCGATTTATTAGCGTCATATCATCCC GATACGTTAATTCTTTGCTCAGCGCGTTATAGAGCGTCCAGCTAATGCCGGTACAGGCGA GGATAAGTATGGCGATAAAAGAAATTGTCAGGCGCAGCGTCATTGATAACTTAACCATTC TGCGACGTTTCCGCCTGTAATCGATAACCCATCCCCTGGACGGTCATAATGAGCTTCTTT TCAAATGGATCGTCTACTTTGGCGCGCAGCCGACGAATCGCGACATCAACGGTGTTGGTT TCACTATCAAAGTTAATTCCCCAAACTTCGCTGGCGATCGCGGTTCGGGGCACGATTTCC CCTGCCCGGGACGCCAGTAACCAGAGGAGCAGGAATTCTTTGCGGGTCAGGGAAATCGGT TTGCCATTTCGTAACACCGATTGCTTTGTGGCATCCATGTCCAGACCATTGATCGTCAGT CGGGTAAAGACCGGGACATGCTGTCTGAGTTGAGCTCTCACCCGGGCCAGCAGTTCGGCG AAGGAAAAAGGCTTAACAAGGTAATCATTAGCGCCCGCCTCAAGACCTTTGACGCGATCC TCAACCGAGTCGCGCGCCGTCAGGCAAATAACAGGGGGCTGATATGCAGTGCGCAACGCG CGTAAAACCTGCCATCCATCAAGCCCCGGCAGCATAATATCAAGAATAATCAATGAATAA TGTTCCTGAAGGGCTAGGTGTAATCCGTCTCGTCCATCACAGGCATAATCAACCACATAG CCTGCCTCCGTGAGTCCCTGACGTACCCACTCAATGGTTTTCTGGTTATCTTCAATCAAT AAAATCTTCATCAACGCAGTATGCCATAGGCTTGTTAGCGAATCCGTAAATCTCCAACAA GATGACATAATTGTCATGTCCGTGTAAGGTTAATCCTGGACGCGCCAGATATATTTTCCT GCATCAATACCGTAAAGGAGTGAAGCATGAAACGATATATACTGGCTACCGCGATAGCGT CTCTTGTTGCAGCCCCGGCAATGGCGCTGGCCGCTGGCAGCAATATTCTCAGCGTACATA TTCTCGATCAGCAAACAGGCAAACCAGCGCCCGGCGTGGAGGTGGTACTGGAGCAGAAAA AGGATAACGGATGGACGCAATTAAACACCGGGCATACCGACCAGGATGGACGAATTAAAG CACTGTGGCCCGAAAAAGCTGCCGCGCCGGGGGATTATCGCGTTATTTTTAAAACCGGCC AGTATTTTGAAAGTAAAAAACTGGACACGTTTTTCCCGGAGATTCCCGTCGAGTTTCATA TCAGCAAAACGAATGAGCACTATCATGTGCCGCTGTTATTAAGTCAGTATGGTTATTCAA CCTATCGCGGGAGCTAATTTAGAGCCTATCCTATTAGGGCTATTTTACTTGCCATTTTGG TCCTGGGCAGTGCTCGCCAAAACGCGTTAGCGTTTTGAACGCCGCTTGCGGCGGCCCGAA GGGCGAGCGTAGCGAGTCAAACCTCACGTACAACGTGTACGCTCCGGTTTTTGCGCGCTG TCCGTGTCCAAACAGGCTGCGCCAATAACGCCTGGTGGGACAGGCTCTTAGATTTTATTA ATCGCCGGGATTTATGGCGAGCAAACATCGCGGCGGGAATAAAAATCTTCAGCGTATCGA CTCTCCTCCCACAAGCGGTGGTTATCCCGCTTGTGGGTATGAGTGACGGTTAAACAGGCG CTTCCATCTCAAGTCTGACCGGATGAAAACGGCGTTTGAAATAAATCAGGCCATGCCCCT CCTGGCTAAGAATAATATTTTTGATCGCCACCAGATACACCAGATGCGTGCCAATGGTTT GTACCTCGCTGATCTCGCCTTCAAGACTGGCCAGCGCGCCGTTAAGTACCGGCTGGCCCA GCGGCCCGTTTTGCCAACATGGCTGGTGAAAACGCTCCTCCATCGCCATCCCCGTCATAC CGGCAAAGTGGCGCGCCATCAGCTCCTGCTCATGGTTAAGTACATTAATGCACAGCCTGC CGTTGCCCTGAAAAACGGGGTTCATGGCGCTATTGGCATTAATACATACCATCACGGAGG GCGGCGTATCAGTGACTGAGCAAACCGCTGTTGCGGTGATACCGCAGCGTCCGGCGTGAC CCGCCGTGGTTACGATGTTGACCGCTGCCGCCAGACTTGCCATCGCATCGCGAAAACGCA GACGTTGTTCATCTACTTGCATGAGAACCTCCTGCCGCGTTATTTCAGCAGCTTATCCAG TTGATTGATGTCGTCGTTATTGTGCAAATGCGAAACCGTCCAGCCATTCTGATCGTATTC GGAGAGGCAGCGATCGACCATTGCCATCATCTTATCCATATTGCCGGAGCTCTGGGCCTG ACGCAGACACTGCAGACGAATTTCATCCTGGCTGCCCGAGTAGTTAATCTCGTACAGCTC ATGGCGACCGCCAAACTCGCTGCCGATGGCATCCCACATCAATTTAAGAATTTTGATACG TTCAACATGGTCCATTCCGTTAGAGCCGCGTACGTATTTCGCCAGGTACTGGTCGATTTG CGGATTATTCAGATCGCGGGCGCTGGAAGGCAGGTAAATCAGGCCGCTGGTAACGTTACG TTCAATAATATTTTTAATTTTCGCGTAGGCCATTGGGGCCATCACACGATAGGTTTGCAG CGCGGCGTGGTCCGGTAGCCAGGCGCCGTTTACCCACGGGGTTGCTTCAGAACACATAGA ATCGCTCAATGCCCAGAACATATTGCGCCAGGCCACGACTTCGCCGAGATCGGCCTGCAC GCCCCGGAACTCTACGGTACCCGTACATTCGAGCGATTTTTTCAGCAGCGCGGTAATGAA ATCAAGTTTTACCGCCAGACGAACACAGGCTTGCAGTGGATACATACGGGCAAAGCCGCC TTCCATCGTCCAGCGACGACAACGATCGAAATCACGGTAAATTAATACGTTTTCCCACGG GATCAGCACCTTGTCCATCACCAGAATGGCATCGTTTTCATCAAAACGGCTGGAGAGGGG ATAATCAAACGGCGAGCCCGTCGCGCCCGCGACCATTTCATACGAGGCGCGCGAAATAAG TTTTACGCCTTCGGCATCCATTGGCGCGACAAACATCAGAGCAAAATCCGGGTTTTCGCC CATCACCTGGGCTGAGCCGAAACCAATCATGTTGTAGTGAGTCAGGGCGGAGTTAGTGGC GACAACTTTCGCCCCGCTGACAATAATCCCGGCGTCCGTCTCTTTCTCCAGCTTGATATA GACGTCTTTCACTTCGTCGGCAGGTTTGTGGCGGTCAATGGGCGGGTTGACGATTGCATG GTTAAAGTACAGGCCGGTCTCCTGAATACGGGTGTACCAGTTACGGGCGTTCTGCTCAAA CTGGCCGTAGAAGGCTGGGTTAGCGCCCAGAGCGCAGCCAAAGGCGGCTTTGTAATCCGG TGTGCGTCCCATCCAGCCGTAACTCAGGCGTGACCACTCGGCGATAGCATCACGCTGTTG GCGCAGATCGTCTGCGCTTTTCGCCACGCGGAAAAATTTATGCGTATAACCGCCGCTGCC GGTATCGGTATTCCAGCACAGGGTGTAAGCGGGAGGGGATTCCCGTGTCGGCGGCGTGGG AAGGTAAGAATACTATGCTTCCGCTTCGCTATCAGGATGCTGGCGCCCCAGAGCAATAAG ATCGTCCAGCAGCAGCATCAATTGCTGTGTTTTTTCGGGCGTGAAATCGGCCTCAATTTT TCGATAAGCCTCTTCTACCTCGCTCCGGGCACGGGCGTACAACGTTTGTCCCTGCTCCGT CAACATGACATATAACTTACGCTGATCGTTAACCGGCTTGAGTCGCAACACCAGTCCGTC TCGCTCCATGCGCGTCAATATTCCGGTCAGACTTGGACGCAAAATACAGGTACGAAAGGC CAGCTCGTGAAAATCCATAGAGGGGCTATCGGCCAGGATTCGCACAATGCGCCATTGCTG GTCGGTCAGATTGTGGCTTTTAACGATGGGGCGGAAATAGGTCATTGCCGCTTCGCGCGC CTGAAGCAAGGCGATGGTTAATGAATCATGCATAAGCGTTTCTCTTTTGCAGAATTATTA ATACCTGAATAATCGTGTTTACCGATGTGAGCTATGACATCTGTTTTATGTCCAAAGTTT AATAGAAACAAGGGGTTTTATTTAACTATTTGATATATATGTATTTAATAATAAATTTGT GAAAATATTGTTAATCACATCATAAATACTTTACTTAAGCTTGCTAAATGTACAGCGAAA GCATAAATCTAATCATTAATATGTTAATGAAATCACAGCCCGTTAAATCGGCCTGAGGAG TTTATGTATGAAGGGTACTGTTTTCGCCGTTGCGTTAAACCATCGCAGCCAGCTTGATGC CTGGCAAGAGGCTTTCTCTCAGCCTCCCTATAATGCGCCGCCTAAAACCGCAGTGTGGTT CATCAAGCCGCGTAATACGGTGATTCGTCACGGCGAACCCATTCCTTATCCGCAGGGAGA AAAGGTACTGAGCGGCGCGACAGTGGCGCTCATTGTGGGGAAAACCGCCAGCCGGATACG CCCTGAAGCGGCGGCGGACTATATCGCCGGGTATGCGCTGGCTAACGAGGTCAGCCTGCC GGAAGAGAGCTTTTATCGCCCGGCGATTAAAGCGAAATGTCGCGATGGCTTTTGCCCGCT GGGTGAAATGGCGCCGCTGAGTGATGTGGATAATCTCACCATTATCACTGAAATCAACGG ACGAGAAGCGGACCACTGGAATACTGCCGATTTACAGCGTAGCGCCGCACAACTGCTTAG CGCGTTAAGTGAGTTCGCTACACTTAACCCTGGCGATGCGATCTTACTTGGTACGCCGCA GAATCGCGTTGCGCTGCGTCCCGGCGATCGGGTGCGTATTCTGGCGAAAGGTTTACCCGC GCTGGAAAATCCGGTTGTCGCAGAAGATGAATTCGCCCGCCACCAGACGTTTACGTGGCC GCTGTCAGCGACGGGAACGTTATTTGCGCTGGGGTTGAACTACGCCGATCACGCCAGCGA GCTGGCATTTACGCCGCCGAAAGAGCCGCTGGTATTTATCAAAGCGCCAAACACCTTTAC CGAACATCACCAAACGTCGGTGCGCCCGAACAACGTCGAATATATGCACTACGAAGCCGA GCTGGTCGTGGTGATTGGCAAAACGGCGCGTAAGGTGAGCGAAGCCGAAGCCATGGAGTA TGTGGCCGGTTACACCGTCTGTAACGACTACGCGATCCGCGACTATCTGGAAAACTACTA CCGTCCGAATCTGCGGGTAAAAAGCCGCGACGGCCTGACGCCGATAGGCCCGTGGATTGT GGATAAAGAGGCGGTTTCTGATCCGCACAACCTGACGTTACGCACCTTTGTCAACGGTGA GCTGCGGCAGGAAGGGACGACCGCCGATCTGATCTTCAGCATCCCGTTCCTGATTTCTTA TCTGAGCGAATTTATGACGTTGCAACCGGGCGACATGATTGCCACCGGTACGCCGAAAGG GCTGTCCGATGTGGTGCCGGGGGATGAAGTTGTCGTTGAAGTAGAAGGCGTGGGTCGCCT GGTTAACCGAATCGTCAGTGAGGAGAGCGCAAAATGAAGAAAATAAATCATTGGATTAAC GGCAAAAACGTTGCAGGTAACGACTACTTCCAGACCACTAACCCGGCGACCGGTGATGTG CTGGCGGAAGTAGCCTCCGGCGGTGAAGCAGAAGTGAACCAGGCTGTCGCGGCGGCAAAA GAGGCGTTCCCGAAATGGGCCAACCTGCCGATGAAAGAGCGCGCGCGCCTGATGCGCCGC CTTGGCGACCTGATTGACCAGCATGTGCCGGAAATCGCGGCGATGGAAACCGCCGACACC GGCCTGCCTATTCACCAGACTAAAACGTGCTGATCCCGCGCGCCTCGCATAACTTCGAAT TCTTCGCCGAAGTGTGCCAGCAGATGAACGGCAAGACCTATCCGGTTGACGATAAAATGC TCAATTATACGCTGGTGCAGCCCGTCGGCGTCTGCGCGCTGGTGTCGCCGTGGAACGTGC CGTTTATGACCGCGACTTGGAAAGTTGCGCCGTGCCTGGCGCTGGGTAACACCGCGGTGC TCAAAATGTCCGAGCTGTCGCCGCTGACTGCCGACAGGCTGGGCGAGCTGGCACTGGAGG CAGGAATTCCGGCAGGCGTGCTGAACGTGGTGCAGGGCTACGGCGCGACGGCGGGCGATG CGCTGGTACGCCACCATGACGTGCGTGCGGTGTCGTTTACCGGCGGTACCGCCACCGGTC GCAATATCATGAAAAATGCCGGGCTGAAAAAATACTCGATGGAGCTGGGCGGCAAATCGC CGGTGCTGATTTTTGAAGACGCCGACATTGAGCGCGCGCTGGACGCCGCGCTGTTCACCA TCTTCTCGATCAACGGCGAACGCTGCACCGCTGGGTCGCGCATCTTTATCCAGCAGAGCA TTTACCCTGAGTTCGTGAAGCGCTTTGCCGAACGCGCGAATCGCCTGCGTGTCGGCGATC CGACCGACCCGAACACCCAGGTCGGCGCGCTGATTAGCCAACAGCACTGGGAGAAAGTCT CCGGTTATATCCGCCTCGGCATTGAAGAGGGGGCAACGCTGCTGGCGGGCGGTGCGGAAA AACCCACTGACCTGCCTGCGCATCTGAAAGGCGGTAACTTCCTGCGCCCAACCGTGCTGG CCGATGTCGACAACCGTATGCGCGTTGCGCAGGAAGAGATCTTTGGGCCGGTCGCCTGCC TGCTGCCATTCAAAGACGAAGCGGAAGGGTTACGTTTGGCGAACGATGTGGAATACGGTC TGGCCTCTTATATCTGGACCCAGGACGTGAGCAAAGTGTTGCGCCTGGCGCGTGGGATTG AAGCCGGCATGGTCTTCGTCAACACCCAGAACGTCCGCGACCTGCGCCAGCCGTTCGGCG GCGTGAAAGCCTCCGGTACCGGGCGCGAAGGCGGCGAATATAGCTTCGAAGTGTTTGCGG AAATGAAAAACGTCTGCATCTCAATGGGCGACCATCCTATCCCAAAATGGGGAGTTTGAT ATGGGCAAGTTAGCGTTAGCAGCAAAAATTACCCACGTGCCGTCGATGTATCTTTCTGAA CTGCCAGGAAAAAATCACGGTTGTCGTCAGGCAGCCATTGATGGGCATATTGAAATTGGC AAGCGTTGCCGCGAAATGGGCGTTGACACCATTATCGTATTCGACACCCACTGGCTGGTG AATAGCGCTTACCACATTAATTGTGCCGACCATTTCCAGGGCGTCTATACCAGCAACGAA TTGCCGCACTTTATTCGCGACATGACCTATGACTATGACGGTAATCCGGCGCTCGGCCAT CTGATCGCCGACGAGGCGGTCAAACTGGGCGTGCGCGCCAAAGCGCACAACATCCCGAGC CTGAAGCTGGAGTATGGCACGCTGGTGCCGATGCGCTACATGAACAGCGACAAGCACTTC AAAGTGGTCTCCATCTCGGCGTTCTGCACTGTGCATGATTTTGCCGACAGCCGCAAACTG GGCGAAGCCATTCTCAAGGCGATTGAGAAATATGACGGTACCGTAGCGGTATTCGCCAGT GGTTCTCTGTCGCACCGTTTTATTGACGACCAACGGGCGGAAGAGGGGATGAACAGCTAC ACCCGCGAGTTCGATCATCAAATGGACGAGCGCGTGGTCAAGCTGTGGCGCGAAGGCAAA TTCAAGGAGTTTTGCACCATGTTGCCGGAGTACGCCGACTACTGCTACGGCGAAGGCAAC ATGCACGACACGGTCATGCTACTGGGAATGCTGGGGTGGGACAAATACGACGGCAAGGTG GAGTTCATCACCGACCTGTTCGCCAGCTCCGGTACCGGCCAGGTAAACGCTGTTTTCCCG CTGCCTGCGTAAGGGGGGTTTATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGC GAGCAGGCTGATTTACCAAGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCCGCCACCGGG ATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCT GACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCCGGGCGCAGC CTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCC GACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTACATCCAACG CTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAGCACACTCTTTCGCCCGGT GGCGCTGCGCTGACCGGGCCTACAAAAAAACGATGCACGAAGCAGTACCGAACCGTAGGC CGGGTAAGACGCACCCGCGTCGCCACCCGGCGCAGCAGCACCGAATGAGGTAACAGGAAG CAACTATGCTCGATAAACAGACCCATACCCTGATCGCTCAGCGACTTAATCAGGCTGAAA AACAGCGTGAACAGATTCGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAAGATG CCTATGCCGTACAGCGTGAATGGGTCAATATCAAGATTGCCGAAGGGCGCACGCTCAAAG GCCACAAAATCGGCCTGACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGG ATTACGGCGCGCTGCTTGACGATATGTTCTTCCATGACGGCGGAGATATCCCCACCGACC GTTTTATCGTCCCGCGTATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCTGCGCG GCCCTCACTGCACGCTGTTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGG AACTGATTGACGCCCGCAGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGT TCGACACCATTTCCGACAACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCCCATCA AACCAGACGAGCTGGATCTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGTGATCG AAGAAACCGGCGTCGCCGCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGG CGAACAAGCTTGCCCCCTACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCT CGTTCACCCGCCCGGTGCCGGCGCGCAAGGGCGACACCTTCCATGTCGATTACGGCAACA TGGGCGCGATCAGTTGCCGGTTTGTGTAAGGAAAAAACGATGAAAAATGCTTTCAAAGAC GCGTTAAAAGCGGGGCGCCCGCAAATCGGTTTGTGGCTGGGGCTTGCCAACAGTTACAGC GCTGAACTGTTAGCGGGCGCCGGCTTCGACTGGCTACTGATTGACGGTGAACACGCGCCA AACAACGTGCAGACGGTGTTGACCCAGTTGCAGGCGATTGCGCCTTATCCCAGCCAGCCG GTGGTGCGTCCGTCATGGAACGATCCGGTACAGATTAAGCAACTGCTCGACGTCGGCGCG CAAACGCTGCTGATACCGATGGTGCAGAATGCCGATGAAGCGCGAAACGCCGTGGCGGCT ACGCGTTATCCGCCTGCCGGTATTCGCGGCGTGGGCAGCGCGCTGGCGCGGGCATCGCGC TGGAATCGCATTCCGGACTATCTCCACCAGGCCAACGACGCCATGTGCGTACTGGTGCAG ATTGAAACGCGTGAGGCGATGAGCAATCTGGCGTCAATTCTCGACGTGGATGGCATTGAC GGCGTGTTTATTGGCCCGGCGGATCTCAGCGCCGATATGGGCTTTGCCGGCAATCCGCAG CACCCGGAAGTGCAGGCGGCGATTGAGAACGCCATCGTGCAGATACGCGCGGCGGGGAAA GCGCCGGGGATTCTGATGGCCAATGAAGCACTGGCGAAACGTTATCTGGAACTGGGGGCG CTATTTGTCGCCGTCGGCGTTGACACCACGCTGCTGGCGCGCGGAGCGGAGGCGCTGGCG GCGCGCTTTGGCGCAGAAAAAAAACTGTCCGGTGCGTCCGGCGTCTATTAAGCCTGGGCC GGTAAGCGCAGCGCTACCGGGCAACCGTAGTACCCTACAAAATTCCCATCAGAGGAAAAA AAATGAGCGACACATCATCTGCACTTCCGGAAAGCCCCGAGTCTGTCGGTTCGCACAACG CGCTCAGCACGGGTCAACAAACCGTCATAAATAAACTGTTCCGCCGACTGATCGTATTTT TATTCGTGTTGTTTATCTTCTCGTTTTTAGACCGTATCAACATCGGTTTTGCCGGGTTGA CGATGGGGCAGGATCTGGGGTTAAGCGCCACCATGTTTGGTCTTGCCACGACGCTGTTTT ACGCCACCTACGTCATTTTCGGCATTCCCAGCAACGTGATGTTGAGCATCGTCGGCGCCC GCCGCTGGATTGCGACCATTATGGTGCTATGGGGCATTGCATCTACCGCCACGATGTTCG CGGTGGGACCGAAAAGCCTGTATGTGCTGCGAATGCTGGTGGGCATTACCGAAGCGGGCT TTTTGCCAGGAATATTGCTCTATTTAACCTACTGGTTCCCGGCATTTTTCCGCGCCCGCG CCAACGCATTATTTATGATTGCCATGCCGGCCACTACCGCGTTGGGGTCAATTGTCTCCG GCTATATTTTATCGCTGGACGGCATATTCAATCTGCATGGATGGCAGTGGTTATTCCTGT TGGAAGGATTTCCGTCAGTTTTGTTAGGCATTATGGTCTGGTTTTACCTGGATGATACCC CGGCAAAAGCCAAATGGCTGACGGCAGAGGATAAAAAATGTTTGCAGGAGATGATGGATA ATGATCGCCTGACGCTGGTTCAGCCTGAGGGGGCCATCAGCCATAACGCCATGCAGCAGC GTAGCCTGTGGCGCGAAGTATTCACGCCAATTGTACTGATGTATACGCTGGCCTATTTTT GCCTTACCAATACGCTTAGCGCCATTAGTATCTGGACGCCGCAAATCCTGAAAAGTTTTA ATGAAGGCAGCAGCAATATCACCATCGGCCTGCTGGCGGCGATCCCGCAGATTTGTACTG TTCTGGGCATGATTTACTGGAGCCGCCATTCGGACAAACATCAGGAGCGTAAACACCACA CTGCGTTACCGTTCCTGTTTGCCGCCGCGGGCTGGCTGCTGGCGTCGGCGACCGACCGTA ACCTGATCCAGCTCCTGGGGATCGTGATGGCATCCACGGGTTCCTTTAGCGCGATGGCGA TCTTCTGGACCACGCCGGATCAGTCGATCAGTTTACGCGCCAGGGCGATAGGCATTGCGG TCATCAATGCCACCGGCAATATTGGCTCCGCGCTCAGCCCGGTTATGATTGGCTGGCTAA AAGATATCACTGGTAGCTTCAATAGCGGACTCTGGTTTGTCGCTTCTCTGTTAGTCGTCG GCGCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCGCGCGCCACCCCTTGAG GAGAAACTATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGACGAAA GCATGGGCAGTAACGATGTGCATTATCAGTCGTTTGCTCGTATGGCGGATTTCTTTGGTC GTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTCTTGATACCGGGC AGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTGCTAA CGCCGCCCTCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTTCTGA CGGTACGCGAAGAGCTGGTTTGGCCGCTGCTGGAAGTGCTTTATCCCGGCACCAGAGAGG CCTTCGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACGAGCTGGCGGCGC TCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGCGAAC ATACCTTGGTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAGCTGG ACGATCATGCCGCAACCGGGATGCGCGGTGAACTGAAACTTTTTCAGCGCTTTACCCTGT TAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCTGTGAGTTGCATA TTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAACGCC TGATTTTTGATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAATGCTG TCAACGAGATCGCCTGGCAATTAGGTTTTAAAGATCCGGCTTATTTCGCCCGTTTCTTTA ATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTCCTTCTTTTCTCA ACTAAGAAGAGTAAAAACATGATGAAAAAAAGCGTCGCTATGCTGGCGGTTTGTATGCTG GCGCAAAGCCACCTTGCCATTGCTGCCGGTGCTCCTGCGCCTCAAGAGATCAACATTGTT TTACTGGGCACCAAAGGCGGGCCTTCTTTGCTCAATACAGCCAGACTACCGCAAGCGACG GCGCTCACTATCGGCGATAAGATATGGCTGATAGATGCCGGCTACGGCGCCAGTCTGCAA CTGGTGAAAAATGGCATTCCACTGCGCAACATCAATACTATTTTGCTCACCCATCTGCAC AGCGACCACATACTGGATTATCCTTCCTTGCTGATGAATGCCTGGGCAAGTGGCCTGAAA GACCATACCATACAGGTTTATGGCCCGCCGGGAACCCAGGCGATGACGAAGGCTAGCTGG AAGGTCTTTGACAGGGATATCACGTTACGCATGGAAGAAGAGGGGAAACCCGATCCGCGC AACCTGGTTAAGGCGACCGATATCGGCCAGGGCGTCATCTATAAAGATGAACTGGTCACA ATAAGCGCGCTGAAAGTGCCTCATTCCCCTTTCCCGGACGGTGAAGCGTTTGCTTACCGT TTTGATACTCAGGGTAAGCGAATCGTCTTCTCTGGCGATACGTCCTGGTTTCCTCCGCTT GCAACGTTTGCCCAGGGGGCGGATATCCTGGTACATGAGGCGGTACATGTCCCTTCGGTA GCAAAACTGGCTAATAGTATTGGCAACGGAAAAACGCTGGCTGAAGCGATTGCGTCGCAT CACACCACGATTGAAGATGTCGGTAAGATTGCTCGCGAGGCCCACGTGAAAAAACTGGTG TTAAGTCATCTGGTGCCTGCGACGGTTGCGGATGACGTCTGGCAACAGGAAGCCATGAAA AATTACCCGGGCCCTGTCATTGTCGGTCATGACAATATGACGATAAGCGTACCGTAAGCA TCAGGGCAGGGGTAAACCAACGGGCTGACATCATGTCAGCCCGTTATGCTTTTGGCGATC AGCATGACGCGCAGAGCTTTTGTCTAAAACATTATTTTTTCTAAACACTACTTGCTGATT TTTATGCACAATAAAGGTAAGATGATTGCTCTGGTGAAATATCACTAAATAAGAATGTCA CGGATGGAATTTATACAGTGTTAAAAGCAATGCGTTTCTTTGTCTGCCGGCCATCAGTAA TATCCTCTGTACCGGCTCCTCGTTGCCAAAGTGAAGGTTAGATTAAACGAATCAAAAAAT ATCCGAACTGTACAATTTTTATATCAAACATATTTAACTGCAAAATACTGCAAACGTGCG CGAATACACTTAATCAGTAGTATGGCTAATGCATACTTTATTTCCTAAACTTTCTTATTA TCTATTTGAATATTTCTGGTTAAACCAAATGGACAAACGGATACCAGACACTCGAAAGGA TAACTGCAAGCTTCTGGTTTAGGATTGCAGTTACCAGGACAGTGGCTATTTTCTTTAAGC GATTTCCATAGAACAGGATTAAACCTGGTAACGTTGTAAACAGTAACGGGATAAAGTTTA TCGTTTATTAAGACCCCCTTATTAAAGGGGATGATAATGCTACCTGGAGGCATGTAAACA TCTGCTTGATACCATAAGGTCAATCTAAGATTTTTTAGGCTATGTATGCATGAGAACGAC ACTCCGGTAGAGGGACTTATAACTGTATCAACGACCTTCCATTCCATTACAGAAACCTTT TAAGTGAAATAGTCAATGGTGTAAATTACATTTTCCGCAAGCCTATTCAGGATAGATGAA AATCTGAGAAACATAACTCGTTGAAAACGATCGTTTTTTATTGACCACTCTATTTATATT GATTTTTTAATAAGTTATTTATTTTATGCTCTTATTTTGTTTACATTCTATTACATTTTT GTATTTTATACGTGGTGTAAATATTGGGCGGTAGTGGATGTTATAACGCTCAATTATTAA ACTGTAAGTGACTGTTGTATTTCTTATTTATAAATACCGCAACCTGTAAGCGCAGCGGTA CATTTTACCCGGCATTGACAGGGAGAAGATACGTATCAACCAGAGAGTACAAAACAGTGA AAGAATATATTCTTCAGGCAATAAATGATCGCTAACGTGTAAAAATAACCGACGAATCTA AAAAATGTGAGCGTGTGGCTGGTCTTTATTTAAACGATGATCTTCGCAATGGCGCATTAA TGGCTGACATTGGCGGTTCGTTGATCGGCTTGTGCGCGGTGAAAGGCTATATTTCTTCCG TTGCGGGAAGTATGTCAGAGGCATTCTGGTATTATACCGGGTGTATGTAAATCCGGGGTG GGCAGAAAGCCCACCCTCGGTTTATTGCCTTTATCGTGGATTAGGGATGCGAGATAAAGC GAGAAAGGCGTTGCAGCAGTAACCGGTTTTCTTCGCGCAGCCGTGAATTCTCTTCCAGCA GCGTTAACGCGACCGCGATCCCTGGCCAGTCGAGCGCCAGCTCCTCGCGTAAGCGTAGCG CGCGTTGTACCACGCTCGCTGCGCGATCGTCGAATTGCCAGTCGGCGTTATCGTCTTCGT AAGGCTCAATTACGCCAAGTCCGACGATTTCGTTTAGCTCCTCTTCCGTCACGCCGGTGT GCAAACAAAATTCGGTGATGGTAAAGGTGACAGTGATGTTAGCCATTATGCTTTCCCCCA TTGCTGGCGTGGGTCAAAGGACGACTGCGCGTCCGCCAGTTGTTGCCACAGGGCAGCTGT TTTCTCGTCAGGTTTCGGCGGCATAACGATTTTGATGATGGCATAGAGATCGCCAGTGTG CTTTTTACTGGCTAATCCTTTTCCTTTGATACGCAGCCGCTGACCTGCCTGGCTGCCGGG GGGAATGGTCAGCAAAATACGCTCTTTAAGCGTTGGCACAGACACCTTAGCGCCGAGCGC CGCCTCCCATGGGGCAAGCGGAAGGACGACTTCCAGATCCTGATTGACGATATCAAAGAG CGGATGCGGGGCAATATGGATAACGAGCCATAAATCGCCATTAGGTCCGCCGTTTTCCCC CGGCGTGCCCTGGCCTTTCAGTCTGATTCGTTGCCCGTTGCTGACGCCAGCCGGGATTTT CACATTCAATGTTTTGGGAATTTCCCGCTCCACCAGGCCGAACGCGTTATAAACGGGGAC GGAATAGCTAATCGTACGCTGGTGCTCTTCCAGCGTTTCTTCCAGGAATACCGCCACTTC AATTTCGATATCATGACCGCGTGCGGCGTGGCGGTGGTGCGAATGACGACCGTGCTGACC AAAAATAGACGAGAAAATATCATCAAAATCTTCGGCGTTATACGGCTGGCCTTCGTGTTG CTGGAACTGGCGATTAAATTGTGGATCGTTACGGTGTTGCCATAACTGGTCATACTCGGC GCGCCGTTGCTCATCACTCAGCACTTCCCATGCTTCAGCAACCTCTTTGAAACGGGCTTC GGCATCGGGTTCTTTGCTGACATCTGGATGGTACTTGCGGGCCAGTCGGCGATAGGCGGT CTTAATCGTCTTGAGATCGTCCGTCGGTTTCACGCCCATAATGGCGTAATAATCCTTAAG TTCCATAGCATCATCTCGCTAAATCAATACATACAGAAGGGACCCCAAAAAGGTTTCTCC ACTAAGTGTAGGGTAAACCTGAAAAGTGCGTATGAAAACACCAGTTATATCATTAGTAAG AATAAATTACGTTGTTCGACTATCAGAAGGTTGCGCAGCGCGCCGACATAACTTTACAGG GGAAAGGTTGCCAAAACCGCGCCAGTGGCTAAGATAACTCGCGTTAAACAGTGAGGGCGC AATGGCGAAACAACAACGGATGGGCTGGTGGTTTCTTTGCCTTGCATGTGTCGTGGTAAT GGTTTGTACCGCGCAACGCATGGCGGGCCTGCACGCCTTGCAGATGCAGGCGACGGCCTC TGCTGCGGTGGTCAGCGCTCCCTCCTCGACAGATGACGGCTCGCCGGTCACTCCCTGCGA ATTAAGCGCCAAGTCGCTGCTGGCGGCGCCTCCAGTACTCTTTGAAGGTGCTATCCTTGC GCTTTATCTACTGCTTTCCTTACTGGCGCCTGTCCGGGTCATGCGCCTGCCGTTTTCGCC TCCACGGGCTATTTCGCCGCCCACATTACGGGTACATCTACGATTTTGTGTCTTCCGTGA ATGACAGACCGGTTATTACTAACGGTTAATTACTCATTCACGGAGAAAAAATATGATGAT TTTATTCAGGCGGATACTGTTCTGCCTGTTATGGCTTTGGCTGCCCGTCTCCTGGGCGGC GGAAAGCGGCTGGCTGCGTTCGCCCGATAACGACCATGCCAGCATACGGCTACGTGCCGA TACGTCCGCTAACAGTGAGACCCGGCTGTTGCTGGATGTCAAACTGGAAAACGGCTGGAA AACCTACTGGCGCGCGCCGGGGGAAGGGGGCGTGGCACCCTCTATCGCCTGGAAAGGCGA CATGCCTGAGGTAAGCTGGTTCTGGCCAACCCCCTCGCGCTTTGATGTGGCGAATATCAC CACCCAGGGATATCACGACGAGGTGACCTTTCCGATGATCGTGCGCGGTACGCCGCCGGC GACCTTGCGCGGTGTGTTGACGTTATCAACCTGCAGCAATGTTTGTCTGTTGACCGATTA CCCCTTTTCCGTGACGCCCACTGTGCAGAATGCCGATTTTGCCCATGACTATGCGCGGGC GATGGGTAAAGTTCCGCTCCGCAGTGGGCTAACGGACTCGCTTGACGTTGGCTATCGCCC GGGAGAACTGGTGGTCACTGCTACGCGAGCGGCGGGCTGGTCATCGCCCGGGCTCTATCT TGACACCATAGATGACGTCGATTTTGCGAAGCCTCGCCTGCGCGTAGAGGGCGACAGGTT ACAGGCGACGGTGCCGGTGACGGACAGTTGGGGCGAAAAGGCGCCCGATTTGCGCGACAA ATCGCTGACCCTCGTGTTAGCCGATGGCGCTATCGCCCAGGAGAGCACGCAAACCATTGG CGCTGCGCCAGCGCAAACGCCGGACAATGCGGCGCTACCTTTCTGGCAAGTTGTAATGAT GGCGCTAATCGGCGGACTGATTCTTAATTTAATGCCCTGCGTACTGCCTGTTCTGGGCAT GAAACTTGGCTCTATTTTATTGGTAGAGGAAAAAAGCCGCTCTCACATCAGGCGACAATT TTTGGCTTCGGTCGCCGGTATCATTGCGTCATTTATGGCGCTGGCGGCGTTTATGACCCT CCTTCGCCTGTCAAACCATGCGCTGGCCTGGGGAGTCCAGTTCCAGAATGCATGGTTTAT TGGTTTTATGGCGCTGGTGATGTTGTTGTTTAGCGCCAGCCTGTTCGGGCTTTTTGAGTT CAGGCTTCCCTCATCTATGACCACGAAACTGGCCACTTACGGCGGTAACGGTATGTCGGG ACATTTCTGGCAGGGGGCGTTCGCCACGCTGCTGGCGACGCCTTGTAGCGCGCCGTTTCT GGGCACGGCGGTCGCGGTGGCGCTCACGGCGTCGCTGCCGACGCTGTGGGGGCTGTTCCT TGCGCTTGGCCTGGGAATGAGCGCGCCGTGGCTACTGGTCGCGATACGACCAGGGCTTGC GCTACGTTTACCGCGCCCCGGGCGTTGGATGAATGTCCTGCGCAGGATCCTCGGTCTGAT GATGCTGGGGTCGGCTATCTGGCTGGCGACGTTACTCCTGCCGCATTTCGGCTTCACTGC GTCAAAGAGCGCGCAAGACACGGTTCAGTGGCAACCGTTGAGTGAACAGGCAATCCAGTC GGCGCTGGCGCAGCATAAGCGGGTATTTGTCGATGTCACTGCGGACTGGTGTATTACCTG TAAAGTGAATAAATACAACGTCCTGCAAAAAGAGGATGTGCAGGCCGCCTTGCAACAGCC GGATGTTGTGGCGCTGCGGGGAGACTGGACGCTGCCGTCCGATGCCATTACAGATTTTCT GAAAACGCGCGGCCAGGTCGCCGTGCCGTTTAATCAGGTATATGGCCCCGGTTTGCCGGA AGGGGAGGCACTGCCCACTTTGCTGACCCGCGATGCGGTATTACAAACGTTGAAAAAAGC GAAAGGAATAACCCAATGAAATACATGATTGTTTTACTGCTGGCGCTGTTTTCGACGCTG AGCATCGCGCAAGAAACCGCTCCTTTTACGCCGGATCAGGAAAAGCAGATTAAAAATCTG ATCCATGCGGCGTTGTTTAACGATCCTGCCAGCCCGCGGATAGGCGCTAAACACCCTAAG CTGACGCTGGTGAACTTTACGGATTACAACTGCCCGTACTGCAAACAGCTCGATCCGATG CTGGAAAAGATTGTGCAGAAATATCCTGACGTTGCGGTCATTATTAAACCGCTGCCATTC AAAGGAGAGAGTTCCATACTGGCGGCGCGTATTGCGCTGACCACCTGGCGCGATCATCCG CAACAGTTCCTCGCGCTACATGAAAAACTTATGCAAAAGCGCGGTTACCATACGGATGAC AGTATTAAACAGGCCCAGCAGAAAGCAGGGGCGACGCCAGTGACGCTGGATGAAAAAAGC ATGGAAACGATACGCACTAATTTGCAGTTGGCAAGACTGGTCGACGTGCAAGGAACGCCA GCGACGATCATTGGCGACGAGCTGATTCCGGGCGCAGTGCCCTGGGATACGCTGGAAGCG GTGGTGAAAGAAAAACTGGCGGCTGCCAATGGCGGGTAAACTGCGGCGTTGGCTGCGTGA AGCCGCGGTTTTTCTGGCGCTCCTCATCGCGATAATGGTGGTCATGGACGTCTGGCGCGC GCCGCAGGCGCCTCCGGCGTTTGCCGCGACACCATTACATACGCTGACGGGAGAGTCGAC AACTCTGGCGACCTTGAGCGAGGAACGCCCCGTACTGCTCTATTTTTGGGCCAGCTGGTG CGGGGTATGCCGCTTTACCACGCCTGCGGTCGCTCACCTGGCGGCGGAAGGGGAAAACGT CATGACCGTTGCGCTCCGCTCCGGCGGTGATGCTGAGGTTGCCCGCTGGCTGGCGCGCAA GGGCGTTGACTTCCCGGTCGTCAATGATGCTAACGGCGCCTTATCCGCTGGCTGGGAAAT CAGCGTGACGCCAACGCTGGTGGTGGTTTCACAAGGTCGGGTTGTGTTCACCACCAGCGG CTGGACCAGCTATTGGGGCATGAAGCTTCGGCTGTGGTGGGCAAAAACGTTCTGAATATG CGCCGGGGTTTCCCGGCGCTAACGCGTTTACTGTAAGAAAAACCTCCGTTTTGCGAAATC GTTCCCGGAAAAATGATCCATTTCTGTCACACTCAGAACGATTTGATAACAACAAGAGGT CATAGGGATGAAAAAATCATTACTCGCTGTTGCTGTGGCAGGGGCTGTTTTGTTGTCATC CGCCGTACAGGCGCAGACAACGCCGGAAGGTTATCAATTACAACAGGTGCTGATGATGAG CCGCCATAATCTGCGGGCGCCGCTGGCGAATAATGGCAACGTACTGGCGCAGTCGACGCC GAACGCCTGGCCGGCGTGGGACGTTCCCGGCGGGCAACTGACGACGAAAGGCGGCGTGCT GGAAGTCTATATGGGACACTACACACGTGAATGGCTGGTCGCGCAGGGGCTGATACCGTC GGGAGAATGTCCGGCGCCCGACACGGTATATGCCTATGCGAATAGTTTGCAGCGCACCGT CGCCACCGCGCAATTTTTCATTACCAGCGCTTTCCCCGGCTGTGATATTCCTGTTCATCA TCAGGAAAAAATGGGCACTATGGACCCTACCTTCAATCCGGTGATTACCGATGATTCCGC CGCGTTCCGGCAACAGGCCGTACAGGCGATGGAAAAGGCGCGTAGTCAGCTACATCTTGA TGAGAGTTATAAACTGCTTGAGCAGATAACGCATTATCAGGACTCGCCGTCCTGCAAAGA GAAGCATCAGTGTTCGCTAATCGACGCGAAAGATACCTTCAGCGCGAACTATCAGCAAGA GCCTGGCGTGCAGGGGCCGCTGAAAGTAGGGAACTCGCTGGTGGATGCGTTTACCCTGCA ATATTACGAAGGCTTTCCGATGGATCAGGTCGCTTGGGGCGGGATCCACACCGATCGGCA GTGGAAGGTGCTGTCAAAACTGAAAAACGGCTACCAGGACAGCCTGTTTACCTCACCCAC GGTGGCGCGCAATGTCGCTGCGCCGCTGGTAAAATATATCGATAAGGTGCTGGTTGCCGA GCGCGTTAGCGCGCCGAAGGTTACCGTGCTGGTGGGGCATGATTCCAATATCGCGTCGCT GCTGACGGCGCTGGATTTTAAACCCTATCAGCTCCATGACCAGTATGAGAGAACGCCGAT TGGTGGTCAGCTTGTCTTCCAACGCTGGCATGACGGTAACGCTAACCGGGATTTGATGAA AATCGAGTATGTCTACCAGAGCGCCCGGCAGTTACGTAATGCGGAAGCGTTAACGCTCAA ATCGCCTGCGCAAAGGGTAACGCTGGAACTGAAAGGATGTCCGGTGGATGCGAACGGCTT CTGTCCGCTGGATAAGTTCGATAACGTCATGAACACTGCTGCAAAATAGCCGTATGCCCC CGCGCAGGCGGGGGCGTTTGTGTTATACGTTCTTACGTTCGATGACTTGTTCGCCCCAGA AGAGCGAGTCTTTGTCCGTTTTCTCAAAGGCTTTGATCAGCACCTCATCGCTACCTTCTT CCCATATTTTTTCTGCCAGTTTCTCGTCATAGTGAGCGACTTCAAAAATGGCTTCGGCAA TTTCCGGCGACGTATTACGCAGGCTTGCCCATTCGCCGACGCGGTGCGCTTTTGCTTCTT GAGTTGGCATTCGAATCCTCCTGTTGAAGATTAGCCGTTGAGTTTGACTGCCAGACCGGC GACGTATTCCCCCTGATAGCGAGCGATAGAGAGTTCCTCCTGGCTTGGTTGACGTGAACC GTCGCCTCCAGCGATAGTCGTTGCGCCGTAAGGCGTACCGCCGCGAACCTGGGAGACGTC AAACAGTTCCTGTGCGGAATAGCCTATCGGGACAATCACCATCCCATGATGGGCAAGCGT AGTCCAGGTCGAGGTGATGGTCTGCTCCTGGCCGCCGCCCGTTCCGGTAGAACTGAACAC GCCGCCGAGCTTGCCGTATAGCGCGCCGGATGCCCACAGTCCGCCGGTTTGGTCCAGGAA GGTACGCATCTGGCCTGACATATTGCCAAACCGGGTTGGCGTACCAAAAATAATGGCATC GTAATCCGCCAGCTCCTGTGGGGTGGCAACCGGTGCGTTTTGCGTTTTACCGCCAGCTTT TGCGAAGATTTCAGGCGGCATTGTTTCTGGCACACGCTTTATAATGACCTCTGCGCCGTC GACTTTCTTTGCCCCTTCCGCCACCGCGTGCGCCATGGTTTCAATGTGTCCGTACATGGA ATAATAGAGCACCAGAATCTTTGCCATTTGTACTACTCCTCAGATTAATCAGGTGTGTAG CGATTCGCTACGTCTATTTAAAGATATGCCCTCCTGTGAAGAGTGCAAATTTCAGCGCCA TTTCTTTGATTTATAACAATAATTAATTTGGCGACCTTTGTTGCAAAATGATACATTTTT AAGCGCTTTGATTTTTCCAAGTATAAGAATAACTTATTTATTTCTCATGGTTATTATTCT GCATATTCGGCTTCTGATGTTGCAGAATATTTCGGTAAGCGGCCTACCACGGCGTTTTTC ACTATGCTTAATTTTACGCGGCGTTACTGATGATATCGTTCATACGCGGCGCGAGGAGAT ACTCCTCATTACCTATGCAATATGATGTCTAATCTATGACGGAGGTCAGTAATGGCAAAC CATCGTGGCGGTTCCGGTAATTTTGCGGAAGACCGCGAAAGAGCATCAGAAGCAGGTCGT AAAAGTGGTCAGCACAGCGGGGGCAATTTTAAGAATGACCCGCAGCGTGCATCCGAAGCA GGCAAAAAAGGGGGCAAAAGCAGTAACCGTAATCGCTAGCCTGCGTCACAACAGCAAGAC GCTGAGCGTTTCGCGCTAAAAAGCGTCATGCGCCACCGCCGCCGGATTTCCGGCGGTTTT TTTGTTTATAAGCCGGATTTGGTATGCTTGCGTCCTGACGAAAAGGAGAGGGCGCATGTC GCAACGCACAGAGAAAAAAATCGGGAAACGTTCGCAGGCCACCGGTGCAAAACGGCAGCT TATCTTAACCGCCGCGCTTGCCGTTTTTTCCCAGTATGGCATTCATGGCGCGCGTCTTGA ACAGGTCGCCGAGCGGGCAGGCGTCTCCAAAACCAATCTGCTTTATTATTATCCCTCGAA AGAGGCGCTGTATGTCGCGGTAATGCGACAGATTCTGGATGTCTGGTTGGCGCCGCTCAA GGCGTTTCGCGCAGAATTTTCCCCTCTGGAGGCCATCAAAGAGTATATCCGTCTCAAGCT GGAGGTTTCGCGTGATTATCCGCAGGCGTCGCGGCTCTTCTGCATGGAGATGCTGGCGGG CGCGCCGCTCTTAATGGATGAACTGACCGGCGATCTAAAAGCGTTGATAGATGAAAAATC CGCGCTGATTGCCGGATGGGTGCACAGCGGGAAACTCGCGCCCGTTTCTCCGCATCATTT GATCTTCATGATTTGGGCCGCCACGCAACATTACGCCGATTTCGCCCCTCAGGTTGAAGC GGTAACCGGCGCGACGCTTCGCGATGAAGCCTTTTTCAACCAAACGGTCGAAAGCGTTCA GCGCATTATTATTGAAGGGATTCGCGTGCGTTAACCGGCTGGCGGCAGTGGGCAGCTCAA ATCACCCTCTTCACATTGCAGCAGCGAGGCTAAAAACGCTTCGCGTTCGTTCGTTTTATC GGTCAGGCACTGGCTGGCGATCATGGGTTGAACGCTGCCGCCCTCCGTACCTGAGCGAAT CAGCGCGCAATCGGCGTCGCGCAGGGCAATCCATGCCACCTGCGCTTTTTGCAATAGCTC ACGCTGCGGCGGTTGCGCACGCTTAATCGCGCTTTGATAGGTTTCGTTCAGCTTTTTATC TGCCGCCTGGTATTGCGCGGCGGCGCAGCGATTCATTTCCAGCTGCGTACTGGCGCTGGC ACACTCATCGGCCAACGCCTGACTGCTGAACAACAACGCCGCGCAGGTAAGGAAAATTCG TTTCATACGGTCCTCTGACGCGAGTAAAAAGGCTCCATTGACGGAGCCTTAATTAACCAC AGTATTAGCCAATTGTCATCAGGCTGGCATTACCGCCAGCGGCGGCAGTGTTTACGCTCA GCGAACGTTCAATATAGAGCCGTTCCAGCAGCATATTGCTTTCGCCGCGGGCGAACCCCT GTACCGACACTATCGCGCCTTCGCGGGCGGCGACGGCTTCGCACACGGTTCGCAGCTTGT CGGAGTCGCCGTGGAAAATCACCGCGTCAAACGGCTGCGCCATCAGCGTTTCCGCTTTCG CAAACTGGACACGCGCCGCGACGGCGGCGGGGAGACGTTTCGCCAGATCGCGGTGGAAGG CGTCGTCTGACCATAGCGCCTGACTGCCGACGGCGAGAACGGCGGCAAGCTGCGTCAACG CGTCCTGTTCATCATCAGCCAGGCATAACACCCGTTCACGCGGCAACAGCGTCCAGGTAT TACGCTCGCCGGTCGGCCCCGGTAGCAGGCGCTGCGTGCCGGCCTGCGCCAGATCGGCGA ATTGTCGGCAGAGCGTCTGTAGCGCCGGGCGATCCGCCGCCCATTGCGTCAGAGCGGTCA ACGGCGCGAGTAGCGTGGTTTTAAGCTGCGCATCCACCGGGTAACGCGCATCCTGACGAG TCAGCGTCGTATTGAGCGCATTGGGCGGGCGGTGTGCCAGCAGGCGGTAGAGATAGAGCG GCCCTCCCGCTTTTGGCCCGGTGCCGGACAGGCCTTCGCCGCCAAACGGCTGGACGCCGA CGACCGCGCCCACCATATTACGGTTAACGTACAGGTTGCCGACATGGGCGGAACCGGTGA CTTGCGCAATGGTTTCATCAATACGGGTATGTACGCCCAGCGTTAGCCCGTAGCCGGAAG CGTTAATCTGTTCGATAAGCTCCGCCAGTTGGTTACGGTTATAACGCACGACGTGCAGCA CGGGCCCGAAGACCTCTTTTTCCAGTTCTGCGAAGTTTTCCAGCTCAATAAGCGTGGGCA TAACAAACGTACCGGTCTGCCATTCCTGCGCGTCATCGCTGTTTTCACGCGCGGCCTGGA AAACCGGGCGGCCTTTGGCGCGCATCGTCTGGATATGACGTTCAATGTTGGCTTTGGCCT CGCTATCGATCACCGGCCCGATATCGGTCGTCAGACGGCCTGGATTCCCCATCCGACACT CCGCCATCGCGCCGCGTAACATTTTCAGCGTATGTTCGGCGATATCGTCCTGCAAACACA GCACGCGGAGCGCGGAACAGCGTTGTCCGGCGCTGTCGAAGGCGGAAGCCAGCACATCCA CGACCACCTGCTCGGTGAGCGCGGAAGAGTCGACAATCATAGCGTTCATACCGCCGGTTT CCGCAATCAACGGAATAGGGCGCCCCTGGGCGTCAAGACGCGTGGCGATGTTGCGCTGCA ACAACGTCGCGACCTCCGTGGAACCGGTAAACATCACGCCGCGTACACGCGCATCGGCGG TAAGCTGGGCGCCGACGGTTTCTCCCCGTCCCGGCAACAGTTGCACGACGCCCGGCGGTA CGCCCGCTTCCAGCAAAATGGCAATGCCCTGGGCGGCAATCAGCGATGTCTGCTCTGCCG GTTTCGCCAGAACGCTGTTACCTGCCGCCAGCGCGGCGGCGATTTGGCCAGTGAAAATGG CCAGCGGAAAGTTCCACGGACTGATACAGACCACCGGCCCTAACGGGCGATGCGTTTCGT TATCGAAATCGTCACGCACTTGACCGGCATAATAATGGAGGAAGTCTACCGCTTCGCGCA CTTCGGCAATGGCGTTGCTGAACGTTTTCCCCGCTTCACGCACCAACAGGCCAATCAACT GCTGCATTTGGTCTTCCATCAATACCGCCGCCCGCTGCAAAATAGCGGCGCGTTCTTGCG GCGGCGTCGCAAACCAAACCGGCGCCTGATTGACCGCGTTTTGCAACGCCTGTTCAACCT CGCTTTCTGTCGCTTCGCGTCCCCAGCCAACAATATCTTTCGGTTCCGCCGGGTTGATAA CCGGCGTCATCTCACCGTCGGCCACCGGTTGTTCCAGCACAGGTTTGGCCTGCCATTTCT GCATGGCGTTGCTTAACAGGGCAGAAGAAAGCGAGGCGAGGCGATGTTCATTCGCTAAAT CAAGTCCGGCGGAGTTTATCCGACCTTCGCCGTACAGATCGCGCGGCAGCGGAATTTTTG GATGCGGTATGCCAGCCTGACCTTCCTGCTGCGCCAGTTTTTCCACGGCCTCGACCGGGT CGGCCACCAGTTCATCGAGCGGTAGGGTGGCATCGGCGATGCGGTTGACAAAAGAGGTGT TGGCGCCGTTTTCCAGCAGGCGTCGTACCAGATAGGCCAGCAGGGTTTCGTGTGTTCCCA CCGGCGCGTAAATACGGCAGGGACGGTTAAGTTTTCCGTCCCCCACTTTACCGGTGACCT GTTCATACAGCGGTTCTCCCATGCCGTGCAGGCACTGGAATTCGTACTGACCCGGATAGT AATTTTGCCCGGCCAGATGATAAATCGCCGCCAGTGTGTGAGCGTTATGGGTCGCGAACT GCGGGTAGATCAGATTAGGGACGGCGAGCAGTTTTTTCGCGCAGGCCAGATAAGAGACAT CGGTATACACTTTGCGGGTATAAACTGGATAGCCCTCCAGCCCTTCCATTTGCGCGCGTT TGATCTCGCTATCCCAGTAGGCGCCTTTCACCAGACGAATCATCAGCCGACGGCGGCTAC GGGAGGCCAGATCGACTAAATAATCAATGACCAGCGGGCAGCGTTTCTGGTAAGCCTGAA TCACAAAGCCAATGCCGTTCCAGCCCGCCAGTTCGGGTTCGAAGCAGAGTTTTTCCAGCA GATCAAGCGAGATCTCCAGACGATCCGCCTCTTCGGCGTCGATATTGAGACCGATATCAT ACTGGCGCGCCAGCAGCGTCAGGGATTTCAGGCGCGGATAAAGCTCCTCCATTACCCGAT CGTATTGCGCGCGACTATAGCGTGGATGCAGGGCGGACAGCTTAATCGAGATGCCTGGCC CTTCGTAAATACCGCGACCGTTAGACGCTTTGCCGATGGCATGAATCGCTTGCTGGTAAG AGACCATATAGGCCTGCGCATCGGCGGCGGTTAACGCGGCTTCGCCCAGCATATCGTAAG AATAGCGGAACCCTTTCTCTTCCAGTTTTCGGGCATTCGCCAGCGCCTGAGCAATGGTTT CGCCAGTCACGAACTGCTCGCCCATTAAACGCATCGCCATGTCGACGCCTTTGCGGATTA ACGGTTCGCCGCTCTTGCCGATAATGCGGTTCAGCGAGCGCGAAAGATTGGCTTCGTTAT GCGTTGAGACCAGTCGGCCGGTAAAGAGCAGCCCCCAGGTGGCGGCGTTTACAAACAGCG ACGGGCTACGGCCAATATGCGACTGCCAGTTGCCATTACTGATTTTGTCGCGAATTAACG CATCGCGCGTAGCTTTGTCGGGAATACGCAGCAGCGCTTCCGCCAGACACATCAGCGCTA CGCCTTCTTGCGAAGAGAGGGAAAACTCCTGCAACAGGCCTTGCACCATACCCGCGCGAC CGCTGGCGGATTTTTGATTGCGCAATTTCTCCGCCAGTTGATACGCCAGTTTATGCGCCT GCTCAGCGACAGGCGGCGACAGGCGCGCCTGTTCCATTAGCATTGACACCGCATCGGTTT CCGGGCGGCGCCAGGCGGCGGTGATGGCGGCGCGAGAGACGGATTGGGGAAGAATCTGTT CGGCAAACTCCAGAAAGGGCTGATGCGGCTCATCCTGCGGCGCGACCGGCTCCTCGCTTT CATTTGCCGCGCCGGCAAACAGCGCAGGTAGCTCCGGTAGCGTATCGCTATTTTCCAGCT TGTCCAGATAGCTAAAGATTGCCTGTTTTATTAACCAGTGCGGCGTGCGATCGATACGCG ACGCGGCCATTTTGATCCGTTCGCGCGTGGCGTCGTCCAGCTTAACCCCCATCGTGGTGG TTCCCATACCCTCTACTCCTGTTATTCGCTCTATCTGCTAACCAATAGTTAGCGGAAAAT ATCCACTATATTGCAACTTTGTGCAACCGCGTTAAATGTGACCTGCGTTGCAAGCTTAAA AATGAATAAATTGTTAAAAAAAGAAAGTGGGAGTCTGACGGGGAAAACCATCTGGATTTA TTTTCTCTGCGGTAGTTAACACTTTTAAAAGGTGCAACCGCAAAAAATGTGAGAGAGTGC AACCTGGAGAAAAATAGTATCCCTCTGCAATCAAATTTGATGTAAATGGTGTGTTAAATC GATTGTGAATAACCACCGATTCCGGCAGGATACGGTCGCCCTGGTAAACATAACACCCTT GCCACGTTCCGGCAGGGTACAAAACGGCACGCTACGGTAGTGCCAATAAATAAATTTGGA GAACCTTGATGGCTATTAGCACACCGATGTTGGTGACATTCTGTGTCTATATTTTTGGCA TGATATTGATTGGGTTTATCGCCTGGCGCTCAACCAAAAACTTTGATGACTATATTCTTG GCGGTCGCAGCCTGGGGCCGTTTGTTACGGCTTTATCAGCCGGCGCGTCGGATATGAGCG GCTGGCTGTTAATGGGGCTGCCTGGCGCTATCTTTCTGTCGGGGATCTCTGAAAGCTGGA TCGCCATTGGCCTGACGTTAGGCGCATGGATTAACTGGAAGCTGGTGGCCGGGCGCCTGC GCGTGCATACCGAATTTAACAATAACGCGCTCACGCTGCCGGACTATTTTACCGGTCGGT TTGAGGATAAGAGCCGAGTCCTGCGTATTATTTCCGCGCTGGTCATTCTGCTGTTTTTCA CTATCTATTGCGCATCAGGTATTGTCGCTGGGGCACGACTGTTCGAAAGCACCTTCGGTA TGAGCTATGAAACCGCACTGTGGGCGGGGGCCGCGGCAACCATTATTTATACCTTTATCG GCGGGTTTCTTGCCGTTAGCTGGACGGATACCGTTCAGGCCAGCCTGATGATTTTTGCGT TAATCCTGACGCCGGTGATGGTTATTGTCGGCGTAGGCGGTTTTAGCGAGTCGCTGGAAG TGATCAAGCAAAAGAGCATCGAGAATGTCGACATGCTCAAGGGGCTGAATTTTGTCGCTA TTATTTCTCTGATGGGCTGGGGGCTGGGTTACTTCGGTCAGCCGCATATCCTGGCGCGCT TTATGGCGGCGGATTCCCATCACAGTATTGTTCATGCGCGTCGTATCAGTATGACCTGGA TGATTCTGTGTCTGGCGGGCGCGGTGGCGGTGGGCTTCTTTGGCATTGCGTACTTTAACA ATAACCCCGCGCTGGCCGGGGCGGTGAACCAAAACTCAGAACGCGTATTTATTGAACTGG CGCAGATCCTGTTTAACCCGTGGATTGCCGGTGTTCTGCTGTCTGCTATCCTGGCGGCGG TGATGTCGACGTTGAGCTGTCAGTTGCTGGTATGCTCCAGCGCGATTACGGAAGATTTAT ATAAGGCTTTTCTGCGTAAAAGCGCCAGCCAGCAAGAGCTGGTATGGGTAGGGCGAGTGA TGGTGCTGGTGGTAGCGCTGATCGCCATTGCGCTGGCGGCGAATCCTGATAACCGTGTGC TGGGGCTGGTGAGCTACGCCTGGGCTGGATTCGGCGCGGCATTTGGACCTGTTGTCCTGT TTTCTGTGATGTGGTCGCGTATGACACGTAACGGCGCGCTGGCGGGAATGATTATTGGCG CGGTGACGGTTATCGTCTGGAAACAATATGGCTGGCTGGATCTGTATGAGATTATCCCTG GCTTCATTTTCGGCAGCCTGGGGATCGTAATCTTTAGCCTGCTTGGCAAAGCGCCGACAG CAACGATGCAGGAACGCTTTGCAAAAGCGGACGCGCATTATCATTCCGCGCCGCCGTCGA AGCTACAGGCGGAATAACCGACATGTCCGATAGCATTATTGCCATCGGATATATTTTACC AGGCGGCGTTATACGCCTGCCTGGTCCTCTGATAAGTCCCGGACCGATTGACTGAAGGTG TTCAGGTAAATGAGGACGCTCTCTCAAACTATTTTTAGCCCTTGAGCGCCGTTAACGCGG CCGTAATACGTCTCGAGTAATCACTAACTGACCATATATGAAATCGCCTGTTAATGGTAC CAATAGCCTTGACGCAATAGAGTAATGACAAAAATTAAAACGAGTCAGCGTTACTGGCGT AAGTATGCCGCACAAAATTTTGCATAAATAATGCCGTTTTAGCGATGGGAGAGAGGACAC GTTAATTACTCCGTTTTAATCTTTTATATGTTGAATATTCAATGGGTTATGGGTGTTTTC ACCATTAATACCCATAGTAGCTAATGATTATCTTTTTTAGTCTCCTGCCAATGAAATAAT TGTGTAATCTTTCTGTAAGAGACTGACAATGACGCAATAATGTTTGGTTAATGTTTGGTG AATATATTGTTGCATTATTGATGTTTTGTGTTGTACTTAGTAGTAATAGCGGTAGTTCCC CGGCAGTGATGGTCACTCACTATGGAGATCGCGAATGGTAATGTCCGCACCAGGACACAT TGTTTACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGTGGTGGTCTTGTCAT CTTAAAAGCTCTCATCATTTCCCTTACTGTCCATACCCATGACGCCATATGTGGTGCGCG TAGCCGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAGGAAGCCAACCCTCA GATGTGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTATACCTACAACTCAAG GTGCTATCCATGGGAAGACAAAAAGCAGTGATCAAAGCTCGTCGTGAAGCAAAGCGTGTG TTGAGACGAGATTCGCGTAGTCATAAGCAACGTGAAGAAGAATCGGTCACGTCACTGGTA CAGATGGGCGGAGTAGAAGCCATTGGCATGGCGCGCGATAGTCGCGATACCTCTCCTGTT AAGGCGCGAAATGAAGCACAGGCGCATTATCTGAACGCTATCGACAGTAAACAGCTTATT TTTGCGACCGGCGAAGCCGGCTGCGGAAAAACATGGATCAGTGCGGCAAAGGCGGCAGAA GCATTGATTCATAAGGACGTCGAGAGGATCATTGTGACGCGTCCGGTATTGCAGGCTGAT GAAGATCTTGGTTTTTTGCCCGGTGATATCGCTGAAAAATTCGCGCCTTATTTTCGTCCC GTCTACGATGTCCTGCTTAAACGGTTGGGCGCGTCCTTTATGCAATATTGTTTGCGCCCG GAAATCGGTAAGGTAGAAATTGCCCCGTTCGCCTATATGCGTGGGCGTACTTTTGAAAAT GCGGTCGTGATCCTCGACGAGGCGCAAAATGTGACTGCGGCGCAAATGAAAATGTTTTTG ACGCGATTAGGCGAAAATGTCACGGTCATTGTCAATGGCGATATTACGCAATGCGACCTG CCGCGCGGTGTGCGTTCCGGGTTGAGTGATGCGTTGGAACGCTTTGAAGAAGATGAAATG GTGGGGATTGTGCATTTCAACAAAGACGACTGCGTGCGCTCGGCGCTTTGTCAGCGAACG CTCCACGCATACAGCTAATATAGCATTGACTTTCAGAGCCCGGGAGACCGGGCTTTGTTG TCTATAAAGCGTCCAGCAGACTCATGGACAAAAAAGGAAAATGACGCCTGTACGTGAAGG GAATTATTTTGTCATGTCCAGGGCATTCATTGTCCGTAATTTGCTTTCTCGGGCCTGTTC CGGCGAGGACTGTACAAGAAGGGTATAGAGCAGGTCAAAGACGAAAAGCTGCGCGGCTTT CGTACCGATCGAGTCACCCTGCAACATTCCTTGCCGATTACCATTGATCAGGCAAAAATC GGCCTCTTCACATAATGGAGAACCCAGATTATGGGTAATGGCGACTGTGGTGGCGCCAGC CTGTCGGGCCAATCGGAGTGAATGCACTGTTTCTGGCGATGTGCCCGAGTGACTGACACC CATCGCGACATCGCCTGCTTTCAATAGCGTAGCCTGCATGTACATAAAATGGTTATTGCT TACCGCATCGCCCCGTAAACCCATACGCATTAGCTTGTGTTTCATATCCAGCGCCGTGAT CCCCGATGAGCCCACACCAAACATATAAACTGAGTGACAGTGACGTAGGGCGTCCACGAC ACCGAGAACCTGTTGCATATCCAGCAGATTTAGCGTTTCAGATAATACATTACTAATGGT GTTCTGCAATTTTAAACCAATCGCGTGGGCATCGTCGGATTCGCTAACTTCGGCATCCAG TAGAGGACTACTGTCATCAGACTCGGTAGTGGCAAGTTCAATGGCCAGGTCCATTTTAAA ATCCTGAAAACCTTTATAGCCCAGGGTGCGACAAAAGCGAATAACCGTGGCTTCTCCGGC CTGTGTGTCGCGCGACAAATCCGCAATAGATGACTGTGTCACCTGTCTGGGGAAGGCTAA AATATATTGCGCAATACGCTGCGAGGCACGTGTCAGGCTTTTTTGCATAGCACCCAGAGT GTCAAGGATTTTTCCGGGTTTCAGACGTGGGGGTTGAGGCTCCATATAGTTCCTGCTCTT GAGGGCTGATTGCGGCACAAACCCTGCAATATCGAACAGAGCAGAGCCTATCAAGTCTGC GGCATGAAAAAAAGCGCGATGCAAGTAAAGGAGGGGGAATATTTACATCGCGTTGCCAAC TTATGACAGAACATCACTGGACAGTAATCTGTTTGCTCTTACGGTGTTTATAGCGCGCCA TCTGTCGGATGGTTTATATCTCGCCCGGTATTGTCGCCCCGCGCGTTGGCGTCACCGTGT GCTGTGTCGGTATAGCGTGGTCTCATGAAATCATAATGTCACCTTTGGTTCAGGTTTTTC ATCCAGCGTCAATGGCGGTGCCGGGGCAAATAACGGGGCGAAAATAACGCCGCTGATCAC CACGCTTAGCGAGCCAATGACCCCATAAAAGAAGAAGTTAAGGTCAGTGGCATAGCGTGT GCCCAGCACGGTAATGACGCTCATAATAATTCCTAAAACCGCACTCCCGGCATTTGCTCG TTTAAAGAAAATGCCCAGCATCAACAGACCGGTCATTGGCCCTCCCATCAGACCTATCAG ACTATTAAATGCATCCCAGATCTCTGATTCATCGGCCATGACCAGCCATACCGAGGCCGC GCTACTTATCAGGCCCGCGACCAGAATAACTAACTTAGCTATTTTCATACGGTTTTCTGG CGTTCCTTTTTTATGACTCAACCGCTGATAGATATCGGAATTAAAACAACTGGAAATGCT GTTTAAGCTGCTGGAGATGCTCGACTGCGCGGCAGCGAAAATAGCGGAGATTATCAACCC TGCAATGCCGACTGGCATTTCCGTGACCACGAATAAGGGCAAAATGCCGCCAGTGTTGAA TCCCGCCGGTAATAATTGTGGCTGTTGCTGATAGTAGACAAATAATGCCGAGCCGATAGC AAAAAAGAAAACAGGGATCACCGCAACCAGTTTGGCATTTGTAAGTAATGTTTTCTTCGT TTCCTCTATGGAGTCAGTCACCATATAGCGTTGGACCACATCCTGACTGGCAGTAAATTG CTGAATATTGGCAAACAGAAACCCAATCATCAATACAGGTACTGTGCTTTCCGTCCAGCT CCAGTGGAACTGCGTAGCCGGCAAGAATTTATCCGCCTGCTGCGTCACCGTAAAAATTTC ACCAATGCCGCCCTGGACTTTCAGACATATCACTATAAAAATCAGTATCGCGCTGCCAGA AAGTAAGAGACCTTGAATAACCTCAGTCCATATTACTCCTTCAATTCCCCCCCATCCAGG TATAAATGATACACATCACACCAATCAACAGTACCAAAATCACCGGGTCTATAGCGATGA AGGGGCGCAAGGCCAGCACGGCGAGGAAAGTGATAATGGCGATACGTCCAATATGAAACA ACATAAATGACATGCTGGCGACCAGACGGCAGCGCACATCGAACCGTGCTTCGAGATATT CATAGGCTGATGTGACTTTCACTTTCCGAAAAAACGGAATATAGAAATAAAAAACCAGCG GTAAAATTGCGATAGCCAGATCCTGACCAATGATAAACGTCCAGTCGGAAGTAAACGCTT TGGCAGGAATTGACATAAATGCAATTGAGCTTAACGTAGTAGCAAATACACTGACCCCAG CCGCCCAACCAGGAACCCGGCCACCACCGCGAAAATAATCGTCTGCTGTTTTTTGCCGTC TGGAAAAATAGACACCGACTACCATCATGGCCAGGAGGTAGCCAAATAATACAAAATAAT TAACGATGCCGAAAGAATGTGCAATCATAGTTCTTTCCTGCTTATGGTTTTGAGTAGCGT TGCGGTCATCGTCTGTGTATTTTTATCTTCCCATCATTCAGACGATACGATATTCAGATC AAGCAATAGTTTTTGTTAATCTCAATGACGCTAATCATGAGATGTAAAAGGCAGAGCATT TATGCTCCACCAATGGTGATGCCCAGACGTATGTCCTGCCGGATACCTGAAATAGCAGCT ATCCGATATTGCGTTCAAACAGGCTTCAGGCCTGGGTATCGTATTTGCCGATAGCATTCT TAACGTCGGATTATTCTCTGAGACATAAATATCAATAGTAAGCGTGTTCATTTTCTTTTC CTGTTCAGCGTTTTACTGCGTGACTGAACCACTGACAGATATGCTCGATACGGGTGATAG CGGAACCAACGGTAACTGCCCAGGCACCATGCTCAATAGCATTGGCCGCCAGTGCAGGCG TGTTATAGCGCCCCTCGGCAATAACACGACAACCTGCATGACTCAGTTGTGTCACCATTG CCAAATCTGGCTCAACCGGCGTGATGGGACCGGTATAGCCAGACAGTGTTGTACCAATGA ATTCGATTCCTTTCTGATGGCAACTTATGCCTTCATTCACGGTTGAACAGTCTGCCATCG CCAGTAATCCATGCAGGCGAATACGTGTCAGTAAACTATCAATATCAACCGGGCGAGAGC GGAATGAGGCATCAAAAGCGATAATATCGGCACCTGCCTGCGCCAGGGCGTCAACATCCT GTAAATATGGAGTGATACGGACTGGCGACCCTGTAAGGTCACGTTTAATTATCCCAATAA TAGGAACAGAAAGATGGGGACGAACAGTCCGCAGATTCTCAATGCCTTCAATGCGCACAG CGACCGCACCCGCCGAAGCCGCTGCCTGTGCCATTGCAGCCACAATTTCAGGTTTATCCA TAGGGCTGCCTGGTACCGGTTGGCATGAGACAATCAGCCCACCGTTTTCGTGTACACTTT GTTCCAGCCTGGCTAATAGTGACATCCAGTTCCGCCTTATATATTTTGAAGTTTTACTCC GTTTTATATTATGTTGTGGAGTGTTGCTGCATCAAGCAAAAAGATAGAAAAATGTGAACA CAGTCATAAGGTATGTTTGTCATTCAATTACTGCGCCAGCGGATTTGAGGCTATAACCTG AAGCTACAAGACAAATACAATTCATTCTGACGGCAGCATGCTGTATTTTATTAACTGCTT CCGGCATAAAGATAAAATGCTCAGAAGGAGCTTATACGCCACGGGATAGCCAGTATGAAA TGCATCACATAATTCTTGTTGTATTTATTCAGAATGCAATCACTAATGAGTTTGCCCATA ACAGGTCACCCATAATCACTTCTAACATCACCATAGTGTGCTTTTACCTCGCACATGGTA ACCCCATGTAATTATTTTTAGCGCTTGGTCACATTTTGTCATTTTCATTGTTGAAATTAT GCACCATAAGATCACTAATGATGAAGCTTTACTCCAGTTGTATTTCTTCGCATGGGGATG CAGATGAAAAATTTTAAGAAAATGATGACGCTAATGGCGCTATGTTTATCAGTTGCTATC ACCACATCAGGATATGCAACCACGCTTCCTGATATACCAGAACCACTGAAAAATGGTACT GGCGCTATTGATAATAATGGCGTGATTTATGTCGGCTTAGGTACCGCAGGGACATCCTGG TATAAAATTGATCTTAAAAAGCAACATAAAGACTGGGAGCGTATAAAGTCGTTTCCTGGT GGAGCTCGTGAGCAATCCGTGTCGGTATTTTTAAATGATAAGCTGTATGTTTTTGGTGGC GTAGGGAAAAAAAACAGTGAATCACCGTTGCAGGTTTATAGCGATGTGTACAAATACTCA CCGGTGAAAAATACATGGCAAAAAGTTGATACTATATCTCCAGTTGGATTAACAGGGCAT ACGGGAGTAAAATTAAACGAAACGATGGTACTTATTACCGGAGGGGTTAATGAGCATATC TTTGATAAGTATTTTATTGATATAGCGGCTGCGGATGAAAGTGAAAAAAATAAAGTCATC TATAATTATTTTAATAAACCTGCCAAAGATTATTTTTTTAATAAAATCGTATTTATCTAC AATGCTAAAGAGAACACATGGAAGAATGCCGGTGAGCTGCCAGGCGCGGGGACGGCAGGA TCGTCATCGGTAATGGAAAATAATTTCTTGATGCTGATTAATGGTGAGCTCAAACCGGGT TTACGTACCGATGTGATTTACCGCGCCATGTGGGATAACGATAAGCTAACATGGTTGAAG AACAGCCAGTTACCGCCATCGCCTGGAGAACAACAGCAGGAAGGGTTGGCCGGAGCATTT TCGGGCTATAGCCACGGTGTCCTGCTTGTCGGTGGTGGCGCGAATTTTCCGGGAGCAAAA CAAAATTATACTAATGGAAAGTTTTATTCCCACGAAGGGATAAATAAAAAATGGCGAGAT GAAGTCTATGGTTTGATTAATGGCCATTGGCAATATATGGGTAAAATGAAACAACCTCTC GGCTATGGTGTATCAGTAAGTTATGGTGATGAAGTTTTCCTTATTGGTGGTGAAAATGCT AAAGGGAAACCTGTTTCGTCTGTAACCTCCTTTACCATGCGTGATGGTAATTTATTAATA AAATAATTTTTTAAATACAAAAATAAAGTTAATTGATAAGCGGAGTATTTTATGAAAATC AACAGATATCTTCTGGGTATGGTTTCGTTTATAGCATTTTCATCATATCTACAAGCGGCA ACCCTTGATTATCGGCATGAATATGCTGATAGAACCAGAATTAATAAAGACCGTATTGCT ATAATTGAAAAGCTTCCTAACGGCATTGGTTTTTATGTCGATGCCAGCGTTAAATCGGGA GGAGTAGATGGTGAGCAGGATAAGCATTTAAGCGATCTCGTCGCAAACGCTATAGAACTG GGCGTAAGTTATAATTATAAAGTTACGGACCATTTTGTTTTGCAGCCTGGATTTATATTT GAAAGCGGTCCAGACACTTCAATTTATAAGCCTTATTTAAGGGCGCAATATAATTTTGAT TCTGGTGTTTATATGGCTGGTCGTTACCGTTATGACTATGCAAGGAAGACAGCTAACTAT AATGATGATGAGAAAACGAATAGATTTGATACTTATATAGGTTATGTTTTTGATGAGTTG AAATTGGAATATAAATTTACCTGGATGGATAGCGATCAAATTAAATTTGATAACAAAAAA ACAAACTATGAACATAATGTGGCTTTAGCCTGGAAACTGAATAAGTCATTTACACCATAC GTTGAGGTCGGAAATGTAGCGGTGAGAAATAATACCGATGAGAGACAGACCCGTTATCGC GTTGGATTACAATACCACTTTTGAGAAAGGTTAAAGAGTTACTGTACTAATCTTTGCTTA GTATTCATATCGATAATCTTATAGCCCGTAGCTACGTTACAGAACGTTAGACTTTGTCTT GAGTATTCACGTCCTTAACGTAGCTACGAACAAGGATGATAAACAATGAATATACGCCTT ACATAGCTACGATCTCAGGCGGTTGTCGGAAAGTGCCGGTTGATAGTGTCTTATTCGGCA ATTGATATGACTTAAAAATTAATTCCGTAAGCATTTCAGACGGTAACAGCAAATAAGGGT TTTATTGTGATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACACGTCCACAAAAAAAT GCTTTATTTTCAGCATGGCTGGGTTACGTTTTTGATGGCTTCGACTTTATGCTGATTTTC TACATTATGTATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTT GCCACAGCGGCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGAC AAATTTGGCCGTAAGCCGTTAATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGG TTAAGTGGCCTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGTTTTATTGTCGGTATG GGGATGGCGGGGAAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCAT TTAAAATCTAAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCA GCCTATTTTATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGT TTGCTACCCGTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGG GAAGAAGCCAAACTCAGTGGTCTCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCT TTGTCAATGAAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATT GTTCTGTTCTCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTG GCGGGAGAGGGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGC ACTGTATTGGGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACG TTCAGCATTGGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAA GATAATTATTTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTT GGCGGGCTGGTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGT ACCGGGCTTATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACC TGGCTTGGAATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACC GCAACAATTCTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAA AGGTTTCAGTCAACAAAAGAATTTTAATAGAGGATAAATGATGACGAAATACGGTGTTAT AGGTACAGGTTATTTTGGCGCTGAACTGGCGCGATTTATGTCTAAGGTTGAAGGGGCGAA AATCACTGCGATTTACGATCCGGTAAATGCGGCTCCGATAGCGAAAGAGCTGAACTGTGT CGCCACTTCAACGATGGAGGCGCTTTGTACCCATCCTGATGTGGATTGCGTAATTATTGC TTCACCAAATTACTTACATAAAGCGCCGGTCATTGCGGCGGCTAAAGCGGGTAAACACGT GTTTTGTGAAAAACCTATCGCCTTAAATTACCAGGATTGTAAGGATATGGTTGATGCCTG CAAAGAAGCTGGTGTTACCTTTATGGCGGGTCACGTTATGAACTTTTTTCACGGGGTTCG CCACGCTAAAGCGCTCATCAAAGCCGGTGAAATCGGTGAAGTTACACAAGTTCACACTAA ACGTAATGGTTTTGAAGACGTGCAGGATGAGATCTCATGGAAGAAGATTCGCGCAAAGTC AGGTGGGCATCTGTACCATCACATTCACGAGCTAGATTGTACACTGTTCATCATGGATGA AACCCCATCCCTGGTTTCAATGGCGGCGGGGAATGTTGCGCACAAAGGTGAAAAATTTGG TGATGAAGATGATGTTGTCCTAATCACCCTTGAGTTTGAAAGCGGTCGTTTCGCGACACT TCAGTGGGGATCATCGTTCCACTACCCTGAGCACTATGTATTAATTGAGGGCACGACAGG TGCAATTCTCATTGATATGCAAAACACGGCTGGTTATCTAATAAAAGCGGGCAAAAAAAC ACACTTTCTTGTGCATGAAAGCCAGGCGGAGGATGATGATCGTCGCAACGGTAACATATC CAGCGAGATGGATGGCGCAATCGCTTATGGTAAACCCGGTAAACGTACGCCGATGTGGCT CTCATCAATTATGAAACTGGAGATGCAGTACTTGCATGATGTGATAAACGGTCTGGAGCC AGGCGAGGAGTTTGCTAAATTGCTAACGGGAGAAGCGGCGACAAATGCCATTGCTACCGC TGATGCTGCGACGCTTTCTTCAAACGAGGGGCGCAAAGTTAAACTCACTGAAATTCTTGG CTAAAATTTAAAGCCGGATGGTGGTGTTATTGGCCGGTGGCGCTGCGCTTATGTAGACTG GATAAGGCGCCCGTGAACTGTGCCGCCATCCGGCAATGGACGGGGGCTTAATGCGAAAAA AAGCCCGTACATTCGTACGAGCTCTTTCTTAAATATGGCGGTGAGGGGGGGATTGACTCG CTGCGCTCGCCCTTCGGGCAGCCCGTTCGCTGCGCGCCCGGTCTGTCCAACTGGCTGCGC CAGTTGTCGAACCCCGGTCGGTGGTTCTCATCCCCCCTTGGTTTGGGGGATACATATAAG CAAAAAGCCTGTACTTCTGTACAGGCTCTCAACTTGAAGATGGCGGTGAGGGGGGGATTC GAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGAC ACCTCACCAAATTGTCGCTCCAGCATTACTGGAACGGGCGCTAATGTAGGGAAATATCCT TTCTACGTCAATCAACTTTTTTAAAAAAAAGCGCTTTTATACAAACTTCCATCAATCTGT GGCTTTAATAAGCGAAAACTGCTTTTTTTGCCCGCGCCGGGAAATTTGCTATGCTGCACA TCCCGTTGAAAACGCTGATAACAGGCGCAATCACATTCCGCACAATACTGCTCAGGAGAT AACATGGAGATAATTTTTTATCACCCGACATTTAACGCCGCCTGGTGGGTAAATGCGCTG GAGAAGGCTCTCCCACATGCGCGCGTTCGTGAATGGAAGGTCGGTGATAACAACCCCGCA GACTATGCGCTTGTATGGCAGCCCCCGGTTGAAATGCTGGCCGGAAGACGCTTAAAAGCC GTCTTTGTGCTGGGCGCGGGGGTGGATGCAATTCTGAGTAAATTAAATGCGCATCCGGAA ATGCTGGACGCCTCCATTCCTCTATTCCGTCTGGAAGATACCGGAATGGGCCTGCAAATG CAGGAGTATGCCGCCAGCCAGGTATTACACTGGTTCCGTCGTTTCGATGATTATCAGGCG CTGAAAAATCAGGCGCTATGGAAACCGTTGCCGGAATATACCCGCGAAGAGTTTAGCGTC GGTATCATAGGCGCAGGGGTACTGGGCGCAAAAGTGGCAGAAAGTCTACAGGCGTGGGGG TTCCCGTTACGTTGCTGGAGTCGTAGCCGCAAATCCTGGCCTGGCGTGGAAAGTTATGTA GGGCGTGAAGAACTGCGCGCTTTCCTGAACCAGACGCGGGTGCTGATTAATCTGCTGCCG AATACGGCCCAAACGGTAGGAATTATTAATAGCGAATTGTTGGATCAATTGCCGGATGGC GCTTACGTGCTGAATCTCGCGCGCGGCGTTCATGTTCAGGAGGCGGATCTGCTGGCTGCG CTTGATAGCGGTAAGCTAAAAGGCGCGATGTTGGATGTCTTTAGCCAGGAACCGTTACCG CAGGAAAGTCCATTATGGCGCCATCCGCGAGTCGCCATGACGCCGCACATTGCGGCAGTC ACCCGTCCGGCGGAAGCCATCGATTATATTAGCCGCACCATTACCCAGCTGGAGAAGGGA GAGCCGGTGACGGGGCAGGTGGATCGGGCGAGAGGATATTGGTATCAACCCGGCGCGGGC CGGGTTTCGCTAAAAAACGCTGGCGATACCTGCTATCCTTGGCGGAAATGACTACAGGAG AGAGCAATGTATCCCGTTGACCTGCATATGCATACCGTCGCGAGCACTCATGCCTACAGT ACTCTGAGCGATTATATCGCGGAAGCCAAACGCAAAGGCATGAAACTTTTTGCGATTACC GATCATGGTCCGGACATGGAAGATGCGCCGCATCACTGGCAGTTTATTAACATGCGCATC TGGCCGCGTCTGGTTGACGGCGTGGGGATACTGCGTGGCATGGAGGCGAATATCAAGAAT ATTAACGGTGAAATTGATTGTTCCGGAAAGATGTTCGACTCGCTGGATCTGATTATCGCA GGCTTTCATGAGCCCGTTTTTGCGCCGCATGATAAAGAAACGAATACTCAGGCGATGATC GCGACCATCGCCAGCGGCAAGGTGCATATAATTAGTCACCCGGGAAATCCAAAGTATCCA GTGGAGGTTAAAGCCATCGCGCAGGCGGCGGCGAAACACCAGGTAGCGCTGGAAATCAAC AACTCTTCTTTTCTGCATTCGCGTAAAGGAAGCGAAGATAAGTGCCGCGCGGTCGCTGCC GCCGTACGCGATGCGGGAGGCTGGGTAGCGTTAGGCTCTGAGTCCCATACGGCCTTTACG CTTGGCGATTTCACCGAATGCCGGAAAATTCTGGATGCGGTGAATTTTCCGGAAGATCGA ATCCTGAACGTCTCTCCGCAGCGCTTACTGGCCTTTCTCGAGTCACGCGGTATGGCGCCT GTACCGGAATTTGCCGAACTTTAATCGTTATTTACGGGAAGGTATCAATGAATGAGTTTT CAATCCTGTGCCGTGTGCTGGGATCGTTGTTTTACCGCCAAGCGCAAGATCCTTTACTGG TTCCGCTGTTTACGTTAATCCGTGAAGGTAAACTGGCGGCAGACTGGCCGCTGGAGCAGG ATGACATGCTGGCGCGTTTACAGAAAAGCTGCGATATCACGGAGATTTCCACTGATTACA ATGCGTTATTTGTTGGGGAAGAGTGCGCGGTAGCGCCATACGGCAGTGCGTGGGTCGAAG GCGCGGAAGAGTCTGAGGTGCGCGCTTTTTTAACGTCGCGAGGGATGCCGCTGGCCGATA CGCCTGCCGATCACATTGGCACTTTATTGCTCGCGGCCTCCGGGCTGGAAGATCAGTCTG CCGAAGATGAAAGTGAAGCGCTGGAAACCTTATTTGCCGATGATCTGCTTCCCTGGTGCA ATACCTTCCTCGGTAAAGTTGAAGCCCATGCCGTTACGCCAGTCTGGCGCACTCTGGCGC CGCTAACGCGTGATGCGATAGGGGCCATGTGGGATGAACTTGAGGAAGAAGATGAAGAAT AATGTGATGTAAATCACCATTAACTGCAACGGGTTTTGCATGATTGCATAAAATGTGTGC GTGATCTCATTAATGTGCCGCTTTTCTGTTATGATGCGCGCGATGAACATACTTCTTTCT ATTGCTATCACTACGGGCATCCTTTCTGGAATATGGGGATGGGTGGCCGTCTCCCTGGGG TTACTAAGCTGGGCCGGTTTTTTAGGCTGTACGGCTTATTTGGCCTGTCCGCAGGGCGGC TTTAAGGGATTGTTGATTTCCGCCTGTACGCTGTTAAGCGGGATGGTGTGGGCGCTGGTC ATTATTCACGGTAGCGCGTTGGCGCCGCATCTGGAAATTGTGAGTTACGTGTTGACGGGG ATCGTGGCATTCCTGATGTGTATCCAGGCAAAGCAGCTATTGCTTTCTTTTGTTCCGGGA ACATTTATCGGCGCCTGCGCGACATTTGCAGGGCAGGGTGAGTGGCGGTTGGTATTACCG TCGCTGGCGCTGGGGCTAATCTTTGGCTATGCCATGAAAAAGAGTGGGCTATGGCTGGCA TCACGCCGCGAGCAACATTCAGCGAATACGGCGGTCACAAAGTAAAAAAGCGTGGGGTTT TCCCCACGCTTTGTCGTATTCATCAGGATTCTGGCGGTACTGACAGCTCACGGTATTTCA CCAGAATATCATTTTGCCTGTCCGCTTTATTCTGCAAATCCGACAGTCCGCGATCGATAC CATCATTAATGAGGAAGATAACGCCGGTTTCAATGGCTGACGTCAGACACAGCATCACCG GTTCGTTCGAGGTATAGCCGATTTCGCCTTCCAGTAAGCGCGGGTAATCAATAAAACGGA ACACGCCTGCCTGTACTTCATAGGAAAGGATCGTTTTACTGGTGTTCACCGAAGAAAGGA TCTCGCCCGTACTGACGTTAACCACGCGCAGGTTGACAGCAGTCTGATCCAGCTGATACT GCGTATCGGCGCCAATACCGAAATATCTTGCGCCGACCCCGGCGGATTTGACGTTACTTT CATAACCAATAATAGAACCTTCCACCATAATATTTGCCGCCGTCAACGACTGAAGCGGGA TACGGTTATTCATCGCCACGGTGCCGTTTTCCTGGGCTGCGGGAATAATTTTCCGTTCAT TCAAAAGATTCTGTAAGCCTTGTCGTTCTAGTGGGATAAACGAGCGCGAATCTTTCAGCG CGGTGACCAACATAGCGGTGGCGCTCTGCGGCACAGCCGTGGAAAAGTTACTTGCCGGGT AAGGTTTAAATTGGCCCGTTTCATCCTGAATGTTATATACCGAAACAAAGATCTTACCGG TGGGAGCAGGTAAGTGCGTCAAATCTTTGTAACTTTGTGCGGGGGGCATTAATGTCGGTT TCGCAGCTTGTTTCGGCGGGGCAGTTAAGCATCCGCTCAACGATAAAACGGCAACCAAAA TAAGTAAGCGCGGCATGATTTATATCCTTTAGTGACTGTAGGTTAAAAATCGGTTGACTG AGTTTGTAAACCTGACACTTCGATGGTCGAGGTTCTTCCCGGTTTTCTGTCCGTGACGTT GAGCTGGAGCTGTCCGTCGCGATTAGCGATATCGATAATAAGATCATTGGTCACCATACG TCCTGGTTTTCCGGTATTAATATTGGTCAACAAGCCGCCCAGAATTTGCGATTGAATAGC CTGCGTAAAGTTATCCAACGCTGAGGGGGTCTCGATACCAAGATCGTTATCATAAGCGGG GTCTTTATATGAATTTTGCGCCTGGGCGCTATTCAATAAAAGGGAACCGTTATTGGGGTT TCCACCAAAGTTAGGATTACGGAACTGGAACGTCATATTTCGAGCCCAGGTTAATGGCGA AAAAAGCATGAGCAGCACTACTGCATGTTTAACACGCATGAGAGCCTCCGGATAAAAATC ATGTTTTAGAATTCATCACGCGCTAAATCACTCGTACTTAAGAGCGTTTGATCTATTTGT CGGCGATTTAATGCTTCCTCTGTTTGCGCTAATGCGAAGACGACGGTTTTCTCGAAGTCT CTTTTCATTGGAAATAAAAAGGTCTGGAAAATAACGTCCTGGTTTACCGTTATGGTGATC CAGCTTCCCCAACGCGCACTGGGTCTTTCATTAATGGTCAGGTTGCCGGTGTATTCGCTT TCCCATTTGTCGCTGAATGCACGATAGAATTCATGTCCTATGGAAGAGACGGTATGGTCG GTTAACAATCCGGGAACCTCGACTTCAACTTCATTGGCATGGAGGTTTCCGGTAGCGAAC AGTAACTCTGCTGCTACAATCCAGGTCAGATAGCGTTTCATGGCCTTACCGCCTGAGATT ATCGTTTGCTCATGAAACTGCCTGGGTGCGATTTTTGACAGGTATCTTTTTGAAAAGATT ATAAAGATGTGTCTTAACCGTATTCTCGCTGATAAATAGCGGCCTGGCGATTTCATTATT AGAGGCACCAATACGTAACTTATTGAGGATCTCTTTTTCGCGATGAGTGAGTAATGCGGA CTCGGTGCTGTTGTAGCGGTAATTTCCTGAGTGTGTAATCAGGTAACTGGCTAATTTTTG TGAAAAATAGCATTCGCCCCGCAGAATACCCTGTAATCCGCGGACCACGTGTTCCTGGTC TTCAGTGGCGTAAAACACGCCGTTAATATGAGGCCAGTTTTGAATTTCACGGTAGGGATA ATCGTCAGGGGTATTTAACAATAATGTTTTTATATTATTGTGTTTGCGGCTTAAATTATC CTGCCAATAGTGGATAAGCTTCTTATCCGCTTCCATCATATGCATTAAAACAATGCAACC GGCTGAGATATCTTCCAGAGAACGTTGAATATTATGCAGTTGTCCGGTTATGGCCAGCGA TTGCTTTAAATGTTGCAATAATGCCGTAGCTTGCAGAGATGGCTTTGTGATCAACAATAG TGTGTGACCATGACTACTATGGACTTCATTAAACATGATGAGACTCCACTTTTTTTAATC GCACATCTGACAGCTGCCCCCATAAAATAAAGGCACCAGAAGTACTGACAGATGTTGCAC TGCTGTGGGTTGAAATAGCCCATTATCCAGAAAGAGAAAAAGATTTACGAAAATACTTTT AACTGTTTTCAATCTAGCCATTACAAATCTTAAAGCAAGTGGTAAACTTGTAACAAGATG TAAAAATATATATTAAAATGTTGTTTTTGGGTTTTTTTGAAGTTTAGATTTGATAGTAAA GTTGTACATTTCGCTGTTATTGCATAGATTTAAAAAATCATGCAAATTATAATAATTCAT TGATTTTTAATCATTTTAATTATTGTATGTCATGTTTTGATGTTATTTTTTCTTAAAATT TGAGACGTGGCATTAACCTGGACAGCACAAAGACAAAAAAAGACGAAGTGTGTCACGTCT TGTGCGTATTGCCCCCCATGGGAAGCATAAGAACATCCCCAGGGCGGCATAACACACACC AACACTTCATTTTTTAGGTGCGCGATACACTATCTTCTGTGGCCAAAAATCAATTATAAA AAATCACATGGCTATCGTTTTATTAGCACTTTGGTATGAGCGTAAATAACAAAATACCAC GCGTGGGTGAGTTATTAAAAATGTTTCCACGGACATACTCTGCATCGTAACGACGCGTTA ACAAAAAACGCATGTCGCTAACAAGGTAATAGATAATTTTCGCTATGTACGACCAGGTCC AGGGTGACAGCATGAAAAACAAATTGTTATTTATGATGTTGGCAATACTGGGTGCGCCTG GGATTGCAACCGCGACAAATTATGATCTGGCTCGTTCAGAGGATAATTTTGCGGTAAATG AATTAAGCAAGTCTTCATTTAATCAGGCGGCCATTATTGGTGAAGTCGGCACGGATAATA GTGCCAGAGTACGCCAGGAAGGATCAAAACTATTGTCCGTTGTTTCACAAGAAGGAGAAA ATAATCGGGCGAAAGTCGACCAGGCAGGGAATTATAACTTTGCGTATATTGAGCAAACGG GCAATGCCAACGATGCCAGTATATCGCAAAGCGCTTACGGTGATAGTGCGGCTATTATCC AGAAAGGTTCTGGAAATAAGGCCAATATTACCCAGTACGGTGCGCAGAAAACAGCAGTTG TAGTGCAGAAACAGTCGCATATGGCTATTCGCGTCACCCAAGGCTAATACCGTTACGACT TTTAAATCAATCCGATGGGGGTTTTACCATGAAACTTTTAAGAGTGGCAGCATTCGCAGC AATCGTAGTTTCTGGCAGTGCTCTGGCTGGCGTCGTTCCACGATGGGGCGGCGGCGGTAA TCATAACGGCGGCGGCAATAGTTCCGGGCCGGATTCCACGTGGAGCATTTATCAGTACGG TTCCGCTAACGCTGCGCTTGCTCTGCAAAGCGATGCCCGTAGATCTGAAACGACCATTAC CCAGAGCGGTTATGGTAACGGCGCCGATGTAGGCCAGGGTGGGGATAACAGTACTATTGA ACTGACTCAGAATGGTTTCAGAAACAATGCCACCATCGACCGGTGGAACGCTAAAAACTC CGATATTACTGTCGGTCAATACGGCGGTAATAACGCCGCGCGGGTTAATCAGACCGCATC TGATTCCAGCGTAATGGTGCGTCAGGTTGGTTTTGGCAACAGCGCCACGGCTAACCAGTA TTAATTTAGCGTCTGCGCTAATAAAAAAACAGGGCGTAAGCGCTGTTTTTTTTCGGGAGG AAATTATGCATACTTTATTGCTCCTTGCCGCACTTTCAAATGAGATTACGTTTACCACGA CTCAGCAAGGCGATATTTACACGGTGATCCCTCAGGTCACAGTAAACGAACCCTGCGTCT GTCTGGTGCAAATTCTCTCTGTGCGCGACGGCGTCGGGGGAGAAAGCCATACACAGCAAA AACAAACGCTATCTTTACCTGCTAATCAACCGATTGAGTTGGCTCGTCTTAGTGTAAATA TATCTTCAGAGGACTCGGTTAAAATTATTGTTACTGTTTCGGACGGACAATCACTGCATT TATCACAACAATGGCCGCCTTCTGCACAGTAGTTTTTGATGGTGGCGGAAATGGATTGGC TGACCTGGGTATTAAAGAGGCGATAAAAGCGTCTCATCGTCTCGGCATGTCGCTAAAAGG TAACGCCGAACCCTCGAGGATGACTAATCATTGAGGAGTTAACATGTCCGTAATCAAGAA AAATATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATCCATTCTGCGGTAGGGCA ACAAACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATTGTTGAGCCACTGTGCGA TATTTCTACTCACGCCGAAAATATTGATTTAACCTGCCTACGCGAAGGTAAAAAGCAAAT GCACCGGATAGACCTTCGGCAGGCATCTGGATTACCGCAGGATATTCAGTCCATTGCGAC GGTACGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTGATGAATATTGAGTACCG TTAACGGCGGTGTCATAGATATAAAAAGAGCGACTCTGTTGAAAGCCCTGCTGTACACTT TGCAGATAAGGTGAGACAAAAGGGGGGGGTTATGACATCACGTCTTCAGGTCATACAGGG TGATATCACTCAACTTAGCGTCGATGCGATTGTGAATGCCGCTAACGCATCATTAATGGG CGGCGGTGGCGTAGACGGCGCAATTCATCGCGCGGCGGGGCCGGCATTGCTGGACGCCTG TAAACTCATCCGTCAGCAACAGGGCGAATGTCAGACGGGACATGCGGTTATCACGCCTGC TGGCAAGCTTTCGGCAAAGGCGGTTATTCACACAGTGGGGCCCGTCTGGCGAGGCGGCGA ACACCAGGAAGCTGAGCTACTCGAAGAGGCATACCGGAATTGTTTGCTGCTTGCCGAGGC GAATCACTTTCGTTCCATCGCTTTTCCGGCAATCAGTACCGGCGTTTATGGCTATCCACG CGCCCAGGCCGCTGAAGTCGCCGTCAGGACGGTTTCAGATTTTATTACCCGTTACGCTCT GCCTGAACAGGTATACTTTGTCTGTTATGATGAAGAAACTGCCCGGCTTTACGCAAGATT ACTTACTCAGCAAGGCGACGACCCTGCCTGATAAAACACGCCTGGAGCGTGCCGTTGAAC CGCTATGCGCGCGCCATCCCGGAGAGTGCGGCATTCTTGCGCTGGATAACAGTCTGGACG CTTTTGCCGCCCGCTACCGCCTGACCGAAATGGCGGCGCGGACGCTGGATGTGCAGTATT ATATTTGGGAAGACGATATGTCCGGGCGGCTGCTCTTTTCGGTTCTGCTGTCGGCGGCGA AGCGCGGCGTTCATGTTCGTCTGCTGCTGGATGATAACAATACGCCTGGTCTGGATGATA CGTTGCGCTTGCTGGATAGCCATCCTAATATCGAAGTTCGTCTGTTTAATCCTTTCTCTT TTCGTACGCTACGCGCGCTGGGATATTTGACGGATTTTGCGCGGCTGAATCGGCGGATGC ACAATAAAAGTTACACTGCCGACGGCGTAGTGACGCTGGTCGGTGGGCGCAACATCGGCG ATGCCTATTTCGGCGCTGGCGAGGAGCCGCTATTTTCCGATCTGGACGTGATGGCCATTG GCCCGGTGGTCAATGATGTCGCCAATGATTTTGAACGTTACTGGCGCTGTAGTTCAGTGT CGACATTGCAGCAAGTATTATCCCTTTCTGAGCAGGAACTGACGCAGCGTATCGAACTTC CCGAATCCTGGTATAACGATGAGATCACCCGCCGTTATCTGCATAAGCTGGAAACCAGCC AGTTTATGGCGGATCTCGATCGCGGAACGTTGCCGCTGATTTGGGCAAAAACACGCTTGC TTAGCGATGACCCTTCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTTCTTCCGCAGC GATTATTTGACGTGATGGGGTCGCCGACGGAGCGTATCGACATTATTTCCGCTTACTTTG TCCCTACGCGCGCAGGCGTGGCGCAGTTGCTTAATCTGGTCAGGAAAGGTGTGAAGATCG CCATCTTAACTAACTCTCTGGCGGCCAACGATGTGGCGGTCGTTCACGCAGGGTACGCGC GCTGGCGCAAGAAATTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAACCGACCCGCG AACATGAAACCGCCGTACATGATCGCGGACTCACCGGGAACTCAGGTTCCAGCTTACATG CTAAAACGTTCAGTATTGATGGTAGTAAGGTGTTTATCGGGTCGCTTAATTTTGATCCCC GTTCAACGCTTTTAAATACCGAAATGGGCTTTGTCATTGAAAGTGAAACGCTGGCGACGC TTATTCATAAGCGTTTTACGCAGAGCCAACGCGATGCGGCCTGGCAACTGCGGCTGGATC GCTGGGGACGAATTAACTGGATCGATCGTCAGCAAGAAGAGGAAAAGGTGTTAAAGAAAG AACCCGCTACGCGTTTCTGGCAGCGAGTTCTGGTACGGTTGGCGGCAATTTTACCTGTGG AATGGTTGCTGTGAACCCGCGCGCGGAAAACTACCCGATCGCGGCGCGGCTTTCTTGTTT TACCGGCGGTTTACCTGAAAAGAGAAATTTCAGGAGCGGGATGCGTAAATGAATTTCATA CAGAATTAACGCAATACCCATAACAAATATCAGCCCGCACAAGAACCCGATCAGGTTGGA GGAGATATGCGGTGTAATATACGCGCCAAAGAAAAGCGTTAAGGGATGATGCACCAGATA AATAAACAGCGAAGCATTCACGAAATAGGTGACACGCGCGGACTGAAAGTTTAACAAGCG ATGCCCCAGTGAAAATACCACGTTCACCATCCATAGCCCCATTACCATCGTAATCACGGA TTCGGTTTCGTACATCCAGGCGTCGCCGCTCCCATAACGTTGATTCAGCAGATACGCGAT AAAAGCAACGGCAGCGCCTAAAGTGCATCCGCGTGAGGGCGTGGTGAAGCGCGCTTTCAG ATCGGGGTGAATGAAGGCCAACGCGCCGAGAATAAAAAACGGCACATAAAATAGCGTTTG CATCACAATAAAATTGAACATGCCGTCACTGAGGATTGCCGGATATACGATGAATATAAT GCGCCTGATAGCAGCGTACGCCACCCCCAGCAGGAAAAAAATAAGCGAAAGTTTGGCCAG CGAAATAGCGGCGGGACGAGGCTTGCTTGTTTCCTGCCTTTTTTGGAACCAGGTAAAAAT CCCGATGCTGACGGTGGTTAATATCACCAGCACCAGTAAAAACCACAGATGTGAAATGAG TTCCCACGCTAACGTATTATATTTTTCATAGGCAGAGAGTGTAGGCCAGTTCTCTGTTTT CTCTTTGACATATTGCAACAGGATAAATTGCGGCAAGGTAAGCAAAGGGATTGCGGTAAG CATGGGAATACCCACACGTTCTACCCGTACTTTCCACCAGTGTTTTAATGGATAACGTAA AAATAACATGTACGAAAAATAACCAGAAATAACAAAAAACACCTGCATACGAAAAGCGTG GATAAAATCGTTAAACAGGGTTAGCCACCACGATGGCGCGGCGCTATTGACATGCCAACT GTGAGTGGAATAGATCAACGAGATATGAAAGGGAATCCCTAACAACATCAGCCATGCGCG GATAGAGTCAAGAAAATATTCACGCGGCGCGGGTACAGAGCTCATATAAGGTCACGTATT CTCAGATTTTTCACCTTATCCATAAGGCGAATTATAGTTACATTCGGTAGCAACCCTACA CCAACTCCGACAACCTGTCTCCAGGATAAGCACGCAAAGTGAAAACAGGCGCGGGAGGTG CTTAATCCATGAGCCAGCGCGCTGAACAAAGCCTGGATTCAGTTGTCGTAATGCCTGATT ATCCATTAAAATGGATCGGATCGATATAAGCACACAAAGGGGGAAGTGCTTACTTATTAT GAAACATAAACGACAAATGATGAAAATGCGTTGGTTGGGCGCAGCTATTATGTTAACGCT CTACGCATCATCGAGCTGGGCGTTCAGTATTGATGACGTGGCAAAACAAGCTCAATCTTT AGCCGGGAAAGGCTATGAGGCGCCTAAAAGCAACTTGCCCTCCGTTTTCCGCGACATGAA ATATGCGGATTATCAGCAGATCCAGTTTAACAGCGATAAAGCCTACTGGAACAACTTAAA GACCCCTTTTAAGCTCGAATTTTACCATCAGGGGATGTACTTCGATACGCCGGTCAAGAT TAACGAAGTGACGGCGACGACGGTCAAAAGAATCAAATACAGCCCGGATTACTTCAATTT TGGCAATGTTCAGCACGATAAAGACACGGTAAAAGATTTAGGCTTCGCCGGGTTCAAAGT CCTGTACCCCATTAACAGTAAAGATAAGAACGACGAAATCGTCAGTATGCTTGGCGCCAG CTATTTCCGCGTTATCGGCGCAGGCCAGGTGTATGGCTTATCTGCGCGCGGCCTGGCGAT TGATACCGCCTTACCATCTGGTGAAGAGTTTCCCCGCTTTCGCGAGTTCTGGATTGAGCG TCCAAAACCCACCGATAAGCGTTTGACCGTCTATGCATTACTGGATTCTCCGCGCGCGAC CGGCGCTTACCGTTTTGTGATCATTCCTGGCCGCGATACCGTGGTGGACGTGCAGTCAAA AGTCTATCTGCGCGATAAGGTGGGCAAGCTGGGCGTTGCGCCATTAACCAGTATGTTCCT GTTTGGGCCAAACCAGCCGTCGCCGACGACCAACTATCGTCCGGAATTGCATGACTCGAA CGGCTTATCCATTCATGCGGGTAATGGCGAGTGGATTTGGCGTCCGCTGAACAATCCAAA ACACCTCGCTGTGAGCAGCTATGCGATGGAAAACCCTCAGGGATTCGGCCTGTTGCAGCG TGGTCGCGAGTTCTCGCGCTTTGAAGATTTAGACGATCGCTATGACCTGCGTCCAAGCGC CTGGATTACCCCGAAAGGCGACTGGGGCAAAGGTAAGGTTGAACTGGTTGAAATTCCGAC CAATGATGAAACCAACGATAACATCGTCGCTTACTGGACTCCGGATCAACTGCCGGAACC GGGTAAAGAGATGAACTTCAAGTACACTCTGACCTTCAGCCGCGATGAAGATAAACTTCA TGCGCCGGATAATGCCTGGGTGCTGCAAACACGCCGCTCAACGGGCGACGTTAAACAGTC GAATCTGATTCGCCAGCCCGACGGCACTATTGCCTTTGTGGTGGATTTCGTTGGCGCCGA CATGAAAAAACTGCCGCCGGATACGCCCGTCGCTGCACAAACCAGCATTGGCGATAACGG TGAAATCGTTGACAGTAATGTACGCTATAACCCAGTCACTAAAGGCTGGCGTTTAATGCT GCGCGTGAAAGTCAAAGACGCGAAGAAAACCACGGAAATGCGTGCCGCATTGGTGAATGC CGATCAGACGCTAAGTGAAACCTGGAGCTACCAGTTACCTGCCAATGAATAAAACAACTG AGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCATTGCCGAAAACTGACA TCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTACTCGCGAGAAGACGATT CACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCGGATTCATTGGCGAAGG GGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCTATGCCAAAAGCGACGC GCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGCCGTTTCTGGGATCGCC TGCGTGGGCGGGATGTTACGCCGCGCTATGTTTCTCGTCTGACAAAAGAAGAGCAGGCGA GTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATTTTGTTAATTTTGACTC TGGCGCAAACCGTCGTTGCGACCTGGTATATGAAGACCATTCTGCCCTATCAGGGATGGG CGCTCATCAATCCTATTGATATGGTGGGGCAGGATATTTGGGTCTCCTTTATGCAGCTCC TGCCCTACATGCTGCATACCGGTATCCTGATTTTGTTTGCCGTGCTGTTCTGCTGGGTGT CTGCCGGATTCTGGACTGCGCTGATGGGCTTCCTGCAACTGCTTATCGGGCGCGATAAGT ACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCGGAACACCAGACGGCGC TGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCCGGTCTGCGCGCGACCT GGGAGTCCGTTAAAGCTACAGGCAACGCCGCGCATTTTGACGTCTATATCCTTAGCGATA GTTATAACCCGGATATTTGCGTGGCGGAGCAAAAGGCGTGGATGGAGCTCATCGCGGAAG TGCAGGGCGAAGGCCATATTTTTTACCGTCGCCGCCGCCGCCGTATGAAACGCAAAAGCG GCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGCTATATGGTGGTGCTGG ACGCGGACTCAGTGATTAGCGGCGAGTGTCTGAGCGGGCTGGTGCGCCTGATGGAAGCGA ACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGGATGGATACTCTGTATG CCCGCTGCCAACAGTTTGCGACCCGTGTTTATGGACCGCTGTTTACCGCCGGGCTGCACT TCTGGCAGTTGGGGGATTCGCACTACTGGGGGCACAATGCCATTATCCGCGTGAAGCCGT TTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCGTTCGCCGGATCGATTC TTTCCCACGACTTTGTTGAGGCGGCGCTAATGCGTCGGGCAGGGTGGGGCGTCTGGATTG CCTACGATCTCCCCGGTTCCTATGAAGAGCTGCCGCCAAACCTGCTGGATGAGCTTAAAC GCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTGTTCCTGGTGAAAGGAA TGCACCCGGTGCATCGTGCCGTGTTCCTGACCGGGGTAATGTCATACCTGTCCGCGCCGT TATGGTTTATGTTCCTTGCGCTTTCTACCGCGCTGCAGGTCGTTCATGCGTTAACAGAGC CGCAATATTTCCTTCATCCGCGCCAGCTTTTTCCGGTCTGGCCGCAGTGGCGTCCGGAAC TGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTGCCGAAGCTGCTCAGTA TTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTCTGGCGCGTTACGCTGT CGCTATTGCTGGAAGTTCTGTTCTCCGTGTTGCTGGCGCCGGTGCGTATGCTGTTTCATA CCGTGTTTGTGGTCAGTGCGTTCCTCGGCTGGGAAGTGGTCTGGAACTCACCGCAACGCG ACGATGATTCTACGCCTTGGGGAGAAGCCTTTATGCGTCACGGCTCTCAACTGCTGCTGG GGCTGGTCTGGGCGGTTGGTATGGCGTGGCTGGATTTACGCTTTCTGTTCTGGCTGGCGC CGATTGTCTTTTCGCTTATTCTGTCGCCATTTGTTTCGGTGATCTCCAGTCGTTCAACGG TAGGATTACGCACCAATCGCTGGAAGCTGTTCCTGATCCCGGAAGAGTATTCGCCGCCTC AGGTGTTGGTCGATACTGATAAATATCTGGAGATGAATCGCCGCCGTATTCTGGACGATG GCTTTATGCATGCGGTTTTTAACCCGTCGCTTAATGCGCTGGCGACCGCGATGGCCACCG CGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGTCATGTGGAGCAGGCGC TAAACGAAACGCCGGATAAACTGAACCGCGATCGGCGTCTGGTTTTGCTCAGCGATCCGG TGACGATGGCGCGTTTTCACTATCGGGTCTGGAATGCGCCAGAGAGATACTCTTCCTGGG TAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAGGGACGAACATCGTCAG CGGGATAAGGTCTTCATGTCTGGAGTGAGGTGAAAAATACCGGCGTGATGCCGGTATTTT TATAGTGAAATGAGGTTTCAGGTGCGTATATTCGCGGTGAGCATAATGGTGATTACCCTG AGCGGCTGCGGCAGTATTATCAGCAGAACGATCCCCGGACAAGGACACGGCAACCAGTAT TACCCTGGCGTGCAGTTGGATATGCGTGATTCCGCATGGCGCTATATCACTATCCTCGAT CTGCCCTTCTCACTGATCTTCGATACACTGCTACTGCCGCTCGATATTCACCACGGGCCT TATGAGTAATTAACGCTCATCCCATTCGTCTGCCGCAGTACGGCCTTCCTCGGTATCAAG CGGGGGTTCAAGCTGGTATTCCCCTTCATCCCATTCATGCAAAGTATTCTCTTCCTGCCA TTCCTGGCGGATCTCTTTCTCATCATAATCGCCGTCAAACACGCTCTGTGCGGCTTCACC ACTCAGCATCGGCAGATATTCGCCATCTTCACCTTCATCGGCGAAAAATTCGACCTGCCA CATGATGTCCCCATCCTGCAGTACATATTTCTGAACGTTGAACTGCTGCACATTCGCTTC GTCTTGTTCGAGGCCTTGATGGTCAGCCAGAAATTCTTCCCGGGCTGCATCGATAGCTTC TTCCAGCGTGGCATACTTGGTCATCAGTGTCTCCCTTTGATTTGACGAGGTATTTAGGGA AAGAATAGCTGATTCTTTGATATTGCAAGTATGAAAGCGCAAAAATCATTCTATTGCCAG TCTGCGCCGTCGTAAGTTGTTCCATGAATAGATAGCATTGAACAACACCACGCCTGCCGT GACGCAGAATACGGCGTGGAAGCCATAGCTCGCGGAAATTGCGGCACCCATGAGAGGGCC GGTGACGTTGCCGATATCGCGGAAAGATTGGTTGTAACTGAATATGCGCCCGGCTATCTG GTTGGTAGAGTTGTAATCCAGCAGAGTTTGAACGGCTGGCAGCAGCGCGCCATCCGCCGC GCCAAGCAGAAACCGCTATAGCGCGAGCTGCCACGGCGTTTGCACAAAAGACATTGGAAT CAGCAGCAGTACGGAATTAATCAGCGCGACGATAAGGATCTTTTCCGGGCCAATTCTGTC GCCGAGCTTGCCGAGCTGGGGGGCGCTAAGTAATGCCGCCACGCCGGGAACGGACGCTAT CATCCCGCTAATGAACTCAATATTACTGACATTTCCCGCGAGTTCGCGCACATAGAGCGT CAGGATGGGCGCAATATACCCCGTCGCCACCTGAATAATCAGCGTGGTGACAAACAGGCT TAACACCAGGCGGGGATTTTTTAACGAGGCGACCACTTCCCGAACGTGAAGCATCTCTTT TTTGCTCACCGGCAGGTAATTCTCGCGAATAAAAAAGAAGGTGAGCAGAAAACAGATAAA CAAAACGCTGGCGGTATTAAAAAAGACCGGGCGAAGGCCGTAATGGTCGGCGAGCAGACC GCCCGCAAGTGGGCCATGCAGAGCGCCGCTGACGCCGCCAGTAGAGAGCGTCCCTAACGC CCAGCCGCTTTTGTGGTGCGGCACCTGAGTGGCGATGAGCGCATTGGCGTTGGGAATAAA TCCGCCCAGCAGGCCTTATAACGCGCGGAGGATCAGAAATTGCCAGATATTTTGCGCCAT GCCCATTAACAGCATCTCAATGGCCATGCCGAGAGCGGAACGCAACAGTATGATCTTACG CCCTTTACGATCCGCCTGACCGCCCCAAAAAGGGGAAGCGATAGCTGAAAAGAGGAACGT AATACTAAAGACCAGCTCGGACCACATGTTGAGCGCGCTATGGCCTGTTACGCCGAGTTG CTCAACGTAGAGAGGGTGAAAAGGCATGACCAGACTGAATGCCGCGCCGGTTAAAAAACA GCCCAGCCAGGTAACGTTTAGATTGCGTTTCCAGTTTATGGGGACATCAGAGGGTGACAT AGTGTTCCACAGTATGTTGCGCGTTTTGCGCTATCATCAATTTAATTATGAGCGTACTAA TTATAATTATGCGCCGTCCTTACCAGCCTCGCAATGTGGGGAGCTTTTAAAGCTAAAAGA GGGGAAAAATTGCAGCTTGACGGCTGCAATCCTGTCAATAGCGCGACGGTACGCCTTCAG GGCGAGTTTTAAAGCGTCGATGCAGCCACATATACTGCTCTGGCGCCATCATAATGCACT GCTCAACAATCTTATTTATCCATGCGGCAGTCGCTTCTGCGCTCTCCAGCGGAGGCGAAT ATTCCGCAGGAAGGATTATCAGTTCGTAGCCTTTCCCGTCGGGTTTACGGCGAGGCACGG AGGGGATAATACAGGCTTTAGACATGCGCGCGAGCATCCAGGTACCGGAGGTCGTAGCGG CCTGGTCGACGGCGAATAACGGTACAAAGACGCTGGCGCGCGGGCCATAATCGTGATCCG GCGCATACCAGATCAATTCGCCGCTTTTCAATGCCTTAACCATACCTTTCAGATCTTTGC GATCCAACATCGATTTTTTGGAGCGTAAGCGCCCCCAGGTCTGTAACCAGTCGAGCAACG GATTATCATTCGGGCGTTAAACGCCGATACCCGGGTTATGCATACCAAACATGCGGGCGC CAAACTCAAGGGTAAGTAAATGTATTCCTACCAGAATGAACCCCAGCCCCTGCGCCTTAA CTTCACGGATATGCTCTAGACCGCTCGCTTCCATCCAGCGGTTCACTCGCCGATCGGGCC AGAACCAGGCCATGCCTGTTTCCATCACGCCCATACCGACGGATTCAAAGTTTTTGACCA CCATGGTGTGGCGTTCTTGCGCGCTCATTTCCGGAAAGCATAATTCAAGGTTGCGATAGG CGATTTTCGCGCGGCGTTTCATTACGCGTCGCGCCAGGTGGCCCAATGCGCAACCCAATT TATAGATGACCGGGTATGGGAGTTGCACGACCAACCAAAGCGCGCCTATACCCAACCAGG TTAACCAATAGCGCGGTTGCAGTAAGGCCACGGAGAACTTAGGCAACTTCGTCATTTCTA TCCTGTCTTTCAACGATCAATTCTCCGTATTCTCGCATCTTTTTGCGTTGAGCAAAAATA TGTAGCAGGAGAGTGGTGATTAAATCGACAATTGTTGTTAATTATTTAGCGTAAAGCAGG AAATGTAGCGCAAAATTTGTGGATGTAAATTGGCGAGACTTGCCTTATCATGCCTGCCCA CTTTATTTTTTGCTGATTGCAGGATACGTACACCATGCCAGTGTTACACAACCGCATCTC TAATGACGAGCTGAAATCCAAAATGCTGGCGGAAAGCGAGCCGCGTACGACAATTTCTTT TTATAAATATTTCACTTTCGCCTCGCCGCAACAGACGCGGGACGCGTTGTATCAGGTGTT TACGGCGTTGGACGTTTTTGGTCGCGTTTACCTGGCGCATGAGGGCATCAATGCGCAAAT CAGCGTGCCGCAAAGCTAGGTTGAGACCTTTCGTCAACAGCTTTATACGTTCGACCCCGC GCTGGACGGGGTGCGTTTAAATATCGCGCTGGAGGATGACGGAAAGTCATTTTGGGTGCT GCGTATGAAAGTTCGCGACCGTATCGTCGCTGACGGTATTGACGATCCGAGTTTTGACGC CAGTAATGTCGGCGATTATCTGAAGGCGGCAGATGTGAATGCGATGCTGGACGATCCTGA CGCGGTCTTTATTGATATGCGCAACCACTATGAGTATGAAGTCGGCCATTTCGAAAATGC TCTGGAAATCCCGGCGGATACGTTTCGTGAACAGTTGCCAAAAGCGGTTGAAATGCTGCG GGAACATGCAGATAAAAAGATAGTGATGTACTGTACCGGCGGTATTCGTTGTGAGAAAGC CAGCGCCTGGATGAAACACAACGGTTTCAATAAAGTCTGGCATATTGAGGGTGGCATCAT TGAGTACGCCCGTCGCGCGCGCGAGCAGGGGCTTCCCGTTCGCTTTATCGGCAAAAACTT TGTATTTGATGAGCGAATGGGCGAGCGCATCTCGGATGAGGTTATCGCGCATTGCCATCA GTGCGGCGTGTCCTGCGATAGCCATACCAACTGCAAAAACGACGGTTGCCATCTGCTGTT TATCCAGTGTCCGCAGTGCGCCAGTAAATTTAACGGCTGCTGTAGTGAACAATGCTGTGA AGAGTTGGCCTTGCCGGAGGAAGAACAGCGCCGACGTCGCGCGGGTCGTGAGAACGGCAA CAAAATTTTTAATAAATCGCGGGGTCGGCTTAATAGCAAACTGAGCATTCCCGATCCGGC TGAGTAATATTTTGCCGGATAGCGGCGTAAAGGCTGCTATCCGGCATTTCGCCAGGCGTT ACTTCTGCTGAACGCCTTCTACTGAGATGATAAGCTCCACCTCTTGTGAGGCTGGGCCGA GATCGGTAGTTATATTGAAATCTTTCAGCTTAATTTTTCCTTCGGCCTCAAAGCCCGCGC GCTTACCGCCCCACGGATCGTCGCCCTGGCCCATCAGCTTCGCTTCCAGCGTCACCGGTT TAGTCACGCCATTGAGCGTCAGATTGCCGGTAATATCCAGTTCATCGCCCTCTTTTTTCA CGCTGGTAGAGGTGAAGGTTGCCTGCGGGAATTTCGCAACATTAAGAAACTCCGCGCTAC GCAGGTGTTTGTCACGTTCGGCATGGTTAGTGTCGACGCTATTGGTGTTAATGGTCACAT TCACTTTGTCTGCTGACGGATTTTTTTCGTCAAAAGTGAACGTGCCGTCGAAATCTTTAA AGGTGCCGTATAGCCAGCTGTAGCCCAGATGCTGGATGCGGAAATTGACGAACGCATGTT GGCCTTCTTTATCAATTTTATACTCCGCCGCCACGGCGGAACCGGTCGTGAATAACAAGG ATGCGAGGGTGAATCCCAGCAGGTTTTTTTTCATTTTTGAGCTCCATAGTCAGATGACGA CATTCCTGTCATACGTTTCAGTGTGTCGTCTTTATCGATGAAATGGTGTTTTAGCGCCAT AACCCCATGCGAGAGCGAGATAATGACCAGCGACCAGGCAAACCACAGATGCAGTGTTCC GGCGATGTCAGCCTGCGCGCCCGCGTCCGTAAGCGTGGCCGGAATCTCAAACCAGCCAAA GACGCTAATCGGTTTACCGTCGGCGGTGGAAATCAGGTAGCCGCTAATGATTATCGCAAA GAGCAGGAGATACAGAAGGATATGACCCGCGGCGGCGCCAATGCGCGTTAAACGGGAATA GCTGGTCAACGCAACGGGCGGCGGAGAATAAAGCCGCCAGATAATACGCACGATCAGCGC CATCATCAGTAACATGCCAATACTTTTATGTATTTCCGGCGCCTAGTGATACCAGCCGTC GTAATAACTGAGCGTGACCATCCATAAACCCAACGCAAACATGCCATAGACCACTAGGGC GGTCAGCCAGTGGAGGGCGGCGGAAACTACGCCATAACGTTGTGGAGTATTTTTAAATTG CATAAACACACCAATGAATATTTCACGAGAGAATGAAAATGGCGTGGAAAAGCGCCGAAT GCAACTTATAAATAAGAATTTGAATGATATTTATTTTTATTTCAATAATTTTGATGTTGT TTGCGATTCAGCTTCAGAAGTTTCGAGATATTTCACTCCTGTAACCGCACAACGGCAGGA GTTGGCATTATTGCCGTGCTTCAACATTATGAAATAAAAAGTGAGGAACTTTCAGGAAGT GTTAGTTAACGTCAATGAAAAGCAATCAGAAGAAAAGGAGATAAACAATATCCATCACCG CCAGCAGCGACCAAAGAATAACGTAAAGCATGAAATGTTCGCGAATATTATTCATCAGAA AATGAAAGAGACGACGCATAGCTTACCTTAATAAACAGCCCCTTTACGGGGCCGACAAAT TATTGGCTAAAACGGGAAAGCCGGAACGGCGTCAGATCAAAGGAGGGCGTTTTTCCCAAC GCAAAATCCGCAGCGATTTCTCCTAACACCGGGGCGAATTTAAAACCATGTCCGCTGAGT CCAGTGATGACAAGCGTATTCTCATGGCCAGGCAGCGTATCGATAATAAAATCCTCGTCC GGCGAATTATCATAGGTACATGCCGCCCCATGTAAACAACCGCCGATACCCGGCAGTACG TTACGCAGGAAAGGAAATGCTTCCGCGCCATCGCTGGCAACGGCGGCAAAGGGCTTGCGC TCTTCCGGTGCCTGTATTCGCTGCCCGCCATTGTGTTTGCCGATTTTTAACTCGTCGTTC TCCGCCGGGAAACCGTAATAGTGATCGCCGTTGGGCATTTCGCCGGTAAAGGCCGGAAAG CGGTTTTTAGTGCTGTAACGTCCATCCGCCTTAAACCAGGCAAAAACTTTACGTACGGGC TGAACGGGCAGCTCCGGTACCAGCGTTTTGACCCAGGTGCCCGCGCTAATCAGCGCTTTG CTGGCGTGGTAGCAGCCTTCACTCGTCTCTATCGTCACACCGTTATCATCATGGTGAATA TGGCTTACCGGGCTGTTGAATAGCTGTGCGCAGCCTGCCTCTCGGGCCAGACGAAGCCAT GTGGTAATGGCTAATTCGCTGCGCAGGAAACCGGAGTCAGCTTCAAACAGCCCGATATAA TTATCGGGCACGCGAATTTCCGGCCAGCGCGTCATGAGGGCCGTCGCGTCCAGGCGCTCG ACGTTCAATTGCCACTGTTGCGCGCTTCGTGCGACGTTGGCTAAGAAAGCGGAATCGGCC GGGCCGAGGTTGACGACGCCGGAGCGGACAAAAATAGGCTCTTCATTGTGTGTGGAGAGC TCATCCCAAAGCGTCTGGGCGCGAAGCACCAGCGGGACATATTTTTCGCCTTCACCATAA GCGTGGCGGATAAGACGGGTATCGCCGTGGTGGCTGCCCTGTTGATAAGGCGGCATATGC GCATCGGTCATCAGGACCTTTAGCCCGGCGCGGGTGGCGTAATAACCAGCGGCGGCGCCA ACCGAACCGCTGCCGATAATAATAAGGTCGTATTTCATCAGCTTCTCTCTGCTATCGCGA TGATTTCAAGGTAAATAACTGCGCTGAGATATACAAGCCAGAAATAAGTGAGGCACCTTA CGGTGCCTGAGAGAGGGGGAGCGCGTCACGCTAATGGTGACGATACTCGTTTTCCTGGTA ATCGCCTGATTCTATTTTGGCGATGCCGGCTTCTAATATTGAAATAAATTGCCTGGCTAC ATCTGTCGTTAACCAGAGCGTTTGACCAACTTCAGTCCCTTCCGGTTCCGGACGATTTGG GGTCTGGTAGTGTAAACGCAGCATCAGCGCATCATAGCTATCGACGGTGCTGATGTCCCA TCCTACAAGCGGATGGGTCTGAATGACTTCATTATTCTTTTCCATCATGCCCCCCTGGTA CGTGTTATAAGACAACGGTTCTCGAGGTTCAATGCGTGTTTTTCTTCTGAAGCAACTTCA GTATACCAATTAATAAGGCTATTCACTGCGTTTTTAAAGAGACCGGAGGATAAATTTCTC TTTTTAAGAATTATATGAACAATAAAGCGGCAGTTCATTCATATTTTTTTAGGATGTTGT GCAATTATTTTGACGGTCAGGCGAAATATTCATCAGTTGCGCAAATAAAAAAGCCGGGGC GACCCGGCAAACATACATCACTGCATATCATTTTTTATTCATTGATGAACCAGTCATCAG CGCTCTCCCAGGTCTCCTGGAGAATCTCGCTAATGCGTTCTTTATCCTCTTTTGACGCGC CAATGACGGACAAGTTGTTGGCGGTAGCGTAACGCACGGTGACGTTACCCAAATTCTCAG GAAAATGATGGCTAATACGGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCAGCG CACCAATCGCACCGGCAGGCAGAGGTGACGTTTTGGCTATAGTGACTTCAATACGCATAA TGGCCCCCTGTTGAATATACTGGATATATATACAGTTAAATCCAATATATAGCAACAGGT AAGCGCATTTTTTATTTTTTTACTGACCAGCGTACTGTTTCACCCGCTAAAAAAGGCACC AGCGAATCATCAGCCAGCGCGATATTTTNNGGTATCTGTTGTTCATCGCGAACCAGTTCC ACCCACCCCGTATTCACCGGCAGGCCATNNAATTGCGGGCCATTCAGTGAACAGAACGCT TCAAAGTGCGCCAGCGCGTTCATTTCCTNNAACACGGCGGCATAACTGCCAAGAGCGGAG GGGGCGTTGAAACAACCGGCGCAGCCGCNNCGGGTCTCTTTACGATGACGTGAATGCGGC GCTGAATCCGTCCCCAGGAAGGCGCGCGNNAAACCACTGGCGACCAGGTCGCGTAACGCC TGCTGGTGAATATTGCGTTTCAGAATCGNNAGACAGTACAGGTGAGGACGAATGCCGCCA ACCAGCATATCATTACGGTTAAACATTANNTGTTGAGGCGTAATGGTCGCCGCCAGGTTG TAGCTGCCGTCACGTACATACTGCGCGGNNTCTTTGGTTGTGATGTGTTCAAAGACCACT TTAAGCGCGGTCAGACGCTGGCGTAGCGNNTCCATTACGGTGTCGATAAAACGCGCTTCG CGATCGAAGATATCAACATCCGCATGGGNNACCTCACCGTGGACCAGCAATGGCATTCCG AGTTTTTCCATCCGCTCCAGTACCGGCANNATAGCGTCGACTGACGTTACGCCATGACTG GAGTTAGTGGTGGCATTGGCCGGGTAAANNTTGGCCGCAGTAAACACGCCTTCATGGAAA CCACGCTCCAGTTCATCGGCATCGAGCGNNTCCGTTAAATAGCAGGTCATTAACGGCGTG AAATCATGCCCGGCGGGCACCGCATCGANNATACGCTGGCGGTAGGCGATCGCTGCATCA ACGGTCGTAATGGGGGACGCCAGGTTCGNNATCACGATAGCGCGACCATAAATTTCGCTG GTATAGGGTACGACCGTTTTTAACATGTNNCCATCGCGAAGGTGAACGTGCCAGTCGTCC GGGCGGCGGATCTTTAAAACCTGGGATGNNGCAGTCATTAATAAGCTCCGGCTGAGGAAT AGTCTTTTTGCCGGAAACAAAGGATAAGNNGAAACGTTTTCGTTTGCACGTAAAAAAAGG GCGCGAGCGCGCCCTCCGAAATCAATTGNNGAAAGGAATAACGATTTCACCAGGTTTAAC TTCAATGCCTTTCGCGAGTTTCTTCGCTNNCGCTTCGCCTTTACTACTGTCCTCACGCAA CACGTAAGCGGGCCGCTGGTTAAAGTAGNNACGTAAAGACTGATTTAAATAGGGCAGGAG CGTTTGTAGCACTGATTGCATTTTCTCCNNCGTCACGGTGGCGTCTACTACTTCCATCTC CTGAAGATAGATGGCGCCTTTTTCTTTANNAAAGACCGGCAGGGCTTTTAGCTTGAGTTT CATCGTCGCTTTTTGACTGCCAAACAGGNNATTCATATCCAGCCTGGCATCGCCAGTAAG GGTGACTTTATTAGGCTCTTCCCGACCANNCTGGCTGGCAAGGTTAGTCAATACGATATG CGCGTCGGCAATGCCAGGCAGACCAATANNTTTTGAGAAATTATTCCGTTTTTCAAGCGC TTGATTGATTTCTTGTTCGCTAATGGTGNNTTGCGTAAGTTGATTACAACCCACTAACAG GCCGCTAACTACCAGCGCAGCGGCAAAANNAACTTTTTCATGGCGTTCCTTAGCATGTTG CCTGTGCCCTAATCTTGACACAAAGCAGNNTGTCGCGCCAGCGGACATGGCGCCACTAAA AAAAGCTGAAAAAGGCGGCAAGAAAGGGNNGCCGCCTGGCGGGCGTTAGATAGCCATTGA GGAGAGTAAATTAATTTGCGTCTGCTTANNCATATTATCGCGATAGTCCGCGACTTTTGT CGGCCAGTGAATACCGGCGACCAGCGTCNNATTACGCAGAAGCGGAAACAGATGAATATC ATCTTCCGATAATTCGCCGTTAACGGCGNNAGGCTGTACGATGAGTTTATCCAGCAAACG TAAATCATCGCCGATCTTTTTAATCAGTNNGGCAGAGTGCGCAAGATGGTTGTCAAAACT GCCAGATGAGGCCTCTTTTTTGCGGATANNATACTGGCGCGCCGCAGGGGTAGAAAATTC ATCGAAAGCGGATTTTGCAAATCGCGGCNNCAGTAGCTGATTAACGTAACCGTTAACTTT GCGCAACCACTCTTCAATGGCTGGATTANNTTTCCCGGTTAACAGCGGTTTGCCGTCGAG GTTGTCGACATAATGTACAATATCCATANNTTCAGGAAGGTAGCGACTATCATCTTTTTG CAGGATGGGCACCATCTTTTGACCAATCNNCCGGGTGGGCGTCGCCTCGTCGTCATTTTG TAACACGTTAAGTTCAACGGGGATGTTCNNCAGGCCGAAAATCATGCGGGCTTTAACGCA GAAAGGGCAATGATCGTAAATATAAAGCNNCACGTTTCTCCTCCATTTGACTGTCGGTTC CTGACCAGTATGGAGGAGATAGCGACAGNNATCAAATCAGGCGCCGGGTTCCAGCATCCG GCGCGGCGTGCGCTTATGACTAAATTGCNNGCCTAAAGCCAAAAAGGTGATAAAGCCGAT AATACCGAGCATCATCCACGGTAGTTCANNCTGCGCAAGCGCTTTACCCATATCAAACAA CCAGCCGCCGCCGATATAACTAATCGCGNNGCCAATGGCTAATCCCAGACGGCTAAAGCC CATATAGCTTCCCCGCGCCCTCGCGTCCNNGGGCGACGCGCTGAGCGTTTCGCGCGCCGG TTCGGCGATAACCGAGCCGATGTAGAAANNGCAAATAAGCGTAAAAAGCTGCTGTAAATT GCCCACCATCCCGATGGGGAGCATGCTCNNCGACATGACGAGCAAACCGGCCATCAGCCG ATGCTCCAGCCGAAAACGCTTTTCGCTCNNGCGGGCAATCGGGTAGAGCAACGTCAGCGA GAGACACGCCTCAATAGCGTACATCCATNNCACGGCAGCAGGCGAACCGGCGATATCGTT TACCATAATCGGCAGCATTAACATGACCNNTACCGCCAGCATATAGTAGCCCGCCAGCGT CAGCACGTAGGTGACAAACCTTTTATTGNNCATGACGCGGCGCATTCCTTCACGCACCGG CGTTCTGGCCGTTGATAGCTTCCAGGCCNNAAGCAGCCATGCGTTGAAAAGGGCGCATAA TATGAACAAAATAGCGCCCGTCGCGCAGNNCAGGCGAAAATCGTATTGTAGCAACCAGCT TCCCAGCAGCGCGCCAATCACCGCGCCCNNGCTGTCCTGCATCATCAACAGAGAGAAGAA GCGGCCCCGTTGCTCCGGACGAATTAATNNGACCACCAGCGCTGAACGCGGCGGGTCGAA AAGCGTACCGCCGAGACCGGAAAGAAAGNNGGAAAACCACAAGAGCCAGGGCTCATGCGC GATACCCATGGTGGCAAAGCCTGCGGCGNNCATCAGCATACCGGTGACAATCATCGGTTT CGCGCCAAAGCGATCGGCGATGGCGCCGNNAAAAATGCCCAGACCTTGTTGAATAAACTG ACGCAGGCCGAGCGCGATCCCTACCATTNNGGCAGCCCACCCCATTTGATCGACAAAGCG AATAGAGATGAGCGGGAAGACGACGAAANNACCCAGCACCACTAACATGTTATCGATGAG AAGAAAATATTTACCCAGGTTCCTCGCCNNCGAGACGCGCGACATTTCCCCTCCCGGGAA ATAAAAGATGAGCGTCTTCTATTCTGCGNNGGCGTTTCGTTTTTTCCTACCGTTAGCGGG ACAATATTTTTTTATCAAAAGTCCTTTTNNATCGAGAGTTTTCATCAAAATGTGGCAGCA ATTCAAAAAATGACGATTTGCGCTTTTCNNAGGGCCTGGTTGCGCAGGTATAGTAATGTT ACTGGCGTGCTGAAGACGTTACAGGAAGNNGTAGGTATAGAATGTTTGGCTATCGCAGTA ACGTGCCAAAAGTGCGCTTAACCACCGANNGTCTGGTGGTACGTTTAGTGCATGAGCGTG ATGCCTGGCGTCTGGCCGATTATTACGCNNAAAATCGTCATTTTTTAAAACCCTGGGAAC CGGTCCGTGATGAAAGTCATTGTTATCCNNCAGGATGGCAGGCGCGTCTGGGAATGATCG GTGAATTTCACAAACAGGGCTCCGCCTTNNATTTCGCGCTACTTGATCCGGAAGAAAAAG AAATTATCGGCGTGGCGAATTTTTCCAANNTGGTGCGCGGTTCTTTTCATGCCTGTTATC TGGGCTATTCCATTGCGCAAGAGTGGCANNGGCAAGGGCTGATGTTTGAAGCCTTAACCG CTGCGATTCGCTATATGCAGCGCACTCANNATATCCACCGTATCATGGCGAACTATATGC CGCACAACAAACGTAGCGGCGCGTTGCTNNCGCGGCTTGGCTTTGAAAAAGAAGGCTATG CGAAAGATTACCTGTTGATTGATGGACANNGGCGCGACCATGTCCTGACGGCGTTAACCA CGCCGTTATGGACGCCGGGGCGTTGAGCNNCTTACGGAATGAGAGGCAAAGGGAGAAAAC GATGAAATATGAATTAACCGCCACTGAANNGCGAGTGATTGGCTGTCTGCTGGAAAAGCA GGTGACAACGCCGGAACAGTATCCGCTTNNCGTCAACGGGGTGGTGACAGCCTGTAATCA GAAAACCAACCGTGAACCGGTGATGAACNNGACGGAACAAGAGGTACAAGAACAGCTCGA TAACCTGGTGAAACGCCACTTTTTGCGTNNGGTCAGCGGGTTTGGCAACCGCGTCACCAA ATATGAACAGCGCTTCTGTAATTCCGAANNTGGCGATCTGAAACTTAGCGCGGCGGAAGT GGCGCTCGTCACTACGTTGCTGCTGCGCNNCGCGCAAACGCCCGGCGAGTTGCGTAGCCG GGCGTCGCGGATGCATGAATTCAGCGATNNGGCGGAAGTTGAATCCACGCTGGAACGGCT TGCCAGTCGTGAGGACGGCCCGTATGTCNNCCGTCTGGCGCGTGAACCGGGTAAGCGCGA AAGCCGCTATATGCACCTTTTTTGCGGCNNCGTCGATGAACTGTCTCTCCAGACGTCTGC GCCGGAAAGTGCGTCGGGCGATCTTCAGNNGCGCGTCGAAGCGCTGGAAAGCGAAGTGGC GGAGTTAAAGCAGCGGCTGGATTCTTTGNNAGCTCACCTGGGAGAGTAATGTGAGAACAT TACGGATTGGCATTGTCGTGTTAGGTGGNNTTGCGCAGAAGGCCTGGCTGCCGGTATTAA CCAACACCGCCGGATGGACGTTACAGGGNNCCTGGTCTCCTTCGCGGGATAAAGCCTTAC GTATTTGCGAAAGCTGGCGCATACCGTANNTGGATTCGCTGGCGAATTTAGCGTCCGGCT GCGATGCGGTCTTCGTCCACTCCAGTACNNCAAGCCATTATGCCGTGGTCAGCGAACTTC TCAACGCTGGCGTCCATGTCTGCGTGGANNAACCGCTGGCGGAAAATCTACGTGATGCCG AACGGCTGGTGGCGCTGGCGGCGCAAAANNAATTGACGCTGATGGTTGGCTTTAATCGCC GTTTCGCGCCGCTGTACCGCGAACTGAANNCGCGCCTCGGCACTGCGGCGTCACTGCGTA TGGATAAACATCGTACCGATAGCATCGGNNCGCATGACTTACGTTTTACTTTGCTCGATG ACTATCTGCATGTCGTGGATACCGTTCTNNGGCTGGCGGGCGGCGAGGCGCGCCTTGCCA GCGGCACGTTGCTCACCAGCGAGTCCGGNNAAATGTGCTATGCGGAACATCATTTTTCCG CCGACAAATTACAAATTACCACCAGTATNNACCGGCGCGCCGGAAGTCAGCGTGAATCGG TCCAGGCCGTCACCGATGGCGGGCTGTANNACGTGACGGATATGCGTGAATGGCGCGAAG AGCGCGGGCAGGGTATTCTCATCAAACCNNTTCCGGGTTGGCAAACAACGCTTGAGCAGC GTGGTTTTGTCGGATGCGCGCGGCATTTNNTTGACTGCGTACAAAATCAGACGGTTCCGG AAACGGCGGGGGAGCAGGCGATTTTGGCNNAGCGCGTCGTGGAGGCGCTGTGGCGGGACG CCATCAGCGAATAATCCTCTGTAACATCNNGCGGTAGTAATTCATCGTAATCCAGGTACT ATACCCTCAATAATTCGAGTTGCAGAAANNCTAACGCACATGCAGCTCGAAGTATGGCGG GTATATATGCCCACTCTACATAATACCTNNTTTCACAGTGAATAATGGCAAACCGTGGGG AGTCTGTAAGGCCTGATAAGACGTTTTGNNGTCGCCGTCAGGCGCAGTGATACAGCCGGA TACGGCAGAAGTTGCGTTATCCGGTCGANNGATCAGCCATGCAGGAGTTTTACGCCAGGG TCTGGAATACAAAAGAAATGAATTTATTNNAATCGCTGGCTGCCGTCAGCTCGATGACTA TGTTTTCACGCGTGTTGGGCTTTGCCCGNNATGCGATTGTCGCCAGAATTTTTGGCGCAG GGATGGCGACCGACGCCTTTTTTGTGGCNNTTAAACTTCCCAATCTACTACGCCGGATCT TTGCCGAAGGCGCTTTTTCTCAGGCCTTNNTGCCTATCCTGGCGGAATATAAGAGCAAGC AGGGTGAAGAAGCGACGCGGATCTTTGTNNCTTACGTTTCCGGCCTGTTGACGCTGGCAT TGGCCGTCGTGACGGTGGCCGGTATGCTNNCCGCCCCGTGGGTGATTATGGTAACCGCGC CGGGTTTTGCCGATACTGCGGATAAATTNNCGCTGACGACGCAACTGCTGCGGATTACGT TTCCCTATATTCTGCTGATCTCGCTGGCNNCACTGGTTGGCGCCATTCTCAACACCTGGA ATCGCTTCTCTATTCCCGCTTTTGCGCCNNCATTTCTTAATATCAGTATGATCGGTTTTG CATTATTCGCCGCGCCATACTTTAATCCNNCGGTGCTGGCGTTAGCCTGGGCAGTCACCG TCGGCGGCGTGCTGCAACTGGTGTATCANNTTCCGTATTTGAAAAAGATCGGTATGCTGG TGCTGCCGCGCATTAACTTTCACGACACNNGGGCGATGCGGGTGGTCAAACAGATGGGGC CGGCGATTTTGGGCGTTTCCGTCAGTCANNTCTCCCTTATCATCAATACCATTTTCGCCT CGTTTCTGGCCTCCGGCTCGGTCTCATGNNTGTACTATGCCGATCGGTTGATGGAGTTCC CGTCCGGCGTGCTGGGCGTGGCGTTGGGNNCCATCCTGTTGCCGTCATTGTCGAAAAGCT TTGCCAGCGGCAATCATGATGAGTACTGNNGCCTGATGGACTGGGGGCTGCGTTTGTGCT TTTTACTGGCGTTGCCGAGCGCGGTAGCNNTAGGCATTCTGGCGAAGCCGCTGACGGTCT CGCTGTTTCAGTACGGTAAATTCACCGCNNTTGATGCGGCGATGACGCAGCGGGCGTTAA TCGCCTATTCGGTGGGGCTGATTGGCTTNNTCGTCGTAAAAGTGCTGGCCCCGGGCTTCT ATTCTCGCCAGGATATTAAAACGCCGGTNNAAATCGCCATCGTGACGTTAATCATGACGC AGTTAATGAACCTGGCGTTTATTGGACCNNTGAAACACGCCGGGCTGTCGCTCTCTATTG GTCTGGCGGCATGTCTCAATGCGTCGCTNNTGTACTGGCAACTGCGCAAACAGAATATCT TTACGCCACAACCGGGGTGGATGTGGTTNNTGATGCGTCTGATCATTTCCGTACTGGTAA TGGCCGCCGTGTTGTTCGGCGTGTTGCANNTTATGCCGGAGTGGTCGCAAGGGTCGATGC TATGGCGTTTGCTGCGTTTGATGGCGGTNNTGATCGCGGGTATCGCGGCCTATTTCGCCG CGCTTGCCGTGCTGGGCTTTAAAGTGAANNAGTTTGTTCGCCGGACGGCGTAAATTCAGT GCCTGATAGCGCTGTGCTATCAGGCCTANNAGGCATTCAGGCCGGAAAGGCGCAACGTCG CCATCCGGCAATGATTAGATAGATATTTNNTTACCGCCGCGGTGAGAGACGGAAGTCTGA CCGTCAGCCCCGTACAAGGTCGGCTCCTNNTGAGGTTTCAGCACCTCCAGCGCCTGTTGA TTACGCTCGATTTGCCCTTCCAGCAGCCNNCCGTTGTGCTGGTTGAGGTCGCGCAGATGC TGCGTTTTTTCGGTAATCGCCTGCCAGCNNTCTGCAATGTCATCGTTTGCGCTACGCTGC GCGTTCTGCTCCAGACGGCGCTGTTGTTNNAGATAATCCAGCGTCGCCAGCAACGAGCTT TTTTCTTCTGTAATACGCTGTAGCTGGCNNCCGTTAATCTGGCCTACGGAAAGCTGTTGT TGCTCGGCGTCCATCACCGTCTTCAGGTNNTTCAGGACGGTGGTCATCTGGTCAAGTATT TCTGACAAACGAGTCATACGCTTATTTANNCTGTAAGTAGCTCTGCGCCTCGCGAATGAG CGAGTCTGCTATTTTTCCCGTATCCATTNNTAACTCACCGTTACGGATAGCCGTTTTTAA TGCTTCGACGCGTTCCATATTAATGTCGNNGACGCCTGGCTGCATAAGCTTCGCTTGCGC GTCGCTTAACGTTACGCTGGCGCTCGTCNNGGCGGACGTTTTTTCCTGACGCGTTTTTTG TACCGGCGTGTCGCTGGTTTCGCGCGTCNNGACAGTGCTAACGGGTTTCAAAGGTGAGGT ACGGTCAATGCTCATTTATTTATCCTCANNGAGGGTTACGTTGTAGCGGCCAGCTACCAT CATGGTTGAATATCTCATCGGCAGCCGCNNCAAAATCTTTACACAATTATAGGTTAATAA GAATATTCCCATCAGAATCGACGGTTCCNNTCACGATTTGACCCGATGTCATGCGCACGC GCGCATTTTGCGCGACGGCGGCATTATTNNTCGCCTGACCTTCCGCATTGACGCTAAACC CCTCGCCATTGGCGATGACCTGTACTCGNNGACCCGCTTTGACACGCCAGGCCTGACGTA TCATCGTAAGCTGTACCGGCTGCCCGGGNNCGAGATCGCGCAAACTGACGGCATCCTGAA TCTGACGGATATCCAGTACCGTCCGCGGNNGTAACTGATCCAGTCTGCCACGTTTTAGCG TGACGTTGGCCGGCGTCAATTTTCCGCCNNGCGCGACGGGCGCGGCTACGGCGACATAAT TGCCGGTCGCTTGCACATTCACCTGCAANNAACGTTTTTCATTGGCGCAGCGCGCCACCA CATTGACGTTGCCCCACAGCTTCGCGCTNNCCGTCATGCTGAAGGCTGGCTGCTCGCAGC TCGGTAGCAGATTGGGCGGTGAACGGAGNNTGACAACCACCTCGTCGCTGAAGCCAGCCA GACGCTGGGAAAACCACGTGGTCAGCTGNNCGTTGATGTCCTGCGCCATTGTCAGGGGGC TGAACAGCAAAGCCGCCACGGCGAATCCNNGTTTTAACGTTTGCATGGTACTTCCCCCTG GTTGATGTCATGACAGGATTCTACCCGTNNGAAGCAAGCATCAACGCAATAAATAGCGAC GCATTTTGCGTTTATTCCGGCGATAACGNNCGCGTGAAGGCATTTAAGCTGTCGGCTGAA TTTTGCCATTTGCGGAGGAGATATGCTCNNCAGGCTCGATGCCGCCTTACGATTTCAGCA GGAAGCGCTAAATCTGCGCGCGCAACGTNNGGAAATATTAGCGGCGAATATCGCCAATGC CGATACGCCGGGGTATCAGGCGCGCGATNNTGATTTTGCCAGTGAGTTAAAAAAAGTGAT GGTGCGCGGACGGGAAGAAACCGGCGGCNNCGCGTTGTCGTTGACTTCTTCTCGCCATAT TCCCGCCCAGGCGGTCTCTTCTCCCGCANNGGATCTGCTTTACCGCGTACCCGATCAGCC TTCTTTGGATGGTAACACCGTAGATATGNNCAGGGAACGTACGCAGTTTGCGGATAACAG TCTCAAATATCAGATGGGGCTTACCGTTNNGGGTAGCCAACTCAAAGGCATGATGAATGT GCTACAGGGAGGAAACTAATTCGTGGCGNNGTTAAACATTTTTGATATTGCCGGATCGGC GCTTGCCGCACAGTCCAAGCGGTTGAACNNTGCGGCCAGTAACCTTGCGAATGCGGATAG CGTCACCGGCCCGGACGGACAGCCTTATNNCGCCAAACAGGTGGTTTTTCAGGTGGACGC CGCGCCGGGTCAAGCCACTGGCGGGGTANNGGTCGCCAGCGTGATTGAAAGTCAGGCACC GGAAAAGCTGGTTTATGAGCCAGGCAATNNGCTGGCGGACGCTAATGGTTACGTCAAAAT GCCCAACGTCGATGTGGTCGGCGAAATGNNCAACACGATGTCAGCCTCGCGCAGCTATCA GGCAAATATCGAAGTCCTGAATACCGTANNAAGCATGATGCTTAAAACGCTGACATTAGG CCAGTAAAGGAGGCGCGTATGTCTATTGCCGTAAATATGAATGACCCGACCAACACGGGC GTCAAAACGACGACCGGCAGCGGGTCGATGACCGGAAGCAACGCTGCCGATCTGCAAAGC AGTTTCCTGACCTTACTGGTCGCGCAATTGAAGAACCAGGACCCGACTAACCCATTACAA AATAATGAGTTAACGACACAGTTGGCGCAAATCAGTACCGTGAGCGGCATTGAAAAACTG AATACGACGCTGGGGGCTATTTCCGGGCAAATCGATAATAGTCAGTCCCTACAGGCGACC ACGCTGATTGGACATGGCGTTATGGTGCCTGGCACCACAATTCTGGCGGGTAAAGGCGCG GAAGAAGGGGCCGTGACGTCCACGACGCCGTTTGGCGTGGAATTGCAACAGCCTGCGGAC AAAGTGACGGCAACCATTACCGATAAAGATGGCCGGGTGGTACGGACGCTGGAGATCGGT GAGTTGCGAGCCGGGGTACACACCTTTACCTGGGATGGTAAGCAAACGGACGGAACAACG GTACCGAATGGTTCTTACAACATTGCGATTACCGCCAGCAATGGCGGGACGCAACTGGTG GCGCAGCCGCTGCAATTCGCTCTGGTACAGGGCGTGACGAAGGGCAGTAACGGCAACCTG TTGGATCTGGGTACCTACGGCACCACCACACTCGACGAAGTTCGGCAAATAATCTAAGCC CTTACACTTATCAGGAGTCAGTCATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTG CGGCCACCAACCTTGATGTTATCGGTAATAACATCGCCAACTCCGCCACCTATGGCTTTA AGTCCGGTACGGCATCATTTGCCGATATGTTCGCCGGTTCCAAAGTGGGGTTGGGCGTAA AAGTGGCGGGGATTACCCAGGATTTTACCGACGGTACGACAACGAACACCGGGCGCGGGC TGGATGTCGCGATTAGCCAGAACGGTTTTTTCCGCCTGGTAGACAGCAACGGTTCCGTGT TCTATAGCCGCAACGGCCAGTTCAAACTGGACGAGAACCGTAACCTGGTCAATATGCAGG GGATGCAGTTGACCGGCTATCCGGCCACCGGTACGCCGCCGACCATTCAGCAGGGGGCGA ATCCTGCGCCGATCACCATTCCGAACACGCTGATGGCGGCGAAATCGACCACCACCGCGT CAATGCAGATCAACCTGAACTCAACGGACCCTGTACCGTCTAAAACGCCCTTTAGCGTGA GTGATGCGGATTCGTATAACAAAAAAGGCACCGTCACCGTTTATGACAGCCAGGGTAATG CCCATGACATGAACGTCTATTTTGTGAAAACCAAAGATAATGAATGGGCTGTGTACACCC ATGACAGCAGCGATCCTGCAGCCACTGCGCCAACAACGGCGTCCACTACGCTGAAATTCA ATGAAAACGGGATTCTGGAGTCTGGCGGTACGGTGAACATCACCACCGGTACGATTAATG GCGCGACAGCGGCCACCTTCTCCCTCAGCTTCCTTAACTCCATGCAGCAGAACACCGGGG CTAATAACATCGTCGCCACCAATCAAAACGGCTATAAGCCTGGCGACCTGGTGAGCTACC AGATTAACAATGATGGCACCGTGGTTGGCAACTACTCCAACGAGCAGGAGCAGGTGCTGG GGCAGATTGTGCTGGCTAACTTCGCCAACAACGAAGGTCTGGCATCCCAGGGCGATAACG TCTGGGCGGCGACGCAGGCCTCCGGGGTAGCGCTGCTGGGGACTGCCGGTTCCGGCAACT TCGGTAAGCTGACGAACGGCGCGCTGGAAGCCTCTAACGTGGATTTGAGTAAAGAGCTGG TGAATATGATCGTCGCGCAGCGTAACTACCAGTCGAATGCGCAGACCATCAAAACCCAGG ACCAGATCCTCAATACGCTGGTTAACCTGCGCTAAGCGCCTGACGGGATAGCTTAATGGA TCACGCAATTTATACCGCCATGGGGGCGGCCAGCCAGACGCTTAACCAGCAGGCGGTAAC GGCCAGCAACCTGGCTAATGCCTCAACGCCGGGCTTTCGCGCGCAGCTTAACGCGCTACG CGCGGTGCCCGTTGATGGCCTCTCTTTAGCGACGCGCACGTTGGTTACGGCGTCGACGCC GGGGGCGGATATGACCCAGGGTCAGTTGGACTACACTTCCCGCCCGCTGGATGTTGCGTT ACAGCAGGACGGCTGGCTGGTGGTGCAAGCGGCGGATGGCGCTGAAGGATATACCCGTAA CGGGAATATCCAGGTGGGCCCGACCGGGCAGTTAACCATTCAGGGACATCCGGTTATCGG CGAAGGCGGCCCGATTACCGTTCCGGAAGGGTCGGAAATCACCATTGCGGCAGACGGCAC GATCTCCGCGCTCAATCCCGGCGACCCGCCAAACACGGTGGCGCCCGTTGGGCGGCTGAA GCTGGTCAAAGCGGAAGGCAATGAGGTGCAGCGGAGCGATGACGGTTTATTCCGCCTTAC CGCCGAGGCACAGGCTGAACGCGGGGCGGTACTGGCCGCCGACCCGTCAATTCGCATTAT GTCGGGCGTGCTGGAGGGCAGTAACGTCAAGCCGGTTGAAGCCATGACCGACATGATCGC CAACGCACGTCGTTTTGAAATGCAGATGAAGGTTATCACCAGCGTAGATGAGAACGAAGG GCGAGCTAACCAACTGCTGTCGATGAGTTAATACAGGACATTTTATGATCAGTTCATTAT GGATCGCCAAAACCGGTCTGGACGCGCAGCAAACCAATATGGATGTGATTGCCAATAACC TGGCAAACGTCAGCACCAATGGTTTTAAGCGTCAGCGCGCGGTATTTGAAGATCTGTTGT ATCAGACCATCCGCCAGCCGGGCGCGCAGTCGTCCGAGCAGACGACGCTGCCTTCCGGGC TGCAAATCGGTACCGGCGTGCGTCCGGTCGCCACGGAGCGCCTGCACAGTCAGGGGAACC TGTCGCAGACCAACAACAGTAAAGATGTGGCGATTAAAGGGCAGGGCTTTTTCCAGGTCA TGCTGCCGGACGGTACGTCTGCCTATACCCGCGACGGCTCTTTCCAGGTGGATCAGAATG GTCAACTGGTGACGGCGGGCGGTTTTCAGGTGCAGCCGGCAATCACCATTCCGGCCAACG CGTTAAGCATCACGATTGGCCGCGACGGCGTGGTCAGCGTTACCCAGCAAGGGCAGGCCG CGCCGGTTCAGGTCGGGCAGCTTAACCTGACCACCTTTATGAACGACACCGGTCTGGAAA GCATCGGCGAGAACCTCTATATCGAAACGCAATCGTCCGGCGCGCCGAACGAAAGCACGC CGGGGCTCAACGGCGCGGGGTTGTTGTATCAAGGGTATGTCGAAACGTCGAACGTTAACG TGGCGGAAGAGCTGGTGAACATGATTCAGGTTCAACGCGCCTATGAAATTAACAGTAAAG CAGTATCGACGACCGATCAGATGCTGCAGAAACTGACGCAACTCTAAGGGGCCGCCGGTG GGGGATACGCCACCGGCTCCCTGATTTTGAAGATGAAGGTAATGCAAAAATACGCGCTTC ACGCTTACCCAGTTATGGCCCTGATGGTCGCGACGCTGACAGGATGCGCCTGGATACCCG CTAAACCGCTCGTGCAGGGGGCGACCACGGCGCAGCCGATACCTGGCCCGGTACCGGTGG CGAATGGCTCCATATTTCAGTCTGCGCAGCCGATTAATTATGGCTATCAGCCGCTTTTTG AAGATCGTCGACCGCGTAATATCGGCGATACGCTCACGATTGTGTTACAGGAAAACGTCA GCGCCAGTAAAAGCTCGTCGGCAAATGCCAGCCGCGACGGCAAAACCAGCTTTGGTTTTG ATACGGTACCGCGTTATCTGCAGGGATTATTCGGTAATTCCCGCGCGGATATGGAGGCCT CCGGCGGCAACTCTTTTAATGGTAAAGGCGGCGCGAATGCCAGCAATACCTTTAGCGGCA CGCTGACCGTGACCGTCGATCAGGTTCTGGCCAATGGCAATTTACACGTCGTGGGGGAAA AACAGATCGCGATTAATCAGGGAACGGAATTCATCCGCTTCTCCGGCGTGGTAAATCCAC GCACCATCAGCGGTAGCAACTCTGTTCCCTCGACACAGGTGGCGGATGCGCGGATTGAAT ATGTCGGGAACGGCTATATTAACGAAGCGCAAAATATGGGCTGGCTGCAACGTTTCTTCC TTAATTTGTCGCCGATGTAAGCGAGGTGTATGTGTTTAAAGCTCTTGCAGGAATCGTTCT GGCACTGGTTGCCACTCTGGCGCACGCCGAGCGTATCCGGGATCTGACCAGTGTCCAGGG AGTACGGGAAAACTCGCTGATCGGCTACGGGCTGGTGGTCGGGCTGGACGGTACGGGCGA CCAGACGACCCAGACGCCATTTACCACCCAGACGCTGAATAACATGCTGTCACAACTGGG GATTACGGTCCCCACCGGCACCAATATGCAGTTGAAAAACGTGGCGGCGGTGATGGTGAC GGCGTCGTATCCGCCTTTTGCGCGACAGGGACAAACGATCGATGTCGTCGTTTCCTCAAT GGGGAACGCTAAAAGTCTGCGTGGCGGGACGTTATTAATGACGCCGTTAAAAGGGGTGGA CAGCCAGGTGTATGCTCTGGCGCAGGGCAATATTCTGGTCGGCGGCGCGGGCGCTTCCGC AGGCGGCAGTAGCGTGCAGGTTAACCAGCTTAATGGCGGGCGCATCACTAATGGCGCGAT TATCGAACGCGAGTTGCCGACTCAGTTCGGCGCTGGCAACACCATTAATCTGCAATTGAA CGACGAAGATTTTACGATGGCGCAGCAAATTACCGACGCCATCAACCGCGCCCGCGGTTA CGGCAGCGCCACTGCGCTTGATGCGCGAACGGTACAGGTACGCGTGCCCAGCGGCAACAG CTCGCAGGTGCGTTTTCTGGCGGACATTCAAAATATGGAAGTCAACGTGACGCCGCAGGA TGCAAAAGTCGTGATCAACTCGCGTACCGGTTCGGTGGTCATGAATCGGGAAGTCACGCT GGATAGCTGCGCTGTGGCGCAGGGCAATTTGTCAGTGACAGTCAATCGCCAACTCAACGT CAACCAGCCGAATACGCCATTTGGCGGCGGGCAGACCGTGGTGACGCCACAGACTCAGAT AGATTTGCGTCAGAGCGGCGGATCGCTACAGAGCGTGCGTTCCAGCGCCAATCTGAACAG CGTAGTGCGCGCGCTGAATGCGCTTGGCGCGACGCCGATGGATCTGATGTCGATTTTGCA GTCCATGCAGAGCGCGGGCTGTCTACGCGCCAAACTGGAAATCATCTGATGATCGGAGAC GGTAAATTGCTGGCCAGCGCGGCCTGGGATGCGCAATCTCTGAACGAACTGAAAGCGAAA GCGGGCCAGGACCCGGCGGCGAATATCCGTCCTGTGGCCCGTCAGGTGGAAGGGATGTTT GTGCAGATGATGCTGAAAAGTATGCGCGAGGCTTTACCCAAAGATGGTTTATTCAGCAGC GATCAGACGCGTCTGTATACCAGCATGTATGACCAGCAGATCGCCCAGCAGATGACCGCC GGTAAGGGATTGGGGCTGGCGGATATGATGGTTAAACAGATGACGGGCGGGCAGACGATG CCTGCAGATGATGCGCCGCAAGTACCGCTTAAATTCTCCCTGGAGACGGTAAACAGCTAT CAAAATCAGGCGCTGACCCAACTGGTGCGCAAAGCCATACCGAAAACGCCGGACAGCAGC GATGCGCCGCTCTCCGGCGACAGTAAAGACTTTCTGGCCCGGCTTTCGCTCCCGGCGAGG CTGGCCAGCGAACAAAGCGGGGTGCCGCATCATCTGATTCTGGCGCAGGCGGCGCTGGAG TCCGGCTGGGGGCAGCGGCAAATCCTGCGGGAGAATGGCGAACCCAGCTATAACGTATTT GGCGTGAAAGCGACCGCCAGTTGGAAAGGGCCGGTGACGGAAATCACCACCACTGAATAC GAAAATGGCGAAGCGAAAAAAGTGAAAGCGAAATTCCGCGTCTATAGCTCGTATCTGGAG GCGTTATCGGATTATGTCGCGCTGTTAACGCGTAACCCACGCTACGCTGCCGTGACCACT GCCGCCACGGCAGAGCAGGGCGCAGTGGCTCTGCAAAACGCCGGATACGCCACTGACCCG AATTACGCGCGTAAATTGGCCAGCATGATTCAGCAGTTGAAAGCGATGAGTGAAAAGGTC AGCAAAACCTACAGCGCGAATCTCGACAATCTCTTTTAAATTGCTCAAGTCCACGTAGTC GCTGCCGATAACAACGAGTATTGAAGGATTAAAAGGAACCATCATGTCCAGCTTGATTAA TCACGCCATGAGCGGACTTAACGCCGCGCAGGCCGCGTTAAATACGGTCAGTAATAACAT CAACAATTATAACGTTGCGGGTTATACCCGGCAGACAACTATTCTGGCGCAGGCAAACAG TACGTTAGGGGCTGGCGGCTGGATAGGTAATGGCGTTTACGTTTCAGGCGTACAGCGCGA ATATGATGCGTTTATCACTAATCAGCTACGCGGCGCGCAAAACCAGAGCAGCGGCTTAAC CACGCGCTATGAACAAATGTCGAAAATCGACAACCTGCTGGCCGATAAATCCAGCTCACT GTCTGGCTCGCTGCAGAGTTTTTTTACCAGCCTGCAAACGTTAGTCAGTAATGCGGAAGA TCCTGCGGCGCGTCAGGCGCTGATTGGTAAAGCGGAAGGGCTGGTAAACCAGTTCAAAAC CACCGATCAGTATCTGCGCGATCAGGATAAACAGGTCAATATCGCGATTGGCTCCAGCGT GGCGCAAATCAACAATTACGCGAAGCAGATAGCTAACCTGAACGATCAAATCTCCCGTAT GACGGGCGTAGGCGCGGGCGCATCGCCGAACGACCTGCTCGATCAACGTGATCAGTTGGT TAGCGAGCTTAACAAGATCGTTGGCGTCGAGGTGAGTGTACAGGACGGCGGCACCTATAA CCTGACGATGGCCAATGGCTATACGCTGGTGCAGGGGTCGACGGCGCGTCAGTTGGCGGC GGTTCCCTCCAGCGCCGACCCGACGCGAACGACTGTCGCTTATGTCGATGAGGCCGCCGG TAACATCGAAATTCCGGAAAAGTTGCTGAACACCGGTTCGCTCGGCGGGCTACTGACGTT CCGTTCTCAGGATCTGGATCAGACTCGTAATACGCTGGGCCAGTTGGCGTTGGCGTTTGC CGATGCGTTTAACGCGCAGCATACCAAAGGTTATGACGCCGACGGCAATAAAGGGAAAGA CTTCTTTAGCATTGGCTCGCCGGTGGTATATAGCAACAGTAATAATGCCGATAAAACGGT ATCGCTAACCGCTAAGGTGGTCGACAGCACGAAGGTTCAGGCGACGGATTATAAGATTGT TTTTGACGGTACAGACTGGCAGGTTACTCGCACTGCGGATAACACCACCTTCACGGCAAC AAAAGATGCTGACGGAAAACTGGAGATTGACGGTCTGAAAGTGACGGTAGGGACTGGCGC ACAGAAAAACGACAGTTTTCTTCTCAAGCCGGTCAGCAATGCTATCGTCGACATGAACGT TAAAGTGACAAATGAAGCCGAGATTGCGATGGCGTCTGAGTCAAAACTCGATCCTGATGT GGATACCGGCGACAGCGATAACCGCAATGGTCAGGCATTGCTGGACTTACAAAACAGCAA TGTAGTGGGCGGCAACAAAACCTTTAACGATGCTTACGCCACGTTGGTCAGCGATGTGGG TAACAAAACGTCAACGCTGAAAACCAGCAGCACCACGCAGGCGAATGTGGTTAAACAGCT TTATAAACAGCAACAGTCGGTTTCCGGCGTTAACCTCGACGAAGAGTACGGCAATTTGCA GCGTTATCAGCAGTATTATCTGGCGAATGCGCAAGTATTGCAGACCGCGAATGCGCTGTT TGATGCGTTATTGAATATTCGCTAAAGGAGAAGGATGACATGCGTATCAGTACCCAGATG ATGTACGAACAAAATATGAGCGGCATCACTAATTCTCAGGCCGAATGGATGAAGCTGGGC GAGCAGATGTCTACCGGTAAGCGCGTTACCAACCCATCTGACGATCCGATCGCCGCGTCG CAGGCGGTAGTACTCTTTCAGGCGCAGGCGCAGAATAGCCAGTACGCCCTGGCGCGTACG TTTGCCACCCAAAAAGTGTCGCTGGAAGAAAGCGTACTCAGTCAGGTGACGACGGCGATT CAAACCGCGCAGGAAAAAATCGTCTATGCCGGAAACGGCACGTTAAGCGACGATGACCGC GCGTCGCTGGCGACGGATTTACAGGGGATCCGCGATCAGCTGATGAACCTGGCAAACAGC ACTGACGGCAATGGTCGCTATATCTTTGCCGGGTATAAAACGGAAGCGGCGCCATTCGAC CAGGCGACAGGTGGTTATCATGGCGGCGAGAAAAGTGTTACCCAGCAGGTGGATTCCGCA CGCACGATGGTAATTGGCCATACGGGAGCGCAAATTTTTAATAGCATCACCAGCAATGCG GTGCCGGAACCGGATGGCTCGGACTCCGAAAAGAATCTGTTTGTCATGCTCGATACGGCA ATTGCCGCGCTCAAGACCCCGGTGGAAGGCAATGACGTGGAAAAAGAAAAAGCCGCTGCC GCCATTGATAAAACCAATCGCGGCTTAAAAAATTCGCTTAATAACGTCCTGACCGTTCGT GCGGAACTGGGAACGCAACTGAGCGAACTCAGTACGCTGGATTCACTGGGAAGCGACCGT GCGCTGGGACAGAAGCTACAGATGAGCAACCTGGTAGATGTGGACTGGAACTCGGTCATT TCCTCCTACGTCATGCAACAGGCGGCATTACAGGCGTCCTATAAAACGTTTACCGACATG CAGGGAATGTCGCTTTTCCAGTTGAACCGGTAACGCCTCTTTTTGAAACATATCACGAAA CTGGATATGTTTTGTCTGCCCGCGCCATCCACCCCGGCGCGGGCATTTTTTGTCTATGGA AAACCCCCAGCTAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTAAGCCAGTTATTAAAAC CCCTTTTGATTTGTTAAAACATCTTGCGGTCTGGCRoary-3.8.0/t/data/real_data_core_gene_alignment.aln000066400000000000000000003477361304207556500225010ustar00rootroot00000000000000>11111_1#11 ATGCGTATCAGTACCCAGATGATGTACGAACAAAATATGAGCGGCATCACTAATTCTCAG GCCGAATGGATGAAGCTGGGCGAGCAGATGTCTACCGGTAAGCGCGTTACCAACCCATCT GACGATCCGATCGCCGCGTCGCAGGCGGTAGTACTCTTTCAGGCGCAGGCGCAGAATAGC CAGTACGCCCTGGCGCGTACGTTTGCCACCCAAAAAGTGTCGCTGGAAGAAAGCGTACTC AGTCAGGTGACGACGGCGATTCAAACCGCGCAGGAAAAAATCGTCTATGCCGGAAACGGC ACGTTAAGCGACGATGACCGCGCGTCGCTGGCGACGGATTTACAGGGGATCCGCGATCAG CTGATGAACCTGGCAAACAGCACTGACGGCAATGGTCGCTATATCTTTGCCGGGTATAAA ACGGAAGCGGCGCCATTCGACCAGGCGACAGGTGGTTATCATGGCGGCGAGAAAAGTGTT ACCCAGCAGGTGGATTCCGCACGCACGATGGTAATTGGCCATACGGGAGCGCAAATTTTT AATAGCATCACCAGCAATGCGGTGCCGGAACCGGATGGCTCGGACTCCGAAAAGAATCTG TTTGTCATGCTCGATACGGCAATTGCCGCGCTCAAGACCCCGGTGGAAGGCAATGACGTG GAAAAAGAAAAAGCCGCTGCCGCCATTGATAAAACCAATCGCGGCTTAAAAAATTCGCTT AATAACGTCCTGACCGTTCGTGCGGAACTGGGAACGCAACTGAGCGAACTCAGTACGCTG GATTCACTGGGAAGCGACCGTGCGCTGGGACAGAAGCTACAGATGAGCAACCTGGTAGAT GTGGACTGGAACTCGGTCATTTCCTCCTACGTCATGCAACAGGCGGCATTACAGGCGTCC TATAAAACGTTTACCGACATGCAGGGAATGTCGCTTTTCCAGTTGAACCGGATGTCCAGC TTGATTAATCACGCCATGAGCGGACTTAACGCCGCGCAGGCCGCGTTAAATACGGTCAGT AATAACATCAACAATTATAACGTTGCGGGTTATACCCGGCAGACAACTATTCTGGCGCAG GCAAACAGTACGTTAGGGGCTGGCGGCTGGATAGGTAATGGCGTTTACGTTTCAGGCGTA CAGCGCGAATATGATGCGTTTATCACTAATCAGCTACGCGGCGCGCAAAACCAGAGCAGC GGCTTAACCACGCGCTATGAACAAATGTCGAAAATCGACAACCTGCTGGCCGATAAATCC AGCTCACTGTCTGGCTCGCTGCAGAGTTTTTTTACCAGCCTGCAAACGTTAGTCAGTAAT GCGGAAGATCCTGCGGCGCGTCAGGCGCTGATTGGTAAAGCGGAAGGGCTGGTAAACCAG TTCAAAACCACCGATCAGTATCTGCGCGATCAGGATAAACAGGTCAATATCGCGATTGGC TCCAGCGTGGCGCAAATCAACAATTACGCGAAGCAGATAGCTAACCTGAACGATCAAATC TCCCGTATGACGGGCGTAGGCGCGGGCGCATCGCCGAACGACCTGCTCGATCAACGTGAT CAGTTGGTTAGCGAGCTTAACAAGATCGTTGGCGTCGAGGTGAGTGTACAGGACGGCGGC ACCTATAACCTGACGATGGCCAATGGCTATACGCTGGTGCAGGGGTCGACGGCGCGTCAG TTGGCGGCGGTTCCCTCCAGCGCCGACCCGACGCGAACGACTGTCGCTTATGTCGATGAG GCCGCCGGTAACATCGAAATTCCGGAAAAGTTGCTGAACACCGGTTCGCTCGGCGGGCTA CTGACGTTCCGTTCTCAGGATCTGGATCAGACTCGTAATACGCTGGGCCAGTTGGCGTTG GCGTTTGCCGATGCGTTTAACGCGCAGCATACCAAAGGTTATGACGCCGACGGCAATAAA GGGAAAGACTTCTTTAGCATTGGCTCGCCGGTGGTATATAGCAACAGTAATAATGCCGAT AAAACGGTATCGCTAACCGCTAAGGTGGTCGACAGCACGAAGGTTCAGGCGACGGATTAT AAGATTGTTTTTGACGGTACAGACTGGCAGGTTACTCGCACTGCGGATAACACCACCTTC ACGGCAACAAAAGATGCTGACGGAAAACTGGAGATTGACGGTCTGAAAGTGACGGTAGGG ACTGGCGCACAGAAAAACGACAGTTTTCTTCTCAAGCCGGTCAGCAATGCTATCGTCGAC ATGAACGTTAAAGTGACAAATGAAGCCGAGATTGCGATGGCGTCTGAGTCAAAACTCGAT CCTGATGTGGATACCGGCGACAGCGATAACCGCAATGGTCAGGCATTGCTGGACTTACAA AACAGCAATGTAGTGGGCGGCAACAAAACCTTTAACGATGCTTACGCCACGTTGGTCAGC GATGTGGGTAACAAAACGTCAACGCTGAAAACCAGCAGCACCACGCAGGCGAATGTGGTT AAACAGCTTTATAAACAGCAACAGTCGGTTTCCGGCGTTAACCTCGACGAAGAGTACGGC AATTTGCAGCGTTATCAGCAGTATTATCTGGCGAATGCGCAAGTATTGCAGACCGCGAAT GCGCTGTTTGATGCGTTATTGAATATTCGCATGATCGGAGACGGTAAATTGCTGGCCAGC GCGGCCTGGGATGCGCAATCTCTGAACGAACTGAAAGCGAAAGCGGGCCAGGACCCGGCG GCGAATATCCGTCCTGTGGCCCGTCAGGTGGAAGGGATGTTTGTGCAGATGATGCTGAAA AGTATGCGCGAGGCTTTACCCAAAGATGGTTTATTCAGCAGCGATCAGACGCGTCTGTAT ACCAGCATGTATGACCAGCAGATCGCCCAGCAGATGACCGCCGGTAAGGGATTGGGGCTG GCGGATATGATGGTTAAACAGATGACGGGCGGGCAGACGATGCCTGCAGATGATGCGCCG CAAGTACCGCTTAAATTCTCCCTGGAGACGGTAAACAGCTATCAAAATCAGGCGCTGACC CAACTGGTGCGCAAAGCCATACCGAAAACGCCGGACAGCAGCGATGCGCCGCTCTCCGGC GACAGTAAAGACTTTCTGGCCCGGCTTTCGCTCCCGGCGAGGCTGGCCAGCGAACAAAGC GGGGTGCCGCATCATCTGATTCTGGCGCAGGCGGCGCTGGAGTCCGGCTGGGGGCAGCGG CAAATCCTGCGGGAGAATGGCGAACCCAGCTATAACGTATTTGGCGTGAAAGCGACCGCC AGTTGGAAAGGGCCGGTGACGGAAATCACCACCACTGAATACGAAAATGGCGAAGCGAAA AAAGTGAAAGCGAAATTCCGCGTCTATAGCTCGTATCTGGAGGCGTTATCGGATTATGTC GCGCTGTTAACGCGTAACCCACGCTACGCTGCCGTGACCACTGCCGCCACGGCAGAGCAG GGCGCAGTGGCTCTGCAAAACGCCGGATACGCCACTGACCCGAATTACGCGCGTAAATTG GCCAGCATGATTCAGCAGTTGAAAGCGATGAGTGAAAAGGTCAGCAAAACCTACAGCGCG AATCTCGACAATCTCTTTGTGTTTAAAGCTCTTGCAGGAATCGTTCTGGCACTGGTTGCC ACTCTGGCGCACGCCGAGCGTATCCGGGATCTGACCAGTGTCCAGGGAGTACGGGAAAAC TCGCTGATCGGCTACGGGCTGGTGGTCGGGCTGGACGGTACGGGCGACCAGACGACCCAG ACGCCATTTACCACCCAGACGCTGAATAACATGCTGTCACAACTGGGGATTACGGTCCCC ACCGGCACCAATATGCAGTTGAAAAACGTGGCGGCGGTGATGGTGACGGCGTCGTATCCG CCTTTTGCGCGACAGGGACAAACGATCGATGTCGTCGTTTCCTCAATGGGGAACGCTAAA AGTCTGCGTGGCGGGACGTTATTAATGACGCCGTTAAAAGGGGTGGACAGCCAGGTGTAT GCTCTGGCGCAGGGCAATATTCTGGTCGGCGGCGCGGGCGCTTCCGCAGGCGGCAGTAGC GTGCAGGTTAACCAGCTTAATGGCGGGCGCATCACTAATGGCGCGATTATCGAACGCGAG TTGCCGACTCAGTTCGGCGCTGGCAACACCATTAATCTGCAATTGAACGACGAAGATTTT ACGATGGCGCAGCAAATTACCGACGCCATCAACCGCGCCCGCGGTTACGGCAGCGCCACT GCGCTTGATGCGCGAACGGTACAGGTACGCGTGCCCAGCGGCAACAGCTCGCAGGTGCGT TTTCTGGCGGACATTCAAAATATGGAAGTCAACGTGACGCCGCAGGATGCAAAAGTCGTG ATCAACTCGCGTACCGGTTCGGTGGTCATGAATCGGGAAGTCACGCTGGATAGCTGCGCT GTGGCGCAGGGCAATTTGTCAGTGACAGTCAATCGCCAACTCAACGTCAACCAGCCGAAT ACGCCATTTGGCGGCGGGCAGACCGTGGTGACGCCACAGACTCAGATAGATTTGCGTCAG AGCGGCGGATCGCTACAGAGCGTGCGTTCCAGCGCCAATCTGAACAGCGTAGTGCGCGCG CTGAATGCGCTTGGCGCGACGCCGATGGATCTGATGTCGATTTTGCAGTCCATGCAGAGC GCGGGCTGTCTACGCGCCAAACTGGAAATCATCATGGCCCTGATGGTCGCGACGCTGACA GGATGCGCCTGGATACCCGCTAAACCGCTCGTGCAGGGGGCGACCACGGCGCAGCCGATA CCTGGCCCGGTACCGGTGGCGAATGGCTCCATATTTCAGTCTGCGCAGCCGATTAATTAT GGCTATCAGCCGCTTTTTGAAGATCGTCGACCGCGTAATATCGGCGATACGCTCACGATT GTGTTACAGGAAAACGTCAGCGCCAGTAAAAGCTCGTCGGCAAATGCCAGCCGCGACGGC AAAACCAGCTTTGGTTTTGATACGGTACCGCGTTATCTGCAGGGATTATTCGGTAATTCC CGCGCGGATATGGAGGCCTCCGGCGGCAACTCTTTTAATGGTAAAGGCGGCGCGAATGCC AGCAATACCTTTAGCGGCACGCTGACCGTGACCGTCGATCAGGTTCTGGCCAATGGCAAT TTACACGTCGTGGGGGAAAAACAGATCGCGATTAATCAGGGAACGGAATTCATCCGCTTC TCCGGCGTGGTAAATCCACGCACCATCAGCGGTAGCAACTCTGTTCCCTCGACACAGGTG GCGGATGCGCGGATTGAATATGTCGGGAACGGCTATATTAACGAAGCGCAAAATATGGGC TGGCTGCAACGTTTCTTCCTTAATTTGTCGCCGATGATGATCAGTTCATTATGGATCGCC AAAACCGGTCTGGACGCGCAGCAAACCAATATGGATGTGATTGCCAATAACCTGGCAAAC GTCAGCACCAATGGTTTTAAGCGTCAGCGCGCGGTATTTGAAGATCTGTTGTATCAGACC ATCCGCCAGCCGGGCGCGCAGTCGTCCGAGCAGACGACGCTGCCTTCCGGGCTGCAAATC GGTACCGGCGTGCGTCCGGTCGCCACGGAGCGCCTGCACAGTCAGGGGAACCTGTCGCAG ACCAACAACAGTAAAGATGTGGCGATTAAAGGGCAGGGCTTTTTCCAGGTCATGCTGCCG GACGGTACGTCTGCCTATACCCGCGACGGCTCTTTCCAGGTGGATCAGAATGGTCAACTG GTGACGGCGGGCGGTTTTCAGGTGCAGCCGGCAATCACCATTCCGGCCAACGCGTTAAGC ATCACGATTGGCCGCGACGGCGTGGTCAGCGTTACCCAGCAAGGGCAGGCCGCGCCGGTT CAGGTCGGGCAGCTTAACCTGACCACCTTTATGAACGACACCGGTCTGGAAAGCATCGGC GAGAACCTCTATATCGAAACGCAATCGTCCGGCGCGCCGAACGAAAGCACGCCGGGGCTC AACGGCGCGGGGTTGTTGTATCAAGGGTATGTCGAAACGTCGAACGTTAACGTGGCGGAA GAGCTGGTGAACATGATTCAGGTTCAACGCGCCTATGAAATTAACAGTAAAGCAGTATCG ACGACCGATCAGATGCTGCAGAAACTGACGCAACTCATGGATCACGCAATTTATACCGCC ATGGGGGCGGCCAGCCAGACGCTTAACCAGCAGGCGGTAACGGCCAGCAACCTGGCTAAT GCCTCAACGCCGGGCTTTCGCGCGCAGCTTAACGCGCTACGCGCGGTGCCCGTTGATGGC CTCTCTTTAGCGACGCGCACGTTGGTTACGGCGTCGACGCCGGGGGCGGATATGACCCAG GGTCAGTTGGACTACACTTCCCGCCCGCTGGATGTTGCGTTACAGCAGGACGGCTGGCTG GTGGTGCAAGCGGCGGATGGCGCTGAAGGATATACCCGTAACGGGAATATCCAGGTGGGC CCGACCGGGCAGTTAACCATTCAGGGACATCCGGTTATCGGCGAAGGCGGCCCGATTACC GTTCCGGAAGGGTCGGAAATCACCATTGCGGCAGACGGCACGATCTCCGCGCTCAATCCC GGCGACCCGCCAAACACGGTGGCGCCCGTTGGGCGGCTGAAGCTGGTCAAAGCGGAAGGC AATGAGGTGCAGCGGAGCGATGACGGTTTATTCCGCCTTACCGCCGAGGCACAGGCTGAA CGCGGGGCGGTACTGGCCGCCGACCCGTCAATTCGCATTATGTCGGGCGTGCTGGAGGGC AGTAACGTCAAGCCGGTTGAAGCCATGACCGACATGATCGCCAACGCACGTCGTTTTGAA ATGCAGATGAAGGTTATCACCAGCGTAGATGAGAACGAAGGGCGAGCTAACCAACTGCTG TCGATGAGTATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTGCGGCCACCAACCTT GATGTTATCGGTAATAACATCGCCAACTCCGCCACCTATGGCTTTAAGTCCGGTACGGCA TCATTTGCCGATATGTTCGCCGGTTCCAAAGTGGGGTTGGGCGTAAAAGTGGCGGGGATT ACCCAGGATTTTACCGACGGTACGACAACGAACACCGGGCGCGGGCTGGATGTCGCGATT AGCCAGAACGGTTTTTTCCGCCTGGTAGACAGCAACGGTTCCGTGTTCTATAGCCGCAAC GGCCAGTTCAAACTGGACGAGAACCGTAACCTGGTCAATATGCAGGGGATGCAGTTGACC GGCTATCCGGCCACCGGTACGCCGCCGACCATTCAGCAGGGGGCGAATCCTGCGCCGATC ACCATTCCGAACACGCTGATGGCGGCGAAATCGACCACCACCGCGTCAATGCAGATCAAC CTGAACTCAACGGACCCTGTACCGTCTAAAACGCCCTTTAGCGTGAGTGATGCGGATTCG TATAACAAAAAAGGCACCGTCACCGTTTATGACAGCCAGGGTAATGCCCATGACATGAAC GTCTATTTTGTGAAAACCAAAGATAATGAATGGGCTGTGTACACCCATGACAGCAGCGAT CCTGCAGCCACTGCGCCAACAACGGCGTCCACTACGCTGAAATTCAATGAAAACGGGATT CTGGAGTCTGGCGGTACGGTGAACATCACCACCGGTACGATTAATGGCGCGACAGCGGCC ACCTTCTCCCTCAGCTTCCTTAACTCCATGCAGCAGAACACCGGGGCTAATAACATCGTC GCCACCAATCAAAACGGCTATAAGCCTGGCGACCTGGTGAGCTACCAGATTAACAATGAT GGCACCGTGGTTGGCAACTACTCCAACGAGCAGGAGCAGGTGCTGGGGCAGATTGTGCTG GCTAACTTCGCCAACAACGAAGGTCTGGCATCCCAGGGCGATAACGTCTGGGCGGCGACG CAGGCCTCCGGGGTAGCGCTGCTGGGGACTGCCGGTTCCGGCAACTTCGGTAAGCTGACG AACGGCGCGCTGGAAGCCTCTAACGTGGATTTGAGTAAAGAGCTGGTGAATATGATCGTC GCGCAGCGTAACTACCAGTCGAATGCGCAGACCATCAAAACCCAGGACCAGATCCTCAAT ACGCTGGTTAACCTGCGCATGTCTATTGCCGTAAATATGAATGACCCGACCAACACGGGC GTCAAAACGACGACCGGCAGCGGGTCGATGACCGGAAGCAACGCTGCCGATCTGCAAAGC AGTTTCCTGACCTTACTGGTCGCGCAATTGAAGAACCAGGACCCGACTAACCCATTACAA AATAATGAGTTAACGACACAGTTGGCGCAAATCAGTACCGTGAGCGGCATTGAAAAACTG AATACGACGCTGGGGGCTATTTCCGGGCAAATCGATAATAGTCAGTCCCTACAGGCGACC ACGCTGATTGGACATGGCGTTATGGTGCCTGGCACCACAATTCTGGCGGGTAAAGGCGCG GAAGAAGGGGCCGTGACGTCCACGACGCCGTTTGGCGTGGAATTGCAACAGCCTGCGGAC AAAGTGACGGCAACCATTACCGATAAAGATGGCCGGGTGGTACGGACGCTGGAGATCGGT GAGTTGCGAGCCGGGGTACACACCTTTACCTGGGATGGTAAGCAAACGGACGGAACAACG GTACCGAATGGTTCTTACAACATTGCGATTACCGCCAGCAATGGCGGGACGCAACTGGTG GCGCAGCCGCTGCAATTCGCTCTGGTACAGGGCGTGACGAAGGGCAGTAACGGCAACCTG TTGGATCTGGGTACCTACGGCACCACCACACTCGACGAAGTTCGGCAAATAATCATGCAA ATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGCCTACAA AAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCTAAAGCG CCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGGAATTAT CTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAGCGCGAT CTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCAATGGCA AACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAAGAAGCT GCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAGCAGCAA AATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGATGCTCAG GTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCATAACGGG CATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAAGATATC TTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATTCATCAC GCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAAACGCTT TTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTTCTGCGT CAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGTAAACCT GAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCCGTCGGG TTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAAATGCGC GCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAATAAAGAT GGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGTGTTAAT GAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCCGAAGCG CTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGGGTTGGC GAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGCCAGATT AAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAACTCGCA CAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGTAAAAGC GGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCTTTCCAT CAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAAATTTTC CAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGCGGGGCG GGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAAAAACGA GTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACATCTATG AAAAAGTATCTTGCTTTCGCCGTTACGCTGCTGGGTATGGGTAAAGTCATCGCCTGTACT ACCCTTTTGGTAGGCAATCAGGCTTCGGCTGACGGCTCCTTTATTATCGCGCGCAACGAG GATGGCTCGGCAAATAACGCCAAGCATAAGGTTATTCATCCCGTCGCGTTTCATCAACAA GGCGAGTATAAAGCACATCGCAACAATTTTAGCTGGCCGCTTCCGGAGACAGCGATGCGC TATACGGCGATTCATGACTTTGATACTAACGATAACGCCATGGGTGAAGCCGGTTTCAAT TCGGCGGGCGTCGGAATGAGCGCAACGGAAACCATTTACAACGGCAGAGCGGCGCTGGCT GCCGATCCTTACGTGACAAAAACGGGAATCACGGAAGACGCCATTGAGTCCGTGATCCTG CCAGTGGCGCAATCGGCGCGTCAGGGCGCCAAATTACTGGGAGATATTATTGAACAAAAA GGCGCGGGCGAAGGTTTCGGCGTCGCGTTTATTGATAGCAAAGAGATATGGTATCTGGAG ACGGGAAGCGGACATCAATGGCTGGCAGTACGACTTCCGGCAGATAGCTATTTCGTTTCC GCCAATCAGGGACGTTTACGCCATTACGATCCGAATGATAACGCGAATTATATGGCGTCA CCAACGTTAGTAAGCTTTGCGAAAAAGCAGGGATTATATGATCCGGCCCGCGGCGAATTC GACTTTCATCAAGCCTATTCGCAGGATAACAAAAACGATACCACCTATAATTATCCGCGC GTCTGGACGCTACAACACCAGTTTAATCCGCATCTGGATACGGTCGTTAGCGAAGGGGAA ACATTTTCTGTTTTTTTAACGCCAATAACGAAGATCAGCGTGGCGGCAGTAAAAAACGCG TTACGCAATCACTATCAGGGAACGTCGCACGACCCTTATGCCAGTCATAATCCACAAGAA CCATGGCGACCTATATCCGTTTTTCGTACCCAGGAGTCACATATTTTACAGGTCAGACCG AAATTACCGCAGGCTATCGGCAACGTAGAATACATCGCCTATGGAATGCCATCTCTTAGC GTCTATCTCCCCTATTACCAGGGGATGCGTCATTATCAACCCGGAGATGATAAAGGAACC GATCGGGCGAGCAACGACTCTACCTACTGGACATTCCGCACGCTGCAAACACTGGTTATG CAAGACTACAATACGTTTGCGCCAGATGTGCAACATGCCTGGAAAACATTTGAACAGCAA ACAGCTAAGCAACAGTATAAGATGGAGCAGAGCTATCTGAGATTATATGCGTCGCATCCG AAAGAAGCACAACGCTTACTGCAAAATTTTGAAGATAAAACGATGCAAAATGCGCAGACG CTCGCCCGTCGCCTGACCAATAATATTATTACGACAATGACTTACCGCACAGATATGAAA TATCACTTTTCAAGTACGCAGCCAATGGTTAAGTTATCAATGACGCTGCGCCTGACAATT TCTTTTATCGCCATACTTATCCTCGCCTGTACCGGCATTAGCTGGACGCTCTATAACGCG CTGAGCAAAGAATTAACGTATCGGGATGATATGACGCTAATAAATCGGGCGGCGCAAATG CAGCAACTGTTACTGGATGGCGCCAGGCCGGAAAATCTGCCGCTCTATTTCAATCGGATG GTGGATACGAAGCAGGATATCTTATTGATCCACTCAGCAACAGGCCATAATGTTGCGATT AATCATAGCGGCATCCCCGACCAACGCTTTAACGAGATTCCGCTGGCTAAAAACATCACC CGCGAAACCTTATTTCGCCAGGCGGTACAAGGCACGGAGCTGACCGCGGTACGAGTAAAC GCCAGAAGCGGCGATAACCCGCTGACCCTTACTATTGCCAGGCTGGCGACGGAAAGGCGG CAAATGCTGGCGCAATATCGCCGCAACAGTTTGCTGATTAGCCTTATCGCGATCCTCGTC TGTTCGGCGCTCAGTCCATTAGTCATCAGAAACGGGCTGCGGGCCATTACGTCGCTCAGC CGACTCACCGCGGCGACAGATAGCGGCACACTTCGCCAGCCGCTGGCGGAACAGGCGTTA CCCGTCGAGCTCAGGCCGCTTGGGCAAGCGCTAAATACCATGCGCCAGAAGCTTTCCGAC GATTTTGAACGCCTGAACCAATTTGCCGACGATCTGGCGCATGAGCTGCGCACGCCGGTT AATATTTTACTGGGGAAGAATCAGGTTATGCTGAGTCAGGAACGCAGCGCCGAAGAGTAT CAACAAGCCCTTGTCGATAATATTGAAGAGCTGGAGGGACTGTCGCGACTGACAGAAAAT ATTCTCTTTCTGGCACGCGCGGAGCACCAGAATATAGCGGTAAAAAAACAGCCTGTTTCG CTCAATGCGCTGGTCGAAAATATGCTGGATTATCTTAGCCCCCTTGCCGAAGAGAAGCAC ATCTGTTTTATAAATCAATGTCAGGGAACGGTATGGGCTGACGAAATATTATTACAAAGA GTGCTCTCAAACCTGCTGACGAATGCCATCCGTTATTCTGATGAAAACGCCGTGATACGT ATTGAAAGCGCTTATGATGATAACGTTGCAGAAATTCGGGTCGCTAATCCGGGCAGCCCC ACCGCCGATGCGGATAAGCTTTTCCGGCGTTTTTGGCGAGGAGATAATGCCCGCTACACT GCCGGTTTCGGCCTGGGGTTATCGTTAGTTAACGCGATTGCCCTATTGCACGGTGGCTCG GCATCTTACCGCTATGCCGATGAACATAATATCTTTTCGGTTCGTCTGCCTGATAGCGGT GATAGCATGTCATCTTGTTGGAGATTTACGGATTCGCTAACAAGCCTATGGCATACTGCG TTGATGAAGATTTTATTGATTGAAGATAACCAGAAAACCATTGAGTGGGTACGTCAGGGA CTCACGGAGGCAGGCTATGTGGTTGATTATGCCTGTGATGGACGAGACGGATTACACCTA GCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATGCTGCCGGGGCTTGATGGA TGGCAGGTTTTACGCGCGTTGCGCACTGCATATCAGCCCCCTGTTATTTGCCTGACGGCG CGCGACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGCGCTAATGATTACCTTGTT AAGCCTTTTTCCTTCGCCGAACTGCTGGCCCGGGTGAGAGCTCAACTCAGACAGCATGTC CCGGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGATGCCACAAAGCAATCGGTG TTACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTCCTGCTCCTCTGGTTACTG GCGTCCCGGGCAGGGGAAATCGTGCCCCGAACCGCGATCGCCAGCGAAGTTTGGGGAATT AACTTTGATAGTGAAACCAACACCGTTGATGTCGCGATTCGTCGGCTGCGCGCCAAAGTA GACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCAGGGGATGGGTTATCGATTACAG GCGGAAACGTCGCAGAATGGTATGAAACGATATATACTGGCTACCGCGATAGCGTCTCTT GTTGCAGCCCCGGCAATGGCGCTGGCCGCTGGCAGCAATATTCTCAGCGTACATATTCTC GATCAGCAAACAGGCAAACCAGCGCCCGGCGTGGAGGTGGTACTGGAGCAGAAAAAGGAT AACGGATGGACGCAATTAAACACCGGGCATACCGACCAGGATGGACGAATTAAAGCACTG TGGCCCGAAAAAGCTGCCGCGCCGGGGGATTATCGCGTTATTTTTAAAACCGGCCAGTAT TTTGAAAGTAAAAAACTGGACACGTTTTTCCCGGAGATTCCCGTCGAGTTTCATATCAGC AAAACGAATGAGCACTATCATGTGCCGCTGTTATTAAGTCAGTATGGTTATTCAACCTAT CGCGGGAGCATGCAAGTAGATGAACAACGTCTGCGTTTTCGCGATGCGATGGCAAGTCTG GCGGCAGCGGTCAACATCGTAACCACGGCGGGTCACGCCGGACGCTGCGGTATCACCGCA ACAGCGGTTTGCTCAGTCACTGATACGCCGCCCTCCGTGATGGTATGTATTAATGCCAAT AGCGCCATGAACCCCGTTTTTCAGGGCAACGGCAGGCTGTGCATTAATGTACTTAACCAT GAGCAGGAGCTGATGGCGCGCCACTTTGCCGGTATGACGGGGATGGCGATGGAGGAGCGT TTTCACCAGCCATGTTGGCAAAACGGGCCGCTGGGCCAGCCGGTACTTAACGGCGCGCTG GCCAGTCTTGAAGGCGAGATCAGCGAGGTACAAACCATTGGCACGCATCTGGTGTATCTG GTGGCGATCAAAAATATTATTCTTAGCCAGGAGGGGCATGGCCTGATTTATTTCAAACGC CGTTTTCATCCGGTCAGACTTGAGATGGAAGCGCCTGTTATGGGACGCACACCGGATTAC AAAGCCGCCTTTGGCTGCGCTCTGGGCGCTAACCCAGCCTTCTACGGCCAGTTTGAGCAG AACGCCCGTAACTGGTACACCCGTATTCAGGAGACCGGCCTGTACTTTAACCATGCAATC GTCAACCCGCCCATTGACCGCCACAAACCTGCCGACGAAGTGAAAGACGTCTATATCAAG CTGGAGAAAGAGACGGACGCCGGGATTATTGTCAGCGGGGCGAAAGTTGTCGCCACTAAC TCCGCCCTGACTCACTACAACATGATTGGTTTCGGCTCAGCCCAGGTGATGGGCGAAAAC CCGGATTTTGCTCTGATGTTTGTCGCGCCAATGGATGCCGAAGGCGTAAAACTTATTTCG CGCGCCTCGTATGAAATGGTCGCGGGCGCGACGGGCTCGCCGTTTGATTATCCCCTCTCC AGCCGTTTTGATGAAAACGATGCCATTCTGGTGATGGACAAGGTGCTGATCCCGTGGGAA AACGTATTAATTTACCGTGATTTCGATCGTTGTCGTCGCTGGACGATGGAAGGCGGCTTT GCCCGTATGTATCCACTGCAAGCCTGTGTTCGTCTGGCGGTAAAACTTGATTTCATTACC GCGCTGCTGAAAAAATCGCTCGAATGTACGGGTACCGTAGAGTTCCGGGGCGTGCAGGCC GATCTCGGCGAAGTCGTGGCCTGGCGCAATATGTTCTGGGCATTGAGCGATTCTATGTGT TCTGAAGCAACCCCGTGGGTAAACGGCGCCTGGCTACCGGACCACGCCGCGCTGCAAACC TATCGTGTGATGGCCCCAATGGCCTACGCGAAAATTAAAAATATTATTGAACGTAACGTT ACCAGCGGCCTGATTTACCTGCCTTCCAGCGCCCGCGATCTGAATAATCCGCAAATCGAC CAGTACCTGGCGAAATACGTACGCGGCTCTAACGGAATGGACCATGTTGAACGTATCAAA ATTCTTAAATTGATGTGGGATGCCATCGGCAGCGAGTTTGGCGGTCGCCATGAGCTGTAC GAGATTAACTACTCGGGCAGCCAGGATGAAATTCGTCTGCAGTGTCTGCGTCAGGCCCAG AGCTCCGGCAATATGGATAAGATGATGGCAATGGTCGATCGCTGCCTCTCCGAATACGAT CAGAATGGCTGGACGGTTTCGCATTTGCACAATAACGACGACATCAATCAACTGGATAAG CTGCTGAAAATGCATGATTCATTAACCATCGCCTTGCTTCAGGCGCGCGAAGCGGCAATG ACCTATTTCCGCCCCATCGTTAAAAGCCACAATCTGACCGACCAGCAATGGCGCATTGTG CGAATCCTGGCCGATAGCCCCTCTATGGATTTTCACGAGCTGGCCTTTCGTACCTGTATT TTGCGTCCAAGTCTGACCGGAATATTGACGCGCATGGAGCGAGACGGACTGGTGTTGCGA CTCAAGCCGGTTAACGATCAGCGTAAGTTATATGTCATGTTGACGGAGCAGGGACAAACG TTGTACGCCCGTGCCCGGAGCGAGGTAGAAGAGGCTTATCGAAAAATTGAGGCCGATTTC ACGCCCGAAAAAACACAGCAATTGATGCTGCTGCTGGACGATCTTATTGCTCTGGGGCGC CAGCATCCTGATAGCGAAGCGGAAGCAATGAAGGGTACTGTTTTCGCCGTTGCGTTAAAC CATCGCAGCCAGCTTGATGCCTGGCAAGAGGCTTTCTCTCAGCCTCCCTATAATGCGCCG CCTAAAACCGCAGTGTGGTTCATCAAGCCGCGTAATACGGTGATTCGTCACGGCGAACCC ATTCCTTATCCGCAGGGAGAAAAGGTACTGAGCGGCGCGACAGTGGCGCTCATTGTGGGG AAAACCGCCAGCCGGATACGCCCTGAAGCGGCGGCGGACTATATCGCCGGGTATGCGCTG GCTAACGAGGTCAGCCTGCCGGAAGAGAGCTTTTATCGCCCGGCGATTAAAGCGAAATGT CGCGATGGCTTTTGCCCGCTGGGTGAAATGGCGCCGCTGAGTGATGTGGATAATCTCACC ATTATCACTGAAATCAACGGACGAGAAGCGGACCACTGGAATACTGCCGATTTACAGCGT AGCGCCGCACAACTGCTTAGCGCGTTAAGTGAGTTCGCTACACTTAACCCTGGCGATGCG ATCTTACTTGGTACGCCGCAGAATCGCGTTGCGCTGCGTCCCGGCGATCGGGTGCGTATT CTGGCGAAAGGTTTACCCGCGCTGGAAAATCCGGTTGTCGCAGAAGATGAATTCGCCCGC CACCAGACGTTTACGTGGCCGCTGTCAGCGACGGGAACGTTATTTGCGCTGGGGTTGAAC TACGCCGATCACGCCAGCGAGCTGGCATTTACGCCGCCGAAAGAGCCGCTGGTATTTATC AAAGCGCCAAACACCTTTACCGAACATCACCAAACGTCGGTGCGCCCGAACAACGTCGAA TATATGCACTACGAAGCCGAGCTGGTCGTGGTGATTGGCAAAACGGCGCGTAAGGTGAGC GAAGCCGAAGCCATGGAGTATGTGGCCGGTTACACCGTCTGTAACGACTACGCGATCCGC GACTATCTGGAAAACTACTACCGTCCGAATCTGCGGGTAAAAAGCCGCGACGGCCTGACG CCGATAGGCCCGTGGATTGTGGATAAAGAGGCGGTTTCTGATCCGCACAACCTGACGTTA CGCACCTTTGTCAACGGTGAGCTGCGGCAGGAAGGGACGACCGCCGATCTGATCTTCAGC ATCCCGTTCCTGATTTCTTATCTGAGCGAATTTATGACGTTGCAACCGGGCGACATGATT GCCACCGGTACGCCGAAAGGGCTGTCCGATGTGGTGCCGGGGGATGAAGTTGTCGTTGAA GTAGAAGGCGTGGGTCGCCTGGTTAACCGAATCGTCAGTGAGGAGAGCGCAAAAATGAAG AAAATAAATCATTGGATTAACGGCAAAAACGTTGCAGGTAACGACTACTTCCAGACCACT AACCCGGCGACCGGTGATGTGCTGGCGGAAGTAGCCTCCGGCGGTGAAGCAGAAGTGAAC CAGGCTGTCGCGGCGGCAAAAGAGGCGTTCCCGAAATGGGCCAACCTGCCGATGAAAGAG CGCGCGCGCCTGATGCGCCGCCTTGGCGACCTGATTGACCAGCATGTGCCGGAAATCGCG GCGATGGAAACCGCCGACACCGGCCTGCCTATTCACCAGACTAAAACGTGCGTGCTGATC CCGCGCGCCTCGCATAACTTCGAATTCTTCGCCGAAGTGTGCCAGCAGATGAACGGCAAG ACCTATCCGGTTGACGATAAAATGCTCAATTATACGCTGGTGCAGCCCGTCGGCGTCTGC GCGCTGGTGTCGCCGTGGAACGTGCCGTTTATGACCGCGACTTGGAAAGTTGCGCCGTGC CTGGCGCTGGGTAACACCGCGGTGCTCAAAATGTCCGAGCTGTCGCCGCTGACTGCCGAC AGGCTGGGCGAGCTGGCACTGGAGGCAGGAATTCCGGCAGGCGTGCTGAACGTGGTGCAG GGCTACGGCGCGACGGCGGGCGATGCGCTGGTACGCCACCATGACGTGCGTGCGGTGTCG TTTACCGGCGGTACCGCCACCGGTCGCAATATCATGAAAAATGCCGGGCTGAAAAAATAC TCGATGGAGCTGGGCGGCAAATCGCCGGTGCTGATTTTTGAAGACGCCGACATTGAGCGC GCGCTGGACGCCGCGCTGTTCACCATCTTCTCGATCAACGGCGAACGCTGCACCGCTGGG TCGCGCATCTTTATCCAGCAGAGCATTTACCCTGAGTTCGTGAAGCGCTTTGCCGAACGC GCGAATCGCCTGCGTGTCGGCGATCCGACCGACCCGAACACCCAGGTCGGCGCGCTGATT AGCCAACAGCACTGGGAGAAAGTCTCCGGTTATATCCGCCTCGGCATTGAAGAGGGGGCA ACGCTGCTGGCGGGCGGTGCGGAAAAACCCACTGACCTGCCTGCGCATCTGAAAGGCGGT AACTTCCTGCGCCCAACCGTGCTGGCCGATGTCGACAACCGTATGCGCGTTGCGCAGGAA GAGATCTTTGGGCCGGTCGCCTGCCTGCTGCCATTCAAAGACGAAGCGGAAGGGTTACGT TTGGCGAACGATGTGGAATACGGTCTGGCCTCTTATATCTGGACCCAGGACGTGAGCAAA GTGTTGCGCCTGGCGCGTGGGATTGAAGCCGGCATGGTCTTCGTCAACACCCAGAACGTC CGCGACCTGCGCCAGCCGTTCGGCGGCGTGAAAGCCTCCGGTACCGGGCGCGAAGGCGGC GAATATAGCTTCGAAGTGTTTGCGGAAATGAAAAACGTCTGCATCTCAATGGGCGACCAT CCTATCCCAAAATGGGGAGTTATGGGCAAGTTAGCGTTAGCAGCAAAAATTACCCACGTG CCGTCGATGTATCTTTCTGAACTGCCAGGAAAAAATCACGGTTGTCGTCAGGCAGCCATT GATGGGCATATTGAAATTGGCAAGCGTTGCCGCGAAATGGGCGTTGACACCATTATCGTA TTCGACACCCACTGGCTGGTGAATAGCGCTTACCACATTAATTGTGCCGACCATTTCCAG GGCGTCTATACCAGCAACGAATTGCCGCACTTTATTCGCGACATGACCTATGACTATGAC GGTAATCCGGCGCTCGGCCATCTGATCGCCGACGAGGCGGTCAAACTGGGCGTGCGCGCC AAAGCGCACAACATCCCGAGCCTGAAGCTGGAGTATGGCACGCTGGTGCCGATGCGCTAC ATGAACAGCGACAAGCACTTCAAAGTGGTCTCCATCTCGGCGTTCTGCACTGTGCATGAT TTTGCCGACAGCCGCAAACTGGGCGAAGCCATTCTCAAGGCGATTGAGAAATATGACGGT ACCGTAGCGGTATTCGCCAGTGGTTCTCTGTCGCACCGTTTTATTGACGACCAACGGGCG GAAGAGGGGATGAACAGCTACACCCGCGAGTTCGATCATCAAATGGACGAGCGCGTGGTC AAGCTGTGGCGCGAAGGCAAATTCAAGGAGTTTTGCACCATGTTGCCGGAGTACGCCGAC TACTGCTACGGCGAAGGCAACATGCACGACACGGTCATGCTACTGGGAATGCTGGGGTGG GACAAATACGACGGCAAGGTGGAGTTCATCACCGACCTGTTCGCCAGCTCCGGTACCGGC CAGGTAAACGCTGTTTTCCCGCTGCCTGCGATGCCGCACTTTATTGCTGAATGTACTGAA AATATTCGCGAGCAGGCTGATTTACCAAGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCC GCCACCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGG CAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCC GGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCC CACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTA CATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAAATGCTCGATAAA CAGACCCATACCCTGATCGCTCAGCGACTTAATCAGGCTGAAAAACAGCGTGAACAGATT CGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAAGATGCCTATGCCGTACAGCGT GAATGGGTCAATATCAAGATTGCCGAAGGGCGCACGCTCAAAGGCCACAAAATCGGCCTG ACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGGATTACGGCGCGCTGCTT GACGATATGTTCTTCCATGACGGCGGAGATATCCCCACCGACCGTTTTATCGTCCCGCGT ATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCTGCGCGGCCCTCACTGCACGCTG TTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGGAACTGATTGACGCCCGC AGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGTTCGACACCATTTCCGAC AACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCCCATCAAACCAGACGAGCTGGAT CTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGTGATCGAAGAAACCGGCGTCGCC GCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGGCGAACAAGCTTGCCCCC TACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCTCGTTCACCCGCCCGGTG CCGGCGCGCAAGGGCGACACCTTCCATGTCGATTACGGCAACATGGGCGCGATCAGTTGC CGGTTTGTGATGAAAAATGCTTTCAAAGACGCGTTAAAAGCGGGGCGCCCGCAAATCGGT TTGTGGCTGGGGCTTGCCAACAGTTACAGCGCTGAACTGTTAGCGGGCGCCGGCTTCGAC TGGCTACTGATTGACGGTGAACACGCGCCAAACAACGTGCAGACGGTGTTGACCCAGTTG CAGGCGATTGCGCCTTATCCCAGCCAGCCGGTGGTGCGTCCGTCATGGAACGATCCGGTA CAGATTAAGCAACTGCTCGACGTCGGCGCGCAAACGCTGCTGATACCGATGGTGCAGAAT GCCGATGAAGCGCGAAACGCCGTGGCGGCTACGCGTTATCCGCCTGCCGGTATTCGCGGC GTGGGCAGCGCGCTGGCGCGGGCATCGCGCTGGAATCGCATTCCGGACTATCTCCACCAG GCCAACGACGCCATGTGCGTACTGGTGCAGATTGAAACGCGTGAGGCGATGAGCAATCTG GCGTCAATTCTCGACGTGGATGGCATTGACGGCGTGTTTATTGGCCCGGCGGATCTCAGC GCCGATATGGGCTTTGCCGGCAATCCGCAGCACCCGGAAGTGCAGGCGGCGATTGAGAAC GCCATCGTGCAGATACGCGCGGCGGGGAAAGCGCCGGGGATTCTGATGGCCAATGAAGCA CTGGCGAAACGTTATCTGGAACTGGGGGCGCTATTTGTCGCCGTCGGCGTTGACACCACG CTGCTGGCGCGCGGAGCGGAGGCGCTGGCGGCGCGCTTTGGCGCAGAAAAAAAACTGTCC GGTGCGTCCGGCGTCTATATGAGCGACACATCATCTGCACTTCCGGAAAGCCCCGAGTCT GTCGGTTCGCACAACGCGCTCAGCACGGGTCAACAAACCGTCATAAATAAACTGTTCCGC CGACTGATCGTATTTTTATTCGTGTTGTTTATCTTCTCGTTTTTAGACCGTATCAACATC GGTTTTGCCGGGTTGACGATGGGGCAGGATCTGGGGTTAAGCGCCACCATGTTTGGTCTT GCCACGACGCTGTTTTACGCCACCTACGTCATTTTCGGCATTCCCAGCAACGTGATGTTG AGCATCGTCGGCGCCCGCCGCTGGATTGCGACCATTATGGTGCTATGGGGCATTGCATCT ACCGCCACGATGTTCGCGGTGGGACCGAAAAGCCTGTATGTGCTGCGAATGCTGGTGGGC ATTACCGAAGCGGGCTTTTTGCCAGGAATATTGCTCTATTTAACCTACTGGTTCCCGGCA TTTTTCCGCGCCCGCGCCAACGCATTATTTATGATTGCCATGCCGGCCACTACCGCGTTG GGGTCAATTGTCTCCGGCTATATTTTATCGCTGGACGGCATATTCAATCTGCATGGATGG CAGTGGTTATTCCTGTTGGAAGGATTTCCGTCAGTTTTGTTAGGCATTATGGTCTGGTTT TACCTGGATGATACCCCGGCAAAAGCCAAATGGCTGACGGCAGAGGATAAAAAATGTTTG CAGGAGATGATGGATAATGATCGCCTGACGCTGGTTCAGCCTGAGGGGGCCATCAGCCAT AACGCCATGCAGCAGCGTAGCCTGTGGCGCGAAGTATTCACGCCAATTGTACTGATGTAT ACGCTGGCCTATTTTTGCCTTACCAATACGCTTAGCGCCATTAGTATCTGGACGCCGCAA ATCCTGAAAAGTTTTAATGAAGGCAGCAGCAATATCACCATCGGCCTGCTGGCGGCGATC CCGCAGATTTGTACTGTTCTGGGCATGATTTACTGGAGCCGCCATTCGGACAAACATCAG GAGCGTAAACACCACACTGCGTTACCGTTCCTGTTTGCCGCCGCGGGCTGGCTGCTGGCG TCGGCGACCGACCGTAACCTGATCCAGCTCCTGGGGATCGTGATGGCATCCACGGGTTCC TTTAGCGCGATGGCGATCTTCTGGACCACGCCGGATCAGTCGATCAGTTTACGCGCCAGG GCGATAGGCATTGCGGTCATCAATGCCACCGGCAATATTGGCTCCGCGCTCAGCCCGGTT ATGATTGGCTGGCTAAAAGATATCACTGGTAGCTTCAATAGCGGACTCTGGTTTGTCGCT TCTCTGTTAGTCGTCGGCGCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCG CGCGCCACCCCTATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGAC GAAAGCATGGGCAGTAACGATGTGCATTATCAGTCGTTTGCTCGTATGGCGGATTTCTTT GGTCGTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTCTTGATACC GGGCAGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTG CTAACGCCGCCCTCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTT CTGACGGTACGCGAAGAGCTGGTTTGGCCGCTGCTGGAAGTGCTTTATCCCGGCACCAGA GAGGCCTTCGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACGAGCTGGCG GCGCTCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGC GAACATACCTTGGTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAG CTGGACGATCATGCCGCAACCGGGATGCGCGGTGAACTGAAACTTTTTCAGCGCTTTACC CTGTTAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCTGTGAGTTG CATATTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAA CGCCTGATTTTTGATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAAT GCTGTCAACGAGATCGCCTGGCAATTAGGTTTTAAAGATCCGGCTTATTTCGCCCGTTTC TTTAATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTCCTTCTTTT CTCAACATGATGAAAAAAAGCGTCGCTATGCTGGCGGTTTGTATGCTGGCGCAAAGCCAC CTTGCCATTGCTGCCGGTGCTCCTGCGCCTCAAGAGATCAACATTGTTTTACTGGGCACC AAAGGCGGGCCTTCTTTGCTCAATACAGCCAGACTACCGCAAGCGACGGCGCTCACTATC GGCGATAAGATATGGCTGATAGATGCCGGCTACGGCGCCAGTCTGCAACTGGTGAAAAAT GGCATTCCACTGCGCAACATCAATACTATTTTGCTCACCCATCTGCACAGCGACCACATA CTGGATTATCCTTCCTTGCTGATGAATGCCTGGGCAAGTGGCCTGAAAGACCATACCATA CAGGTTTATGGCCCGCCGGGAACCCAGGCGATGACGAAGGCTAGCTGGAAGGTCTTTGAC AGGGATATCACGTTACGCATGGAAGAAGAGGGGAAACCCGATCCGCGCAACCTGGTTAAG GCGACCGATATCGGCCAGGGCGTCATCTATAAAGATGAACTGGTCACAATAAGCGCGCTG AAAGTGCCTCATTCCCCTTTCCCGGACGGTGAAGCGTTTGCTTACCGTTTTGATACTCAG GGTAAGCGAATCGTCTTCTCTGGCGATACGTCCTGGTTTCCTCCGCTTGCAACGTTTGCC CAGGGGGCGGATATCCTGGTACATGAGGCGGTACATGTCCCTTCGGTAGCAAAACTGGCT AATAGTATTGGCAACGGAAAAACGCTGGCTGAAGCGATTGCGTCGCATCACACCACGATT GAAGATGTCGGTAAGATTGCTCGCGAGGCCCACGTGAAAAAACTGGTGTTAAGTCATCTG GTGCCTGCGACGGTTGCGGATGACGTCTGGCAACAGGAAGCCATGAAAAATTACCCGGGC CCTGTCATTGTCGGTCATGACAATATGACGATAAGCGTACCGATGGCTAACATCACTGTC ACCTTTACCATCACCGAATTTTGTTTGCACACCGGCGTGACGGAAGAGGAGCTAAACGAA ATCGTCGGACTTGGCGTAATTGAGCCTTACGAAGACGATAACGCCGACTGGCAATTCGAC GATCGCGCAGCGAGCGTGGTACAACGCGCGCTACGCTTACGCGAGGAGCTGGCGCTCGAC TGGCCAGGGATCGCGGTCGCGTTAACGCTGCTGGAAGAGAATTCACGGCTGCGCGAAGAA AACCGGTTACTGCTGCAACGCCTTTCTCGCTTTATCTCGCATCCCATGGAACTTAAGGAT TATTACGCCATTATGGGCGTGAAACCGACGGACGATCTCAAGACGATTAAGACCGCCTAT CGCCGACTGGCCCGCAAGTACCATCCAGATGTCAGCAAAGAACCCGATGCCGAAGCCCGT TTCAAAGAGGTTGCTGAAGCATGGGAAGTGCTGAGTGATGAGCAACGGCGCGCCGAGTAT GACCAGTTATGGCAACACCGTAACGATCCACAATTTAATCGCCAGTTCCAGCAACACGAA GGCCAGCCGTATAACGCCGAAGATTTTGATGATATTTTCTCGTCTATTTTTGGTCAGCAC GGTCGTCATTCGCACCACCGCCACGCCGCACGCGGTCATGATATCGAAATTGAAGTGGCG GTATTCCTGGAAGAAACGCTGGAAGAGCACCAGCGTACGATTAGCTATTCCGTCCCCGTT TATAACGCGTTCGGCCTGGTGGAGCGGGAAATTCCCAAAACATTGAATGTGAAAATCCCG GCTGGCGTCAGCAACGGGCAACGAATCAGACTGAAAGGCCAGGGCACGCCGGGGGAAAAC GGCGGACCTAATGGCGATTTATGGCTCGTTATCCATATTGCCCCGCATCCGCTCTTTGAT ATCGTCAATCAGGATCTGGAAGTCGTCCTTCCGCTTGCCCCATGGGAGGCGGCGCTCGGC GCTAAGGTGTCTGTGCCAACGCTTAAAGAGCGTATTTTGCTGACCATTCCCCCCGGCAGC CAGGCAGGTCAGCGGCTGCGTATCAAAGGAAAAGGATTAGCCAGTAAAAAGCACACTGGC GATCTCTATGCCATCATCAAAATCGTTATGCCGCCGAAACCTGACGAGAAAACAGCTGCC CTGTGGCAACAACTGGCGGACGCGCAGTCGTCCTTTGACCCACGCCAGCAATGGGGGAAA GCAATGGCGAAACAACAACGGATGGGCTGGTGGTTTCTTTGCCTTGCATGTGTCGTGGTA ATGGTTTGTACCGCGCAACGCATGGCGGGCCTGCACGCCTTGCAGATGCAGGCGACGGCC TCTGCTGCGGTGGTCAGCGCTCCCTCCTCGACAGATGACGGCTCGCCGGTCACTCCCTGC GAATTAAGCGCCAAGTCGCTGCTGGCGGCGCCTCCAGTACTCTTTGAAGGTGCTATCCTT GCGCTTTATCTACTGCTTTCCTTACTGGCGCCTGTCCGGGTCATGCGCCTGCCGTTTTCG CCTCCACGGGCTATTTCGCCGCCCACATTACGGGTACATCTACGATTTTGTGTCTTCCGT GAAATGATGATTTTATTCAGGCGGATACTGTTCTGCCTGTTATGGCTTTGGCTGCCCGTC TCCTGGGCGGCGGAAAGCGGCTGGCTGCGTTCGCCCGATAACGACCATGCCAGCATACGG CTACGTGCCGATACGTCCGCTAACAGTGAGACCCGGCTGTTGCTGGATGTCAAACTGGAA AACGGCTGGAAAACCTACTGGCGCGCGCCGGGGGAAGGGGGCGTGGCACCCTCTATCGCC TGGAAAGGCGACATGCCTGAGGTAAGCTGGTTCTGGCCAACCCCCTCGCGCTTTGATGTG GCGAATATCACCACCCAGGGATATCACGACGAGGTGACCTTTCCGATGATCGTGCGCGGT ACGCCGCCGGCGACCTTGCGCGGTGTGTTGACGTTATCAACCTGCAGCAATGTTTGTCTG TTGACCGATTACCCCTTTTCCGTGACGCCCACTGTGCAGAATGCCGATTTTGCCCATGAC TATGCGCGGGCGATGGGTAAAGTTCCGCTCCGCAGTGGGCTAACGGACTCGCTTGACGTT GGCTATCGCCCGGGAGAACTGGTGGTCACTGCTACGCGAGCGGCGGGCTGGTCATCGCCC GGGCTCTATCTTGACACCATAGATGACGTCGATTTTGCGAAGCCTCGCCTGCGCGTAGAG GGCGACAGGTTACAGGCGACGGTGCCGGTGACGGACAGTTGGGGCGAAAAGGCGCCCGAT TTGCGCGACAAATCGCTGACCCTCGTGTTAGCCGATGGCGCTATCGCCCAGGAGAGCACG CAAACCATTGGCGCTGCGCCAGCGCAAACGCCGGACAATGCGGCGCTACCTTTCTGGCAA GTTGTAATGATGGCGCTAATCGGCGGACTGATTCTTAATTTAATGCCCTGCGTACTGCCT GTTCTGGGCATGAAACTTGGCTCTATTTTATTGGTAGAGGAAAAAAGCCGCTCTCACATC AGGCGACAATTTTTGGCTTCGGTCGCCGGTATCATTGCGTCATTTATGGCGCTGGCGGCG TTTATGACCCTCCTTCGCCTGTCAAACCATGCGCTGGCCTGGGGAGTCCAGTTCCAGAAT GCATGGTTTATTGGTTTTATGGCGCTGGTGATGTTGTTGTTTAGCGCCAGCCTGTTCGGG CTTTTTGAGTTCAGGCTTCCCTCATCTATGACCACGAAACTGGCCACTTACGGCGGTAAC GGTATGTCGGGACATTTCTGGCAGGGGGCGTTCGCCACGCTGCTGGCGACGCCTTGTAGC GCGCCGTTTCTGGGCACGGCGGTCGCGGTGGCGCTCACGGCGTCGCTGCCGACGCTGTGG GGGCTGTTCCTTGCGCTTGGCCTGGGAATGAGCGCGCCGTGGCTACTGGTCGCGATACGA CCAGGGCTTGCGCTACGTTTACCGCGCCCCGGGCGTTGGATGAATGTCCTGCGCAGGATC CTCGGTCTGATGATGCTGGGGTCGGCTATCTGGCTGGCGACGTTACTCCTGCCGCATTTC GGCTTCACTGCGTCAAAGAGCGCGCAAGACACGGTTCAGTGGCAACCGTTGAGTGAACAG GCAATCCAGTCGGCGCTGGCGCAGCATAAGCGGGTATTTGTCGATGTCACTGCGGACTGG TGTATTACCTGTAAAGTGAATAAATACAACGTCCTGCAAAAAGAGGATGTGCAGGCCGCC TTGCAACAGCCGGATGTTGTGGCGCTGCGGGGAGACTGGACGCTGCCGTCCGATGCCATT ACAGATTTTCTGAAAACGCGCGGCCAGGTCGCCGTGCCGTTTAATCAGGTATATGGCCCC GGTTTGCCGGAAGGGGAGGCACTGCCCACTTTGCTGACCCGCGATGCGGTATTACAAACG TTGAAAAAAGCGAAAGGAATAACCCAAATGAAATACATGATTGTTTTACTGCTGGCGCTG TTTTCGACGCTGAGCATCGCGCAAGAAACCGCTCCTTTTACGCCGGATCAGGAAAAGCAG ATTAAAAATCTGATCCATGCGGCGTTGTTTAACGATCCTGCCAGCCCGCGGATAGGCGCT AAACACCCTAAGCTGACGCTGGTGAACTTTACGGATTACAACTGCCCGTACTGCAAACAG CTCGATCCGATGCTGGAAAAGATTGTGCAGAAATATCCTGACGTTGCGGTCATTATTAAA CCGCTGCCATTCAAAGGAGAGAGTTCCATACTGGCGGCGCGTATTGCGCTGACCACCTGG CGCGATCATCCGCAACAGTTCCTCGCGCTACATGAAAAACTTATGCAAAAGCGCGGTTAC CATACGGATGACAGTATTAAACAGGCCCAGCAGAAAGCAGGGGCGACGCCAGTGACGCTG GATGAAAAAAGCATGGAAACGATACGCACTAATTTGCAGTTGGCAAGACTGGTCGACGTG CAAGGAACGCCAGCGACGATCATTGGCGACGAGCTGATTCCGGGCGCAGTGCCCTGGGAT ACGCTGGAAGCGGTGGTGAAAGAAAAACTGGCGGCTGCCAATGGCGGGATGGCGGGTAAA CTGCGGCGTTGGCTGCGTGAAGCCGCGGTTTTTCTGGCGCTCCTCATCGCGATAATGGTG GTCATGGACGTCTGGCGCGCGCCGCAGGCGCCTCCGGCGTTTGCCGCGACACCATTACAT ACGCTGACGGGAGAGTCGACAACTCTGGCGACCTTGAGCGAGGAACGCCCCGTACTGCTC TATTTTTGGGCCAGCTGGTGCGGGGTATGCCGCTTTACCACGCCTGCGGTCGCTCACCTG GCGGCGGAAGGGGAAAACGTCATGACCGTTGCGCTCCGCTCCGGCGGTGATGCTGAGGTT GCCCGCTGGCTGGCGCGCAAGGGCGTTGACTTCCCGGTCGTCAATGATGCTAACGGCGCC TTATCCGCTGGCTGGGAAATCAGCGTGACGCCAACGCTGGTGGTGGTTTCACAAGGTCGG GTTGTGTTCACCACCAGCGGCTGGACCAGCTATTGGGGCATGAAGCTTCGGCTGTGGTGG GCAAAAACGTTCATGAAAAAATCATTACTCGCTGTTGCTGTGGCAGGGGCTGTTTTGTTG TCATCCGCCGTACAGGCGCAGACAACGCCGGAAGGTTATCAATTACAACAGGTGCTGATG ATGAGCCGCCATAATCTGCGGGCGCCGCTGGCGAATAATGGCAACGTACTGGCGCAGTCG ACGCCGAACGCCTGGCCGGCGTGGGACGTTCCCGGCGGGCAACTGACGACGAAAGGCGGC GTGCTGGAAGTCTATATGGGACACTACACACGTGAATGGCTGGTCGCGCAGGGGCTGATA CCGTCGGGAGAATGTCCGGCGCCCGACACGGTATATGCCTATGCGAATAGTTTGCAGCGC ACCGTCGCCACCGCGCAATTTTTCATTACCAGCGCTTTCCCCGGCTGTGATATTCCTGTT CATCATCAGGAAAAAATGGGCACTATGGACCCTACCTTCAATCCGGTGATTACCGATGAT TCCGCCGCGTTCCGGCAACAGGCCGTACAGGCGATGGAAAAGGCGCGTAGTCAGCTACAT CTTGATGAGAGTTATAAACTGCTTGAGCAGATAACGCATTATCAGGACTCGCCGTCCTGC AAAGAGAAGCATCAGTGTTCGCTAATCGACGCGAAAGATACCTTCAGCGCGAACTATCAG CAAGAGCCTGGCGTGCAGGGGCCGCTGAAAGTAGGGAACTCGCTGGTGGATGCGTTTACC CTGCAATATTACGAAGGCTTTCCGATGGATCAGGTCGCTTGGGGCGGGATCCACACCGAT CGGCAGTGGAAGGTGCTGTCAAAACTGAAAAACGGCTACCAGGACAGCCTGTTTACCTCA CCCACGGTGGCGCGCAATGTCGCTGCGCCGCTGGTAAAATATATCGATAAGGTGCTGGTT GCCGAGCGCGTTAGCGCGCCGAAGGTTACCGTGCTGGTGGGGCATGATTCCAATATCGCG TCGCTGCTGACGGCGCTGGATTTTAAACCCTATCAGCTCCATGACCAGTATGAGAGAACG CCGATTGGTGGTCAGCTTGTCTTCCAACGCTGGCATGACGGTAACGCTAACCGGGATTTG ATGAAAATCGAGTATGTCTACCAGAGCGCCCGGCAGTTACGTAATGCGGAAGCGTTAACG CTCAAATCGCCTGCGCAAAGGGTAACGCTGGAACTGAAAGGATGTCCGGTGGATGCGAAC GGCTTCTGTCCGCTGGATAAGTTCGATAACGTCATGAACACTGCTGCAAAAATGCCAACT CAAGAAGCAAAAGCGCACCGCGTCGGCGAATGGGCAAGCCTGCGTAATACGTCGCCGGAA ATTGCCGAAGCCATTTTTGAAGTCGCTCACTATGACGAGAAACTGGCAGAAAAAATATGG GAAGAAGGTAGCGATGAGGTGCTGATCAAAGCCTTTGAGAAAACGGACAAAGACTCGCTC TTCTGGGGCGAACAAGTCATCGAACGTAAGAACGTAATGGCAAAGATTCTGGTGCTCTAT TATTCCATGTACGGACACATTGAAACCATGGCGCACGCGGTGGCGGAAGGGGCAAAGAAA GTCGACGGCGCAGAGGTCATTATAAAGCGTGTGCCAGAAACAATGCCGCCTGAAATCTTC GCAAAAGCTGGCGGTAAAACGCAAAACGCACCGGTTGCCACCCCACAGGAGCTGGCGGAT TACGATGCCATTATTTTTGGTACGCCAACCCGGTTTGGCAATATGTCAGGCCAGATGCGT ACCTTCCTGGACCAAACCGGCGGACTGTGGGCATCCGGCGCGCTATACGGCAAGCTCGGC GGCGTGTTCAGTTCTACCGGAACGGGCGGCGGCCAGGAGCAGACCATCACCTCGACCTGG ACTACGCTTGCCCATCATGGGATGGTGATTGTCCCGATAGGCTATTCCGCACAGGAACTG TTTGACGTCTCCCAGGTTCGCGGCGGTACGCCTTACGGCGCAACGACTATCGCTGGAGGC GACGGTTCACGTCAACCAAGCCAGGAGGAACTCTCTATCGCTCGCTATCAGGGGGAATAC GTCGCCGGTCTGGCAGTCAAACTCAACGGCATGGCAAACCATCGTGGCGGTTCCGGTAAT TTTGCGGAAGACCGCGAAAGAGCATCAGAAGCAGGTCGTAAAAGTGGTCAGCACAGCGGG GGCAATTTTAAGAATGACCCGCAGCGTGCATCCGAAGCAGGCAAAAAAGGGGGCAAAAGC AGTAACCGTAATCGCATGTCGCAACGCACAGAGAAAAAAATCGGGAAACGTTCGCAGGCC ACCGGTGCAAAACGGCAGCTTATCTTAACCGCCGCGCTTGCCGTTTTTTCCCAGTATGGC ATTCATGGCGCGCGTCTTGAACAGGTCGCCGAGCGGGCAGGCGTCTCCAAAACCAATCTG CTTTATTATTATCCCTCGAAAGAGGCGCTGTATGTCGCGGTAATGCGACAGATTCTGGAT GTCTGGTTGGCGCCGCTCAAGGCGTTTCGCGCAGAATTTTCCCCTCTGGAGGCCATCAAA GAGTATATCCGTCTCAAGCTGGAGGTTTCGCGTGATTATCCGCAGGCGTCGCGGCTCTTC TGCATGGAGATGCTGGCGGGCGCGCCGCTCTTAATGGATGAACTGACCGGCGATCTAAAA GCGTTGATAGATGAAAAATCCGCGCTGATTGCCGGATGGGTGCACAGCGGGAAACTCGCG CCCGTTTCTCCGCATCATTTGATCTTCATGATTTGGGCCGCCACGCAACATTACGCCGAT TTCGCCCCTCAGGTTGAAGCGGTAACCGGCGCGACGCTTCGCGATGAAGCCTTTTTCAAC CAAACGGTCGAAAGCGTTCAGCGCATTATTATTGAAGGGATTCGCGTGCGTATGAAACGA ATTTTCCTTACCTGCGCGGCGTTGTTGTTCAGCAGTCAGGCGTTGGCCGATGAGTGTGCC AGCGCCAGTACGCAGCTGGAAATGAATCGCTGCGCCGCCGCGCAATACCAGGCGGCAGAT AAAAAGCTGAACGAAACCTATCAAAGCGCGATTAAGCGTGCGCAACCGCCGCAGCGTGAG CTATTGCAAAAAGCGCAGGTGGCATGGATTGCCCTGCGCGACGCCGATTGCGCGCTGATT CGCTCAGGTACGGAGGGCGGCAGCGTTCAACCCATGATCGCCAGCCAGTGCCTGACCGAT AAAACGAACGAACGCGAAGCGTTTTTAGCCTCGCTGCTGCAATGTGAAGAGGGTGATTTG AGCTGCCCACTGCCGCCAGCCGGTATGGGAACCACCACGATGGGGGTTAAGCTGGACGAC GCCACGCGCGAACGGATCAAAATGGCCGCGTCGCGTATCGATCGCACGCCGCACTGGTTA ATAAAACAGGCAATCTTTAGCTATCTGGACAAGCTGGAAAATAGCGATACGCTACCGGAG CTACCTGCGCTGTTTGCCGGCGCGGCAAATGAAAGCGAGGAGCCGGTCGCGCCGCAGGAT GAGCCGCATCAGCCCTTTCTGGAGTTTGCCGAACAGATTCTTCCCCAATCCGTCTCTCGC GCCGCCATCACCGCCGCCTGGCGCCGCCCGGAAACCGATGCGGTGTCAATGCTAATGGAA CAGGCGCGCCTGTCGCCGCCTGTCGCTGAGCAGGCGCATAAACTGGCGTATCAACTGGCG GAGAAATTGCGCAATCAAAAATCCGCCAGCGGTCGCGCGGGTATGGTGCAAGGCCTGTTG CAGGAGTTTTCCCTCTCTTCGCAAGAAGGCGTAGCGCTGATGTGTCTGGCGGAAGCGCTG CTGCGTATTCCCGACAAAGCTACGCGCGATGCGTTAATTCGCGACAAAATCAGTAATGGC AACTGGCAGTCGCATATTGGCCGTAGCCCGTCGCTGTTTGTAAACGCCGCCACCTGGGGG CTGCTCTTTACCGGCCGACTGGTCTCAACGCATAACGAAGCCAATCTTTCGCGCTCGCTG AACCGCATTATCGGCAAGAGCGGCGAACCGTTAATCCGCAAAGGCGTCGACATGGCGATG CGTTTAATGGGCGAGCAGTTCGTGACTGGCGAAACCATTGCTCAGGCGCTGGCGAATGCC CGAAAACTGGAAGAGAAAGGGTTCCGCTATTCTTACGATATGCTGGGCGAAGCCGCGTTA ACCGCCGCCGATGCGCAGGCCTATATGGTCTCTTACCAGCAAGCGATTCATGCCATCGGC AAAGCGTCTAACGGTCGCGGTATTTACGAAGGGCCAGGCATCTCGATTAAGCTGTCCGCC CTGCATCCACGCTATAGTCGCGCGCAATACGATCGGGTAATGGAGGAGCTTTATCCGCGC CTGAAATCCCTGACGCTGCTGGCGCGCCAGTATGATATCGGTCTCAATATCGACGCCGAA GAGGCGGATCGTCTGGAGATCTCGCTTGATCTGCTGGAAAAACTCTGCTTCGAACCCGAA CTGGCGGGCTGGAACGGCATTGGCTTTGTGATTCAGGCTTACCAGAAACGCTGCCCGCTG GTCATTGATTATTTAGTCGATCTGGCCTCCCGTAGCCGCCGTCGGCTGATGATTCGTCTG GTGAAAGGCGCCTACTGGGATAGCGAGATCAAACGCGCGCAAATGGAAGGGCTGGAGGGC TATCCAGTTTATACCCGCAAAGTGTATACCGATGTCTCTTATCTGGCCTGCGCGAAAAAA CTGCTCGCCGTCCCTAATCTGATCTACCCGCAGTTCGCGACCCATAACGCTCACACACTG GCGGCGATTTATCATCTGGCCGGGCAAAATTACTATCCGGGTCAGTACGAATTCCAGTGC CTGCACGGCATGGGAGAACCGCTGTATGAACAGGTCACCGGTAAAGTGGGGGACGGAAAA CTTAACCGTCCCTGCCGTATTTACGCGCCGGTGGGAACACACGAAACCCTGCTGGCCTAT CTGGTACGACGCCTGCTGGAAAACGGCGCCAACACCTCTTTTGTCAACCGCATCGCCGAT GCCACCCTACCGCTCGATGAACTGGTGGCCGACCCGGTCGAGGCCGTGGAAAAACTGGCG CAGCAGGAAGGTCAGGCTGGCATACCGCATCCAAAAATTCCGCTGCCGCGCGATCTGTAC GGCGAAGGTCGGATAAACTCCGCCGGACTTGATTTAGCGAATGAACATCGCCTCGCCTCG CTTTCTTCTGCCCTGTTAAGCAACGCCATGCAGAAATGGCAGGCCAAACCTGTGCTGGAA CAACCGGTGGCCGACGGTGAGATGACGCCGGTTATCAACCCGGCGGAACCGAAAGATATT GTTGGCTGGGGACGCGAAGCGACAGAAAGCGAGGTTGAACAGGCGTTGCAAAACGCGGTC AATCAGGCGCCGGTTTGGTTTGCGACGCCGCCGCAAGAACGCGCCGCTATTTTGCAGCGG GCGGCGGTATTGATGGAAGACCAAATGCAGCAGTTGATTGGCCTGTTGGTGCGTGAAGCG GGGAAAACGTTCAGCAACGCCATTGCCGAAGTGCGCGAAGCGGTAGACTTCCTCCATTAT TATGCCGGTCAAGTGCGTGACGATTTCGATAACGAAACGCATCGCCCGTTAGGGCCGGTG GTCTGTATCAGTCCGTGGAACTTTCCGCTGGCCATTTTCACTGGCCAAATCGCCGCCGCG CTGGCGGCAGGTAACAGCGTTCTGGCGAAACCGGCAGAGCAGACATCGCTGATTGCCGCC CAGGGCATTGCCATTTTGCTGGAAGCGGGCGTACCGCCGGGCGTCGTGCAACTGTTGCCG GGACGGGGAGAAACCGTCGGCGCCCAGCTTACCGCCGATGCGCGTGTACGCGGCGTGATG TTTACCGGTTCCACGGAGGTCGCGACGTTGTTGCAGCGCAACATCGCCACGCGTCTTGAC GCCCAGGGGCGCCCTATTCCGTTGATTGCGGAAACCGGCGGTATGAACGCTATGATTGTC GACTCTTCCGCGCTCACCGAGCAGGTGGTCGTGGATGTGCTGGCTTCCGCCTTCGACAGC GCCGGACAACGCTGTTCCGCGCTCCGCGTGCTGTGTTTGCAGGACGATATCGCCGAACAT ACGCTGAAAATGTTACGCGGCGCGATGGCGGAGTGTCGGATGGGGAATCCAGGCCGTCTG ACGACCGATATCGGGCCGGTGATCGATAGCGAGGCCAAAGCCAACATTGAACGTCATATC CAGACGATGCGCGCCAAAGGCCGCCCGGTTTTCCAGGCCGCGCGTGAAAACAGCGATGAC GCGCAGGAATGGCAGACCGGTACGTTTGTTATGCCCACGCTTATTGAGCTGGAAAACTTC GCAGAACTGGAAAAAGAGGTCTTCGGGCCCGTGCTGCACGTCGTGCGTTATAACCGTAAC CAACTGGCGGAGCTTATCGAACAGATTAACGCTTCCGGCTACGGGCTAACGCTGGGCGTA CATACCCGTATTGATGAAACCATTGCGCAAGTCACCGGTTCCGCCCATGTCGGCAACCTG TACGTTAACCGTAATATGGTGGGCGCGGTCGTCGGCGTCCAGCCGTTTGGCGGCGAAGGC CTGTCCGGCACCGGGCCAAAAGCGGGAGGGCCGCTCTATCTCTACCGCCTGCTGGCACAC CGCCCGCCCAATGCGCTCAATACGACGCTGACTCGTCAGGATGCGCGTTACCCGGTGGAT GCGCAGCTTAAAACCACGCTACTCGCGCCGTTGACCGCTCTGACGCAATGGGCGGCGGAT CGCCCGGCGCTACAGACGCTCTGCCGACAATTCGCCGATCTGGCGCAGGCCGGCACGCAG CGCCTGCTACCGGGGCCGACCGGCGAGCGTAATACCTGGACGCTGTTGCCGCGTGAACGG GTGTTATGCCTGGCTGATGATGAACAGGACGCGTTGACGCAGCTTGCCGCCGTTCTCGCC GTCGGCAGTCAGGCGCTATGGTCAGACGACGCCTTCCACCGCGATCTGGCGAAACGTCTC CCCGCCGCCGTCGCGGCGCGTGTCCAGTTTGCGAAAGCGGAAACGCTGATGGCGCAGCCG TTTGACGCGGTGATTTTCCACGGCGACTCCGACAAGCTGCGAACCGTGTGCGAAGCCGTC GCCGCCCGCGAAGGCGCGATAGTGTCGGTACAGGGGTTCGCCCGCGGCGAAAGCAATATG CTGCTGGAACGGCTCTATATTGAACGTTCGCTGAGCGTAAACACTGCCGCCGCTGGCGGT AATGCCAGCCTGATGACAATTGGCATGGCTATTAGCACACCGATGTTGGTGACATTCTGT GTCTATATTTTTGGCATGATATTGATTGGGTTTATCGCCTGGCGCTCAACCAAAAACTTT GATGACTATATTCTTGGCGGTCGCAGCCTGGGGCCGTTTGTTACGGCTTTATCAGCCGGC GCGTCGGATATGAGCGGCTGGCTGTTAATGGGGCTGCCTGGCGCTATCTTTCTGTCGGGG ATCTCTGAAAGCTGGATCGCCATTGGCCTGACGTTAGGCGCATGGATTAACTGGAAGCTG GTGGCCGGGCGCCTGCGCGTGCATACCGAATTTAACAATAACGCGCTCACGCTGCCGGAC TATTTTACCGGTCGGTTTGAGGATAAGAGCCGAGTCCTGCGTATTATTTCCGCGCTGGTC ATTCTGCTGTTTTTCACTATCTATTGCGCATCAGGTATTGTCGCTGGGGCACGACTGTTC GAAAGCACCTTCGGTATGAGCTATGAAACCGCACTGTGGGCGGGGGCCGCGGCAACCATT ATTTATACCTTTATCGGCGGGTTTCTTGCCGTTAGCTGGACGGATACCGTTCAGGCCAGC CTGATGATTTTTGCGTTAATCCTGACGCCGGTGATGGTTATTGTCGGCGTAGGCGGTTTT AGCGAGTCGCTGGAAGTGATCAAGCAAAAGAGCATCGAGAATGTCGACATGCTCAAGGGG CTGAATTTTGTCGCTATTATTTCTCTGATGGGCTGGGGGCTGGGTTACTTCGGTCAGCCG CATATCCTGGCGCGCTTTATGGCGGCGGATTCCCATCACAGTATTGTTCATGCGCGTCGT ATCAGTATGACCTGGATGATTCTGTGTCTGGCGGGCGCGGTGGCGGTGGGCTTCTTTGGC ATTGCGTACTTTAACAATAACCCCGCGCTGGCCGGGGCGGTGAACCAAAACTCAGAACGC GTATTTATTGAACTGGCGCAGATCCTGTTTAACCCGTGGATTGCCGGTGTTCTGCTGTCT GCTATCCTGGCGGCGGTGATGTCGACGTTGAGCTGTCAGTTGCTGGTATGCTCCAGCGCG ATTACGGAAGATTTATATAAGGCTTTTCTGCGTAAAAGCGCCAGCCAGCAAGAGCTGGTA TGGGTAGGGCGAGTGATGGTGCTGGTGGTAGCGCTGATCGCCATTGCGCTGGCGGCGAAT CCTGATAACCGTGTGCTGGGGCTGGTGAGCTACGCCTGGGCTGGATTCGGCGCGGCATTT GGACCTGTTGTCCTGTTTTCTGTGATGTGGTCGCGTATGACACGTAACGGCGCGCTGGCG GGAATGATTATTGGCGCGGTGACGGTTATCGTCTGGAAACAATATGGCTGGCTGGATCTG TATGAGATTATCCCTGGCTTCATTTTCGGCAGCCTGGGGATCGTAATCTTTAGCCTGCTT GGCAAAGCGCCGACAGCAACGATGCAGGAACGCTTTGCAAAAGCGGACGCGCATTATCAT TCCGCGCCGCCGTCGAAGCTACAGGCGGAAATGGTAATGTCCGCACCAGGACACATTGTT TACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGTGGTGGTCTTGTCATCTTA AAAGCTCTCATCATTTCCCTTACTGTCCATACCCATGACGCCATATGTGGTGCGCGTAGC CGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAGGAAGCCAACCCTCAGATG TGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTATACCTACAACTCAAGGTGC TATCCATGGGAAGACAAAAAGCAGATGGGAAGACAAAAAGCAGTGATCAAAGCTCGTCGT GAAGCAAAGCGTGTGTTGAGACGAGATTCGCGTAGTCATAAGCAACGTGAAGAAGAATCG GTCACGTCACTGGTACAGATGGGCGGAGTAGAAGCCATTGGCATGGCGCGCGATAGTCGC GATACCTCTCCTGTTAAGGCGCGAAATGAAGCACAGGCGCATTATCTGAACGCTATCGAC AGTAAACAGCTTATTTTTGCGACCGGCGAAGCCGGCTGCGGAAAAACATGGATCAGTGCG GCAAAGGCGGCAGAAGCATTGATTCATAAGGACGTCGAGAGGATCATTGTGACGCGTCCG GTATTGCAGGCTGATGAAGATCTTGGTTTTTTGCCCGGTGATATCGCTGAAAAATTCGCG CCTTATTTTCGTCCCGTCTACGATGTCCTGCTTAAACGGTTGGGCGCGTCCTTTATGCAA TATTGTTTGCGCCCGGAAATCGGTAAGGTAGAAATTGCCCCGTTCGCCTATATGCGTGGG CGTACTTTTGAAAATGCGGTCGTGATCCTCGACGAGGCGCAAAATGTGACTGCGGCGCAA ATGAAAATGTTTTTGACGCGATTAGGCGAAAATGTCACGGTCATTGTCAATGGCGATATT ACGCAATGCGACCTGCCGCGCGGTGTGCGTTCCGGGTTGAGTGATGCGTTGGAACGCTTT GAAGAAGATGAAATGGTGGGGATTGTGCATTTCAACAAAGACGACTGCGTGCGCTCGGCG CTTTGTCAGCGAACGCTCCACGCATACAGCATGGAGCCTCAACCCCCACGTCTTAAACCC GGAAAAATCCTTGACACTCTGGGTGCTATGCAAAAAAGCCTGACACGTGCCTCCCAGCGT ATTGCGCAATATATTTTAGCCTTCCCCAGACAGGTGACACAGTCATCTATTGCCGATTTG TCGCGCGACACACAGGCCGGAGAAGCCACGGTTATTCGCTTTTGTCGCACCCTGGGCTAT AAAGGTTTTCAGGATTTTAAAATGGACCTGGCCATTGAACTTGCCACTACCGAGTCTGAT GACAGTAGTCCTCTACTGGATGCCGAAGTTAGCGAATCCGACGATGCCCACGCCATTGGT TTAAAATTGCAGAACACCATTAGTAATGTATTATCTGAAACGCTAAATCTGCTTGATATG CAACAGGTTCTCGGTGTCGTGGACGCCCTACGTCACTGTCACTCAGTTTATATCTTTGGT GTGGGCTCATCGGGGATCACGGCGCTGGATATGAAACACAAGCTAATGCGTATTGGTTTA CGGGGCGATGCGGTAAGCAATAACCATTTTATGTACATGCAGGCTACGCTATTAAAAGCA GGCGATGTCGCGATGGGTGTCAGTCACTCGGGCACATCGCCAGAAACAGTGCATTCACTC CGATTGGCCCGACAGGCTGGCGCCACCACAGTCGCCATTACCCATAATCTGGGTTCTCCA TTATGTGAAGAGGCCGATTTTTGCCTGATCAATGGTAATCGGCAAGGAATGTTGCAGGGT GACTCGATCGGTACGAAAGCCGCGCAGCTTTTCGTCTTTGACCTGCTCTATACCCTTCTT GTACAGTCCTCGCCGGAACAGGCCCGAGAAAGCAAATTACGGACAATGAATGCCCTGGAC ATGACAAAAGTGATATGTCTCAAAGTCCAGGGCGGCATTGGTGAAATTTTTACGGTGACG CAGCAGGCGGATAAATTCTTTCCGGCTACGCAGTTCCACTGGAGCTGGACGGAAAGCACA GTACCTGTATTGATGATTGGTTTTCTGTTTGCCAATATTCAGCAATTTACTGCCAGTCAG GATGTGGTCCAACGCTATATCGTGACTGACTCCATAGAGGAAACGAAGAAAACATTACTT ACAAATGCCAAACTGGTTGCTGTGATCCCTGTTTTCTTTTTTGCTATCGGCTCGGCATTA TTTGTCTACTATCAGCAACATCCACAATTATTACCGGCGGGATTCAACACTGGCGGCATT TTGCCCTTATTCGTGGTCACCGAAATGCCAGTCGGCATTGCAGGGTTGATAATCTCCGCT ATTTTCGCTGCCGCGCAGTCCAGCATCTCCAGCAGCTTAAACAGCATTTCCAGTTGTTTT AATTCCGATATCTATCAGCGTTTGAGTCATAAAAAAGGAACGCCAGAAAACCGTATGAAA ATAGCTAAGTTAGTTATTCTGGTCGCGGGCCTGATAAGTAGCGCGGCCTCGGTATGGCTG GTCATGGCCGATGAATCAGAAATCTGGGATGCATTTAATAGTCTGATAGGTCTGATGGGA GGGCCAATGACCGGTCTGTTCATGCTGGGCATTTTCTTTAAACGAGCAAATGCCGGGAGT GCGGTTTTAGGAATTATTATCAGCGTCATTACCGTGCTGGGCACACGCTATGCCACTGAC CTTAACTTCTTCTTTTATGGGGTCATTGGCTCGCTAAGCGTGGTGATCAGCGGCGTTATT TTCGCCCCGTTATTTGCCCCGGCACCGCCATTGACGCTGGATGAAAAACCTGAACCAAAG GTGACATTAATGTCACTATTAGCCAGGCTGGAACAAAGTGTACACGAAAACGGTGGGCTG ATTGTCTCATGCCAACCGGTACCAGGCAGCCCTATGGATAAACCTGAAATTGTGGCTGCA ATGGCACAGGCAGCGGCTTCGGCGGGTGCGGTCGCTGTGCGCATTGAAGGCATTGAGAAT CTGCGGACTGTTCGTCCCCATCTTTCTGTTCCTATTATTGGGATAATTAAACGTGACCTT ACAGGGTCGCCAGTCCGTATCACTCCATATTTACAGGATGTTGACGCCCTGGCGCAGGCA GGTGCCGATATTATCGCTTTTGATGCCTCATTCCGCTCTCGCCCGGTTGATATTGATAGT TTACTGACACGTATTCGCCTGCATGGATTACTGGCGATGGCAGACTGTTCAACCGTGAAT GAAGGCATAAGTTGCCATCAGAAAGGAATCGAATTCATTGGTACAACACTGTCTGGCTAT ACCGGTCCCATCACGCCGGTTGAGCCAGATTTGGCAATGGTGACACAACTGAGTCATGCA GGTTGTCGTGTTATTGCCGAGGGGCGCTATAACACGCCTGCACTGGCGGCCAATGCTATT GAGCATGGTGCCTGGGCAGTTACCGTTGGTTCCGCTATCACCCGTATCGAGCATATCTGT CAGTGGTTCAGTCACGCAGTAAAACGCATGAAAAATTTTAAGAAAATGATGACGCTAATG GCGCTATGTTTATCAGTTGCTATCACCACATCAGGATATGCAACCACGCTTCCTGATATA CCAGAACCACTGAAAAATGGTACTGGCGCTATTGATAATAATGGCGTGATTTATGTCGGC TTAGGTACCGCAGGGACATCCTGGTATAAAATTGATCTTAAAAAGCAACATAAAGACTGG GAGCGTATAAAGTCGTTTCCTGGTGGAGCTCGTGAGCAATCCGTGTCGGTATTTTTAAAT GATAAGCTGTATGTTTTTGGTGGCGTAGGGAAAAAAAACAGTGAATCACCGTTGCAGGTT TATAGCGATGTGTACAAATACTCACCGGTGAAAAATACATGGCAAAAAGTTGATACTATA TCTCCAGTTGGATTAACAGGGCATACGGGAGTAAAATTAAACGAAACGATGGTACTTATT ACCGGAGGGGTTAATGAGCATATCTTTGATAAGTATTTTATTGATATAGCGGCTGCGGAT GAAAGTGAAAAAAATAAAGTCATCTATAATTATTTTAATAAACCTGCCAAAGATTATTTT TTTAATAAAATCGTATTTATCTACAATGCTAAAGAGAACACATGGAAGAATGCCGGTGAG CTGCCAGGCGCGGGGACGGCAGGATCGTCATCGGTAATGGAAAATAATTTCTTGATGCTG ATTAATGGTGAGCTCAAACCGGGTTTACGTACCGATGTGATTTACCGCGCCATGTGGGAT AACGATAAGCTAACATGGTTGAAGAACAGCCAGTTACCGCCATCGCCTGGAGAACAACAG CAGGAAGGGTTGGCCGGAGCATTTTCGGGCTATAGCCACGGTGTCCTGCTTGTCGGTGGT GGCGCGAATTTTCCGGGAGCAAAACAAAATTATACTAATGGAAAGTTTTATTCCCACGAA GGGATAAATAAAAAATGGCGAGATGAAGTCTATGGTTTGATTAATGGCCATTGGCAATAT ATGGGTAAAATGAAACAACCTCTCGGCTATGGTGTATCAGTAAGTTATGGTGATGAAGTT TTCCTTATTGGTGGTGAAAATGCTAAAGGGAAACCTGTTTCGTCTGTAACCTCCTTTACC ATGCGTGATGGTAATTTATTAATAAAAATGAAAATCAACAGATATCTTCTGGGTATGGTT TCGTTTATAGCATTTTCATCATATCTACAAGCGGCAACCCTTGATTATCGGCATGAATAT GCTGATAGAACCAGAATTAATAAAGACCGTATTGCTATAATTGAAAAGCTTCCTAACGGC ATTGGTTTTTATGTCGATGCCAGCGTTAAATCGGGAGGAGTAGATGGTGAGCAGGATAAG CATTTAAGCGATCTCGTCGCAAACGCTATAGAACTGGGCGTAAGTTATAATTATAAAGTT ACGGACCATTTTGTTTTGCAGCCTGGATTTATATTTGAAAGCGGTCCAGACACTTCAATT TATAAGCCTTATTTAAGGGCGCAATATAATTTTGATTCTGGTGTTTATATGGCTGGTCGT TACCGTTATGACTATGCAAGGAAGACAGCTAACTATAATGATGATGAGAAAACGAATAGA TTTGATACTTATATAGGTTATGTTTTTGATGAGTTGAAATTGGAATATAAATTTACCTGG ATGGATAGCGATCAAATTAAATTTGATAACAAAAAAACAAACTATGAACATAATGTGGCT TTAGCCTGGAAACTGAATAAGTCATTTACACCATACGTTGAGGTCGGAAATGTAGCGGTG AGAAATAATACCGATGAGAGACAGACCCGTTATCGCGTTGGATTACAATACCACTTTGTG ATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACACGTCCACAAAAAAATGCTTTATTT TCAGCATGGCTGGGTTACGTTTTTGATGGCTTCGACTTTATGCTGATTTTCTACATTATG TATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTTGCCACAGCG GCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGACAAATTTGGC CGTAAGCCGTTAATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGGTTAAGTGGC CTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGTTTTATTGTCGGTATGGGGATGGCG GGGAAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCATTTAAAATCT AAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCAGCCTATTTT ATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGTTTGCTACCC GTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGGGAAGAAGCC AAACTCAGTGGTCTCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCTTTGTCAATG AAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATTGTTCTGTTC TCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTGGCGGGAGAG GGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGCACTGTATTG GGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACGTTCAGCATT GGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAAGATAATTAT TTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTTGGCGGGCTG GTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGTACCGGGCTT ATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACCTGGCTTGGA ATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACCGCAACAATT CTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAAAGGTTTCAG TCAACAAAAGAATTTATGACGAAATACGGTGTTATAGGTACAGGTTATTTTGGCGCTGAA CTGGCGCGATTTATGTCTAAGGTTGAAGGGGCGAAAATCACTGCGATTTACGATCCGGTA AATGCGGCTCCGATAGCGAAAGAGCTGAACTGTGTCGCCACTTCAACGATGGAGGCGCTT TGTACCCATCCTGATGTGGATTGCGTAATTATTGCTTCACCAAATTACTTACATAAAGCG CCGGTCATTGCGGCGGCTAAAGCGGGTAAACACGTGTTTTGTGAAAAACCTATCGCCTTA AATTACCAGGATTGTAAGGATATGGTTGATGCCTGCAAAGAAGCTGGTGTTACCTTTATG GCGGGTCACGTTATGAACTTTTTTCACGGGGTTCGCCACGCTAAAGCGCTCATCAAAGCC GGTGAAATCGGTGAAGTTACACAAGTTCACACTAAACGTAATGGTTTTGAAGACGTGCAG GATGAGATCTCATGGAAGAAGATTCGCGCAAAGTCAGGTGGGCATCTGTACCATCACATT CACGAGCTAGATTGTACACTGTTCATCATGGATGAAACCCCATCCCTGGTTTCAATGGCG GCGGGGAATGTTGCGCACAAAGGTGAAAAATTTGGTGATGAAGATGATGTTGTCCTAATC ACCCTTGAGTTTGAAAGCGGTCGTTTCGCGACACTTCAGTGGGGATCATCGTTCCACTAC CCTGAGCACTATGTATTAATTGAGGGCACGACAGGTGCAATTCTCATTGATATGCAAAAC ACGGCTGGTTATCTAATAAAAGCGGGCAAAAAAACACACTTTCTTGTGCATGAAAGCCAG GCGGAGGATGATGATCGTCGCAACGGTAACATATCCAGCGAGATGGATGGCGCAATCGCT TATGGTAAACCCGGTAAACGTACGCCGATGTGGCTCTCATCAATTATGAAACTGGAGATG CAGTACTTGCATGATGTGATAAACGGTCTGGAGCCAGGCGAGGAGTTTGCTAAATTGCTA ACGGGAGAAGCGGCGACAAATGCCATTGCTACCGCTGATGCTGCGACGCTTTCTTCAAAC GAGGGGCGCAAAGTTAAACTCACTGAAATTCTTGGCATGGAGATAATTTTTTATCACCCG ACATTTAACGCCGCCTGGTGGGTAAATGCGCTGGAGAAGGCTCTCCCACATGCGCGCGTT CGTGAATGGAAGGTCGGTGATAACAACCCCGCAGACTATGCGCTTGTATGGCAGCCCCCG GTTGAAATGCTGGCCGGAAGACGCTTAAAAGCCGTCTTTGTGCTGGGCGCGGGGGTGGAT GCAATTCTGAGTAAATTAAATGCGCATCCGGAAATGCTGGACGCCTCCATTCCTCTATTC CGTCTGGAAGATACCGGAATGGGCCTGCAAATGCAGGAGTATGCCGCCAGCCAGGTATTA CACTGGTTCCGTCGTTTCGATGATTATCAGGCGCTGAAAAATCAGGCGCTATGGAAACCG TTGCCGGAATATACCCGCGAAGAGTTTAGCGTCGGTATCATAGGCGCAGGGGTACTGGGC GCAAAAGTGGCAGAAAGTCTACAGGCGTGGGGGTTCCCGTTACGTTGCTGGAGTCGTAGC CGCAAATCCTGGCCTGGCGTGGAAAGTTATGTAGGGCGTGAAGAACTGCGCGCTTTCCTG AACCAGACGCGGGTGCTGATTAATCTGCTGCCGAATACGGCCCAAACGGTAGGAATTATT AATAGCGAATTGTTGGATCAATTGCCGGATGGCGCTTACGTGCTGAATCTCGCGCGCGGC GTTCATGTTCAGGAGGCGGATCTGCTGGCTGCGCTTGATAGCGGTAAGCTAAAAGGCGCG ATGTTGGATGTCTTTAGCCAGGAACCGTTACCGCAGGAAAGTCCATTATGGCGCCATCCG CGAGTCGCCATGACGCCGCACATTGCGGCAGTCACCCGTCCGGCGGAAGCCATCGATTAT ATTAGCCGCACCATTACCCAGCTGGAGAAGGGAGAGCCGGTGACGGGGCAGGTGGATCGG GCGAGAGGATAT---ATGATGCGCGCCATGAACATACTTCTTTCTATTGCTATCACTACG GGCATCCTTTCTGGAATATGGGGATGGGTGGCCGTCTCCCTGGGGTTACTAAGCTGGGCC GGTTTTTTAGGCTGTACGGCTTATTTCGCCTGTCCGCAGGGCGGCTTTAAGGGATTGTTG ATTTCCGCCTGTACGCTGTTAAGCGGTATGGTGTGGGCGCTGGTCATTATTCACGGTAGC GCGTTGGCGCCGCATCTGGAAATTGTCAGTTACGTGTTGACGGGGATCGTGGCATTCCTG ATGTGTATCCAGGCAAAGCAGCTATTGCTTTCTTTTGTTCCGGGAACATTTATCGGCGCC TGCGCGACATTTGCAGGGCAGGGTGACTGGCGGTTGGTATTACCGTCGCTGGCGCTGGGG CTAATCTTTGGCTATGCCATGAAAAATAGTGGGCTATGGCTGGCATCACGCCGCGAGCAA CATTCAGCGAATACGGCGGTCACAAAAATGAAACGCTATCTGACCTGGATTGTAGCAGCA GAGTTACTGTTCGCTACCGGAAACCTGCATGCCAATGAAGTTGAAGTCGAGGTTCCCGGA TTGTTAACCGACCATACCGTCTCTTCGATAGGACATGAATTCTATCGTGCATTCAGCGAC AAATGGGAAAGCGAATACACCGGCAATCTGACCATTAATGAAAGACCCAGTGCGCGTTGG GGAAGCTGGATCACCATAACGGTAAATCAGGACGTTATTTTCCAGACCTTTTTATTTCCA ATGAAAAGAGACTTCGAGAAAACCGTCGTCTTCGCATTAGCGCAAACAGAGGAAGCATTA AATCGCCGACAAATAGATCAAACGCTATTAAGTACGAGTGATTTAGCGCGTGATGAATTC ATGTCCGTAATCAAGAAAAATATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATC CATTCTGCGGTAGGGCAACAAACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATT GTTGAGCCACTGTGCGATATTTCTACTCACGCCGAAAATATTGATTTAACCTGCCTACGC GAAGGTAAAAAGCAAATGCACCGGATAGACCTTCGGCAGGCATCTGGATTACCGCAGGAT ATTCAGTCCATTGCGACGGTACGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTG ATGAATATTGAGTACCGTATGACATCACGTCTTCAGGTCATACAGGGTGATATCACTCAA CTTAGCGTCGATGCGATTGTGAATGCCGCTAACGCATCATTAATGGGCGGCGGTGGCGTA GACGGCGCAATTCATCGCGCGGCGGGGCCGGCATTGCTGGACGCCTGTAAACTCATCCGT CAGCAACAGGGCGAATGTCAGACGGGACATGCGGTTATCACGCCTGCTGGCAAGCTTTCG GCAAAGGCGGTTATTCACACAGTGGGGCCCGTCTGGCGAGGCGGCGAACACCAGGAAGCT GAGCTACTCGAAGAGGCATACCGGAATTGTTTGCTGCTTGCCGAGGCGAATCACTTTCGT TCCATCGCTTTTCCGGCAATCAGTACCGGCGTTTATGGCTATCCACGCGCCCAGGCCGCT GAAGTCGCCGTCAGGACGGTTTCAGATTTTATTACCCGTTACGCTCTGCCTGAACAGGTA TACTTTGTCTGTTATGATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAA GGCGACGACCCTGCCATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAG GCGACGACCCTGCCTGATAAAACACGCCTGGAGCGTGCCGTTGAACCGCTATGCGCGCGC CATCCCGGAGAGTGCGGCATTCTTGCGCTGGATAACAGTCTGGACGCTTTTGCCGCCCGC TACCGCCTGACCGAAATGGCGGCGCGGACGCTGGATGTGCAGTATTATATTTGGGAAGAC GATATGTCCGGGCGGCTGCTCTTTTCGGTTCTGCTGTCGGCGGCGAAGCGCGGCGTTCAT GTTCGTCTGCTGCTGGATGATAACAATACGCCTGGTCTGGATGATACGTTGCGCTTGCTG GATAGCCATCCTAATATCGAAGTTCGTCTGTTTAATCCTTTCTCTTTTCGTACGCTACGC GCGCTGGGATATTTGACGGATTTTGCGCGGCTGAATCGGCGGATGCACAATAAAAGTTAC ACTGCCGACGGCGTAGTGACGCTGGTCGGTGGGCGCAACATCGGCGATGCCTATTTCGGC GCTGGCGAGGAGCCGCTATTTTCCGATCTGGACGTGATGGCCATTGGCCCGGTGGTCAAT GATGTCGCCAATGATTTTGAACGTTACTGGCGCTGTAGTTCAGTGTCGACATTGCAGCAA GTATTATCCCTTTCTGAGCAGGAACTGACGCAGCGTATCGAACTTCCCGAATCCTGGTAT AACGATGAGATCACCCGCCGTTATCTGCATAAGCTGGAAACCAGCCAGTTTATGGCGGAT CTCGATCGCGGAACGTTGCCGCTGATTTGGGCAAAAACACGCTTGCTTAGCGATGACCCT TCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTTCTTCCGCAGCGATTATTTGACGTG ATGGGGTCGCCGACGGAGCGTATCGACATTATTTCCGCTTACTTTGTCCCTACGCGCGCA GGCGTGGCGCAGTTGCTTAATCTGGTCAGGAAAGGTGTGAAGATCGCCATCTTAACTAAC TCTCTGGCGGCCAACGATGTGGCGGTCGTTCACGCAGGGTACGCGCGCTGGCGCAAGAAA TTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAACCGACCCGCGAACATGAAACCGCC GTACATGATCGCGGACTCACCGGGAACTCAGGTTCCAGCTTACATGCTAAAACGTTCAGT ATTGATGGTAGTAAGGTGTTTATCGGGTCGCTTAATTTTGATCCCCGTTCAACGCTTTTA AATACCGAAATGGGCTTTGTCATTGAAAGTGAAACGCTGGCGACGCTTATTCATAAGCGT TTTACGCAGAGCCAACGCGATGCGGCCTGGCAACTGCGGCTGGATCGCTGGGGACGAATT AACTGGATCGATCGTCAGCAAGAAGAGGAAAAGGTGTTAAAGAAAGAACCCGCTACGCGT TTCTGGCAGCGAGTTCTGGTACGGTTGGCGGCAATTTTACCTGTGGAATGGTTGCTGATG AGCTCTGTACCCGCGCCGCGTGAATATTTTCTTGACTCTATCCGCGCATGGCTGATGTTG TTAGGGATTCCCTTTCATATCTCGTTGATCTATTCCACTCACAGTTGGCATGTCAATAGC GCCGCGCCATCGTGGTGGCTAACCCTGTTTAACGATTTTATCCACGCTTTTCGTATGCAG GTGTTTTTTGTTATTTCTGGTTATTTTTCGTACATGTTATTTTTACGTTATCCATTAAAA CACTGGTGGAAAGTACGGGTAGAACGTGTGGGTATTCCCATGCTTACCGCAATCCCTTTG CTTACCTTGCCGCAATTTATCCTGTTGCAATATGTCAAAGAGAAAACAGAGAACTGGCCT ACACTCTCTGCCTATGAAAAATATAATACGTTAGCGTGGGAACTCATTTCACATCTGTGG TTTTTACTGGTGCTGGTGATATTAACCACCGTCAGCATCGGGATTTTTACCTGGTTCCAA AAAAGGCAGGAAACAAGCAAGCCTCGTCCCGCCGCTATTTCGCTGGCCAAACTTTCGCTT ATTTTTTTCCTGCTGGGGGTGGCGTACGCTGCTATCAGGCGCATTATATTCATCGTATAT CCGGCAATCCTCAGTGACGGCATGTTCAATTTTATTGTGATGCAAACGCTATTTTATGTG CCGTTTTTTATTCTCGGCGCGTTGGCCTTCATTCACCCCGATCTGAAAGCGCGCTTCACC ACGCCCTCACGCGGATGCACTTTAGGCGCTGCCGTTGCTTTTATCGCGTATCTGCTGAAT CAACGTTATGGGAGCGGCGACGCCTGGATGTACGAAACCGAATCCGTGATTACGATGGTA ATGGGGCTATGGATGGTGAACGTGGTATTTTCACTGGGGCATCGCTTGTTAAACTTTCAG TCCGCGCGTGTCACCTATTTCGTGAATGCTTCGCTGTTTATTTATCTGGTGCATCATCCC TTAACGCTTTTCTTTGGCGCGTATATTACACCGCATATCTCCTCCAACCTGATCGGGTTC TTGTGCGGGCTGATATTTGTTATGGGTATTGCGTTAATTCTGTATGAAATTCATTTACGC ATCCCGCTCCTGAAATTTCTCTTTTCAGGTAAACCGCCGGTAAAACAAGAAAGCCGCGCC GCGATCGGGATGAAACATAAACGACAAATGATGAAAATGCGTTGGTTGGGCGCAGCTATT ATGTTAACGCTCTACGCATCATCGAGCTGGGCGTTCAGTATTGATGACGTGGCAAAACAA GCTCAATCTTTAGCCGGGAAAGGCTATGAGGCGCCTAAAAGCAACTTGCCCTCCGTTTTC CGCGACATGAAATATGCGGATTATCAGCAGATCCAGTTTAACAGCGATAAAGCCTACTGG AACAACTTAAAGACCCCTTTTAAGCTCGAATTTTACCATCAGGGGATGTACTTCGATACG CCGGTCAAGATTAACGAAGTGACGGCGACGACGGTCAAAAGAATCAAATACAGCCCGGAT TACTTCAATTTTGGCAATGTTCAGCACGATAAAGACACGGTAAAAGATTTAGGCTTCGCC GGGTTCAAAGTCCTGTACCCCATTAACAGTAAAGATAAGAACGACGAAATCGTCAGTATG CTTGGCGCCAGCTATTTCCGCGTTATCGGCGCAGGCCAGGTGTATGGCTTATCTGCGCGC GGCCTGGCGATTGATACCGCCTTACCATCTGGTGAAGAGTTTCCCCGCTTTCGCGAGTTC TGGATTGAGCGTCCAAAACCCACCGATAAGCGTTTGACCGTCTATGCATTACTGGATTCT CCGCGCGCGACCGGCGCTTACCGTTTTGTGATCATTCCTGGCCGCGATACCGTGGTGGAC GTGCAGTCAAAAGTCTATCTGCGCGATAAGGTGGGCAAGCTGGGCGTTGCGCCATTAACC AGTATGTTCCTGTTTGGGCCAAACCAGCCGTCGCCGACGACCAACTATCGTCCGGAATTG CATGACTCGAACGGCTTATCCATTCATGCGGGTAATGGCGAGTGGATTTGGCGTCCGCTG AACAATCCAAAACACCTCGCTGTGAGCAGCTATGCGATGGAAAACCCTCAGGGATTCGGC CTGTTGCAGCGTGGTCGCGAGTTCTCGCGCTTTGAAGATTTAGACGATCGCTATGACCTG CGTCCAAGCGCCTGGATTACCCCGAAAGGCGACTGGGGCAAAGGTAAGGTTGAACTGGTT GAAATTCCGACCAATGATGAAACCAACGATAACATCGTCGCTTACTGGACTCCGGATCAA CTGCCGGAACCGGGTAAAGAGATGAACTTCAAGTACACTCTGACCTTCAGCCGCGATGAA GATAAACTTCATGCGCCGGATAATGCCTGGGTGCTGCAAACACGCCGCTCAACGGGCGAC GTTAAACAGTCGAATCTGATTCGCCAGCCCGACGGCACTATTGCCTTTGTGGTGGATTTC GTTGGCGCCGACATGAAAAAACTGCCGCCGGATACGCCCGTCGCTGCACAAACCAGCATT GGCGATAACGGTGAAATCGTTGACAGTAATGTACGCTATAACCCAGTCACTAAAGGCTGG CGTTTAATGCTGCGCGTGAAAGTCAAAGACGCGAAGAAAACCACGGAAATGCGTGCCGCA TTGGTGAATGCCGATCAGACGCTAAGTGAAACCTGGAGCTACCAGTTACCTGCCAATGAA ATGAATAAAACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCA TTGCCGAAAACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTAC TCGCGAGAAGACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCG GATTCATTGGCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCT ATGCCAAAAGCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGC CGTTTCTGGGATCGCCTGCGTGGGCGGGATGTAACGCCGCGCTATGTTTCTCGTCTGACA AAAGAAGAGCAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATT TTGTTAATTTTGACTCTGGCGCAAACCGTCGTCGCGACCTGGTATATGAAGACCATTCTG CCCTATCAGGGATGGGCGCTCATCAATCCTATGGATATGGTGGGGCAGGATATTTGGGTC TCCTTTATGCAGCTCCTGCCCTACATGCTGCAAACCGGTATCCTGATTTTGTTTGCCGTG CTGTTCTGCTGGGTGTCTGCCGGATTCTGGACGGCGCTGATGGGCTTCCTGCAACTGCTT ATCGGGCGCGATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCG GAACACCAGACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCC GGTCTGCGCGCGACCTGGGAGTCCGTTAAAGCCACAGGCAACGCCGCGCATTTTGACGTC TATATCCTTAGCGATAGTTATAACCCGGATATCTGCGTGGCGGAGCAAAAGGCGTGGATG GAGCTCATCGCGGAAGTGCAGGGCGAAGGCCAAATTTTTTACCGTCGCCGCCGCCGCCGT ATGAAACGCAAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGC TATATGGTGGTGCTGGACGCGGACTCAGTGATGAGCGGCGAGTGTCTGAGCGGGCTGGTG CGCCTGATGGAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGG ATGGATACTCTGTATGCCCGCTGCCAACAGTTCGCGACCCGTGTTTATGGACCGCTGTTT ACCGCCGGGCTGCACTTCTGGCAGTTGGGGGAGTCGCACTACTGGGGGCACAATGCCATT ATCCGCGTGAAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCG TTCGCCGGATCGATTCTTTCCCACGACTTTGTGGAGGCGGCGCTAATGCGTCGGGCAGGG TGGGGCGTCTGGATTGCCTACGATCTCCCCGGCTCCTATGAAGAGCTGCCGCCAAACCTG CTGGATGAGCTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTG TTCCTGGTGAAAGGAATGCACCCGGTGCATCGCGCCGTGTTCCTGACCGGGGTAATGTCA TACCTGTCCGCGCCGTTATGGTTTATGTTCCTCGCGCTTTCTACCGCGCTGCAGGTCGTT CATGCGTTAACAGAGCCGCAATATTTCCTTCAGCCGCGCCAGCTTTTTCCGGTCTGGCCG CAGTGGCGTCCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTG CCGAAGCTGCTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTC TGGCGCGTTACGCTGTCGCTATTGCTGGAAGTGCTGTTCTCCGTGTTGCTGGCGCCGGTG CGTATGCTGTTTCATACCGTGTTTGTGGTCAGCGCGTTCCTCGGCTGGGAAGTGGTCTGG AACTCACCGCAACGCGACGATGATTCTACGCCGTGGGGAGAAGCCTTTATGCGTCACGGC TCTCAACTGCTGCTGGGGCTGGTCTGGGCGGTGGGTATGGCGTGGCTGGATTTACGCTTT CTGTTCTGGCTGGCGCCGATTGTCTTTTCGCTGATTCTGTCGCCATTTGTTTCGGTGATC TCCAGTCGTTCAACGGTAGGATTACGCACCAAACGCTGGAAGCTGTTCCTGATCCCGGAA GAGTATTCGCCGCCTCAGGTGTTGGTCGATACCGATAAATATCTGGAGATGAATCGCCGC CGTATTCTGGACGATGGCTTTATGCATGCGGTATTTAACCCGTCGCTTAATGCGCTGGCG ACCGCGATGGCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGT CATGTGGAGCAGGCGCTAAACGAAACGCCGGAGAAACTGAACCGCGATCGGCGTCTGGTT TTGCTCAGCGATCCGGTGACGATGGCGCGTTTACACTATCGGGTCTGGAATGCGCCAGAG AGATACTCTTCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAG GGACGAACATCGTCAGCGGGAGTGCGTATATTCGCGGTGAGCATAATGGTGATTACCCTG AGCGGCTGCGGCAGTATTATCAGCAGAACGATCCCCGGACAAGGACACGGCAACCAGTAT TACCCTGGCGTGCAGTGGGATATGCGTGATTCCGCATGGCGCTATATCACTATCCTCGAT CTGCCCTTCTCACTGATCTTCGATACACTGCTACTGCCGCTCGATATTCACCACGGGCCT TATGAGATGAAAAAAAACCTGCTGGGATTCACCCTCGCATCCTTGTTATTCACGACCGGT TCCGCCGTGGCGGCGGAGTATAAAATTGATAAAGAAGGCCAACATGCGTTCGTCAATTTC CGCATCCAGCATCTGGGCTACAGCTGGCTATACGGCACCTTTAAAGATTTCGACGGCACG TTCACTTTTGACGAAAAAAATCCGTCAGCAGACAAAGTGAATGTGACCATTAACACCAAT AGCGTCGACACTAACCATGCCGAACGTGACAAACACCTGCGTAGCGCGGAGTTTCTTAAT GTTGCGAAATTCCCGCAGGCAACCTTCACCTCTACCAGCGTGAAAAAAGAGGGCGATGAA CTGGATATTACCGGCAATCTGACGCTCAATGGCGTGACTAAACCGGTGACGCTGGAAGCG AAGCTGATGGGCCAGGGCGACGATCCGTGGGGCGGTAAGCGCGCGGGCTTTGAGGCCGAA GGAAAAATTAAGCTGAAAGATTTCAATATAACTACCGATCTCGGCCCAGCCTCACAAGAG GTGGAGCTTATCATCTCAGTAGAAGGCGTTCAGCAGAAGATGTTACTGATGATGGCGCTG ATCGTGCGTATTATCTGGCGGCTTTATTCTCCGCCGCCCGTTGCGTTGACCAGCTATTCC CGTTTAACGCGCATTGGCGCCGCCGCGGGTCATATCCTTCTGTATCTCCTGCTCTTTGCG ATAATCATTAGCGGCTACCTGATTTCCACCGCCGACGGTAAACCGATTAGCGTCTTTGGC TGGTTTGAGATTCCGGCCACGCTTACGGACGCGGGCGCGCAGGCTGACATCGCCGGAACA CTGCATCTGTGGTTTGCCTGGTCGCTGGTCATTATCTCGCTCTCGCATGGGGTTATGGCG CTAAAACACCATTTCATCGATAAAGACGACACACTGAAACGTATGACAGGAATGTCGTCA TCTGACTATGGAGCTCAAAAAATGAAATACGACCTTATTATTATCGGCAGCGGTTCGGTT GGCGCCGCCGCTGGTTATTACGCCACCCGCGCCGGGCTAAAGGTCCTGATGACCGATGCG CATATGCCGCCTTATCAACAGGGCAGCCACCACGGCGATACCCGTCTTATCCGCCACGCT TATGGTGAAGGCGAAAAATATGTCCCGCTGGTGCTTCGCGCCCAGACGCTTTGGGATGAG CTCTCCACACACAATGAAGAGCCTATTTTTGTCCGCTCCGGCGTCGTCAACCTCGGCCCG GCCGATTCCGCTTTCTTAGCCAACGTCGCACGAAGCGCGCAACAGTGGCAATTGAACGTC GAGCGCCTGGACGCGACGGCCCTCATGACGCGCTGGCCGGAAATTCGCGTGCCCGATAAT TATATCGGGCTGTTTGAAGCTGACTCCGGTTTCCTGCGCAGCGAATTAGCCATTACCACA TGGCTTCGTCTGGCCCGAGAGGCAGGCTGCGCACAGCTATTCAACAGCCCGGTAAGCCAT ATTCACCATGATGATAACGGTGTGACGATAGAGACGAGTGAAGGCTGCTACCACGCCAGC AAAGCGCTGATTAGCGCGGGCACCTGGGTCAAAACGCTGGTACCGGAGCTGCCCGTTCAG CCCGTACGTAAAGTTTTTGCCTGGTTTAAGGCGGATGGACGTTACAGCACTAAAAACCGC TTTCCGGCCTTTACCGGCGAAATGCCCAACGGCGATCACTATTACGGTTTCCCGGCGGAG AACGACGAGTTAAAAATCGGCAAACACAATGGCGGGCAGCGAATACAGGCACCGGAAGAG CGCAAGCCCTTTGCCGCCGTTGCCAGCGATGGCGCGGAAGCATTTCCTTTCCTGCGTAAC GTACTGCCGGGTATCGGCGGTTGTTTACATGGGGCGGCATGTACCTATGATAATTCGCCG GACGAGGATTTTATTATCGATACGCTGCCTGGCCATGAGAATACGCTTGTCATCACTGGA CTCAGCGGACATGGTTTTAAATTCGCCCCGGTGTTAGGAGAAATCGCTGCGGATTTTGCG TTGGGAAAAACGCCCTCCTTTGATCTGACGCCGTTCCGGCTTTCCCGTTTTAGCCAAATG GAAAAGAATAATGAAGTCATTCAGACCCATCCGCTTGTAGGATGGGACATCAGCACCGTC GATAGCTATGATGCGCTGATGCTGCGTTTACACTACCAGACCCCAAATCGTCCGGAACCG GAAGGGACTGAAGTTGGTCAAACGCTCTGGTTAACGACAGATGTAGCCAGGCAATTTATT TCAATATTAGAAGCCGGCATCGCCAAAATAGAATCAGGCGATTACCAGGAAAACGAGTAT CGTCACCAT >22222_2#22 ATGCGTATCAGTACCCAGATGATGTACGAACAAAATATGAGCGGCATCACTAATTCTCAG GCCGAATGGATGAAGCTGGGCGAGCAGATGTCTACCGGTAAGCGCGTTACCAACCCATCT GACGATCCGATCGCCGCGTCGCAGGCGGTAGTACTCTTTCAGGCGCAGGCGCAGAATAGC CAGTACGCCCTGGCGCGTACGTTTGCCACCCAAAAAGTGTCGCTGGAAGAAAGCGTACTC AGTCAGGTGACGACGGCGATTCAAACCGCGCAGGAAAAAATCGTCTATGCCGGAAACGGC ACGTTAAGCGACGATGACCGCGCGTCGCTGGCGACGGATTTACAGGGGATCCGCGATCAG CTGATGAACCTGGCAAACAGCACTGACGGCAATGGTCGCTATATCTTTGCCGGGTATAAA ACGGAAGCGGCGCCATTCGACCAGGCGACAGGTGGTTATCATGGCGGCGAGAAAAGTGTT ACCCAGCAGGTGGATTCCGCACGCACGATGGTAATTGGCCATACGGGAGCGCAAATTTTT AATAGCATCACCAGCAATGCGGTGCCGGAACCGGATGGCTCGGACTCCGAAAAGAATCTG TTTGTCATGCTCGATACGGCAATTGCCGCGCTCAAGACCCCGGTGGAAGGCAATGACGTG GAAAAAGAAAAAGCCGCTGCCGCCATTGATAAAACCAATCGCGGCTTAAAAAATTCGCTT AATAACGTCCTGACCGTTCGTGCGGAACTGGGAACGCAACTGAGCGAACTCAGTACGCTG GATTCACTGGGAAGCGACCGTGCGCTGGGACAGAAGCTACAGATGAGCAACCTGGTAGAT GTGGACTGGAACTCGGTCATTTCCTCCTACGTCATGCAACAGGCGGCATTACAGGCGTCC TATAAAACGTTTACCGACATGCAGGGAATGTCGCTTTTCCAGTTGAACCGGATGTCCAGC TTGATTAATCACGCCATGAGCGGACTTAACGCCGCGCAGGCCGCGTTAAATACGGTCAGT AATAACATCAACAATTATAACGTTGCGGGTTATACCCGGCAGACAACTATTCTGGCGCAG GCAAACAGTACGTTAGGGGCTGGCGGCTGGATAGGTAATGGCGTTTACGTTTCAGGCGTA CAGCGCGAATATGATGCGTTTATCACTAATCAGCTACGCGGCGCGCAAAACCAGAGCAGC GGCTTAACCACGCGCTATGAACAAATGTCGAAAATCGACAACCTGCTGGCCGATAAATCC AGCTCACTGTCTGGCTCGCTGCAGAGTTTTTTTACCAGCCTGCAAACGTTAGTCAGTAAT GCGGAAGATCCTGCGGCGCGTCAGGCGCTGATTGGTAAAGCGGAAGGGCTGGTAAACCAG TTCAAAACCACCGATCAGTATCTGCGCGATCAGGATAAACAGGTCAATATCGCGATTGGC TCCAGCGTGGCGCAAATCAACAATTACGCGAAGCAGATAGCTAACCTGAACGATCAAATC TCCCGTATGACGGGCGTAGGCGCGGGCGCATCGCCGAACGACCTGCTCGATCAACGTGAT CAGTTGGTTAGCGAGCTTAACAAGATCGTTGGCGTCGAGGTGAGTGTACAGGACGGCGGC ACCTATAACCTGACGATGGCCAATGGCTATACGCTGGTGCAGGGGTCGACGGCGCGTCAG TTGGCGGCGGTTCCCTCCAGCGCCGACCCGACGCGAACGACTGTCGCTTATGTCGATGAG GCCGCCGGTAACATCGAAATTCCGGAAAAGTTGCTGAACACCGGTTCGCTCGGCGGGCTA CTGACGTTCCGTTCTCAGGATCTGGATCAGACTCGTAATACGCTGGGCCAGTTGGCGTTG GCGTTTGCCGATGCGTTTAACGCGCAGCATACCAAAGGTTATGACGCCGACGGCAATAAA GGGAAAGACTTCTTTAGCATTGGCTCGCCGGTGGTATATAGCAACAGTAATAATGCCGAT AAAACGGTATCGCTAACCGCTAAGGTGGTCGACAGCACGAAGGTTCAGGCGACGGATTAT AAGATTGTTTTTGACGGTACAGACTGGCAGGTTACTCGCACTGCGGATAACACCACCTTC ACGGCAACAAAAGATGCTGACGGAAAACTGGAGATTGACGGTCTGAAAGTGACGGTAGGG ACTGGCGCACAGAAAAACGACAGTTTTCTTCTCAAGCCGGTCAGCAATGCTATCGTCGAC ATGAACGTTAAAGTGACAAATGAAGCCGAGATTGCGATGGCGTCTGAGTCAAAACTCGAT CCTGATGTGGATACCGGCGACAGCGATAACCGCAATGGTCAGGCATTGCTGGACTTACAA AACAGCAATGTAGTGGGCGGCAACAAAACCTTTAACGATGCTTACGCCACGTTGGTCAGC GATGTGGGTAACAAAACGTCAACGCTGAAAACCAGCAGCACCACGCAGGCGAATGTGGTT AAACAGCTTTATAAACAGCAACAGTCGGTTTCCGGCGTTAACCTCGACGAAGAGTACGGC AATTTGCAGCGTTATCAGCAGTATTATCTGGCGAATGCGCAAGTATTGCAGACCGCGAAT GCGCTGTTTGATGCGTTATTGAATATTCGCATGATCGGAGACGGTAAATTGCTGGCCAGC GCGGCCTGGGATGCGCAATCTCTGAACGAACTGAAAGCGAAAGCGGGCCAGGACCCGGCG GCGAATATCCGTCCTGTGGCCCGTCAGGTGGAAGGGATGTTTGTGCAGATGATGCTGAAA AGTATGCGCGAGGCTTTACCCAAAGATGGTTTATTCAGCAGCGATCAGACGCGTCTGTAT ACCAGCATGTATGACCAGCAGATCGCCCAGCAGATGACCGCCGGTAAGGGATTGGGGCTG GCGGATATGATGGTTAAACAGATGACGGGCGGGCAGACGATGCCTGCAGATGATGCGCCG CAAGTACCGCTTAAATTCTCCCTGGAGACGGTAAACAGCTATCAAAATCAGGCGCTGACC CAACTGGTGCGCAAAGCCATACCGAAAACGCCGGACAGCAGCGATGCGCCGCTCTCCGGC GACAGTAAAGACTTTCTGGCCCGGCTTTCGCTCCCGGCGAGGCTGGCCAGCGAACAAAGC GGGGTGCCGCATCATCTGATTCTGGCGCAGGCGGCGCTGGAGTCCGGCTGGGGGCAGCGG CAAATCCTGCGGGAGAATGGCGAACCCAGCTATAACGTATTTGGCGTGAAAGCGACCGCC AGTTGGAAAGGGCCGGTGACGGAAATCACCACCACTGAATACGAAAATGGCGAAGCGAAA AAAGTGAAAGCGAAATTCCGCGTCTATAGCTCGTATCTGGAGGCGTTATCGGATTATGTC GCGCTGTTAACGCGTAACCCACGCTACGCTGCCGTGACCACTGCCGCCACGGCAGAGCAG GGCGCAGTGGCTCTGCAAAACGCCGGATACGCCACTGACCCGAATTACGCGCGTAAATTG GCCAGCATGATTCAGCAGTTGAAAGCGATGAGTGAAAAGGTCAGCAAAACCTACAGCGCG AATCTCGACAATCTCTTTGTGTTTAAAGCTCTTGCAGGAATCGTTCTGGCACTGGTTGCC ACTCTGGCGCACGCCGAGCGTATCCGGGATCTGACCAGTGTCCAGGGAGTACGGGAAAAC TCGCTGATCGGCTACGGGCTGGTGGTCGGGCTGGACGGTACGGGCGACCAGACGACCCAG ACGCCATTTACCACCCAGACGCTGAATAACATGCTGTCACAACTGGGGATTACGGTCCCC ACCGGCACCAATATGCAGTTGAAAAACGTGGCGGCGGTGATGGTGACGGCGTCGTATCCG CCTTTTGCGCGACAGGGACAAACGATCGATGTCGTCGTTTCCTCAATGGGGAACGCTAAA AGTCTGCGTGGCGGGACGTTATTAATGACGCCGTTAAAAGGGGTGGACAGCCAGGTGTAT GCTCTGGCGCAGGGCAATATTCTGGTCGGCGGCGCGGGCGCTTCCGCAGGCGGCAGTAGC GTGCAGGTTAACCAGCTTAATGGCGGGCGCATCACTAATGGCGCGATTATCGAACGCGAG TTGCCGACTCAGTTCGGCGCTGGCAACACCATTAATCTGCAATTGAACGACGAAGATTTT ACGATGGCGCAGCAAATTACCGACGCCATCAACCGCGCCCGCGGTTACGGCAGCGCCACT GCGCTTGATGCGCGAACGGTACAGGTACGCGTGCCCAGCGGCAACAGCTCGCAGGTGCGT TTTCTGGCGGACATTCAAAATATGGAAGTCAACGTGACGCCGCAGGATGCAAAAGTCGTG ATCAACTCGCGTACCGGTTCGGTGGTCATGAATCGGGAAGTCACGCTGGATAGCTGCGCT GTGGCGCAGGGCAATTTGTCAGTGACAGTCAATCGCCAACTCAACGTCAACCAGCCGAAT ACGCCATTTGGCGGCGGGCAGACCGTGGTGACGCCACAGACTCAGATAGATTTGCGTCAG AGCGGCGGATCGCTACAGAGCGTGCGTTCCAGCGCCAATCTGAACAGCGTAGTGCGCGCG CTGAATGCGCTTGGCGCGACGCCGATGGATCTGATGTCGATTTTGCAGTCCATGCAGAGC GCGGGCTGTCTACGCGCCAAACTGGAAATCATCATGGCCCTGATGGTCGCGACGCTGACA GGATGCGCCTGGATACCCGCTAAACCGCTCGTGCAGGGGGCGACCACGGCGCAGCCGATA CCTGGCCCGGTACCGGTGGCGAATGGCTCCATATTTCAGTCTGCGCAGCCGATTAATTAT GGCTATCAGCCGCTTTTTGAAGATCGTCGACCGCGTAATATCGGCGATACGCTCACGATT GTGTTACAGGAAAACGTCAGCGCCAGTAAAAGCTCGTCGGCAAATGCCAGCCGCGACGGC AAAACCAGCTTTGGTTTTGATACGGTACCGCGTTATCTGCAGGGATTATTCGGTAATTCC CGCGCGGATATGGAGGCCTCCGGCGGCAACTCTTTTAATGGTAAAGGCGGCGCGAATGCC AGCAATACCTTTAGCGGCACGCTGACCGTGACCGTCGATCAGGTTCTGGCCAATGGCAAT TTACACGTCGTGGGGGAAAAACAGATCGCGATTAATCAGGGAACGGAATTCATCCGCTTC TCCGGCGTGGTAAATCCACGCACCATCAGCGGTAGCAACTCTGTTCCCTCGACACAGGTG GCGGATGCGCGGATTGAATATGTCGGGAACGGCTATATTAACGAAGCGCAAAATATGGGC TGGCTGCAACGTTTCTTCCTTAATTTGTCGCCGATGATGATCAGTTCATTATGGATCGCC AAAACCGGTCTGGACGCGCAGCAAACCAATATGGATGTGATTGCCAATAACCTGGCAAAC GTCAGCACCAATGGTTTTAAGCGTCAGCGCGCGGTATTTGAAGATCTGTTGTATCAGACC ATCCGCCAGCCGGGCGCGCAGTCGTCCGAGCAGACGACGCTGCCTTCCGGGCTGCAAATC GGTACCGGCGTGCGTCCGGTCGCCACGGAGCGCCTGCACAGTCAGGGGAACCTGTCGCAG ACCAACAACAGTAAAGATGTGGCGATTAAAGGGCAGGGCTTTTTCCAGGTCATGCTGCCG GACGGTACGTCTGCCTATACCCGCGACGGCTCTTTCCAGGTGGATCAGAATGGTCAACTG GTGACGGCGGGCGGTTTTCAGGTGCAGCCGGCAATCACCATTCCGGCCAACGCGTTAAGC ATCACGATTGGCCGCGACGGCGTGGTCAGCGTTACCCAGCAAGGGCAGGCCGCGCCGGTT CAGGTCGGGCAGCTTAACCTGACCACCTTTATGAACGACACCGGTCTGGAAAGCATCGGC GAGAACCTCTATATCGAAACGCAATCGTCCGGCGCGCCGAACGAAAGCACGCCGGGGCTC AACGGCGCGGGGTTGTTGTATCAAGGGTATGTCGAAACGTCGAACGTTAACGTGGCGGAA GAGCTGGTGAACATGATTCAGGTTCAACGCGCCTATGAAATTAACAGTAAAGCAGTATCG ACGACCGATCAGATGCTGCAGAAACTGACGCAACTCATGGATCACGCAATTTATACCGCC ATGGGGGCGGCCAGCCAGACGCTTAACCAGCAGGCGGTAACGGCCAGCAACCTGGCTAAT GCCTCAACGCCGGGCTTTCGCGCGCAGCTTAACGCGCTACGCGCGGTGCCCGTTGATGGC CTCTCTTTAGCGACGCGCACGTTGGTTACGGCGTCGACGCCGGGGGCGGATATGACCCAG GGTCAGTTGGACTACACTTCCCGCCCGCTGGATGTTGCGTTACAGCAGGACGGCTGGCTG GTGGTGCAAGCGGCGGATGGCGCTGAAGGATATACCCGTAACGGGAATATCCAGGTGGGC CCGACCGGGCAGTTAACCATTCAGGGACATCCGGTTATCGGCGAAGGCGGCCCGATTACC GTTCCGGAAGGGTCGGAAATCACCATTGCGGCAGACGGCACGATCTCCGCGCTCAATCCC GGCGACCCGCCAAACACGGTGGCGCCCGTTGGGCGGCTGAAGCTGGTCAAAGCGGAAGGC AATGAGGTGCAGCGGAGCGATGACGGTTTATTCCGCCTTACCGCCGAGGCACAGGCTGAA CGCGGGGCGGTACTGGCCGCCGACCCGTCAATTCGCATTATGTCGGGCGTGCTGGAGGGC AGTAACGTCAAGCCGGTTGAAGCCATGACCGACATGATCGCCAACGCACGTCGTTTTGAA ATGCAGATGAAGGTTATCACCAGCGTAGATGAGAACGAAGGGCGAGCTAACCAACTGCTG TCGATGAGTATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTGCGGCCACCAACCTT GATGTTATCGGTAATAACATCGCCAACTCCGCCACCTATGGCTTTAAGTCCGGTACGGCA TCATTTGCCGATATGTTCGCCGGTTCCAAAGTGGGGTTGGGCGTAAAAGTGGCGGGGATT ACCCAGGATTTTACCGACGGTACGACAACGAACACCGGGCGCGGGCTGGATGTCGCGATT AGCCAGAACGGTTTTTTCCGCCTGGTAGACAGCAACGGTTCCGTGTTCTATAGCCGCAAC GGCCAGTTCAAACTGGACGAGAACCGTAACCTGGTCAATATGCAGGGGATGCAGTTGACC GGCTATCCGGCCACCGGTACGCCGCCGACCATTCAGCAGGGGGCGAATCCTGCGCCGATC ACCATTCCGAACACGCTGATGGCGGCGAAATCGACCACCACCGCGTCAATGCAGATCAAC CTGAACTCAACGGACCCTGTACCGTCTAAAACGCCCTTTAGCGTGAGTGATGCGGATTCG TATAACAAAAAAGGCACCGTCACCGTTTATGACAGCCAGGGTAATGCCCATGACATGAAC GTCTATTTTGTGAAAACCAAAGATAATGAATGGGCTGTGTACACCCATGACAGCAGCGAT CCTGCAGCCACTGCGCCAACAACGGCGTCCACTACGCTGAAATTCAATGAAAACGGGATT CTGGAGTCTGGCGGTACGGTGAACATCACCACCGGTACGATTAATGGCGCGACAGCGGCC ACCTTCTCCCTCAGCTTCCTTAACTCCATGCAGCAGAACACCGGGGCTAATAACATCGTC GCCACCAATCAAAACGGCTATAAGCCTGGCGACCTGGTGAGCTACCAGATTAACAATGAT GGCACCGTGGTTGGCAACTACTCCAACGAGCAGGAGCAGGTGCTGGGGCAGATTGTGCTG GCTAACTTCGCCAACAACGAAGGTCTGGCATCCCAGGGCGATAACGTCTGGGCGGCGACG CAGGCCTCCGGGGTAGCGCTGCTGGGGACTGCCGGTTCCGGCAACTTCGGTAAGCTGACG AACGGCGCGCTGGAAGCCTCTAACGTGGATTTGAGTAAAGAGCTGGTGAATATGATCGTC GCGCAGCGTAACTACCAGTCGAATGCGCAGACCATCAAAACCCAGGACCAGATCCTCAAT ACGCTGGTTAACCTGCGCATGTCTATTGCCGTAAATATGAATGACCCGACCAACACGGGC GTCAAAACGACGACCGGCAGCGGGTCGATGACCGGAAGCAACGCTGCCGATCTGCAAAGC AGTTTCCTGACCTTACTGGTCGCGCAATTGAAGAACCAGGACCCGACTAACCCATTACAA AATAATGAGTTAACGACACAGTTGGCGCAAATCAGTACCGTGAGCGGCATTGAAAAACTG AATACGACGCTGGGGGCTATTTCCGGGCAAATCGATAATAGTCAGTCCCTACAGGCGACC ACGCTGATTGGACATGGCGTTATGGTGCCTGGCACCACAATTCTGGCGGGTAAAGGCGCG GAAGAAGGGGCCGTGACGTCCACGACGCCGTTTGGCGTGGAATTGCAACAGCCTGCGGAC AAAGTGACGGCAACCATTACCGATAAAGATGGCCGGGTGGTACGGACGCTGGAGATCGGT GAGTTGCGAGCCGGGGTACACACCTTTACCTGGGATGGTAAGCAAACGGACGGAACAACG GTACCGAATGGTTCTTACAACATTGCGATTACCGCCAGCAATGGCGGGACGCAACTGGTG GCGCAGCCGCTGCAATTCGCTCTGGTACAGGGCGTGACGAAGGGCAGTAACGGCAACCTG TTGGATCTGGGTACCTACGGCACCACCACACTCGACGAAGTTCGGCAAATAATCATGCAA ATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGCCTACAA AAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCTAAAGCG CCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGGAATTAT CTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAGCGCGAT CTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCAATGGCA AACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAAGAAGCT GCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAGCAGCAA AATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGATGCTCAG GTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCATAACGGG CATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAAGATATC TTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATTCATCAC GCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAAACGCTT TTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTTCTGCGT CAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGTAAACCT GAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCCGTCGGG TTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAAATGCGC GCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAATAAAGAT GGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGTGTTAAT GAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCCGAAGCG CTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGGGTTGGC GAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGCCAGATT AAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAACTCGCA CAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGTAAAAGC GGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCTTTCCAT CAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAAATTTTC CAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGCGGGGCG GGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAAAAACGA GTTGGGGATGATAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACATCTATG AAAAAGTATCTTGCTTTCGCCGTTACGCTGCTGGGTATGGGTAAAGTCATCGCCTGTACT ACCCTTTTGGTAGGCAATCAGGCTTCGGCTGACGGCTCCTTTATTATCGCGCGCAACGAG GATGGCTCGGCAAATAACGCCAAGCATAAGGTTATTCATCCCGTCGCGTTTCATCAACAA GGCGAGTATAAAGCACATCGCAACAATTTTAGCTGGCCGCTTCCGGAGACAGCGATGCGC TATACGGCGATTCATGACTTTGATACTAACGATAACGCCATGGGTGAAGCCGGTTTCAAT TCGGCGGGCGTCGGAATGAGCGCAACGGAAACCATTTACAACGGCAGAGCGGCGCTGGCT GCCGATCCTTACGTGACAAAAACGGGAATCACGGAAGACGCCATTGAGTCCGTGATCCTG CCAGTGGCGCAATCGGCGCGTCAGGGCGCCAAATTACTGGGAGATATTATTGAACAAAAA GGCGCGGGCGAAGGTTTCGGCGTCGCGTTTATTGATAGCAAAGAGATATGGTATCTGGAG ACGGGAAGCGGACATCAATGGCTGGCAGTACGACTTCCGGCAGATAGCTATTTCGTTTCC GCCAATCAGGGACGTTTACGCCATTACGATCCGAATGATAACGCGAATTATATGGCGTCA CCAACGTTAGTAAGCTTTGCGAAAAAGCAGGGATTATATGATCCGGCCCGCGGCGAATTC GACTTTCATCAAGCCTATTCGCAGGATAACAAAAACGATACCACCTATAATTATCCGCGC GTCTGGACGCTACAACACCAGTTTAATCCGCATCTGGATACGGTCGTTAGCGAAGGGGAA ACATTTTCTGTTTTTTTAACGCCAATAACGAAGATCAGCGTGGCGGCAGTAAAAAACGCG TTACGCAATCACTATCAGGGAACGTCGCACGACCCTTATGCCAGTCATAATCCACAAGAA CCATGGCGACCTATATCCGTTTTTCGTACCCAGGAGTCACATATTTTACAGGTCAGACCG AAATTACCGCAGGCTATCGGCAACGTAGAATACATCGCCTATGGAATGCCATCTCTTAGC GTCTATCTCCCCTATTACCAGGGGATGCGTCATTATCAACCCGGAGATGATAAAGGAACC GATCGGGCGAGCAACGACTCTACCTACTGGACATTCCGCACGCTGCAAACACTGGTTATG CAAGACTACAATACGTTTGCGCCAGATGTGCAACATGCCTGGAAAACATTTGAACAGCAA ACAGCTAAGCAACAGTATAAGATGGAGCAGAGCTATCTGAGATTATATGCGTCGCATCCG AAAGAAGCACAACGCTTACTGCAAAATTTTGAAGATAAAACGATGCAAAATGCGCAGACG CTCGCCCGTCGCCTGACCAATAATATTATTACGACAATGACTTACCGCACAGATATGAAA TATCACTTTTCAAGTACGCAGCCAATGGTTAAGTTATCAATGACGCTGCGCCTGACAATT TCTTTTATCGCCATACTTATCCTCGCCTGTACCGGCATTAGCTGGACGCTCTATAACGCG CTGAGCAAAGAATTAACGTATCGGGATGATATGACGCTAATAAATCGGGCGGCGCAAATG CAGCAACTGTTACTGGATGGCGCCAGGCCGGAAAATCTGCCGCTCTATTTCAATCGGATG GTGGATACGAAGCAGGATATCTTATTGATCCACTCAGCAACAGGCCATAATGTTGCGATT AATCATAGCGGCATCCCCGACCAACGCTTTAACGAGATTCCGCTGGCTAAAAACATCACC CGCGAAACCTTATTTCGCCAGGCGGTACAAGGCACGGAGCTGACCGCGGTACGAGTAAAC GCCAGAAGCGGCGATAACCCGCTGACCCTTACTATTGCCAGGCTGGCGACGGAAAGGCGG CAAATGCTGGCGCAATATCGCCGCAACAGTTTGCTGATTAGCCTTATCGCGATCCTCGTC TGTTCGGCGCTCAGTCCATTAGTCATCAGAAACGGGCTGCGGGCCATTACGTCGCTCAGC CGACTCACCGCGGCGACAGATAGCGGCACACTTCGCCAGCCGCTGGCGGAACAGGCGTTA CCCGTCGAGCTCAGGCCGCTTGGGCAAGCGCTAAATACCATGCGCCAGAAGCTTTCCGAC GATTTTGAACGCCTGAACCAATTTGCCGACGATCTGGCGCATGAGCTGCGCACGCCGGTT AATATTTTACTGGGGAAGAATCAGGTTATGCTGAGTCAGGAACGCAGCGCCGAAGAGTAT CAACAAGCCCTTGTCGATAATATTGAAGAGCTGGAGGGACTGTCGCGACTGACAGAAAAT ATTCTCTTTCTGGCACGCGCGGAGCACCAGAATATAGCGGTAAAAAAACAGCCTGTTTCG CTCAATGCGCTGGTCGAAAATATGCTGGATTATCTTAGCCCCCTTGCCGAAGAGAAGCAC ATCTGTTTTATAAATCAATGTCAGGGAACGGTATGGGCTGACGAAATATTATTACAAAGA GTGCTCTCAAACCTGCTGACGAATGCCATCCGTTATTCTGATGAAAACGCCGTGATACGT ATTGAAAGCGCTTATGATGATAACGTTGCAGAAATTCGGGTCGCTAATCCGGGCAGCCCC ACCGCCGATGCGGATAAGCTTTTCCGGCGTTTTTGGCGAGGAGATAATGCCCGCTACACT GCCGGTTTCGGCCTGGGGTTATCGTTAGTTAACGCGATTGCCCTATTGCACGGTGGCTCG GCATCTTACCGCTATGCCGATGAACATAATATCTTTTCGGTTCGTCTGCCTGATAGCGGT GATAGCATGTCATCTTGTTGGAGATTTACGGATTCGCTAACAAGCCTATGGCATACTGCG TTGATGAAGATTTTATTGATTGAAGATAACCAGAAAACCATTGAGTGGGTACGTCAGGGA CTCACGGAGGCAGGCTATGTGGTTGATTATGCCTGTGATGGACGAGACGGATTACACCTA GCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATGCTGCCGGGGCTTGATGGA TGGCAGGTTTTACGCGCGTTGCGCACTGCATATCAGCCCCCTGTTATTTGCCTGACGGCG CGCGACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGCGCTAATGATTACCTTGTT AAGCCTTTTTCCTTCGCCGAACTGCTGGCCCGGGTGAGAGCTCAACTCAGACAGCATGTC CCGGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGATGCCACAAAGCAATCGGTG TTACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTCCTGCTCCTCTGGTTACTG GCGTCCCGGGCAGGGGAAATCGTGCCCCGAACCGCGATCGCCAGCGAAGTTTGGGGAATT AACTTTGATAGTGAAACCAACACCGTTGATGTCGCGATTCGTCGGCTGCGCGCCAAAGTA GACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCAGGGGATGGGTTATCGATTACAG GCGGAAACGTCGCAGAATGGTATGAAACGATATATACTGGCTACCGCGATAGCGTCTCTT GTTGCAGCCCCGGCAATGGCGCTGGCCGCTGGCAGCAATATTCTCAGCGTACATATTCTC GATCAGCAAACAGGCAAACCAGCGCCCGGCGTGGAGGTGGTACTGGAGCAGAAAAAGGAT AACGGATGGACGCAATTAAACACCGGGCATACCGACCAGGATGGACGAATTAAAGCACTG TGGCCCGAAAAAGCTGCCGCGCCGGGGGATTATCGCGTTATTTTTAAAACCGGCCAGTAT TTTGAAAGTAAAAAACTGGACACGTTTTTCCCGGAGATTCCCGTCGAGTTTCATATCAGC AAAACGAATGAGCACTATCATGTGCCGCTGTTATTAAGTCAGTATGGTTATTCAACCTAT CGCGGGAGCATGCAAGTAGATGAACAACGTCTGCGTTTTCGCGATGCGATGGCAAGTCTG GCGGCAGCGGTCAACATCGTAACCACGGCGGGTCACGCCGGACGCTGCGGTATCACCGCA ACAGCGGTTTGCTCAGTCACTGATACGCCGCCCTCCGTGATGGTATGTATTAATGCCAAT AGCGCCATGAACCCCGTTTTTCAGGGCAACGGCAGGCTGTGCATTAATGTACTTAACCAT GAGCAGGAGCTGATGGCGCGCCACTTTGCCGGTATGACGGGGATGGCGATGGAGGAGCGT TTTCACCAGCCATGTTGGCAAAACGGGCCGCTGGGCCAGCCGGTACTTAACGGCGCGCTG GCCAGTCTTGAAGGCGAGATCAGCGAGGTACAAACCATTGGCACGCATCTGGTGTATCTG GTGGCGATCAAAAATATTATTCTTAGCCAGGAGGGGCATGGCCTGATTTATTTCAAACGC CGTTTTCATCCGGTCAGACTTGAGATGGAAGCGCCTGTTATGGGACGCACACCGGATTAC AAAGCCGCCTTTGGCTGCGCTCTGGGCGCTAACCCAGCCTTCTACGGCCAGTTTGAGCAG AACGCCCGTAACTGGTACACCCGTATTCAGGAGACCGGCCTGTACTTTAACCATGCAATC GTCAACCCGCCCATTGACCGCCACAAACCTGCCGACGAAGTGAAAGACGTCTATATCAAG CTGGAGAAAGAGACGGACGCCGGGATTATTGTCAGCGGGGCGAAAGTTGTCGCCACTAAC TCCGCCCTGACTCACTACAACATGATTGGTTTCGGCTCAGCCCAGGTGATGGGCGAAAAC CCGGATTTTGCTCTGATGTTTGTCGCGCCAATGGATGCCGAAGGCGTAAAACTTATTTCG CGCGCCTCGTATGAAATGGTCGCGGGCGCGACGGGCTCGCCGTTTGATTATCCCCTCTCC AGCCGTTTTGATGAAAACGATGCCATTCTGGTGATGGACAAGGTGCTGATCCCGTGGGAA AACGTATTAATTTACCGTGATTTCGATCGTTGTCGTCGCTGGACGATGGAAGGCGGCTTT GCCCGTATGTATCCACTGCAAGCCTGTGTTCGTCTGGCGGTAAAACTTGATTTCATTACC GCGCTGCTGAAAAAATCGCTCGAATGTACGGGTACCGTAGAGTTCCGGGGCGTGCAGGCC GATCTCGGCGAAGTCGTGGCCTGGCGCAATATGTTCTGGGCATTGAGCGATTCTATGTGT TCTGAAGCAACCCCGTGGGTAAACGGCGCCTGGCTACCGGACCACGCCGCGCTGCAAACC TATCGTGTGATGGCCCCAATGGCCTACGCGAAAATTAAAAATATTATTGAACGTAACGTT ACCAGCGGCCTGATTTACCTGCCTTCCAGCGCCCGCGATCTGAATAATCCGCAAATCGAC CAGTACCTGGCGAAATACGTACGCGGCTCTAACGGAATGGACCATGTTGAACGTATCAAA ATTCTTAAATTGATGTGGGATGCCATCGGCAGCGAGTTTGGCGGTCGCCATGAGCTGTAC GAGATTAACTACTCGGGCAGCCAGGATGAAATTCGTCTGCAGTGTCTGCGTCAGGCCCAG AGCTCCGGCAATATGGATAAGATGATGGCAATGGTCGATCGCTGCCTCTCCGAATACGAT CAGAATGGCTGGACGGTTTCGCATTTGCACAATAACGACGACATCAATCAACTGGATAAG CTGCTGAAAATGCATGATTCATTAACCATCGCCTTGCTTCAGGCGCGCGAAGCGGCAATG ACCTATTTCCGCCCCATCGTTAAAAGCCACAATCTGACCGACCAGCAATGGCGCATTGTG CGAATCCTGGCCGATAGCCCCTCTATGGATTTTCACGAGCTGGCCTTTCGTACCTGTATT TTGCGTCCAAGTCTGACCGGAATATTGACGCGCATGGAGCGAGACGGACTGGTGTTGCGA CTCAAGCCGGTTAACGATCAGCGTAAGTTATATGTCATGTTGACGGAGCAGGGACAAACG TTGTACGCCCGTGCCCGGAGCGAGGTAGAAGAGGCTTATCGAAAAATTGAGGCCGATTTC ACGCCCGAAAAAACACAGCAATTGATGCTGCTGCTGGACGATCTTATTGCTCTGGGGCGC CAGCATCCTGATAGCGAAGCGGAAGCAATGAAGGGTACTGTTTTCGCCGTTGCGTTAAAC CATCGCAGCCAGCTTGATGCCTGGCAAGAGGCTTTCTCTCAGCCTCCCTATAATGCGCCG CCTAAAACCGCAGTGTGGTTCATCAAGCCGCGTAATACGGTGATTCGTCACGGCGAACCC ATTCCTTATCCGCAGGGAGAAAAGGTACTGAGCGGCGCGACAGTGGCGCTCATTGTGGGG AAAACCGCCAGCCGGATACGCCCTGAAGCGGCGGCGGACTATATCGCCGGGTATGCGCTG GCTAACGAGGTCAGCCTGCCGGAAGAGAGCTTTTATCGCCCGGCGATTAAAGCGAAATGT CGCGATGGCTTTTGCCCGCTGGGTGAAATGGCGCCGCTGAGTGATGTGGATAATCTCACC ATTATCACTGAAATCAACGGACGAGAAGCGGACCACTGGAATACTGCCGATTTACAGCGT AGCGCCGCACAACTGCTTAGCGCGTTAAGTGAGTTCGCTACACTTAACCCTGGCGATGCG ATCTTACTTGGTACGCCGCAGAATCGCGTTGCGCTGCGTCCCGGCGATCGGGTGCGTATT CTGGCGAAAGGTTTACCCGCGCTGGAAAATCCGGTTGTCGCAGAAGATGAATTCGCCCGC CACCAGACGTTTACGTGGCCGCTGTCAGCGACGGGAACGTTATTTGCGCTGGGGTTGAAC TACGCCGATCACGCCAGCGAGCTGGCATTTACGCCGCCGAAAGAGCCGCTGGTATTTATC AAAGCGCCAAACACCTTTACCGAACATCACCAAACGTCGGTGCGCCCGAACAACGTCGAA TATATGCACTACGAAGCCGAGCTGGTCGTGGTGATTGGCAAAACGGCGCGTAAGGTGAGC GAAGCCGAAGCCATGGAGTATGTGGCCGGTTACACCGTCTGTAACGACTACGCGATCCGC GACTATCTGGAAAACTACTACCGTCCGAATCTGCGGGTAAAAAGCCGCGACGGCCTGACG CCGATAGGCCCGTGGATTGTGGATAAAGAGGCGGTTTCTGATCCGCACAACCTGACGTTA CGCACCTTTGTCAACGGTGAGCTGCGGCAGGAAGGGACGACCGCCGATCTGATCTTCAGC ATCCCGTTCCTGATTTCTTATCTGAGCGAATTTATGACGTTGCAACCGGGCGACATGATT GCCACCGGTACGCCGAAAGGGCTGTCCGATGTGGTGCCGGGGGATGAAGTTGTCGTTGAA GTAGAAGGCGTGGGTCGCCTGGTTAACCGAATCGTCAGTGAGGAGAGCGCAAAAATGAAG AAAATAAATCATTGGATTAACGGCAAAAACGTTGCAGGTAACGACTACTTCCAGACCACT AACCCGGCGACCGGTGATGTGCTGGCGGAAGTAGCCTCCGGCGGTGAAGCAGAAGTGAAC CAGGCTGTCGCGGCGGCAAAAGAGGCGTTCCCGAAATGGGCCAACCTGCCGATGAAAGAG CGCGCGCGCCTGATGCGCCGCCTTGGCGACCTGATTGACCAGCATGTGCCGGAAATCGCG GCGATGGAAACCGCCGACACCGGCCTGCCTATTCACCAGACTAAAACGTGCGTGCTGATC CCGCGCGCCTCGCATAACTTCGAATTCTTCGCCGAAGTGTGCCAGCAGATGAACGGCAAG ACCTATCCGGTTGACGATAAAATGCTCAATTATACGCTGGTGCAGCCCGTCGGCGTCTGC GCGCTGGTGTCGCCGTGGAACGTGCCGTTTATGACCGCGACTTGGAAAGTTGCGCCGTGC CTGGCGCTGGGTAACACCGCGGTGCTCAAAATGTCCGAGCTGTCGCCGCTGACTGCCGAC AGGCTGGGCGAGCTGGCACTGGAGGCAGGAATTCCGGCAGGCGTGCTGAACGTGGTGCAG GGCTACGGCGCGACGGCGGGCGATGCGCTGGTACGCCACCATGACGTGCGTGCGGTGTCG TTTACCGGCGGTACCGCCACCGGTCGCAATATCATGAAAAATGCCGGGCTGAAAAAATAC TCGATGGAGCTGGGCGGCAAATCGCCGGTGCTGATTTTTGAAGACGCCGACATTGAGCGC GCGCTGGACGCCGCGCTGTTCACCATCTTCTCGATCAACGGCGAACGCTGCACCGCTGGG TCGCGCATCTTTATCCAGCAGAGCATTTACCCTGAGTTCGTGAAGCGCTTTGCCGAACGC GCGAATCGCCTGCGTGTCGGCGATCCGACCGACCCGAACACCCAGGTCGGCGCGCTGATT AGCCAACAGCACTGGGAGAAAGTCTCCGGTTATATCCGCCTCGGCATTGAAGAGGGGGCA ACGCTGCTGGCGGGCGGTGCGGAAAAACCCACTGACCTGCCTGCGCATCTGAAAGGCGGT AACTTCCTGCGCCCAACCGTGCTGGCCGATGTCGACAACCGTATGCGCGTTGCGCAGGAA GAGATCTTTGGGCCGGTCGCCTGCCTGCTGCCATTCAAAGACGAAGCGGAAGGGTTACGT TTGGCGAACGATGTGGAATACGGTCTGGCCTCTTATATCTGGACCCAGGACGTGAGCAAA GTGTTGCGCCTGGCGCGTGGGATTGAAGCCGGCATGGTCTTCGTCAACACCCAGAACGTC CGCGACCTGCGCCAGCCGTTCGGCGGCGTGAAAGCCTCCGGTACCGGGCGCGAAGGCGGC GAATATAGCTTCGAAGTGTTTGCGGAAATGAAAAACGTCTGCATCTCAATGGGCGACCAT CCTATCCCAAAATGGGGAGTTATGGGCAAGTTAGCGTTAGCAGCAAAAATTACCCACGTG CCGTCGATGTATCTTTCTGAACTGCCAGGAAAAAATCACGGTTGTCGTCAGGCAGCCATT GATGGGCATATTGAAATTGGCAAGCGTTGCCGCGAAATGGGCGTTGACACCATTATCGTA TTCGACACCCACTGGCTGGTGAATAGCGCTTACCACATTAATTGTGCCGACCATTTCCAG GGCGTCTATACCAGCAACGAATTGCCGCACTTTATTCGCGACATGACCTATGACTATGAC GGTAATCCGGCGCTCGGCCATCTGATCGCCGACGAGGCGGTCAAACTGGGCGTGCGCGCC AAAGCGCACAACATCCCGAGCCTGAAGCTGGAGTATGGCACGCTGGTGCCGATGCGCTAC ATGAACAGCGACAAGCACTTCAAAGTGGTCTCCATCTCGGCGTTCTGCACTGTGCATGAT TTTGCCGACAGCCGCAAACTGGGCGAAGCCATTCTCAAGGCGATTGAGAAATATGACGGT ACCGTAGCGGTATTCGCCAGTGGTTCTCTGTCGCACCGTTTTATTGACGACCAACGGGCG GAAGAGGGGATGAACAGCTACACCCGCGAGTTCGATCATCAAATGGACGAGCGCGTGGTC AAGCTGTGGCGCGAAGGCAAATTCAAGGAGTTTTGCACCATGTTGCCGGAGTACGCCGAC TACTGCTACGGCGAAGGCAACATGCACGACACGGTCATGCTACTGGGAATGCTGGGGTGG GACAAATACGACGGCAAGGTGGAGTTCATCACCGACCTGTTCGCCAGCTCCGGTACCGGC CAGGTAAACGCTGTTTTCCCGCTGCCTGCGATGCCGCACTTTATTGCTGAATGTACTGAA AATATTCGCGAGCAGGCTGATTTACCAAGCCTGTTCAGCAAGGTAAACGAGGCGCTGGCC GCCACCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGG CAGATGGCTGACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGCGCC GGGCGCAGCCTGGAGAGCCGTCAGGAAGTCGGCGAAATGCTGTTTGGGCTGATTAAAGCC CACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGATTGCCGAGTTA CATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAAATGCTCGATAAA CAGACCCATACCCTGATCGCTCAGCGACTTAATCAGGCTGAAAAACAGCGTGAACAGATT CGCGCAGTGTCGCTGGATTATCCCAACATCACTATTGAAGATGCCTATGCCGTACAGCGT GAATGGGTCAATATCAAGATTGCCGAAGGGCGCACGCTCAAAGGCCACAAAATCGGCCTG ACCTCAAAAGCGATGCAGGCCAGCTCGCAAATCAGCGAACCGGATTACGGCGCGCTGCTT GACGATATGTTCTTCCATGACGGCGGAGATATCCCCACCGACCGTTTTATCGTCCCGCGT ATTGAAGTGGAGCTGGCGTTCGTGCTGGCGAAACCGCTGCGCGGCCCTCACTGCACGCTG TTCGACGTCTACAACGCCACGGATTATGTGATTCCGGCGCTGGAACTGATTGACGCCCGC AGCCACAACATCGACCCGGAAACCCAGCGCCCGCGCAAAGTGTTCGACACCATTTCCGAC AACGCCGCCAACGCCGGGGTGATCCTCGGTGGTCGCCCCATCAAACCAGACGAGCTGGAT CTGCGCTGGATCTCCGCGCTGCTCTATCGCAACGGCGTGATCGAAGAAACCGGCGTCGCC GCAGGCGTGCTGAATCATCCGGCCAACGGCGTGGCGTGGCTGGCGAACAAGCTTGCCCCC TACGATGTCCAGCTTGAAGCCGGGCAGATCATCCTCGGCGGCTCGTTCACCCGCCCGGTG CCGGCGCGCAAGGGCGACACCTTCCATGTCGATTACGGCAACATGGGCGCGATCAGTTGC CGGTTTGTGATGAAAAATGCTTTCAAAGACGCGTTAAAAGCGGGGCGCCCGCAAATCGGT TTGTGGCTGGGGCTTGCCAACAGTTACAGCGCTGAACTGTTAGCGGGCGCCGGCTTCGAC TGGCTACTGATTGACGGTGAACACGCGCCAAACAACGTGCAGACGGTGTTGACCCAGTTG CAGGCGATTGCGCCTTATCCCAGCCAGCCGGTGGTGCGTCCGTCATGGAACGATCCGGTA CAGATTAAGCAACTGCTCGACGTCGGCGCGCAAACGCTGCTGATACCGATGGTGCAGAAT GCCGATGAAGCGCGAAACGCCGTGGCGGCTACGCGTTATCCGCCTGCCGGTATTCGCGGC GTGGGCAGCGCGCTGGCGCGGGCATCGCGCTGGAATCGCATTCCGGACTATCTCCACCAG GCCAACGACGCCATGTGCGTACTGGTGCAGATTGAAACGCGTGAGGCGATGAGCAATCTG GCGTCAATTCTCGACGTGGATGGCATTGACGGCGTGTTTATTGGCCCGGCGGATCTCAGC GCCGATATGGGCTTTGCCGGCAATCCGCAGCACCCGGAAGTGCAGGCGGCGATTGAGAAC GCCATCGTGCAGATACGCGCGGCGGGGAAAGCGCCGGGGATTCTGATGGCCAATGAAGCA CTGGCGAAACGTTATCTGGAACTGGGGGCGCTATTTGTCGCCGTCGGCGTTGACACCACG CTGCTGGCGCGCGGAGCGGAGGCGCTGGCGGCGCGCTTTGGCGCAGAAAAAAAACTGTCC GGTGCGTCCGGCGTCTATATGAGCGACACATCATCTGCACTTCCGGAAAGCCCCGAGTCT GTCGGTTCGCACAACGCGCTCAGCACGGGTCAACAAACCGTCATAAATAAACTGTTCCGC CGACTGATCGTATTTTTATTCGTGTTGTTTATCTTCTCGTTTTTAGACCGTATCAACATC GGTTTTGCCGGGTTGACGATGGGGCAGGATCTGGGGTTAAGCGCCACCATGTTTGGTCTT GCCACGACGCTGTTTTACGCCACCTACGTCATTTTCGGCATTCCCAGCAACGTGATGTTG AGCATCGTCGGCGCCCGCCGCTGGATTGCGACCATTATGGTGCTATGGGGCATTGCATCT ACCGCCACGATGTTCGCGGTGGGACCGAAAAGCCTGTATGTGCTGCGAATGCTGGTGGGC ATTACCGAAGCGGGCTTTTTGCCAGGAATATTGCTCTATTTAACCTACTGGTTCCCGGCA TTTTTCCGCGCCCGCGCCAACGCATTATTTATGATTGCCATGCCGGCCACTACCGCGTTG GGGTCAATTGTCTCCGGCTATATTTTATCGCTGGACGGCATATTCAATCTGCATGGATGG CAGTGGTTATTCCTGTTGGAAGGATTTCCGTCAGTTTTGTTAGGCATTATGGTCTGGTTT TACCTGGATGATACCCCGGCAAAAGCCAAATGGCTGACGGCAGAGGATAAAAAATGTTTG CAGGAGATGATGGATAATGATCGCCTGACGCTGGTTCAGCCTGAGGGGGCCATCAGCCAT AACGCCATGCAGCAGCGTAGCCTGTGGCGCGAAGTATTCACGCCAATTGTACTGATGTAT ACGCTGGCCTATTTTTGCCTTACCAATACGCTTAGCGCCATTAGTATCTGGACGCCGCAA ATCCTGAAAAGTTTTAATGAAGGCAGCAGCAATATCACCATCGGCCTGCTGGCGGCGATC CCGCAGATTTGTACTGTTCTGGGCATGATTTACTGGAGCCGCCATTCGGACAAACATCAG GAGCGTAAACACCACACTGCGTTACCGTTCCTGTTTGCCGCCGCGGGCTGGCTGCTGGCG TCGGCGACCGACCGTAACCTGATCCAGCTCCTGGGGATCGTGATGGCATCCACGGGTTCC TTTAGCGCGATGGCGATCTTCTGGACCACGCCGGATCAGTCGATCAGTTTACGCGCCAGG GCGATAGGCATTGCGGTCATCAATGCCACCGGCAATATTGGCTCCGCGCTCAGCCCGGTT ATGATTGGCTGGCTAAAAGATATCACTGGTAGCTTCAATAGCGGACTCTGGTTTGTCGCT TCTCTGTTAGTCGTCGGCGCCGCCATTATCTGGCTCATTCCCATGAAAGCATCGCGTCCG CGCGCCACCCCTATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGAC GAAAGCATGGGCAGTAACGATGTGCATTATCAGTCGTTTGCTCGTATGGCGGATTTCTTT GGTCGTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTCTTGATACC GGGCAGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTG CTAACGCCGCCCTCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGTCATGTT CTGACGGTACGCGAAGAGCTGGTTTGGCCGCTGCTGGAAGTGCTTTATCCCGGCACCAGA GAGGCCTTCGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACTCAACGAGCTGGCG GCGCTCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGC GAACATACCTTGGTACTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAG CTGGACGATCATGCCGCAACCGGGATGCGCGGTGAACTGAAACTTTTTCAGCGCTTTACC CTGTTAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCTGTGAGTTG CATATTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAA CGCCTGATTTTTGATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAAT GCTGTCAACGAGATCGCCTGGCAATTAGGTTTTAAAGATCCGGCTTATTTCGCCCGTTTC TTTAATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTCCTTCTTTT CTCAACATGATGAAAAAAAGCGTCGCTATGCTGGCGGTTTGTATGCTGGCGCAAAGCCAC CTTGCCATTGCTGCCGGTGCTCCTGCGCCTCAAGAGATCAACATTGTTTTACTGGGCACC AAAGGCGGGCCTTCTTTGCTCAATACAGCCAGACTACCGCAAGCGACGGCGCTCACTATC GGCGATAAGATATGGCTGATAGATGCCGGCTACGGCGCCAGTCTGCAACTGGTGAAAAAT GGCATTCCACTGCGCAACATCAATACTATTTTGCTCACCCATCTGCACAGCGACCACATA CTGGATTATCCTTCCTTGCTGATGAATGCCTGGGCAAGTGGCCTGAAAGACCATACCATA CAGGTTTATGGCCCGCCGGGAACCCAGGCGATGACGAAGGCTAGCTGGAAGGTCTTTGAC AGGGATATCACGTTACGCATGGAAGAAGAGGGGAAACCCGATCCGCGCAACCTGGTTAAG GCGACCGATATCGGCCAGGGCGTCATCTATAAAGATGAACTGGTCACAATAAGCGCGCTG AAAGTGCCTCATTCCCCTTTCCCGGACGGTGAAGCGTTTGCTTACCGTTTTGATACTCAG GGTAAGCGAATCGTCTTCTCTGGCGATACGTCCTGGTTTCCTCCGCTTGCAACGTTTGCC CAGGGGGCGGATATCCTGGTACATGAGGCGGTACATGTCCCTTCGGTAGCAAAACTGGCT AATAGTATTGGCAACGGAAAAACGCTGGCTGAAGCGATTGCGTCGCATCACACCACGATT GAAGATGTCGGTAAGATTGCTCGCGAGGCCCACGTGAAAAAACTGGTGTTAAGTCATCTG GTGCCTGCGACGGTTGCGGATGACGTCTGGCAACAGGAAGCCATGAAAAATTACCCGGGC CCTGTCATTGTCGGTCATGACAATATGACGATAAGCGTACCGATGGCTAACATCACTGTC ACCTTTACCATCACCGAATTTTGTTTGCACACCGGCGTGACGGAAGAGGAGCTAAACGAA ATCGTCGGACTTGGCGTAATTGAGCCTTACGAAGACGATAACGCCGACTGGCAATTCGAC GATCGCGCAGCGAGCGTGGTACAACGCGCGCTACGCTTACGCGAGGAGCTGGCGCTCGAC TGGCCAGGGATCGCGGTCGCGTTAACGCTGCTGGAAGAGAATTCACGGCTGCGCGAAGAA AACCGGTTACTGCTGCAACGCCTTTCTCGCTTTATCTCGCATCCCATGGAACTTAAGGAT TATTACGCCATTATGGGCGTGAAACCGACGGACGATCTCAAGACGATTAAGACCGCCTAT CGCCGACTGGCCCGCAAGTACCATCCAGATGTCAGCAAAGAACCCGATGCCGAAGCCCGT TTCAAAGAGGTTGCTGAAGCATGGGAAGTGCTGAGTGATGAGCAACGGCGCGCCGAGTAT GACCAGTTATGGCAACACCGTAACGATCCACAATTTAATCGCCAGTTCCAGCAACACGAA GGCCAGCCGTATAACGCCGAAGATTTTGATGATATTTTCTCGTCTATTTTTGGTCAGCAC GGTCGTCATTCGCACCACCGCCACGCCGCACGCGGTCATGATATCGAAATTGAAGTGGCG GTATTCCTGGAAGAAACGCTGGAAGAGCACCAGCGTACGATTAGCTATTCCGTCCCCGTT TATAACGCGTTCGGCCTGGTGGAGCGGGAAATTCCCAAAACATTGAATGTGAAAATCCCG GCTGGCGTCAGCAACGGGCAACGAATCAGACTGAAAGGCCAGGGCACGCCGGGGGAAAAC GGCGGACCTAATGGCGATTTATGGCTCGTTATCCATATTGCCCCGCATCCGCTCTTTGAT ATCGTCAATCAGGATCTGGAAGTCGTCCTTCCGCTTGCCCCATGGGAGGCGGCGCTCGGC GCTAAGGTGTCTGTGCCAACGCTTAAAGAGCGTATTTTGCTGACCATTCCCCCCGGCAGC CAGGCAGGTCAGCGGCTGCGTATCAAAGGAAAAGGATTAGCCAGTAAAAAGCACACTGGC GATCTCTATGCCATCATCAAAATCGTTATGCCGCCGAAACCTGACGAGAAAACAGCTGCC CTGTGGCAACAACTGGCGGACGCGCAGTCGTCCTTTGACCCACGCCAGCAATGGGGGAAA GCAATGGCGAAACAACAACGGATGGGCTGGTGGTTTCTTTGCCTTGCATGTGTCGTGGTA ATGGTTTGTACCGCGCAACGCATGGCGGGCCTGCACGCCTTGCAGATGCAGGCGACGGCC TCTGCTGCGGTGGTCAGCGCTCCCTCCTCGACAGATGACGGCTCGCCGGTCACTCCCTGC GAATTAAGCGCCAAGTCGCTGCTGGCGGCGCCTCCAGTACTCTTTGAAGGTGCTATCCTT GCGCTTTATCTACTGCTTTCCTTACTGGCGCCTGTCCGGGTCATGCGCCTGCCGTTTTCG CCTCCACGGGCTATTTCGCCGCCCACATTACGGGTACATCTACGATTTTGTGTCTTCCGT GAAATGATGATTTTATTCAGGCGGATACTGTTCTGCCTGTTATGGCTTTGGCTGCCCGTC TCCTGGGCGGCGGAAAGCGGCTGGCTGCGTTCGCCCGATAACGACCATGCCAGCATACGG CTACGTGCCGATACGTCCGCTAACAGTGAGACCCGGCTGTTGCTGGATGTCAAACTGGAA AACGGCTGGAAAACCTACTGGCGCGCGCCGGGGGAAGGGGGCGTGGCACCCTCTATCGCC TGGAAAGGCGACATGCCTGAGGTAAGCTGGTTCTGGCCAACCCCCTCGCGCTTTGATGTG GCGAATATCACCACCCAGGGATATCACGACGAGGTGACCTTTCCGATGATCGTGCGCGGT ACGCCGCCGGCGACCTTGCGCGGTGTGTTGACGTTATCAACCTGCAGCAATGTTTGTCTG TTGACCGATTACCCCTTTTCCGTGACGCCCACTGTGCAGAATGCCGATTTTGCCCATGAC TATGCGCGGGCGATGGGTAAAGTTCCGCTCCGCAGTGGGCTAACGGACTCGCTTGACGTT GGCTATCGCCCGGGAGAACTGGTGGTCACTGCTACGCGAGCGGCGGGCTGGTCATCGCCC GGGCTCTATCTTGACACCATAGATGACGTCGATTTTGCGAAGCCTCGCCTGCGCGTAGAG GGCGACAGGTTACAGGCGACGGTGCCGGTGACGGACAGTTGGGGCGAAAAGGCGCCCGAT TTGCGCGACAAATCGCTGACCCTCGTGTTAGCCGATGGCGCTATCGCCCAGGAGAGCACG CAAACCATTGGCGCTGCGCCAGCGCAAACGCCGGACAATGCGGCGCTACCTTTCTGGCAA GTTGTAATGATGGCGCTAATCGGCGGACTGATTCTTAATTTAATGCCCTGCGTACTGCCT GTTCTGGGCATGAAACTTGGCTCTATTTTATTGGTAGAGGAAAAAAGCCGCTCTCACATC AGGCGACAATTTTTGGCTTCGGTCGCCGGTATCATTGCGTCATTTATGGCGCTGGCGGCG TTTATGACCCTCCTTCGCCTGTCAAACCATGCGCTGGCCTGGGGAGTCCAGTTCCAGAAT GCATGGTTTATTGGTTTTATGGCGCTGGTGATGTTGTTGTTTAGCGCCAGCCTGTTCGGG CTTTTTGAGTTCAGGCTTCCCTCATCTATGACCACGAAACTGGCCACTTACGGCGGTAAC GGTATGTCGGGACATTTCTGGCAGGGGGCGTTCGCCACGCTGCTGGCGACGCCTTGTAGC GCGCCGTTTCTGGGCACGGCGGTCGCGGTGGCGCTCACGGCGTCGCTGCCGACGCTGTGG GGGCTGTTCCTTGCGCTTGGCCTGGGAATGAGCGCGCCGTGGCTACTGGTCGCGATACGA CCAGGGCTTGCGCTACGTTTACCGCGCCCCGGGCGTTGGATGAATGTCCTGCGCAGGATC CTCGGTCTGATGATGCTGGGGTCGGCTATCTGGCTGGCGACGTTACTCCTGCCGCATTTC GGCTTCACTGCGTCAAAGAGCGCGCAAGACACGGTTCAGTGGCAACCGTTGAGTGAACAG GCAATCCAGTCGGCGCTGGCGCAGCATAAGCGGGTATTTGTCGATGTCACTGCGGACTGG TGTATTACCTGTAAAGTGAATAAATACAACGTCCTGCAAAAAGAGGATGTGCAGGCCGCC TTGCAACAGCCGGATGTTGTGGCGCTGCGGGGAGACTGGACGCTGCCGTCCGATGCCATT ACAGATTTTCTGAAAACGCGCGGCCAGGTCGCCGTGCCGTTTAATCAGGTATATGGCCCC GGTTTGCCGGAAGGGGAGGCACTGCCCACTTTGCTGACCCGCGATGCGGTATTACAAACG TTGAAAAAAGCGAAAGGAATAACCCAAATGAAATACATGATTGTTTTACTGCTGGCGCTG TTTTCGACGCTGAGCATCGCGCAAGAAACCGCTCCTTTTACGCCGGATCAGGAAAAGCAG ATTAAAAATCTGATCCATGCGGCGTTGTTTAACGATCCTGCCAGCCCGCGGATAGGCGCT AAACACCCTAAGCTGACGCTGGTGAACTTTACGGATTACAACTGCCCGTACTGCAAACAG CTCGATCCGATGCTGGAAAAGATTGTGCAGAAATATCCTGACGTTGCGGTCATTATTAAA CCGCTGCCATTCAAAGGAGAGAGTTCCATACTGGCGGCGCGTATTGCGCTGACCACCTGG CGCGATCATCCGCAACAGTTCCTCGCGCTACATGAAAAACTTATGCAAAAGCGCGGTTAC CATACGGATGACAGTATTAAACAGGCCCAGCAGAAAGCAGGGGCGACGCCAGTGACGCTG GATGAAAAAAGCATGGAAACGATACGCACTAATTTGCAGTTGGCAAGACTGGTCGACGTG CAAGGAACGCCAGCGACGATCATTGGCGACGAGCTGATTCCGGGCGCAGTGCCCTGGGAT ACGCTGGAAGCGGTGGTGAAAGAAAAACTGGCGGCTGCCAATGGCGGGATGGCGGGTAAA CTGCGGCGTTGGCTGCGTGAAGCCGCGGTTTTTCTGGCGCTCCTCATCGCGATAATGGTG GTCATGGACGTCTGGCGCGCGCCGCAGGCGCCTCCGGCGTTTGCCGCGACACCATTACAT ACGCTGACGGGAGAGTCGACAACTCTGGCGACCTTGAGCGAGGAACGCCCCGTACTGCTC TATTTTTGGGCCAGCTGGTGCGGGGTATGCCGCTTTACCACGCCTGCGGTCGCTCACCTG GCGGCGGAAGGGGAAAACGTCATGACCGTTGCGCTCCGCTCCGGCGGTGATGCTGAGGTT GCCCGCTGGCTGGCGCGCAAGGGCGTTGACTTCCCGGTCGTCAATGATGCTAACGGCGCC TTATCCGCTGGCTGGGAAATCAGCGTGACGCCAACGCTGGTGGTGGTTTCACAAGGTCGG GTTGTGTTCACCACCAGCGGCTGGACCAGCTATTGGGGCATGAAGCTTCGGCTGTGGTGG GCAAAAACGTTCATGAAAAAATCATTACTCGCTGTTGCTGTGGCAGGGGCTGTTTTGTTG TCATCCGCCGTACAGGCGCAGACAACGCCGGAAGGTTATCAATTACAACAGGTGCTGATG ATGAGCCGCCATAATCTGCGGGCGCCGCTGGCGAATAATGGCAACGTACTGGCGCAGTCG ACGCCGAACGCCTGGCCGGCGTGGGACGTTCCCGGCGGGCAACTGACGACGAAAGGCGGC GTGCTGGAAGTCTATATGGGACACTACACACGTGAATGGCTGGTCGCGCAGGGGCTGATA CCGTCGGGAGAATGTCCGGCGCCCGACACGGTATATGCCTATGCGAATAGTTTGCAGCGC ACCGTCGCCACCGCGCAATTTTTCATTACCAGCGCTTTCCCCGGCTGTGATATTCCTGTT CATCATCAGGAAAAAATGGGCACTATGGACCCTACCTTCAATCCGGTGATTACCGATGAT TCCGCCGCGTTCCGGCAACAGGCCGTACAGGCGATGGAAAAGGCGCGTAGTCAGCTACAT CTTGATGAGAGTTATAAACTGCTTGAGCAGATAACGCATTATCAGGACTCGCCGTCCTGC AAAGAGAAGCATCAGTGTTCGCTAATCGACGCGAAAGATACCTTCAGCGCGAACTATCAG CAAGAGCCTGGCGTGCAGGGGCCGCTGAAAGTAGGGAACTCGCTGGTGGATGCGTTTACC CTGCAATATTACGAAGGCTTTCCGATGGATCAGGTCGCTTGGGGCGGGATCCACACCGAT CGGCAGTGGAAGGTGCTGTCAAAACTGAAAAACGGCTACCAGGACAGCCTGTTTACCTCA CCCACGGTGGCGCGCAATGTCGCTGCGCCGCTGGTAAAATATATCGATAAGGTGCTGGTT GCCGAGCGCGTTAGCGCGCCGAAGGTTACCGTGCTGGTGGGGCATGATTCCAATATCGCG TCGCTGCTGACGGCGCTGGATTTTAAACCCTATCAGCTCCATGACCAGTATGAGAGAACG CCGATTGGTGGTCAGCTTGTCTTCCAACGCTGGCATGACGGTAACGCTAACCGGGATTTG ATGAAAATCGAGTATGTCTACCAGAGCGCCCGGCAGTTACGTAATGCGGAAGCGTTAACG CTCAAATCGCCTGCGCAAAGGGTAACGCTGGAACTGAAAGGATGTCCGGTGGATGCGAAC GGCTTCTGTCCGCTGGATAAGTTCGATAACGTCATGAACACTGCTGCAAAAATGCCAACT CAAGAAGCAAAAGCGCACCGCGTCGGCGAATGGGCAAGCCTGCGTAATACGTCGCCGGAA ATTGCCGAAGCCATTTTTGAAGTCGCTCACTATGACGAGAAACTGGCAGAAAAAATATGG GAAGAAGGTAGCGATGAGGTGCTGATCAAAGCCTTTGAGAAAACGGACAAAGACTCGCTC TTCTGGGGCGAACAAGTCATCGAACGTAAGAACGTAATGGCAAAGATTCTGGTGCTCTAT TATTCCATGTACGGACACATTGAAACCATGGCGCACGCGGTGGCGGAAGGGGCAAAGAAA GTCGACGGCGCAGAGGTCATTATAAAGCGTGTGCCAGAAACAATGCCGCCTGAAATCTTC GCAAAAGCTGGCGGTAAAACGCAAAACGCACCGGTTGCCACCCCACAGGAGCTGGCGGAT TACGATGCCATTATTTTTGGTACGCCAACCCGGTTTGGCAATATGTCAGGCCAGATGCGT ACCTTCCTGGACCAAACCGGCGGACTGTGGGCATCCGGCGCGCTATACGGCAAGCTCGGC GGCGTGTTCAGTTCTACCGGAACGGGCGGCGGCCAGGAGCAGACCATCACCTCGACCTGG ACTACGCTTGCCCATCATGGGATGGTGATTGTCCCGATAGGCTATTCCGCACAGGAACTG TTTGACGTCTCCCAGGTTCGCGGCGGTACGCCTTACGGCGCAACGACTATCGCTGGAGGC GACGGTTCACGTCAACCAAGCCAGGAGGAACTCTCTATCGCTCGCTATCAGGGGGAATAC GTCGCCGGTCTGGCAGTCAAACTCAACGGCATGGCAAACCATCGTGGCGGTTCCGGTAAT TTTGCGGAAGACCGCGAAAGAGCATCAGAAGCAGGTCGTAAAAGTGGTCAGCACAGCGGG GGCAATTTTAAGAATGACCCGCAGCGTGCATCCGAAGCAGGCAAAAAAGGGGGCAAAAGC AGTAACCGTAATCGCATGTCGCAACGCACAGAGAAAAAAATCGGGAAACGTTCGCAGGCC ACCGGTGCAAAACGGCAGCTTATCTTAACCGCCGCGCTTGCCGTTTTTTCCCAGTATGGC ATTCATGGCGCGCGTCTTGAACAGGTCGCCGAGCGGGCAGGCGTCTCCAAAACCAATCTG CTTTATTATTATCCCTCGAAAGAGGCGCTGTATGTCGCGGTAATGCGACAGATTCTGGAT GTCTGGTTGGCGCCGCTCAAGGCGTTTCGCGCAGAATTTTCCCCTCTGGAGGCCATCAAA GAGTATATCCGTCTCAAGCTGGAGGTTTCGCGTGATTATCCGCAGGCGTCGCGGCTCTTC TGCATGGAGATGCTGGCGGGCGCGCCGCTCTTAATGGATGAACTGACCGGCGATCTAAAA GCGTTGATAGATGAAAAATCCGCGCTGATTGCCGGATGGGTGCACAGCGGGAAACTCGCG CCCGTTTCTCCGCATCATTTGATCTTCATGATTTGGGCCGCCACGCAACATTACGCCGAT TTCGCCCCTCAGGTTGAAGCGGTAACCGGCGCGACGCTTCGCGATGAAGCCTTTTTCAAC CAAACGGTCGAAAGCGTTCAGCGCATTATTATTGAAGGGATTCGCGTGCGTATGAAACGA ATTTTCCTTACCTGCGCGGCGTTGTTGTTCAGCAGTCAGGCGTTGGCCGATGAGTGTGCC AGCGCCAGTACGCAGCTGGAAATGAATCGCTGCGCCGCCGCGCAATACCAGGCGGCAGAT AAAAAGCTGAACGAAACCTATCAAAGCGCGATTAAGCGTGCGCAACCGCCGCAGCGTGAG CTATTGCAAAAAGCGCAGGTGGCATGGATTGCCCTGCGCGACGCCGATTGCGCGCTGATT CGCTCAGGTACGGAGGGCGGCAGCGTTCAACCCATGATCGCCAGCCAGTGCCTGACCGAT AAAACGAACGAACGCGAAGCGTTTTTAGCCTCGCTGCTGCAATGTGAAGAGGGTGATTTG AGCTGCCCACTGCCGCCAGCCGGTATGGGAACCACCACGATGGGGGTTAAGCTGGACGAC GCCACGCGCGAACGGATCAAAATGGCCGCGTCGCGTATCGATCGCACGCCGCACTGGTTA ATAAAACAGGCAATCTTTAGCTATCTGGACAAGCTGGAAAATAGCGATACGCTACCGGAG CTACCTGCGCTGTTTGCCGGCGCGGCAAATGAAAGCGAGGAGCCGGTCGCGCCGCAGGAT GAGCCGCATCAGCCCTTTCTGGAGTTTGCCGAACAGATTCTTCCCCAATCCGTCTCTCGC GCCGCCATCACCGCCGCCTGGCGCCGCCCGGAAACCGATGCGGTGTCAATGCTAATGGAA CAGGCGCGCCTGTCGCCGCCTGTCGCTGAGCAGGCGCATAAACTGGCGTATCAACTGGCG GAGAAATTGCGCAATCAAAAATCCGCCAGCGGTCGCGCGGGTATGGTGCAAGGCCTGTTG CAGGAGTTTTCCCTCTCTTCGCAAGAAGGCGTAGCGCTGATGTGTCTGGCGGAAGCGCTG CTGCGTATTCCCGACAAAGCTACGCGCGATGCGTTAATTCGCGACAAAATCAGTAATGGC AACTGGCAGTCGCATATTGGCCGTAGCCCGTCGCTGTTTGTAAACGCCGCCACCTGGGGG CTGCTCTTTACCGGCCGACTGGTCTCAACGCATAACGAAGCCAATCTTTCGCGCTCGCTG AACCGCATTATCGGCAAGAGCGGCGAACCGTTAATCCGCAAAGGCGTCGACATGGCGATG CGTTTAATGGGCGAGCAGTTCGTGACTGGCGAAACCATTGCTCAGGCGCTGGCGAATGCC CGAAAACTGGAAGAGAAAGGGTTCCGCTATTCTTACGATATGCTGGGCGAAGCCGCGTTA ACCGCCGCCGATGCGCAGGCCTATATGGTCTCTTACCAGCAAGCGATTCATGCCATCGGC AAAGCGTCTAACGGTCGCGGTATTTACGAAGGGCCAGGCATCTCGATTAAGCTGTCCGCC CTGCATCCACGCTATAGTCGCGCGCAATACGATCGGGTAATGGAGGAGCTTTATCCGCGC CTGAAATCCCTGACGCTGCTGGCGCGCCAGTATGATATCGGTCTCAATATCGACGCCGAA GAGGCGGATCGTCTGGAGATCTCGCTTGATCTGCTGGAAAAACTCTGCTTCGAACCCGAA CTGGCGGGCTGGAACGGCATTGGCTTTGTGATTCAGGCTTACCAGAAACGCTGCCCGCTG GTCATTGATTATTTAGTCGATCTGGCCTCCCGTAGCCGCCGTCGGCTGATGATTCGTCTG GTGAAAGGCGCCTACTGGGATAGCGAGATCAAACGCGCGCAAATGGAAGGGCTGGAGGGC TATCCAGTTTATACCCGCAAAGTGTATACCGATGTCTCTTATCTGGCCTGCGCGAAAAAA CTGCTCGCCGTCCCTAATCTGATCTACCCGCAGTTCGCGACCCATAACGCTCACACACTG GCGGCGATTTATCATCTGGCCGGGCAAAATTACTATCCGGGTCAGTACGAATTCCAGTGC CTGCACGGCATGGGAGAACCGCTGTATGAACAGGTCACCGGTAAAGTGGGGGACGGAAAA CTTAACCGTCCCTGCCGTATTTACGCGCCGGTGGGAACACACGAAACCCTGCTGGCCTAT CTGGTACGACGCCTGCTGGAAAACGGCGCCAACACCTCTTTTGTCAACCGCATCGCCGAT GCCACCCTACCGCTCGATGAACTGGTGGCCGACCCGGTCGAGGCCGTGGAAAAACTGGCG CAGCAGGAAGGTCAGGCTGGCATACCGCATCCAAAAATTCCGCTGCCGCGCGATCTGTAC GGCGAAGGTCGGATAAACTCCGCCGGACTTGATTTAGCGAATGAACATCGCCTCGCCTCG CTTTCTTCTGCCCTGTTAAGCAACGCCATGCAGAAATGGCAGGCCAAACCTGTGCTGGAA CAACCGGTGGCCGACGGTGAGATGACGCCGGTTATCAACCCGGCGGAACCGAAAGATATT GTTGGCTGGGGACGCGAAGCGACAGAAAGCGAGGTTGAACAGGCGTTGCAAAACGCGGTC AATCAGGCGCCGGTTTGGTTTGCGACGCCGCCGCAAGAACGCGCCGCTATTTTGCAGCGG GCGGCGGTATTGATGGAAGACCAAATGCAGCAGTTGATTGGCCTGTTGGTGCGTGAAGCG GGGAAAACGTTCAGCAACGCCATTGCCGAAGTGCGCGAAGCGGTAGACTTCCTCCATTAT TATGCCGGTCAAGTGCGTGACGATTTCGATAACGAAACGCATCGCCCGTTAGGGCCGGTG GTCTGTATCAGTCCGTGGAACTTTCCGCTGGCCATTTTCACTGGCCAAATCGCCGCCGCG CTGGCGGCAGGTAACAGCGTTCTGGCGAAACCGGCAGAGCAGACATCGCTGATTGCCGCC CAGGGCATTGCCATTTTGCTGGAAGCGGGCGTACCGCCGGGCGTCGTGCAACTGTTGCCG GGACGGGGAGAAACCGTCGGCGCCCAGCTTACCGCCGATGCGCGTGTACGCGGCGTGATG TTTACCGGTTCCACGGAGGTCGCGACGTTGTTGCAGCGCAACATCGCCACGCGTCTTGAC GCCCAGGGGCGCCCTATTCCGTTGATTGCGGAAACCGGCGGTATGAACGCTATGATTGTC GACTCTTCCGCGCTCACCGAGCAGGTGGTCGTGGATGTGCTGGCTTCCGCCTTCGACAGC GCCGGACAACGCTGTTCCGCGCTCCGCGTGCTGTGTTTGCAGGACGATATCGCCGAACAT ACGCTGAAAATGTTACGCGGCGCGATGGCGGAGTGTCGGATGGGGAATCCAGGCCGTCTG ACGACCGATATCGGGCCGGTGATCGATAGCGAGGCCAAAGCCAACATTGAACGTCATATC CAGACGATGCGCGCCAAAGGCCGCCCGGTTTTCCAGGCCGCGCGTGAAAACAGCGATGAC GCGCAGGAATGGCAGACCGGTACGTTTGTTATGCCCACGCTTATTGAGCTGGAAAACTTC GCAGAACTGGAAAAAGAGGTCTTCGGGCCCGTGCTGCACGTCGTGCGTTATAACCGTAAC CAACTGGCGGAGCTTATCGAACAGATTAACGCTTCCGGCTACGGGCTAACGCTGGGCGTA CATACCCGTATTGATGAAACCATTGCGCAAGTCACCGGTTCCGCCCATGTCGGCAACCTG TACGTTAACCGTAATATGGTGGGCGCGGTCGTCGGCGTCCAGCCGTTTGGCGGCGAAGGC CTGTCCGGCACCGGGCCAAAAGCGGGAGGGCCGCTCTATCTCTACCGCCTGCTGGCACAC CGCCCGCCCAATGCGCTCAATACGACGCTGACTCGTCAGGATGCGCGTTACCCGGTGGAT GCGCAGCTTAAAACCACGCTACTCGCGCCGTTGACCGCTCTGACGCAATGGGCGGCGGAT CGCCCGGCGCTACAGACGCTCTGCCGACAATTCGCCGATCTGGCGCAGGCCGGCACGCAG CGCCTGCTACCGGGGCCGACCGGCGAGCGTAATACCTGGACGCTGTTGCCGCGTGAACGG GTGTTATGCCTGGCTGATGATGAACAGGACGCGTTGACGCAGCTTGCCGCCGTTCTCGCC GTCGGCAGTCAGGCGCTATGGTCAGACGACGCCTTCCACCGCGATCTGGCGAAACGTCTC CCCGCCGCCGTCGCGGCGCGTGTCCAGTTTGCGAAAGCGGAAACGCTGATGGCGCAGCCG TTTGACGCGGTGATTTTCCACGGCGACTCCGACAAGCTGCGAACCGTGTGCGAAGCCGTC GCCGCCCGCGAAGGCGCGATAGTGTCGGTACAGGGGTTCGCCCGCGGCGAAAGCAATATG CTGCTGGAACGGCTCTATATTGAACGTTCGCTGAGCGTAAACACTGCCGCCGCTGGCGGT AATGCCAGCCTGATGACAATTGGCATGGCTATTAGCACACCGATGTTGGTGACATTCTGT GTCTATATTTTTGGCATGATATTGATTGGGTTTATCGCCTGGCGCTCAACCAAAAACTTT GATGACTATATTCTTGGCGGTCGCAGCCTGGGGCCGTTTGTTACGGCTTTATCAGCCGGC GCGTCGGATATGAGCGGCTGGCTGTTAATGGGGCTGCCTGGCGCTATCTTTCTGTCGGGG ATCTCTGAAAGCTGGATCGCCATTGGCCTGACGTTAGGCGCATGGATTAACTGGAAGCTG GTGGCCGGGCGCCTGCGCGTGCATACCGAATTTAACAATAACGCGCTCACGCTGCCGGAC TATTTTACCGGTCGGTTTGAGGATAAGAGCCGAGTCCTGCGTATTATTTCCGCGCTGGTC ATTCTGCTGTTTTTCACTATCTATTGCGCATCAGGTATTGTCGCTGGGGCACGACTGTTC GAAAGCACCTTCGGTATGAGCTATGAAACCGCACTGTGGGCGGGGGCCGCGGCAACCATT ATTTATACCTTTATCGGCGGGTTTCTTGCCGTTAGCTGGACGGATACCGTTCAGGCCAGC CTGATGATTTTTGCGTTAATCCTGACGCCGGTGATGGTTATTGTCGGCGTAGGCGGTTTT AGCGAGTCGCTGGAAGTGATCAAGCAAAAGAGCATCGAGAATGTCGACATGCTCAAGGGG CTGAATTTTGTCGCTATTATTTCTCTGATGGGCTGGGGGCTGGGTTACTTCGGTCAGCCG CATATCCTGGCGCGCTTTATGGCGGCGGATTCCCATCACAGTATTGTTCATGCGCGTCGT ATCAGTATGACCTGGATGATTCTGTGTCTGGCGGGCGCGGTGGCGGTGGGCTTCTTTGGC ATTGCGTACTTTAACAATAACCCCGCGCTGGCCGGGGCGGTGAACCAAAACTCAGAACGC GTATTTATTGAACTGGCGCAGATCCTGTTTAACCCGTGGATTGCCGGTGTTCTGCTGTCT GCTATCCTGGCGGCGGTGATGTCGACGTTGAGCTGTCAGTTGCTGGTATGCTCCAGCGCG ATTACGGAAGATTTATATAAGGCTTTTCTGCGTAAAAGCGCCAGCCAGCAAGAGCTGGTA TGGGTAGGGCGAGTGATGGTGCTGGTGGTAGCGCTGATCGCCATTGCGCTGGCGGCGAAT CCTGATAACCGTGTGCTGGGGCTGGTGAGCTACGCCTGGGCTGGATTCGGCGCGGCATTT GGACCTGTTGTCCTGTTTTCTGTGATGTGGTCGCGTATGACACGTAACGGCGCGCTGGCG GGAATGATTATTGGCGCGGTGACGGTTATCGTCTGGAAACAATATGGCTGGCTGGATCTG TATGAGATTATCCCTGGCTTCATTTTCGGCAGCCTGGGGATCGTAATCTTTAGCCTGCTT GGCAAAGCGCCGACAGCAACGATGCAGGAACGCTTTGCAAAAGCGGACGCGCATTATCAT TCCGCGCCGCCGTCGAAGCTACAGGCGGAAATGGTAATGTCCGCACCAGGACACATTGTT TACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGTGGTGGTCTTGTCATCTTA AAAGCTCTCATCATTTCCCTTACTGTCCATACCCATGACGCCATATGTGGTGCGCGTAGC CGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAGGAAGCCAACCCTCAGATG TGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTATACCTACAACTCAAGGTGC TATCCATGGGAAGACAAAAAGCAGATGGGAAGACAAAAAGCAGTGATCAAAGCTCGTCGT GAAGCAAAGCGTGTGTTGAGACGAGATTCGCGTAGTCATAAGCAACGTGAAGAAGAATCG GTCACGTCACTGGTACAGATGGGCGGAGTAGAAGCCATTGGCATGGCGCGCGATAGTCGC GATACCTCTCCTGTTAAGGCGCGAAATGAAGCACAGGCGCATTATCTGAACGCTATCGAC AGTAAACAGCTTATTTTTGCGACCGGCGAAGCCGGCTGCGGAAAAACATGGATCAGTGCG GCAAAGGCGGCAGAAGCATTGATTCATAAGGACGTCGAGAGGATCATTGTGACGCGTCCG GTATTGCAGGCTGATGAAGATCTTGGTTTTTTGCCCGGTGATATCGCTGAAAAATTCGCG CCTTATTTTCGTCCCGTCTACGATGTCCTGCTTAAACGGTTGGGCGCGTCCTTTATGCAA TATTGTTTGCGCCCGGAAATCGGTAAGGTAGAAATTGCCCCGTTCGCCTATATGCGTGGG CGTACTTTTGAAAATGCGGTCGTGATCCTCGACGAGGCGCAAAATGTGACTGCGGCGCAA ATGAAAATGTTTTTGACGCGATTAGGCGAAAATGTCACGGTCATTGTCAATGGCGATATT ACGCAATGCGACCTGCCGCGCGGTGTGCGTTCCGGGTTGAGTGATGCGTTGGAACGCTTT GAAGAAGATGAAATGGTGGGGATTGTGCATTTCAACAAAGACGACTGCGTGCGCTCGGCG CTTTGTCAGCGAACGCTCCACGCATACAGCATGGAGCCTCAACCCCCACGTCTGAAACCC GGAAAAATCCTTGACACTCTGGGTGCTATGCAAAAAAGCCTGACACGTGCCTCGCAGCGT ATTGCGCAATATATTTTAGCCTTCCCCAGACAGGTGACACAGTCATCTATTGCGGATTTG TCGCGCGACACACAGGCCGGAGAAGCCACGGTTATTCGCTTTTGTCGCACCCTGGGCTAT AAAGGTTTTCAGGATTTTAAAATGGACCTGGCCATTGAACTTGCCACTACCGAGTCTGAT GACAGTAGTCCTCTACTGGATGCCGAAGTTAGCGAATCCGACGATGCCCACGCGATTGGT TTAAAATTGCAGAACACCATTAGTAATGTATTATCTGAAACGCTAAATCTGCTGGATATG CAACAGGTTCTCGGTGTCGTGGACGCCCTACGTCACTGTCACTCAGTTTATATGTTTGGT GTGGGCTCATCGGGGATCACGGCGCTGGATATGAAACACAAGCTAATGCGTATGGGTTTA CGGGGCGATGCGGTAAGCAATAACCATTTTATGTACATGCAGGCTACGCTATTGAAAGCA GGCGATGTCGCGATGGGTGTCAGTCACTCGGGCACATCGCCAGAAACAGTGCATTCACTC CGATTGGCCCGACAGGCTGGCGCCACCACAGTCGCCATTACCCATAATCTGGGTTCTCCA TTATGTGAAGAGGCCGATTTTTGCCTGATCAATGGTAATCGGCAAGGAATGTTGCAGGGT GACTCGATCGGTACGAAAGCCGCGCAGCTTTTCGTCTTTGACCTGCTCTATACCCTTCTT GTACAGTCCTCGCCGGAACAGGCCCGAGAAAGCAAATTACGGACAATGAATGCCCTGGAC ATGACAAAAGTGATATGTCTGAAAGTCCAGGGCGGCATTGGTGAAATTTTTACGGTGACG CAGCAGGCGGATAAATTCTTGCCGGCTACGCAGTTCCACTGGAGCTGGACGGAAAGCACA GTACCTGTATTGATGATTGGGTTTCTGTTTGCCAATATTCAGCAATTTACTGCCAGTCAG GATGTGGTCCAACGCTATATGGTGACTGACTCCATAGAGGAAACGAAGAAAACATTACTT ACAAATGCCAAACTGGTTGCGGTGATCCCTGTTTTCTTTTTTGCTATCGGCTCGGCATTA TTTGTCTACTATCAGCAACAGCCACAATTATTACCGGCGGGATTCAACACTGGCGGCATT TTGCCCTTATTCGTGGTCACGGAAATGCCAGTCGGCATTGCAGGGTTGATAATCTCCGCT ATTTTCGCTGCCGCGCAGTCGAGCATCTCCAGCAGCTTAAACAGCATTTCCAGTTGTTTT AATTCCGATATCTATCAGCGGTTGAGTCATAAAAAAGGAACGCCAGAAAACCGTATGAAA ATAGCTAAGTTAGTTATTCTGGTCGCGGGCCTGATAAGTAGCGCGGCCTCGGTATGGCTG GTCATGGCCGATGAATCAGAGATCTGGGATGCATTTAATAGTCTGATAGGTCTGATGGGA GGGCCAATGACCGGTCTGTTGATGCTGGGCATTTTCTTTAAACGAGCAAATGCCGGGAGT GCGGTTTTAGGAATTATTATGAGCGTCATTACCGTGCTGGGCACACGCTATGCCACTGAC CTTAACTTCTTCTTTTATGGGGTCATTGGCTCGCTAAGCGTGGTGATCAGCGGCGTTATT TTCGCCCCGTTATTTGCCCCGGCACCGCCATTGACGCTGGATGAAAAACCTGAACCAAAG GTGACATTAATGTCACTATTAGCCAGGCTGGAACAAAGTGTACACGAAAACGGTGGGCTG ATTGTCTCATGCCAACCGGTACCAGGCAGCCCTATGGATAAACCTGAAATTGTGGCTGCA ATGGCACAGGCAGCGGCTTCGGCGGGTGCGGTCGCTGTGCGCATTGAAGGCATTGAGAAT CTGCGGACTGTTCGTCCCCATCTTTCTGTTCCTATTATTGGGATAATTAAACGTGACCTT ACAGGGTCGCCAGTCCGTATCACTCCATATTTACAGGATGTTGACGCCCTGGCGCAGGCA GGTGCCGATATTATCGCTTTTGATGCCTCATTCCGCTCTCGCCCGGTTGATATTGATAGT TTACTGACACGTATTCGCCTGCATGGATTACTGGCGATGGCAGACTGTTCAACCGTGAAT GAAGGCATAAGTTGCCATCAGAAAGGAATCGAATTCATTGGTACAACACTGTCTGGCTAT ACCGGTCCCATCACGCCGGTTGAGCCAGATTTGGCAATGGTGACACAACTGAGTCATGCA GGTTGTCGTGTTATTGCCGAGGGGCGCTATAACACGCCTGCACTGGCGGCCAATGCTATT GAGCATGGTGCCTGGGCAGTTACCGTTGGTTCCGCTATCACCCGTATCGAGCATATCTGT CAGTGGTTCAGTCACGCAGTAAAACGCATGAAAAATTTTAAGAAAATGATGACGCTAATG GCGCTATGTTTATCAGTTGCTATCACCACATCAGGATATGCAACCACGCTTCCTGATATA CCAGAACCACTGAAAAATGGTACTGGCGCTATTGATAATAATGGCGTGATTTATGTCGGC TTAGGTACCGCAGGGACATCCTGGTATAAAATTGATCTTAAAAAGCAACATAAAGACTGG GAGCGTATAAAGTCGTTTCCTGGTGGAGCTCGTGAGCAATCCGTGTCGGTATTTTTAAAT GATAAGCTGTATGTTTTTGGTGGCGTAGGGAAAAAAAACAGTGAATCACCGTTGCAGGTT TATAGCGATGTGTACAAATACTCACCGGTGAAAAATACATGGCAAAAAGTTGATACTATA TCTCCAGTTGGATTAACAGGGCATACGGGAGTAAAATTAAACGAAACGATGGTACTTATT ACCGGAGGGGTTAATGAGCATATCTTTGATAAGTATTTTATTGATATAGCGGCTGCGGAT GAAAGTGAAAAAAATAAAGTCATCTATAATTATTTTAATAAACCTGCCAAAGATTATTTT TTTAATAAAATCGTATTTATCTACAATGCTAAAGAGAACACATGGAAGAATGCCGGTGAG CTGCCAGGCGCGGGGACGGCAGGATCGTCATCGGTAATGGAAAATAATTTCTTGATGCTG ATTAATGGTGAGCTCAAACCGGGTTTACGTACCGATGTGATTTACCGCGCCATGTGGGAT AACGATAAGCTAACATGGTTGAAGAACAGCCAGTTACCGCCATCGCCTGGAGAACAACAG CAGGAAGGGTTGGCCGGAGCATTTTCGGGCTATAGCCACGGTGTCCTGCTTGTCGGTGGT GGCGCGAATTTTCCGGGAGCAAAACAAAATTATACTAATGGAAAGTTTTATTCCCACGAA GGGATAAATAAAAAATGGCGAGATGAAGTCTATGGTTTGATTAATGGCCATTGGCAATAT ATGGGTAAAATGAAACAACCTCTCGGCTATGGTGTATCAGTAAGTTATGGTGATGAAGTT TTCCTTATTGGTGGTGAAAATGCTAAAGGGAAACCTGTTTCGTCTGTAACCTCCTTTACC ATGCGTGATGGTAATTTATTAATAAAAATGAAAATCAACAGATATCTTCTGGGTATGGTT TCGTTTATAGCATTTTCATCATATCTACAAGCGGCAACCCTTGATTATCGGCATGAATAT GCTGATAGAACCAGAATTAATAAAGACCGTATTGCTATAATTGAAAAGCTTCCTAACGGC ATTGGTTTTTATGTCGATGCCAGCGTTAAATCGGGAGGAGTAGATGGTGAGCAGGATAAG CATTTAAGCGATCTCGTCGCAAACGCTATAGAACTGGGCGTAAGTTATAATTATAAAGTT ACGGACCATTTTGTTTTGCAGCCTGGATTTATATTTGAAAGCGGTCCAGACACTTCAATT TATAAGCCTTATTTAAGGGCGCAATATAATTTTGATTCTGGTGTTTATATGGCTGGTCGT TACCGTTATGACTATGCAAGGAAGACAGCTAACTATAATGATGATGAGAAAACGAATAGA TTTGATACTTATATAGGTTATGTTTTTGATGAGTTGAAATTGGAATATAAATTTACCTGG ATGGATAGCGATCAAATTAAATTTGATAACAAAAAAACAAACTATGAACATAATGTGGCT TTAGCCTGGAAACTGAATAAGTCATTTACACCATACGTTGAGGTCGGAAATGTAGCGGTG AGAAATAATACCGATGAGAGACAGACCCGTTATCGCGTTGGATTACAATACCACTTTGTG ATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACACGTCCACAAAAAAATGCTTTATTT TCAGCATGGCTGGGTTACGTTTTTGATGGCTTCGACTTTATGCTGATTTTCTACATTATG TATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTTGCCACAGCG GCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGACAAATTTGGC CGTAAGCCGTTAATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGGTTAAGTGGC CTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGTTTTATTGTCGGTATGGGGATGGCG GGGAAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCATTTAAAATCT AAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCAGCCTATTTT ATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGTTTGCTACCC GTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGGGAAGAAGCC AAACTCAGTGGTCTCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCTTTGTCAATG AAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATTGTTCTGTTC TCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTGGCGGGAGAG GGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGCACTGTATTG GGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACGTTCAGCATT GGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAAGATAATTAT TTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTTGGCGGGCTG GTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGTACCGGGCTT ATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACCTGGCTTGGA ATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACCGCAACAATT CTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAAAGGTTTCAG TCAACAAAAGAATTTATGACGAAATACGGTGTTATAGGTACAGGTTATTTTGGCGCTGAA CTGGCGCGATTTATGTCTAAGGTTGAAGGGGCGAAAATCACTGCGATTTACGATCCGGTA AATGCGGCTCCGATAGCGAAAGAGCTGAACTGTGTCGCCACTTCAACGATGGAGGCGCTT TGTACCCATCCTGATGTGGATTGCGTAATTATTGCTTCACCAAATTACTTACATAAAGCG CCGGTCATTGCGGCGGCTAAAGCGGGTAAACACGTGTTTTGTGAAAAACCTATCGCCTTA AATTACCAGGATTGTAAGGATATGGTTGATGCCTGCAAAGAAGCTGGTGTTACCTTTATG GCGGGTCACGTTATGAACTTTTTTCACGGGGTTCGCCACGCTAAAGCGCTCATCAAAGCC GGTGAAATCGGTGAAGTTACACAAGTTCACACTAAACGTAATGGTTTTGAAGACGTGCAG GATGAGATCTCATGGAAGAAGATTCGCGCAAAGTCAGGTGGGCATCTGTACCATCACATT CACGAGCTAGATTGTACACTGTTCATCATGGATGAAACCCCATCCCTGGTTTCAATGGCG GCGGGGAATGTTGCGCACAAAGGTGAAAAATTTGGTGATGAAGATGATGTTGTCCTAATC ACCCTTGAGTTTGAAAGCGGTCGTTTCGCGACACTTCAGTGGGGATCATCGTTCCACTAC CCTGAGCACTATGTATTAATTGAGGGCACGACAGGTGCAATTCTCATTGATATGCAAAAC ACGGCTGGTTATCTAATAAAAGCGGGCAAAAAAACACACTTTCTTGTGCATGAAAGCCAG GCGGAGGATGATGATCGTCGCAACGGTAACATATCCAGCGAGATGGATGGCGCAATCGCT TATGGTAAACCCGGTAAACGTACGCCGATGTGGCTCTCATCAATTATGAAACTGGAGATG CAGTACTTGCATGATGTGATAAACGGTCTGGAGCCAGGCGAGGAGTTTGCTAAATTGCTA ACGGGAGAAGCGGCGACAAATGCCATTGCTACCGCTGATGCTGCGACGCTTTCTTCAAAC GAGGGGCGCAAAGTTAAACTCACTGAAATTCTTGGCATGGAGATAATTTTTTATCACCCG ACATTTAACGCCGCCTGGTGGGTAAATGCGCTGGAGAAGGCTCTCCCACATGCGCGCGTT CGTGAATGGAAGGTCGGTGATAACAACCCCGCAGACTATGCGCTTGTATGGCAGCCCCCG GTTGAAATGCTGGCCGGAAGACGCTTAAAAGCCGTCTTTGTGCTGGGCGCGGGGGTGGAT GCAATTCTGAGTAAATTAAATGCGCATCCGGAAATGCTGGACGCCTCCATTCCTCTATTC CGTCTGGAAGATACCGGAATGGGCCTGCAAATGCAGGAGTATGCCGCCAGCCAGGTATTA CACTGGTTCCGTCGTTTCGATGATTATCAGGCGCTGAAAAATCAGGCGCTATGGAAACCG TTGCCGGAATATACCCGCGAAGAGTTTAGCGTCGGTATCATAGGCGCAGGGGTACTGGGC GCAAAAGTGGCAGAAAGTCTACAGGCGTGGGGGTTCCCGTTACGTTGCTGGAGTCGTAGC CGCAAATCCTGGCCTGGCGTGGAAAGTTATGTAGGGCGTGAAGAACTGCGCGCTTTCCTG AACCAGACGCGGGTGCTGATTAATCTGCTGCCGAATACGGCCCAAACGGTAGGAATTATT AATAGCGAATTGTTGGATCAATTGCCGGATGGCGCTTACGTGCTGAATCTCGCGCGCGGC GTTCATGTTCAGGAGGCGGATCTGCTGGCTGCGCTTGATAGCGGTAAGCTAAAAGGCGCG ATGTTGGATGTCTTTAGCCAGGAACCGTTACCGCAGGAAAGTCCATTATGGCGCCATCCG CGAGTCGCCATGACGCCGCACATTGCGGCAGTCACCCGTCCGGCGGAAGCCATCGATTAT ATTAGCCGCACCATTACCCAGCTGGAGAAGGGAGAGCCGGTGACGGGGCAGGTGGATCGG GCGAGAGGATATTGGATGATGCGCGCGATGAACATACTTCTTTCTATTGCTATCACTACG GGCATCCTTTCTGGAATATGGGGATGGGTGGCCGTCTCCCTGGGGTTACTAAGCTGGGCC GGTTTTTTAGGCTGTACGGCTTATTTGGCCTGTCCGCAGGGCGGCTTTAAGGGATTGTTG ATTTCCGCCTGTACGCTGTTAAGCGGGATGGTGTGGGCGCTGGTCATTATTCACGGTAGC GCGTTGGCGCCGCATCTGGAAATTGTGAGTTACGTGTTGACGGGGATCGTGGCATTCCTG ATGTGTATCCAGGCAAAGCAGCTATTGCTTTCTTTTGTTCCGGGAACATTTATCGGCGCC TGCGCGACATTTGCAGGGCAGGGTGAGTGGCGGTTGGTATTACCGTCGCTGGCGCTGGGG CTAATCTTTGGCTATGCCATGAAAAAGAGTGGGCTATGGCTGGCATCACGCCGCGAGCAA CATTCAGCGAATACGGCGGTCACAAAGATGAAACGCTATCTGACCTGGATTGTAGCAGCA GAGTTACTGTTCGCTACCGGAAACCTCCATGCCAATGAAGTTGAAGTCGAGGTTCCCGGA TTGTTAACCGACCATACCGTCTCTTCCATAGGACATGAATTCTATCGTGCATTCAGCGAC AAATGGGAAAGCGAATACACCGGCAACCTGACCATTAATGAAAGACCCAGTGCGCGTTGG GGAAGCTGGATCACCATAACGGTAAACCAGGACGTTATTTTCCAGACCTTTTTATTTCCA ATGAAAAGAGACTTCGAGAAAACCGTCGTCTTCGCATTAGCGCAAACAGAGGAAGCATTA AATCGCCGACAAATAGATCAAACGCTCTTAAGTACGAGTGATTTAGCGCGTGATGAATTC ATGTCCGTAATCAAGAAAAATATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATC CATTCTGCGGTAGGGCAACAAACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATT GTTGAGCCACTGTGCGATATTTCTACTCACGCCGAAAATATTGATTTAACCTGCCTACGC GAAGGTAAAAAGCAAATGCACCGGATAGACCTTCGGCAGGCATCTGGATTACCGCAGGAT ATTCAGTCCATTGCGACGGTACGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTG ATGAATATTGAGTACCGTATGACATCACGTCTTCAGGTCATACAGGGTGATATCACTCAA CTTAGCGTCGATGCGATTGTGAATGCCGCTAACGCATCATTAATGGGCGGCGGTGGCGTA GACGGCGCAATTCATCGCGCGGCGGGGCCGGCATTGCTGGACGCCTGTAAACTCATCCGT CAGCAACAGGGCGAATGTCAGACGGGACATGCGGTTATCACGCCTGCTGGCAAGCTTTCG GCAAAGGCGGTTATTCACACAGTGGGGCCCGTCTGGCGAGGCGGCGAACACCAGGAAGCT GAGCTACTCGAAGAGGCATACCGGAATTGTTTGCTGCTTGCCGAGGCGAATCACTTTCGT TCCATCGCTTTTCCGGCAATCAGTACCGGCGTTTATGGCTATCCACGCGCCCAGGCCGCT GAAGTCGCCGTCAGGACGGTTTCAGATTTTATTACCCGTTACGCTCTGCCTGAACAGGTA TACTTTGTCTGTTATGATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAA GGCGACGACCCTGCCATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAG GCGACGACCCTGCCTGATAAAACACGCCTGGAGCGTGCCGTTGAACCGCTATGCGCGCGC CATCCCGGAGAGTGCGGCATTCTTGCGCTGGATAACAGTCTGGACGCTTTTGCCGCCCGC TACCGCCTGACCGAAATGGCGGCGCGGACGCTGGATGTGCAGTATTATATTTGGGAAGAC GATATGTCCGGGCGGCTGCTCTTTTCGGTTCTGCTGTCGGCGGCGAAGCGCGGCGTTCAT GTTCGTCTGCTGCTGGATGATAACAATACGCCTGGTCTGGATGATACGTTGCGCTTGCTG GATAGCCATCCTAATATCGAAGTTCGTCTGTTTAATCCTTTCTCTTTTCGTACGCTACGC GCGCTGGGATATTTGACGGATTTTGCGCGGCTGAATCGGCGGATGCACAATAAAAGTTAC ACTGCCGACGGCGTAGTGACGCTGGTCGGTGGGCGCAACATCGGCGATGCCTATTTCGGC GCTGGCGAGGAGCCGCTATTTTCCGATCTGGACGTGATGGCCATTGGCCCGGTGGTCAAT GATGTCGCCAATGATTTTGAACGTTACTGGCGCTGTAGTTCAGTGTCGACATTGCAGCAA GTATTATCCCTTTCTGAGCAGGAACTGACGCAGCGTATCGAACTTCCCGAATCCTGGTAT AACGATGAGATCACCCGCCGTTATCTGCATAAGCTGGAAACCAGCCAGTTTATGGCGGAT CTCGATCGCGGAACGTTGCCGCTGATTTGGGCAAAAACACGCTTGCTTAGCGATGACCCT TCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTTCTTCCGCAGCGATTATTTGACGTG ATGGGGTCGCCGACGGAGCGTATCGACATTATTTCCGCTTACTTTGTCCCTACGCGCGCA GGCGTGGCGCAGTTGCTTAATCTGGTCAGGAAAGGTGTGAAGATCGCCATCTTAACTAAC TCTCTGGCGGCCAACGATGTGGCGGTCGTTCACGCAGGGTACGCGCGCTGGCGCAAGAAA TTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAACCGACCCGCGAACATGAAACCGCC GTACATGATCGCGGACTCACCGGGAACTCAGGTTCCAGCTTACATGCTAAAACGTTCAGT ATTGATGGTAGTAAGGTGTTTATCGGGTCGCTTAATTTTGATCCCCGTTCAACGCTTTTA AATACCGAAATGGGCTTTGTCATTGAAAGTGAAACGCTGGCGACGCTTATTCATAAGCGT TTTACGCAGAGCCAACGCGATGCGGCCTGGCAACTGCGGCTGGATCGCTGGGGACGAATT AACTGGATCGATCGTCAGCAAGAAGAGGAAAAGGTGTTAAAGAAAGAACCCGCTACGCGT TTCTGGCAGCGAGTTCTGGTACGGTTGGCGGCAATTTTACCTGTGGAATGGTTGCTGATG AGCTCTGTACCCGCGCCGCGTGAATATTTTCTTGACTCTATCCGCGCATGGCTGATGTTG TTAGGGATTCCCTTTCATATCTCGTTGATCTATTCCACTCACAGTTGGCATGTCAATAGC GCCGCGCCATCGTGGTGGCTAACCCTGTTTAACGATTTTATCCACGCTTTTCGTATGCAG GTGTTTTTTGTTATTTCTGGTTATTTTTCGTACATGTTATTTTTACGTTATCCATTAAAA CACTGGTGGAAAGTACGGGTAGAACGTGTGGGTATTCCCATGCTTACCGCAATCCCTTTG CTTACCTTGCCGCAATTTATCCTGTTGCAATATGTCAAAGAGAAAACAGAGAACTGGCCT ACACTCTCTGCCTATGAAAAATATAATACGTTAGCGTGGGAACTCATTTCACATCTGTGG TTTTTACTGGTGCTGGTGATATTAACCACCGTCAGCATCGGGATTTTTACCTGGTTCCAA AAAAGGCAGGAAACAAGCAAGCCTCGTCCCGCCGCTATTTCGCTGGCCAAACTTTCGCTT ATTTTTTTCCTGCTGGGGGTGGCGTACGCTGCTATCAGGCGCATTATATTCATCGTATAT CCGGCAATCCTCAGTGACGGCATGTTCAATTTTATTGTGATGCAAACGCTATTTTATGTG CCGTTTTTTATTCTCGGCGCGTTGGCCTTCATTCACCCCGATCTGAAAGCGCGCTTCACC ACGCCCTCACGCGGATGCACTTTAGGCGCTGCCGTTGCTTTTATCGCGTATCTGCTGAAT CAACGTTATGGGAGCGGCGACGCCTGGATGTACGAAACCGAATCCGTGATTACGATGGTA ATGGGGCTATGGATGGTGAACGTGGTATTTTCACTGGGGCATCGCTTGTTAAACTTTCAG TCCGCGCGTGTCACCTATTTCGTGAATGCTTCGCTGTTTATTTATCTGGTGCATCATCCC TTAACGCTTTTCTTTGGCGCGTATATTACACCGCATATCTCCTCCAACCTGATCGGGTTC TTGTGCGGGCTGATATTTGTTATGGGTATTGCGTTAATTCTGTATGAAATTCATTTACGC ATCCCGCTCCTGAAATTTCTCTTTTCAGGTAAACCGCCGGTAAAACAAGAAAGCCGCGCC GCGATCGGGATGAAACATAAACGACAAATGATGAAAATGCGTTGGTTGGGCGCAGCTATT ATGTTAACGCTCTACGCATCATCGAGCTGGGCGTTCAGTATTGATGACGTGGCAAAACAA GCTCAATCTTTAGCCGGGAAAGGCTATGAGGCGCCTAAAAGCAACTTGCCCTCCGTTTTC CGCGACATGAAATATGCGGATTATCAGCAGATCCAGTTTAACAGCGATAAAGCCTACTGG AACAACTTAAAGACCCCTTTTAAGCTCGAATTTTACCATCAGGGGATGTACTTCGATACG CCGGTCAAGATTAACGAAGTGACGGCGACGACGGTCAAAAGAATCAAATACAGCCCGGAT TACTTCAATTTTGGCAATGTTCAGCACGATAAAGACACGGTAAAAGATTTAGGCTTCGCC GGGTTCAAAGTCCTGTACCCCATTAACAGTAAAGATAAGAACGACGAAATCGTCAGTATG CTTGGCGCCAGCTATTTCCGCGTTATCGGCGCAGGCCAGGTGTATGGCTTATCTGCGCGC GGCCTGGCGATTGATACCGCCTTACCATCTGGTGAAGAGTTTCCCCGCTTTCGCGAGTTC TGGATTGAGCGTCCAAAACCCACCGATAAGCGTTTGACCGTCTATGCATTACTGGATTCT CCGCGCGCGACCGGCGCTTACCGTTTTGTGATCATTCCTGGCCGCGATACCGTGGTGGAC GTGCAGTCAAAAGTCTATCTGCGCGATAAGGTGGGCAAGCTGGGCGTTGCGCCATTAACC AGTATGTTCCTGTTTGGGCCAAACCAGCCGTCGCCGACGACCAACTATCGTCCGGAATTG CATGACTCGAACGGCTTATCCATTCATGCGGGTAATGGCGAGTGGATTTGGCGTCCGCTG AACAATCCAAAACACCTCGCTGTGAGCAGCTATGCGATGGAAAACCCTCAGGGATTCGGC CTGTTGCAGCGTGGTCGCGAGTTCTCGCGCTTTGAAGATTTAGACGATCGCTATGACCTG CGTCCAAGCGCCTGGATTACCCCGAAAGGCGACTGGGGCAAAGGTAAGGTTGAACTGGTT GAAATTCCGACCAATGATGAAACCAACGATAACATCGTCGCTTACTGGACTCCGGATCAA CTGCCGGAACCGGGTAAAGAGATGAACTTCAAGTACACTCTGACCTTCAGCCGCGATGAA GATAAACTTCATGCGCCGGATAATGCCTGGGTGCTGCAAACACGCCGCTCAACGGGCGAC GTTAAACAGTCGAATCTGATTCGCCAGCCCGACGGCACTATTGCCTTTGTGGTGGATTTC GTTGGCGCCGACATGAAAAAACTGCCGCCGGATACGCCCGTCGCTGCACAAACCAGCATT GGCGATAACGGTGAAATCGTTGACAGTAATGTACGCTATAACCCAGTCACTAAAGGCTGG CGTTTAATGCTGCGCGTGAAAGTCAAAGACGCGAAGAAAACCACGGAAATGCGTGCCGCA TTGGTGAATGCCGATCAGACGCTAAGTGAAACCTGGAGCTACCAGTTACCTGCCAATGAA ATGAATAAAACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCA TTGCCGAAAACTGACATCCGCGCCGTGCATCAGGCGCTGGATGCCGAGCATCGGACTTAC TCGCGAGAAGACGATTCACCGCAGGGTTCCGTAAAAGCCCGCCTTGAACACGCCTGGCCG GATTCATTGGCGAAGGGGCAGTTAATTAAAGATGATGAAGGGCGCGATCAGTTGCAGGCT ATGCCAAAAGCGACGCGCTCTTCGATGTTTCCTGATCCCTGGCGAACCAACCCGGTTGGC CGTTTCTGGGATCGCCTGCGTGGGCGGGATGTTACGCCGCGCTATGTTTCTCGTCTGACA AAAGAAGAGCAGGCGAGTGAGCAAAAATGGCGTACCGTCGGCACTATACGCCGCTATATT TTGTTAATTTTGACTCTGGCGCAAACCGTCGTTGCGACCTGGTATATGAAGACCATTCTG CCCTATCAGGGATGGGCGCTCATCAATCCTATTGATATGGTGGGGCAGGATATTTGGGTC TCCTTTATGCAGCTCCTGCCCTACATGCTGCATACCGGTATCCTGATTTTGTTTGCCGTG CTGTTCTGCTGGGTGTCTGCCGGATTCTGGACTGCGCTGATGGGCTTCCTGCAACTGCTT ATCGGGCGCGATAAGTACAGTATCTCCGCGTCTACGGTTGGCGATGAGCCCCTCAATCCG GAACACCAGACGGCGCTGATCATGCCTATCTGTAATGAAGACGTTAGCCGCGTTTTCGCC GGTCTGCGCGCGACCTGGGAGTCCGTTAAAGCTACAGGCAACGCCGCGCATTTTGACGTC TATATCCTTAGCGATAGTTATAACCCGGATATTTGCGTGGCGGAGCAAAAGGCGTGGATG GAGCTCATCGCGGAAGTGCAGGGCGAAGGCCATATTTTTTACCGTCGCCGCCGCCGCCGT ATGAAACGCAAAAGCGGCAATATTGACGATTTTTGCCGCCGCTGGGGCAATCAGTACAGC TATATGGTGGTGCTGGACGCGGACTCAGTGATTAGCGGCGAGTGTCTGAGCGGGCTGGTG CGCCTGATGGAAGCGAACCCTAACGCCGGGATTATCCAGTCTTCGCCGAAAGCGTCGGGG ATGGATACTCTGTATGCCCGCTGCCAACAGTTTGCGACCCGTGTTTATGGACCGCTGTTT ACCGCCGGGCTGCACTTCTGGCAGTTGGGGGATTCGCACTACTGGGGGCACAATGCCATT ATCCGCGTGAAGCCGTTTATCGAGCACTGCGCTCTGGCGCCGCTGCCGGGAGAAGGTTCG TTCGCCGGATCGATTCTTTCCCACGACTTTGTTGAGGCGGCGCTAATGCGTCGGGCAGGG TGGGGCGTCTGGATTGCCTACGATCTCCCCGGTTCCTATGAAGAGCTGCCGCCAAACCTG CTGGATGAGCTTAAACGCGACCGCCGCTGGTGTCACGGCAACCTGATGAACTTTCGTCTG TTCCTGGTGAAAGGAATGCACCCGGTGCATCGTGCCGTGTTCCTGACCGGGGTAATGTCA TACCTGTCCGCGCCGTTATGGTTTATGTTCCTTGCGCTTTCTACCGCGCTGCAGGTCGTT CATGCGTTAACAGAGCCGCAATATTTCCTTCATCCGCGCCAGCTTTTTCCGGTCTGGCCG CAGTGGCGTCCGGAACTGGCAATCGCGCTGTTTGCGTCAACGATGGTGCTGCTGTTCCTG CCGAAGCTGCTCAGTATTATGCTGATCTGGTGTAAAGGCACCAAAGAGTATGGCGGTTTC TGGCGCGTTACGCTGTCGCTATTGCTGGAAGTTCTGTTCTCCGTGTTGCTGGCGCCGGTG CGTATGCTGTTTCATACCGTGTTTGTGGTCAGTGCGTTCCTCGGCTGGGAAGTGGTCTGG AACTCACCGCAACGCGACGATGATTCTACGCCTTGGGGAGAAGCCTTTATGCGTCACGGC TCTCAACTGCTGCTGGGGCTGGTCTGGGCGGTTGGTATGGCGTGGCTGGATTTACGCTTT CTGTTCTGGCTGGCGCCGATTGTCTTTTCGCTTATTCTGTCGCCATTTGTTTCGGTGATC TCCAGTCGTTCAACGGTAGGATTACGCACCAATCGCTGGAAGCTGTTCCTGATCCCGGAA GAGTATTCGCCGCCTCAGGTGTTGGTCGATACTGATAAATATCTGGAGATGAATCGCCGC CGTATTCTGGACGATGGCTTTATGCATGCGGTTTTTAACCCGTCGCTTAATGCGCTGGCG ACCGCGATGGCCACCGCGCGTCACCGCGCCAGTAAGGTGCTGGAAATAGCCCGCGATCGT CATGTGGAGCAGGCGCTAAACGAAACGCCGGATAAACTGAACCGCGATCGGCGTCTGGTT TTGCTCAGCGATCCGGTGACGATGGCGCGTTTTCACTATCGGGTCTGGAATGCGCCAGAG AGATACTCTTCCTGGGTAAACCATTATCAGTCTCTCGTCCTGAATCCGCAGGCGTTGCAG GGACGAACATCGTCAGCGGGAGTGCGTATATTCGCGGTGAGCATAATGGTGATTACCCTG AGCGGCTGCGGCAGTATTATCAGCAGAACGATCCCCGGACAAGGACACGGCAACCAGTAT TACCCTGGCGTGCAGTTGGATATGCGTGATTCCGCATGGCGCTATATCACTATCCTCGAT CTGCCCTTCTCACTGATCTTCGATACACTGCTACTGCCGCTCGATATTCACCACGGGCCT TATGAGATGAAAAAAAACCTGCTGGGATTCACCCTCGCATCCTTGTTATTCACGACCGGT TCCGCCGTGGCGGCGGAGTATAAAATTGATAAAGAAGGCCAACATGCGTTCGTCAATTTC CGCATCCAGCATCTGGGCTACAGCTGGCTATACGGCACCTTTAAAGATTTCGACGGCACG TTCACTTTTGACGAAAAAAATCCGTCAGCAGACAAAGTGAATGTGACCATTAACACCAAT AGCGTCGACACTAACCATGCCGAACGTGACAAACACCTGCGTAGCGCGGAGTTTCTTAAT GTTGCGAAATTCCCGCAGGCAACCTTCACCTCTACCAGCGTGAAAAAAGAGGGCGATGAA CTGGATATTACCGGCAATCTGACGCTCAATGGCGTGACTAAACCGGTGACGCTGGAAGCG AAGCTGATGGGCCAGGGCGACGATCCGTGGGGCGGTAAGCGCGCGGGCTTTGAGGCCGAA GGAAAAATTAAGCTGAAAGATTTCAATATAACTACCGATCTCGGCCCAGCCTCACAAGAG GTGGAGCTTATCATCTCAGTAGAAGGCGTTCAGCAGAAGATGTTACTGATGATGGCGCTG ATCGTGCGTATTATCTGGCGGCTTTATTCTCCGCCGCCCGTTGCGTTGACCAGCTATTCC CGTTTAACGCGCATTGGCGCCGCCGCGGGTCATATCCTTCTGTATCTCCTGCTCTTTGCG ATAATCATTAGCGGCTACCTGATTTCCACCGCCGACGGTAAACCGATTAGCGTCTTTGGC TGGTTTGAGATTCCGGCCACGCTTACGGACGCGGGCGCGCAGGCTGACATCGCCGGAACA CTGCATCTGTGGTTTGCCTGGTCGCTGGTCATTATCTCGCTCTCGCATGGGGTTATGGCG CTAAAACACCATTTCATCGATAAAGACGACACACTGAAACGTATGACAGGAATGTCGTCA TCTGACTATGGAGCTCAAAAAATGAAATACGACCTTATTATTATCGGCAGCGGTTCGGTT GGCGCCGCCGCTGGTTATTACGCCACCCGCGCCGGGCTAAAGGTCCTGATGACCGATGCG CATATGCCGCCTTATCAACAGGGCAGCCACCACGGCGATACCCGTCTTATCCGCCACGCT TATGGTGAAGGCGAAAAATATGTCCCGCTGGTGCTTCGCGCCCAGACGCTTTGGGATGAG CTCTCCACACACAATGAAGAGCCTATTTTTGTCCGCTCCGGCGTCGTCAACCTCGGCCCG GCCGATTCCGCTTTCTTAGCCAACGTCGCACGAAGCGCGCAACAGTGGCAATTGAACGTC GAGCGCCTGGACGCGACGGCCCTCATGACGCGCTGGCCGGAAATTCGCGTGCCCGATAAT TATATCGGGCTGTTTGAAGCTGACTCCGGTTTCCTGCGCAGCGAATTAGCCATTACCACA TGGCTTCGTCTGGCCCGAGAGGCAGGCTGCGCACAGCTATTCAACAGCCCGGTAAGCCAT ATTCACCATGATGATAACGGTGTGACGATAGAGACGAGTGAAGGCTGCTACCACGCCAGC AAAGCGCTGATTAGCGCGGGCACCTGGGTCAAAACGCTGGTACCGGAGCTGCCCGTTCAG CCCGTACGTAAAGTTTTTGCCTGGTTTAAGGCGGATGGACGTTACAGCACTAAAAACCGC TTTCCGGCCTTTACCGGCGAAATGCCCAACGGCGATCACTATTACGGTTTCCCGGCGGAG AACGACGAGTTAAAAATCGGCAAACACAATGGCGGGCAGCGAATACAGGCACCGGAAGAG CGCAAGCCCTTTGCCGCCGTTGCCAGCGATGGCGCGGAAGCATTTCCTTTCCTGCGTAAC GTACTGCCGGGTATCGGCGGTTGTTTACATGGGGCGGCATGTACCTATGATAATTCGCCG GACGAGGATTTTATTATCGATACGCTGCCTGGCCATGAGAATACGCTTGTCATCACTGGA CTCAGCGGACATGGTTTTAAATTCGCCCCGGTGTTAGGAGAAATCGCTGCGGATTTTGCG TTGGGAAAAACGCCCTCCTTTGATCTGACGCCGTTCCGGCTTTCCCGTTTTAGCCAAATG GAAAAGAATAATGAAGTCATTCAGACCCATCCGCTTGTAGGATGGGACATCAGCACCGTC GATAGCTATGATGCGCTGATGCTGCGTTTACACTACCAGACCCCAAATCGTCCGGAACCG GAAGGGACTGAAGTTGGTCAAACGCTCTGGTTAACGACAGATGTAGCCAGGCAATTTATT TCAATATTAGAAGCCGGCATCGCCAAAATAGAATCAGGCGATTACCAGGAAAACGAGTAT CGTCACCAT Roary-3.8.0/t/data/reformat_input_gffs/000077500000000000000000000000001304207556500200445ustar00rootroot00000000000000Roary-3.8.0/t/data/reformat_input_gffs/expected_fixed_query_2.gff000066400000000000000000000341261304207556500251640ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=1_1___1;gene=different;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002___2;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;ID=abc_00003___3;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004___4;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 gene=speH;ID=1_2___5;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTRoary-3.8.0/t/data/reformat_input_gffs/expected_fixed_query_3.gff000066400000000000000000000341271304207556500251660ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=1_1___6;gene=different;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002___7;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003___8;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004___9;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=1_2___10;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTRoary-3.8.0/t/data/reformat_input_gffs/expected_real_1.gff000066400000000000000000000353511304207556500235630ustar00rootroot00000000000000##gff-version 3 ##sequence-region 2 1 15000 2 annotation remark 1 15000 . . . ID=id___1;accessions=REL607;comment=Source DNAEscherichia 2 feature source 1 4629812 . + . ID=id___2;mol_type=genomic DNA;organism=Escherichia coli;strain=REL607 2 feature CDS 190 255 . + 0 ID=id___3;codon_start=1;gene=thrL;locus_tag=ABC_00001;note=b0001;product=thr operon leader peptide;protein_id=kribb:ABC_00001;transl_table=11;translation=MKRISTTITTTITITTGNGAG 2 feature gene 190 255 . + . ID=id___4;gene=thrL;locus_tag=ABC_00001 2 feature CDS 336 2798 . + 0 ID=id___5;EC_number=2.7.2.4,1.1.1.3;codon_start=1;gene=thrA;locus_tag=ABC_00002;note=b0002;product=bifunctional aspartokinase I/homeserine dehydrogenase I;protein_id=kribb:ABC_00002;transl_table=11;translation=MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGACRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV 2 feature gene 336 2798 . + . ID=id___6;gene=thrA 2 feature CDS 2800 3732 . + 0 ID=id___7;EC_number=2.7.1.39;codon_start=1;gene=thrB;locus_tag=ABC_00003;note=b0003;product=homoserine kinase;protein_id=kribb:ABC_00003;transl_table=11;translation=MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN 2 feature gene 2800 3732 . + . ID=id___8;gene=thrB;locus_tag=ABC_00003 ##FASTA >2 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTRoary-3.8.0/t/data/reformat_input_gffs/query_1.gff000066400000000000000000000341021304207556500221150ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=1_1;gene=different;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=1_2;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTRoary-3.8.0/t/data/reformat_input_gffs/query_2.gff000066400000000000000000000341021304207556500221160ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=1_1;gene=different;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;ID=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 gene=speH;ID=1_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTRoary-3.8.0/t/data/reformat_input_gffs/query_3.gff000066400000000000000000000341021304207556500221170ustar00rootroot00000000000000##gff-version 3 ##sequence-region abc|SC|contig000001 1 15000 abc|SC|contig000001 Prodigal:2.60 CDS 172 1131 . - 0 ID=1_1;gene=different;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:Q2G1X0,protein motif:TIGRFAMs:TIGR01002,protein motif:Pfam:PF07968.6;locus_tag=abc_00001;product=Alpha-toxin,beta-channel forming cytolysin,Leukocidin/Hemolysin toxin family protein;protein_id=gnl|SC|abc_00001 abc|SC|contig000001 Prodigal:2.60 CDS 1804 1950 . + 0 ID=abc_00002;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00002;product=hypothetical protein;protein_id=gnl|SC|abc_00002 abc|SC|contig000001 Prodigal:2.60 CDS 1934 2131 . + 0 ID=abc_00003;inference=ab initio prediction:Prodigal:2.60;locus_tag=abc_00003;product=hypothetical protein;protein_id=gnl|SC|abc_00003 abc|SC|contig000001 Prodigal:2.60 CDS 2621 3337 . - 0 ID=abc_00004;inference=ab initio prediction:Prodigal:2.60,protein motif:CLUSTERS:PRK13350,protein motif:Pfam:PF02876.11;locus_tag=abc_00004;product=superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00004 abc|SC|contig000001 Prodigal:2.60 CDS 3445 4170 . - 0 ID=1_2;gene=speH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:UniProtKB:P0C0I6,protein motif:CLUSTERS:PRK13349,protein motif:Pfam:PF02876.11;locus_tag=abc_00005;note=SPE H;product=hypothetical protein,superantigen-like protein,Staphylococcal/Streptococcal toxin%2C beta-grasp domain;protein_id=gnl|SC|abc_00005 ##FASTA >abc|SC|contig000001 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTRoary-3.8.0/t/data/reformat_input_gffs/real_1.gff000066400000000000000000000352311304207556500216770ustar00rootroot00000000000000##gff-version 3 ##sequence-region 2 1 15000 2 annotation remark 1 15000 . . . accessions=REL607;comment=Source DNAEscherichia 2 feature source 1 4629812 . + . mol_type=genomic DNA;organism=Escherichia coli;strain=REL607 2 feature CDS 190 255 . + 0 codon_start=1;gene=thrL;locus_tag=ABC_00001;note=b0001;product=thr operon leader peptide;protein_id=kribb:ABC_00001;transl_table=11;translation=MKRISTTITTTITITTGNGAG 2 feature gene 190 255 . + . gene=thrL;locus_tag=ABC_00001 2 feature CDS 336 2798 . + 0 EC_number=2.7.2.4,1.1.1.3;codon_start=1;gene=thrA;locus_tag=ABC_00002;note=b0002;product=bifunctional aspartokinase I/homeserine dehydrogenase I;protein_id=kribb:ABC_00002;transl_table=11;translation=MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGACRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV 2 feature gene 336 2798 . + . gene=thrA 2 feature CDS 2800 3732 . + 0 EC_number=2.7.1.39;codon_start=1;gene=thrB;locus_tag=ABC_00003;note=b0003;product=homoserine kinase;protein_id=kribb:ABC_00003;transl_table=11;translation=MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTAQRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN 2 feature gene 2800 3732 . + . gene=thrB;locus_tag=ABC_00003 ##FASTA >2 ACTGGCCGCCTAATAATAAAAACTCTAAAAGTTGTAATTTAAAATAGTTCTTTAAATTAT ATACCCACCACATTTGGTGGAGAACCAAAAATTAGCCGAAAAACATCATTTCTGAAGTTA TCGGCTAAAGTTATAAATTATATTTATTTGTACATGAACAAATAATTTACATTAATTTGT CATTTCTTCTTTTTCCCAATCGATTTTATATCTTTCTGAAGAACGATCTGTCCATTTATC TTTAGTATTGGTACCTTTCCAATTTGTTGAAGTCCAATGCAATTGGTAGTCATCACGAAC TCGTTCGTATATTACATCTATATTTGTTTGTTGTTTGGATGCTTTTCTATCCATAGTAAT AACTGTAGCGAAGTCTGGTGAAAACCCTGAAGATAATAGAGAACTTGCTTTGTTAGGATC AAGGAAGTTCTCTGCTGCTTTCATAGAACCATTTCTAGTTTTCATGAAAAGTTGATTGCC ATATACCGGGTTCCAAGAATCTCTATCATATGGTCCCCAATTTTGATTCACCATATTGTT AAATATCACTTTCCAGCCTACTTTTTTATCAGTTGGGCTCTCTAAAATTGTTTTGAAATC AGGTTGAACATATTTCAGTGTATGACCAATCGAAACATTTGCACCAATAAGGCCGCCAAT TTTTCCTGTATCATCACCAGTAACATTACCGTTGAATCCATAAGTTAAAGTACTCATATA CTCTTTTGTATCAATCGAATTTCTTGGATAGTAATCAGATATTTGAGCTACTTCATTATC AGGTAGTTGCAACTGTACCTTAAAGGCTGAAGGCCAGGCTAAACCACTTTTGTTAGCACC TTCTTCGCTATAAACTCTATATTGACCAGCAATGGTACCTTTCGTTCTAATAACTAGCAG TTTTTTATTGTGATTTTTATCATCGATAAAACTATAAAATACTTTTTTGTGCATGCCATT TTCTTTATCATAAGTGACTAAATCACCTGTTTTTACTGTAGTATTGCTTCCAATATCTGT AGTACCGGTTTTAATATTAATATCAGAATCTGCGGCATTAGCGACAGGATTCATTAATAT GGAACCTAGCAATAGTGTTGTTGTTACTGAGCTGACTATACGTGTTTTCATTTTCATCAT CCTTCTATTTTTTTTAACGATTTGAGGAAACAATAATCAATATGTCAATTTAGAATATTG CAGTTGAGACATATCAAATATTTATAATCGTTTATATTAGTATATTTAATGTAGCAACTG ATAAATTACTGAGTGATGATGAGTGATTATTTTAAGAATATGTTTTTAACTTTTATTTAA AATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGA AACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTT GATTTAAAAATGTAATCGATTACAATATAAAAATACAAATATCTTAGAATTAAATCAATT AATTAACTATTAAATAAAAATTAAATATATATTAACTACTGTAAATTAATAAATAGAAAT AGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAATTTTTGCCATTACAT AGAAATATCTAATAGATAATGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATAT CATATGTAAAATAAAATGTAGATTTTTAGTTAGAGGCATTATAAGAAAATTTTGAGTATA GGTTAGCTTTTAATTATGAATCTTATTGAAATTTGATTAATAAATATATGATAGGGGATT AAAATGAAACTATTTTATATCGTATTTCTTATTATTATATGGCTGAATATATTTTTAGGA AATGAAATTATCCATACACTGACTGTTTTAATAACAACATTGTATATTGTTAATTCAAGA AAGGGGATTAAAAATGACAGAGTTGAATAATATTATAAACTCTCTTCAATCTTTGTTTGA GTCTGAATCAGGCTATAAAATTTCGAAAAATTCAGGAGTTCCATATCAAACAGTACAAGA TTTAAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTA TAGTTACTATGTCTCATTAAAAGAACATTAATCATGGGACAATAAAGTATTGCTATAATA ATTGAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCT ACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGACCATGTAACAAGCATTTTTGG GGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGG CCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCA ACATAGAGAAATTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAGTGACAACGAAA TAAATTTTATAAAATACCATTTCTGTCACATTCCTACTCCCAATTCCATTTAAATATATA GAAAATTTCACCTATTATATACATCATACACTTTAAAAATTATCATTTAAATAATCTGAT TTGGAATTAAAGTGCATGAAGTATAAGTCACCTTCATATACTAATCAAAGAGGACGTCAA CAGTTATTTTATTAGGATTTTTAACATAAACATTTGCTAGATCTGAATGTAATCTTTTGC TTAAATCAATAGTGTAGTTATTACCGCCACCGGTGATCTTAAGCTTACCTTTATTACGAT TTTCGGTATATAATATTTTATTTTTTATTAACGCTTCTCGTGCACGGAAATCGATTTCTT TCAATGTTAATACTGGTTTATTGCCTTGGTATATTTTATGCGCACCAATAATCGTTTGTA GTTTATCTTTGTATTGCACAAAAAGATTATAAGTTTTATCAGAAGGTTTTGCGGCTGGTG TAACGCCACCTGTAAATGTCTCTCTATAAGACCACCATAACTGATCAGTATCTTTGTCTT TTAGTCCAAACACATCTACGTAACGATCTTTTAACTGATTAATATTTCCCCAACTTTCAG CGCCCCATAAAGATATATGTGCTGACCATGAATATCTCTTAAGTTCAACATAAATGTTTC CATTATCATATTGATATAGCCATTTATTTGAAAATGAAAAATGAGGCTGTGTGTAATATT TAATTAATTCATTGATGTTAGTTTCATCTTGACCAATGCTATAAGCTTTAGCTTCAGAGT AAAAACTAAATACTGGTTTTTGATTTTGAGGTAATACAGTACCTAATAGTAATAATGTTG TCGTTAAAATTATATTTTTCGTGATGTTCTTACTCATTAGAACATCTCCTTTCAGAGGAA TCATGATACGAGGAATAAGAAATTTAAATGTGAGCGAAGTCAATATAGTATTTGCGATTA TTTTTATTAACTCCATTATTATTGTTAGTTTGATTTTTCGAGGATAACTTCAATTTTTGC ATTTTGAGGTTTTTTAACATATCTATTTGCATCAGTTGATGGCAACCTTTTACTTAAATC TATTGTGTAGTTATTGTCTGTACCTGTTATTTTAATTTGTCCTTTATTATAAGAATTATT ATATAATTTTTTACTTTTAATTAATGTTTGACGAATACGAAAATCTAATTCTTTTAAAGT TAAAACAGGCTTATTGCCTTCATAAACTGGAAATCCGCCAGTAAACGTTTCTGCTTTATC TTTATATGTTACATTCAGTTTATAGTGTTTATCGTTAGATGTTGCTGCAGGAGTAACACC ACCAGTAAACGTTTCTTGAGATAATGCAAAAGAATCAATGGTTTCTTGGTCTTTTATGCC AAAAATATCAACGCTTTTATTTCTTAATTGGTTGATATTGCCCCAACTTTCAGGTCCATA AACTTGAATATGACTATACCAAGAAAACTGTAACAACGTTGCATGAATCGTACCGTTATC TTTTTGCCATAACGTACTGTTAGAGAAGGTTAAATATTTTTGCGAGTAATATTTAGTTAA CTCATTAACGTTAGTTTCGTTTTGATTTATATAATAAGCTTTCGCTTCAGATGAAGAATT GATAGGTGTATTAGGAAATTGTGTAAATGCTGTACCTAATAGTAACAATGTTGTTGATAA AATAATTTTTTTCGTGATGTTATTGTTCATTCGAATTTCTCCTTTGAGTATTGTTGGAAT GTTTAATTATAAAAAGGGGTTAATTAGATAATTGAAATTATCCGCATTTACAAAAGGTAA TAGGTTAGTTAGATTTTTCGAGTATGACTTCAATTTGTGCATTTTTAGGATTTTTAACAT AACGGTTTGTGTCAGTTAATTTTAACTTTTTACTTAAATCAATCGTGTAATTATTTCCAT CAGCAGTTATCTTAATTTGACCTTTATTAAATTCTCCGTTATATAACTTTTTATTCTTTA TTAATGTTTGACGAATACGGAAATCTAATTCTTTTAAAGTTAATACTGGTTTATTTCCTT TGTAAAATTCATGTCCACCGATGATAGTTTGTTGTTTATCACTATATTTTAAAAATAGTC TATAAGGTTTATCAGATGAAGTAGCTGCTGGCGTAACACCACCAGTAAATGTTTCATCAT AAGTCCAGTAACCTTCAACTGTGTCCTCATCTTTAGTTCCAAATATATCAACGTATTTAT TTCTTAACTGATTAATGTTTCCCCAACTCTCGGATCCAAACACTTGAATATGACTATACC AAACCCACGTTTGCAATGTTGCATGAATGCTACCATTGGGCTTTTGCCATAGCCATTTTC CAGATAATGAAAAATGCGGCTGAGTGTAATATTTGATTAACTCATTGATATTAGTCTCGT TTTCACTGATATTATAGGCTTTTGCTTCAGATGAAAAACTGATTGGTGTTTTAGGAAGTT GTGTTGATGTGGTTCCTAAAAGTAACAATGCTGTTGATAAAACTAATTTATTCATGATGT TCTTTTTCATATGAAAATCTCCTTTGCGTGAATTACCCAAAGTATATAAGCTATTACACC GATTCGGAATTAAATAAAAGCTAAAACTATGTTAAATAAACTTAAACAGTTAGTAGTGTT ATTTAAGCAAAACTTATCATTTTTAAGTTTTGGACAGAAACAGTACTTAATAAAGTAGGC GGGAGTTATATATTAAAAACGACACGTTACAATTATTCTCTAATCAATTGCATTAAATTG TTTGATAATTGAATTTTCTAACTACTTGAAAAATAGTTATACTTTAAATGTAGTACTTAT TTTAATTATTTCCTACTACTTAAATTTAATATTAATAAAATGTTCATTTAATTATTGATA AAATATTACAAATTTTAATAGTAGGTTGTGTTTATTTTGTATGCGCTTACAATTTAGGTG TAACTAAAATAAAAGGAGTTGTTATTAATGAAAAATTTACGAAACAGAAGTTTTTTAACT TTATTAGACTTTTCACGACAAGAGGTAGAATTCTTATTAACACTCTCCGAGGATTTAAAA CGTGCTAAATATATTGGCACTGAAAAGCCTATGTTAAAAAATAAAAATATTGCACTGTTA TTTGAAAAAGATTCTACAAGAACGCGATGTGCATTTGAAGTTGCAGCGCATGATCAAGGT GCAAATGTAACTTATTTAGGCCCAACTGGATCACAAATGGGTAAAAAAGAAACAACTAAA GATACTGCACGTGTGCTTGGTGGAATGTATGATGGCATTGAATACCGTGGTTTTTCACAA AGAACAGTAGAAACTTTAGCTGAAAATTCAGGCGTACCAGTGTGGAATGGTTTAACTGAT GAAGATCATCCTACTCAAGTTCTTGCTGATTTCTTAACAGCAAAAGAAGTCTTAAAAAAA GATTATGCAGATATTAACTTTACATATGTTGGAGATGGTCGTAATAACGTTGCAAATGCA TTAATGCAAGGTGCTGCCATTATGGGTATGAACTTCCATTTAGTTTGTCCAAAAGAATTA AATCCAACAGATGAATTATTAAATCGCTGTAAAAATATTGCCGCTGAAAATGGTGGCAAC ATATTAATCACAGATGATATTGACCAAGGTGTAAAAGGTTCGGATGTAATTTACACTGAT GTTTGGGTATCAATGGGTGAACCTGATGAAGTATGGAAAGAACGACTTGAATTATTGAAA CCATATCAAGTAAATAAAGAAATGATGGATAAAACTGGTAATCCAAATGTTATTTTTGAG CATTGCTTACCATCTTTCCATAATGCTGATACGAAAATTGGTCAACAAATTTTTGAAAAA TATGGTATTCGAGAAATGGAAGTTACAGATGAAGTATTCGAAAGTAAAGCTTCAGTTGTA TTCCAAGAAGCTGAGAACAGAATGCATACAATCAAAGCAGTCATGGTTGCTACATTGGGT GAATTTTAAATGATATAAGGAAGTGAATATGATGGCGAAAATAGTAGTAGCATTAGGTGG TAATGCTTTAGGAAAATCACCTCAAGAACAACTCGAGCTTGTTAAAAATACTGCGAAATC ATTAGTAGGATTAATAACAAAAGGACATGAGATTGTTATTAGTCATGGTAATGGACCACA GGTTGGAAGCATTAATTTGGGACTTAACTATGCTGCAGAACATAACCAAGGTCCGGCATT TCCATTTGCTGAATGTGGCGCAATGAGTCAAGCTTACATCGGCTATCAATTACAAGAAAG CTTACAAAATGAATTGCATTCTATTGGAATGGATAAACAAGTGGTAACACTAGTGACACA AGTTGAAGTTGATGAAAATGATCCGGCATTTAACAATCCTTCAAAACCAATTGGGTTATT TTACAACAAAGAAGAAGCTGAACAAATTCAAAAAGAAAAAGGATTTATATTTGTTGAAGA TGCTGGAAGAGGATATAGACGCGTTGTTCCTTCACCACAACCCATCTCTATTATTGAATT AGAGAGTATTAAAACACTTATTAAAAATGATACACTCGTTATTGCTGCTGGTGGTGGAGG TATACCAGTAATTAGAGAGCAACATGATGGTTTTAAAGGTATTGATGCAGTTATAGACAA AGATAAAACAAGTGCGTTGTTGGGTGCTAATATTCAATGCGATCAATTGATTATTTTAAC AGCAATTGATTATGTATATATTAATTTTAACACTGAAAACCAACAGCCTTTGAAAACAAC AAATGTTGATGAATTAAAACGATATATAGACGAAAATCAATTTGCAAAAGGAAGTATGTT ACCAAAAATTGAAGCAGCCATATCATTTATTGAAAACAATCCAAAAGGAAGTGTGCTTAT AACATCATTAAATGAATTAGATGCTGCCTTAGAGGGTAAAGTAGGTACTGTGATTAAAAA GTAATTGAATTGAAACGCTTTTCAATTACTATATGTCAAATGCATGATTTTTATTATTTA TGTGCACCCCCTGAAAATAATGCCTCTATTTTGATGCGGGGTGCACTTTCTTAATTTATA TTTATAAAATCTTTAAGGTAGAAATGCTAGGTTAAATGTCGAAGGAGATGAAACCGTGGA AAATACAATTAATGAAAGTGAAAAGAAAAAACGATTTAAATTAAAAATGCCAGGTGCATT TATGATTTTATTCATTTTAACGGTTGTTGCAGTTATAGCAACATGGGTTATTCCTGCTGG TGCATATTCTAAACTTTCTTACGAACCTTCATCCCAAGAACTAAAGATAGTTAACCCTCA TAACCAAGTGAAAAAGGTTCCGGGTACGCAACAGGAACTAGACAAAATGGGGGTTAAAAT TAAGATTGAACAATTTAAATCAGGTGCAATTAATAAGCCAGTATCAATTCCGAATACTTA TGAAAGATTAAAGCAACATCCAGCTGGACCAGAACAAATAACAAGTAGCATGGTTGAAGG TACGATAGAAGCGGTCGATATCATGGTATTCATTCTTGTACTAGGGGGACTTATTGGCGT AGTTCAAGCCAGTGGTTCTTTTGAATCGGGATTGTTAGCTTTAACGAAGAAAACAAAAGG GCATGAATTTATGCTAATTGTGTTTGTATCAATACTAATGATTATCGGCGGGACGTTATG TGGTATTGAAGAAGAAGCTGTAGCATTCTATCCGATTTTAGTCCCTATATTTATAGCGTT AGGATACGATTCTATCGTTTCAGTTGGTGCCATATTCCTTGCCAGCTCTGTCGGTAGTAC ATTTTCAACTATTAACCCGTTCTCGGTTGTAATTGCCTCTAATGCCGCTGGTACAACTTT TACGGATGGCTTGTATTGGAGAATAGGTGCTTGTATTGTCGGTGCGATTTTTGTTATTAG TTATTTATATTGGTACTGTAAAAAAATTAAAAACGATCCTAAAGCGTCATATTCTTATGA AGACAAAGATGCTTTTGAACAGCAATGGTCTGTATTAAAAGATGACGATAGTGCCCATTT TACTTTGCGTAAGAAGATAATCCTTACATTATTTGTACTACCATTTCCAATTATGGTATG GGGAGTTATGACGCAAGGTTGGTGGTTCCCAGTTATGGCTTCAGCATTTTTAATATTTAC AATTATAATAATGTTTATTGCTGGGACAGGTAAATCTGGATTGGGAGAAAAAGGAACTGT AGATGCATTTGTCAATGGTGCATCAAGTTTAGTAGGTGTATCTTTAATTATTGGTTTAGC TCGAGGTATTAATTTAGTGTTGAATGAAGGTATGATTTCAGATACAATCTTACACTTTTC ATCATCTTTAGTTCAACATATGAGTGGACCATTATTTATCATCGTATTACTATTTATTTT CTTCTGTTTAGGTTTTATCGTGCCATCATCTTCTGGATTAGCGGTATTATCAATGCCTAT CTTTGCACCACTAGCTGATACAGTAGGTATACCAAGATTCGTCATCGTTACGACATATCA ATTTGGTCAATATGCGATGTTATTCTTAGCGCCGACTGGACTTGTTATGGCCACACTACA AATGTTAAACATGCGATATTCACATTGGTTCCGATTTGTATGGCCGGTAGTTGCTTTTGT ATTGATTTTCGGTGGCGGAGTACTAATTACGCAAGTACTAATTTATTCATAATTTGAAAT GCTATATTATAAAAATACTAATTGGGTTTTATGCATCTCGTAGGTTTGTAGAAATACTAA ACTAAGCGAGGTGCATTATTATTTTTGATTAAGAAAATAATGACGGTAATGATAACACTA GTAAGTAATTGATACAATGCTCTATTTAATAATGATATTTTTAAAATTTGTTTTTAATGT AATGTTAGATCTATGGTATATTATATTTATCGTGGTAAATATGTATTTGCTGTAAACAGT TTTTGTAACACATGACACATATGGTTGTGAAAATAGCATATATAAAGGATGGCTATAAAT GACACATTTGACAAAGGTTTTAGATACACTAACTGGAATATGCGTAGTATTATTATTTAG TAAATATTTTGTGGCGTATGCAAATATGGTGTTTGATTGGAATTTAAGATGGTATTTGCT AGAAAACATACCACATTTGCCAATTATATTATTTATTCTGATGTTTATTTTCGGAGTACC TTCTGAAATGATAAAAGATAGGCAAAGGAAAAATAACGGTGTTTAATTTATCGATATTTA GAGGTGATAAAATTTGTCAACTATTACAAAGACTAAAATAAAAATCTTTATTAATTATTT TATTGGTATATTAGCCTTGGCGTTTGCTGCTTATATATTATTTAAATAAAGGTTAGAGTG AAACGTGTTTATGAACTAGACGTTCTAGTATAGTTACTACAGCTTTAGTCAGAAGGTATC ATTGATAAGATCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTA CCTGCCTCTTTTTTAGTTATTAAATATGCGTGTTAATTCTTGGTAATAGTGTTACTGAGA CGCATTACGAAGAAATTTATCTTGATTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTAT AAAGACTCTAAGTACTATTACAGTGGCTAATAACACTTCGATAAACAAAAGACCTTTCCA AATATCTGGAAACATAAGTACAGGCAAACTGTTCTTTAAAGCAGTTGCTGAGATTACTAA AGGGAATGTGAAAGCTGAAAATACGGGCGAAAAAGGTTCTTTTAGTAATTTAGGCAATTG TATAATGATATAAAAATAAAATATTTGAGCTAATATTAAAAATATAATTACGATAAAAGC ATTCGCCTTAGGAAAGGCTATAACATATGCTGCAGCGACTAAAGAAAATGGTGCACAAAT TGTCGATGTGTTCGGTTTGATTGACGTCTGCAATGGAAATGCTTTTAATCGCTTGAAAAC AATAGGTAAGACAATACAAGTAGCTACAAAGCCATATATTACTGTTAATTGACCTATGAA AAAACATCCGCTAACGGGTGCCGTCAATCCTGCGATAGCAATACCAATAAAAAGTACAGT CCACGAAGGATAAACATTTTCAAGTGAAAAATCTTTTAAATATTTTATTGAAAAAATAAT CATATGCGTCATAATTCCCACAAGGCATAAAATCCAAATAGGCGTTATTAAGCTATTGAT AAAAGTTATGTTACTAAAAAATGTATTTAAATAAGTAGTACCTAAAAAGCCAGACATGAA AAATGTTGTGAACACTGATGAAACTAGAGGACTGTTTAATTGTTCTTTCACATTATTAAA ATATTTGATCATAGTACATAAAAGGTGAATCCAAATCAAGAAAGCAAAGATTCCGCAAAC AGCGTTTAAAGTAAGAGATAAGTCTTTTAATAGATTACCCAGGCCTAATAATCCTAAGAC TAGTCCTGACGTTACTAGAGGTGCTTTTTGAAGTCTCATGATTTACAACCTTTCTTATGT GATTTTCTTCACTAATTATATCATGATAGCTATGGCCAATTAATAAGAAGAGTGTGTACT ATTACGTTATTAGAGTATGTATATTGGATTGATAGACACATAATTGACATTTAAATCTCA AAATTAATGATATTTGAGGTATGCTTTGCAACCTAAATATTGGAATATGTGGAAAAGTAA TTATTTAATTTAAATGATGATTGAAGATTTACAAGGGGGTGTACAAAATGAGAAATCAAA TTCAAAAACTATTAGACAGTGATTTGAGCAGTTTACATATATCGAAACAAACAGGAGTTC CACAAAGCACAATACACAGAATGAGAAAAAAAGAAAGATCATTAGACAATATGTCATTGA AAAACGCTGAACTACTTTATAAATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAG AATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTA AATGTATTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATC AAAATCTATAGGAATAATATAATAATAAAAATCTCTACGCATGCAAATGGTGAGTGTTAA AAATCTTGGTGTAGTGTTGGTGTAGTTCAGGTGCAGTATAGATGAAATTTGAGCACAAAA TTACTTAATTAAAAATGTATAAACAAGTGTCAGACGCGTGTCAATTGTGTGTCAAAAAAT TCTATGACGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGAC GTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCA CGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTC GAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAGCTACCAGGACACG TTTAACAACACAAGAATTATTATATCTAAATGAACTTAAATTAGCAATACCTTGTAAATA AAAAATGTTTATATTTTTCACTATTATAGAGCTATTTATCTAAAAAGGTTCAATAAGACT TAAATGCGAATTCAGGCAACTTAATTGTGTTAAATACAGTTTTGAATGCCTAACTGTATT TCTTTTCTCTTTAAAATACAGTTAAGTACATTATAAGATGTTGTGCGGATAAACAAACTA ATTGCATCAAATTTATTTTAAAATAACAACAACAAAACGTTAAGCGAATAACATTTCGGT GATTTAAAAGCTACGCACGTTTTTGTTATCTTCAAATTTAAATTTTAAGGAGTGTTTTCA ATGGAAGGTTTATTTAACGCAATTAAAGATACCGTAACTGCAGCAATTAATAATGATGGC GCAAAATTAGGCACAAGCATTGTGAGCATCGTTGAAAATGGCGTAGGTTTATTAGGTAAA TTATTCGGATTCTAATTTCAATATGTTATGTAAGTAATCAGTATTATTTCAAAGGTGAGG GAGAGATTTAAATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAAC AACATGATAGTGTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTT TACTAGGTAAATTATTTGGATTCTAATATAATAACTAATATTCTTTAAAATAAACTGGGT GAGCATACTTTAATGTTATGCACTCAGTTTATTTTATTTGCAGAAATTTGAGCCTCTGTTRoary-3.8.0/t/data/reorder_isolates.tre000066400000000000000000000000711304207556500200600ustar00rootroot00000000000000(query_1:6.0,(query_3:5.0,query_4:3.0):5.0,query_2:11.0);Roary-3.8.0/t/data/reorder_isolates_expected_output.csv000066400000000000000000000014111304207556500233610ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","","" Roary-3.8.0/t/data/reorder_isolates_expected_output_breadth_alpha.csv000066400000000000000000000014111304207556500262170ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","","" Roary-3.8.0/t/data/reorder_isolates_expected_output_breadth_creation.csv000066400000000000000000000014111304207556500267360ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","","" Roary-3.8.0/t/data/reorder_isolates_expected_output_breadth_height.csv000066400000000000000000000014111304207556500264020ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","","" Roary-3.8.0/t/data/reorder_isolates_expected_output_breadth_revalpha.csv000066400000000000000000000014111304207556500267340ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","","" Roary-3.8.0/t/data/reorder_isolates_expected_output_depth_alpha.csv000066400000000000000000000014111304207556500257120ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","","" Roary-3.8.0/t/data/reorder_isolates_expected_output_depth_creation.csv000066400000000000000000000014111304207556500264310ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","","" Roary-3.8.0/t/data/reorder_isolates_expected_output_depth_height.csv000066400000000000000000000014111304207556500260750ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","","" Roary-3.8.0/t/data/reorder_isolates_expected_output_depth_revalpha.csv000066400000000000000000000014111304207556500264270ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","","" Roary-3.8.0/t/data/reorder_isolates_input.csv000066400000000000000000000014001304207556500212750ustar00rootroot00000000000000"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences","Avg sequences per isolate","Genome Fragment","Order within Fragment","Accessory Fragment","Accessory Order with Fragment","QC","query_1","query_2","query_3" "hly","","Alpha-toxin","3","3","1","","","","","","1_1","2_1","3_1" "argF","","Ornithine carbamoyltransferase","2","2","1","","","","","","1_3","","3_3" "group_4","","","2","2","1","","","","","","","2_4","3_4" "speH","","hypothetical protein","2","2","1","","","","","","1_2","2_2","" "group_7","","Gonococcal growth inhibitor III","1","1","1","","","","","","","2_7","" "yfnB","","Putative HAD-hydrolase yfnB","1","1","1","","","","","","","","3_5" "group_6","","Gonococcal growth inhibitor III","1","1","1","","","","","","1_6","",""Roary-3.8.0/t/data/sequences_with_unknowns.faa000066400000000000000000000027021304207556500214430ustar00rootroot00000000000000>1234_00186 GGDEF family protein MNFENEYDLEKLVNNSLDLLTIVDLSGNVLLVNPAFERTLGWKKEDLVGKDPFHLLHPED KESTYKEFEKLNQGLLTLSFQNRYICADGQYRYFSWTASPDLVSGLVYVTGRDITDVIES NRKISQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIHACDKESHPLSLLMID ADHFKDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEFIAALPNTSEPEANQI AERLVQTVREFSWEKRSVTISVGITTYNFNPTSKSINSEYLLNLIEQADKALYCSKVSGR XXXXXXXXXXXXXXXXXXXYYI* >1234_00325 only a few unknowns so keep MAFDPSVPQQQAQAPAGTLLFPEGSSANTLNVLHSGTVRYLTEVPGGRKLELFKLNGANL TPGSVALFTSGRYPFHLQAEEACVISTYAMNRDTISKSVGSRVSLGLMVARTLLREITEL FKKSNQIRKITSEIEKVNDNLSILYYQFNPSVFPDIKPGSPIPEVSADVVDPVMRLCREN LKLFFDNGGILPDRPSPQFLEEEHESQLTRLYPEEIDFQDGEFNFIRKLVMQDPKILNVL FTADPSMLAYVCSKLANVLDQISGILKTCLTDLDEAFRIFFIGENSLVEKFYLILDITSS GYGTAPAEFVIPVLGAFAGKIEKYKNGHQALFGVPVANISPNTQAFQSKAVTLAKKMEET APKVQAPVTSSATAGVDVDAIRKELDNSASVIIQFSGLGAEQIKEFSALMVKVKSLKNPL DPEGDNRKVRRTLGRHYWDMYQECFTKYMNSNRNVPKPVELMLKYGYFDETLVDDSQIAF MYTQKDPANFTSNVPISLGTEWLEKVFKREVPTSLDEMGQNFFEKVKLENRNIVIKKESD IPPELDNPDTRLKFEFASLYEANVRLTSGSPATHFPILTKFHSQMAIDKSYVSKKILEEV VHELMAVDYSIFHREVIYNNNELGITKEFIQKCVIPDFILVPSIGTKVMMWQDLSIHRGA GSKESPGRIVLPIFAQGDLKTMVADALAAFRWELTKSILGAEWNNVGNPSITADYTDYIQ FFKKNKDLSMEIKEKLASDFKRFRNDRDIFANDYQLWMKYEADGVQRLNKVVRGIFYRHI PFSKQVRDKVAXXXXXXXXXXXXXLLPLQRSITDLLILEIENILK* >1234_00377 Uncharacterized protein conserved in bacteria MTLNEFAKNVLFGSGLEDKLFSPPVHPVDIRSFDFLNVPSLPAREKKIQISEQKSKIPRL EQLFNEENRIITLHHFANHELMAIELFAWAILKFQDAPSSIRFGLYRTLLEEQTHLKMYL SEMKKGGMELGDRPLNFIFWKQVPKMQTLEKFXXXXXXXXXXXXXXXXXF* Roary-3.8.0/t/data/shred1.gff000066400000000000000000000015741304207556500156620ustar00rootroot00000000000000##gff-version 3 ##sequence-region shredA 1 40 ##sequence-region shredB 1 40 shredA Prodigal:2.60 CDS 179 1471 . - 0 ID=11983_1#21_00001;eC_number=2.7.13.3;gene=regB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_005150533.1,similar to AA sequence:UniProtKB:Q3J6C1,protein motif:CLUSTERS:PRK11360,protein motif:Cdd:COG4191,protein motif:TIGRFAMs:TIGR02966,protein motif:Pfam:PF02518.20;locus_tag=11983_1#21_00001;product=integral membrane sensor signal transduction histidine kinase,Sensor histidine kinase regB,sensory histidine kinase AtoS,Signal transduction histidine kinase regulating C4-dicarboxylate transport system,phosphate regulon sensor kinase PhoR,Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase;protein_id=gnl|SC|11983_1#21_00001 ##FASTA >shredA AAAAAAAAAACCCCCCCCCCGGGGGGGGGGTTTTTTTTTT >shredB AAAAAAAAAACCCCCCCCCCGGGGGGGGGGTTTTTTTTTT Roary-3.8.0/t/data/shred1.shred.fa000066400000000000000000000002501304207556500166000ustar00rootroot00000000000000>shred1_1 AAAAAAAAAA >shred1_2 CCCCCCCCCC >shred1_3 GGGGGGGGGG >shred1_4 TTTTTTTTTT >shred1_5 AAAAAAAAAA >shred1_6 CCCCCCCCCC >shred1_7 GGGGGGGGGG >shred1_8 TTTTTTTTTT Roary-3.8.0/t/data/shred2.gff000066400000000000000000000015741304207556500156630ustar00rootroot00000000000000##gff-version 3 ##sequence-region shredA 1 40 ##sequence-region shredB 1 40 shredA Prodigal:2.60 CDS 179 1471 . - 0 ID=11983_1#21_00001;eC_number=2.7.13.3;gene=regB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_005150533.1,similar to AA sequence:UniProtKB:Q3J6C1,protein motif:CLUSTERS:PRK11360,protein motif:Cdd:COG4191,protein motif:TIGRFAMs:TIGR02966,protein motif:Pfam:PF02518.20;locus_tag=11983_1#21_00001;product=integral membrane sensor signal transduction histidine kinase,Sensor histidine kinase regB,sensory histidine kinase AtoS,Signal transduction histidine kinase regulating C4-dicarboxylate transport system,phosphate regulon sensor kinase PhoR,Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase;protein_id=gnl|SC|11983_1#21_00001 ##FASTA >shredA AAAAAAAAAAGGGGGGGGGGTTTTTTTTTTCCCCCCCCCC >shredB AAAAAAAAAACCCCCCCCCCTTTTTTTTTTGGGGGGGGGG Roary-3.8.0/t/data/shred2.shred.fa000066400000000000000000000002501304207556500166010ustar00rootroot00000000000000>shred2_1 AAAAAAAAAA >shred2_2 GGGGGGGGGG >shred2_3 TTTTTTTTTT >shred2_4 CCCCCCCCCC >shred2_5 AAAAAAAAAA >shred2_6 CCCCCCCCCC >shred2_7 TTTTTTTTTT >shred2_8 GGGGGGGGGG Roary-3.8.0/t/data/sopB.fa.aln000066400000000000000000000066041304207556500157730ustar00rootroot00000000000000>11111_1#11_04059 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGAAAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACA TCT >22222_2#22_04059 ATGCAAATACAGAGCTTCTATCACTCAGCTTCACTAAAAACCCAGGAGGCTTTTAAAAGC CTACAAAAAACCTTATACAACGGAATGCAGATTCTCTCAGGCCAGGGCAAAGCGCCGGCT AAAGCGCCCGACGCTCGCCCGGAAATTATTGTCCTGCGAGAACCTGGCGCGACATGGGGG AATTATCTACAGCATCAGAAGACGTCTAACCACTCGCTGCATAACCTCTATAACTTACAG CGCGATCTTCTTACCGTCGCGGCAACCGTTCTGGGTAAACAAGACCCGGTTCTAACGTCA ATGGCAAACCAAATGGAGTTAGCCAAAGTTAAAGCGGACCGGCCAGCAACAAAACAAGAA GAAGCTGCGGCAAAAGCATTGAAGAAAAATCTTATCGAACTTATTGCAGCACGCACTCAG CAGCAAAATGGCTTACCTGCAAAAGAAGCTCATCGCTTTGCGGCAGTAGCGTTTAGAGAT GCTCAGGTCAAGCAGCTCAATAACCAGCCCTGGCAAACCATAAAAAATACACTCACGCAT AACGGGCATCACTATACCAACACGCAGCTCCCTGCCGCAGAGATGAAAATCGGCGCAAAA GATATCTTTCCCAGTGCTTATGAGGGAAAGGGCGTATGCAGTTGGGATACCAAGAATATT CATCACGCCAATAATTTGTGGATGTCCACGGTGAGTGTGCATGAGGACGGTAAAGATAAA ACGCTTTTTTGCGGGATACGTCATGGTGTGCTTTCCCCCTATCATGAAAAAGATCCGCTT CTGCGTCAGGCCGGCGCTGAAAACAAAGCCAAAGAAGTATTAGCTGCGGCACTTTTTAGT AAACCTGAGTTGCTTAACAGAGCCTTAGAGGGCGAAGCGGTAAGCCTGAAACTGGTATCC GTCGGGTTACTCACCGCGTCGAATATTTTCGGCAAAGAGGGAACTATGGTCGAGGATCAA ATGCGCGCATGGCAATCGTTGACCCAGCCGGGAAAAATGATTCATTTAAAAATCCGCAAT AAAGATGGCGATCTACAGACGGTAAAAATAAAACCGGACGTCGCCGCATTTAATGTGGGT GTTAATGAGCTGGCGCTCAAGCTCGGCTTTGGCCTTAAAGCATCAGATAGCTATAATGCC GAAGCGCTACATCAGTTATTAGGCAATGATTTACGCCCTGAAGCCAGACCAGGTGGCTGG GTTGGCGAATGGCTGGCGCAATACCCGGATAATTATGAGGTCGTCAATACATTAGCGCGC CAGATTAAGGATATCTGGAAAAATAACCAACATCATAAAGATGGCGGCGAACCCTATAAA CTCGCACAACGCCTTGCCATGTTAGCCCATGAAATTGACGCGGTGCCCGCCTGGAATTGT AAAAGCGGCAAAGATCGTACAGGGATGATGGATTCAGAAATCAAGCGAGAGCTCATTTCT TTCCATCAGACCCATATGTTAAGTGCGCCTGGTAGTCTTCCGGATAGCGGTGGACAGAAA ATTTTCCAAAAAGTATTACTGAATAGCGGTAACCTGGAGATTCAGAAACAAAATACGGGC GGGGCGGGAAACAAAGTAATGAAAAATTTATCGCCAGAGGTGCTCAATCTTTCCTATCAA AAACGAGTTGGGGATGATAATATTTGGCAGTCAGTAAAAGGTATTTCTTCATTAATCACA TCT Roary-3.8.0/t/data/speH.fa.aln000066400000000000000000000027201304207556500157620ustar00rootroot00000000000000>2_2 ATGAACAATAACATCACGAAAAAAATTATTTTATCAACAACATTGTTACT ATTAGGTACAGCATTTACACAATTTCCTAATACACCTATCAATTCTTCAT CTGAAGCGAAAGCTTATTATATAAATCAAAACGAAACTAACGTTAATGAG TTAACTAAATATTACTCGCAAAAATATTTAACCTTCTCTAACAGTACGTT ATGGCAAAAAGATAACGGTACGATTCATGCAACGTTGTTACAGTTTTCTT GGTATAGTCATATTCAAGTTTATGGACCTGAAAGTTGGGGCAATATCAAC CAATTAAGAAATAAAAGCGTTGATATTTTTGGCATAAAAGACCAAGAAAC CATTGATTCTTTTGCATTATCTCAAGAAACGTTTACTGGTGGTGTTACTC CTGCAGCAACATCTAACGATAAACACTATAAACTGAATGTAACATATAAA GATAAAGCAGAAACGTTTACTGGCGGATTTCCAGTTTATGAAGGCAATAA GCCTGTTTTAACTTTAAAAGAATTAGATTTTCGTATTCGTCAAACATTAA TTAAAAGTAAAAAATTATATAATAATTCTTATAATAAAGGACAAATTAAA ATAACAGGTACAGACAATAACTACACAATAGATTTAAGTAAAAGGTTGCC ATCAACTGATGCAAATAGATATGTTAAAAAACCTCAAAATGCAAAAATTG AAGTTATCCTCGAAAAATCAAAC >1_2 ATGAACAATAACATCACGAAAAAAATTATTTTATCAACAACATTGTTACT ATTAGGTACAGCATTTACACAATTTCCTAATACACCTATCAATTCTTCAT CTGAAGCGAAAGCTTATTATATAAATCAAAACGAAACTAACGTTAATGAG TTAACTAAATATTACTCGCAAAAATATTTAACCTTCTCTAACAGTACGTT ATGGCAAAAAGATAACGGTACGATTCATGCAACGTTGTTACAGTTTTCTT GGTATAGTCATATTCAAGTTTATGGACCTGAAAGTTGGGGCAATATCAAC CAATTAAGAAATAAAAGCGTTGATATTTTTGGCATAAAAGACCAAGAAAC CATTGATTCTTTTGCATTATCTCAAGAAACGTTTACTGGTGGTGTTACTC CTGCAGCAACATCTAACGATAAACACTATAAACTGAATGTAACATATAAA GATAAAGCAGAAACGTTTACTGGCGGATTTCCAGTTTATGAAGGCAATAA GCCTGTTTTAACTTTAAAAGAATTAGATTTTCGTATTCGTCAAACATTAA TTAAAAGTAAAAAATTATATAATAATTCTTATAATAAAGGACAAATTAAA ATAACAGGTACAGACAATAACTACACAATAGATTTAAGTAAAAGGTTGCC ATCAACTGATGCAAATAGATATGTTAAAAAACCTCAAAATGCAAAAATTG AAGTTATCCTCGAAAAATCAAAC Roary-3.8.0/t/data/split_groups/000077500000000000000000000000001304207556500165335ustar00rootroot00000000000000Roary-3.8.0/t/data/split_groups/paralog_clusters1000066400000000000000000000003031304207556500221040ustar00rootroot00000000000000abc_02 def_02 abc_03 def_03 abc_04 def_04 abc_05 def_05 abc_12 def_12 abc_06 def_06 abc_07 def_07 abc_08 def_08 abc_09 def_09 abc_10 def_10 abc_11 def_11 abc_13 def_13 abc_14 def_14 abc_15 def_15Roary-3.8.0/t/data/split_groups/paralog_clusters2000066400000000000000000000002471304207556500221140ustar00rootroot00000000000000abc_02 def_03 abc_03 def_04 abc_05 def_05 abc_12 def_12 abc_06 def_06 abc_07 def_07 abc_08 def_08 abc_09 def_09 abc_10 def_10 abc_13 def_13 abc_14 def_14 abc_15 def_15Roary-3.8.0/t/data/split_groups/paralog_clusters3000066400000000000000000000003121304207556500221060ustar00rootroot00000000000000abc_02 def_02 abc_03 def_03 abc_04 def_04 abc_05 def_05 abc_12 def_12 abc_20 abc_06 def_06 abc_07 def_07 abc_08 def_08 abc_09 def_09 abc_10 def_10 abc_11 def_11 abc_13 def_13 abc_14 def_14 abc_15 def_15Roary-3.8.0/t/data/split_groups/paralog_clusters4000066400000000000000000000004271304207556500221160ustar00rootroot00000000000000abc_02 def_02 abc_03 def_03 abc_04 def_04 abc_05 def_05 ghi_05 abc_12 def_12 abc_20 abc_13 def_14 def_25 ghi_23 abc_06 def_06 ghi_06 abc_07 def_07 ghi_07 abc_08 def_08 abc_09 def_09 abc_10 def_10 abc_11 def_11 abc_14 def_13 abc_15 def_15 abc_22 def_22 ghi_22 abc_23 def_23 ghi_23Roary-3.8.0/t/data/split_groups/paralog_exp_clusters1000066400000000000000000000003041304207556500227610ustar00rootroot00000000000000abc_02 def_02 abc_03 def_03 abc_04 def_04 abc_05 def_05 abc_12 def_12 abc_06 def_06 abc_07 def_07 abc_08 def_08 abc_09 def_09 abc_10 def_10 abc_11 def_11 abc_13 def_13 abc_14 def_14 abc_15 def_15 Roary-3.8.0/t/data/split_groups/paralog_exp_clusters2000066400000000000000000000002501304207556500227620ustar00rootroot00000000000000abc_02 def_03 abc_03 def_04 abc_05 def_05 abc_12 def_12 abc_06 def_06 abc_07 def_07 abc_08 def_08 abc_09 def_09 abc_10 def_10 abc_13 def_13 abc_14 def_14 abc_15 def_15 Roary-3.8.0/t/data/split_groups/paralog_exp_clusters3000066400000000000000000000003131304207556500227630ustar00rootroot00000000000000abc_02 def_02 abc_03 def_03 abc_04 def_04 abc_05 def_05 abc_12 def_12 abc_20 abc_06 def_06 abc_07 def_07 abc_08 def_08 abc_09 def_09 abc_10 def_10 abc_11 def_11 abc_13 def_13 abc_14 def_14 abc_15 def_15 Roary-3.8.0/t/data/split_groups/paralog_exp_clusters4000066400000000000000000000004301304207556500227640ustar00rootroot00000000000000abc_02 def_02 abc_03 def_03 abc_04 def_04 abc_05 def_05 ghi_05 abc_12 def_12 abc_20 def_25 ghi_23 abc_13 def_14 abc_06 def_06 ghi_06 abc_07 def_07 ghi_07 abc_08 def_08 abc_09 def_09 abc_10 def_10 abc_11 def_11 abc_14 def_13 abc_15 def_15 abc_22 def_22 ghi_22 abc_23 def_23 ghi_23 Roary-3.8.0/t/data/split_groups/paralogs1.fa000066400000000000000000000012731304207556500207370ustar00rootroot00000000000000>abc_01 AAAAAAAAAAAAAAAAAAA >abc_02 AAAAAAAAAAAAAAAAAAA >abc_03 AAAAAAAAAAAAAAAAAAA >abc_04 AAAAAAAAAAAAAAAAAAA >abc_05 AAAAAAAAAAAAAAAAAAA >abc_06 AAAAAAAAAAAAAAAAAAA >abc_07 AAAAAAAAAAAAAAAAAAA >abc_08 AAAAAAAAAAAAAAAAAAA >abc_09 AAAAAAAAAAAAAAAAAAA >abc_10 AAAAAAAAAAAAAAAAAAA >abc_11 AAAAAAAAAAAAAAAAAAA >abc_12 AAAAAAAAAAAAAAAAAAA >abc_13 AAAAAAAAAAAAAAAAAAA >abc_14 AAAAAAAAAAAAAAAAAAA >abc_15 AAAAAAAAAAAAAAAAAAA >abc_16 AAAAAAAAAAAAAAAAAAA >abc_17 AAAAAAAAAAAAAAAAAAA >abc_18 AAAAAAAAAAAAAAAAAAA >abc_19 AAAAAAAAAAAAAAAAAAA >abc_20 AAAAAAAAAAAAAAAAAAA >abc_21 AAAAAAAAAAAAAAAAAAA >abc_22 AAAAAAAAAAAAAAAAAAA >abc_23 AAAAAAAAAAAAAAAAAAA >abc_24 AAAAAAAAAAAAAAAAAAA >abc_25 AAAAAAAAAAAAAAAAAAARoary-3.8.0/t/data/split_groups/paralogs2.fa000066400000000000000000000012731304207556500207400ustar00rootroot00000000000000>def_01 AAAAAAAAAAAAAAAAAAA >def_02 AAAAAAAAAAAAAAAAAAA >def_03 AAAAAAAAAAAAAAAAAAA >def_04 AAAAAAAAAAAAAAAAAAA >def_05 AAAAAAAAAAAAAAAAAAA >def_06 AAAAAAAAAAAAAAAAAAA >def_07 AAAAAAAAAAAAAAAAAAA >def_08 AAAAAAAAAAAAAAAAAAA >def_09 AAAAAAAAAAAAAAAAAAA >def_10 AAAAAAAAAAAAAAAAAAA >def_11 AAAAAAAAAAAAAAAAAAA >def_12 AAAAAAAAAAAAAAAAAAA >def_13 AAAAAAAAAAAAAAAAAAA >def_14 AAAAAAAAAAAAAAAAAAA >def_15 AAAAAAAAAAAAAAAAAAA >def_16 AAAAAAAAAAAAAAAAAAA >def_17 AAAAAAAAAAAAAAAAAAA >def_18 AAAAAAAAAAAAAAAAAAA >def_19 AAAAAAAAAAAAAAAAAAA >def_20 AAAAAAAAAAAAAAAAAAA >def_21 AAAAAAAAAAAAAAAAAAA >def_22 AAAAAAAAAAAAAAAAAAA >def_23 AAAAAAAAAAAAAAAAAAA >def_24 AAAAAAAAAAAAAAAAAAA >def_25 AAAAAAAAAAAAAAAAAAARoary-3.8.0/t/data/split_groups/paralogs3.fa000066400000000000000000000012731304207556500207410ustar00rootroot00000000000000>ghi_01 AAAAAAAAAAAAAAAAAAA >ghi_02 AAAAAAAAAAAAAAAAAAA >ghi_03 AAAAAAAAAAAAAAAAAAA >ghi_04 AAAAAAAAAAAAAAAAAAA >ghi_05 AAAAAAAAAAAAAAAAAAA >ghi_06 AAAAAAAAAAAAAAAAAAA >ghi_07 AAAAAAAAAAAAAAAAAAA >ghi_08 AAAAAAAAAAAAAAAAAAA >ghi_09 AAAAAAAAAAAAAAAAAAA >ghi_10 AAAAAAAAAAAAAAAAAAA >ghi_11 AAAAAAAAAAAAAAAAAAA >ghi_12 AAAAAAAAAAAAAAAAAAA >ghi_13 AAAAAAAAAAAAAAAAAAA >ghi_14 AAAAAAAAAAAAAAAAAAA >ghi_15 AAAAAAAAAAAAAAAAAAA >ghi_16 AAAAAAAAAAAAAAAAAAA >ghi_17 AAAAAAAAAAAAAAAAAAA >ghi_18 AAAAAAAAAAAAAAAAAAA >ghi_19 AAAAAAAAAAAAAAAAAAA >ghi_20 AAAAAAAAAAAAAAAAAAA >ghi_21 AAAAAAAAAAAAAAAAAAA >ghi_22 AAAAAAAAAAAAAAAAAAA >ghi_23 AAAAAAAAAAAAAAAAAAA >ghi_24 AAAAAAAAAAAAAAAAAAA >ghi_25 AAAAAAAAAAAAAAAAAAARoary-3.8.0/t/data/split_pan_genome_sequences/000077500000000000000000000000001304207556500213775ustar00rootroot00000000000000Roary-3.8.0/t/data/split_pan_genome_sequences/argF.fa000066400000000000000000000040001304207556500225600ustar00rootroot00000000000000>1_3 ATGAAAAATTTACGAAACAGAAGTTTTTTAACTTTATTAGACTTTTCACGACAAGAGGTA GAATTCTTATTAACACTCTCCGAGGATTTAAAACGTGCTAAATATATTGGCACTGAAAAG CCTATGTTAAAAAATAAAAATATTGCACTGTTATTTGAAAAAGATTCTACAAGAACGCGA TGTGCATTTGAAGTTGCAGCGCATGATCAAGGTGCAAATGTAACTTATTTAGGCCCAACT GGATCACAAATGGGTAAAAAAGAAACAACTAAAGATACTGCACGTGTGCTTGGTGGAATG TATGATGGCATTGAATACCGTGGTTTTTCACAAAGAACAGTAGAAACTTTAGCTGAAAAT TCAGGCGTACCAGTGTGGAATGGTTTAACTGATGAAGATCATCCTACTCAAGTTCTTGCT GATTTCTTAACAGCAAAAGAAGTCTTAAAAAAAGATTATGCAGATATTAACTTTACATAT GTTGGAGATGGTCGTAATAACGTTGCAAATGCATTAATGCAAGGTGCTGCCATTATGGGT ATGAACTTCCATTTAGTTTGTCCAAAAGAATTAAATCCAACAGATGAATTATTAAATCGC TGTAAAAATATTGCCGCTGAAAATGGTGGCAACATATTAATCACAGATGATATTGACCAA GGTGTAAAAGGTTCGGATGTAATTTACACTGATGTTTGGGTATCAATGGGTGAACCTGAT GAAGTATGGAAAGAACGACTTGAATTATTGAAACCATATCAAGTAAATAAAGAAATGATG GATAAAACTGGTAATCCAAATGTTATTTTTGAGCATTGCTTACCATCTTTCCATAATGCT GATACGAAAATTGGTCAACAAATTTTTGAAAAATATGGTATTCGAGAAATGGAAGTTACA GATGAAGTATTCGAAAGTAAAGCTTCAGTTGTATTCCAAGAAGCTGAGAACAGAATGCAT ACAATCAAAGCAGTCATGGTTGCTACATTGGGTGAATTTTAA >3_3 ATGAAAAATTTACGAAACAGAAGTTTTTTAACTTTATTAGACTTTTCACGACAAGAGGTA GAATTCTTATTAACACTCTCCGAGGATTTAAAACGTGCTAAATATATTGGCACTGAAAAG CCTATGTTAAAAAATAAAAATATTGCACTGTTATTTGAAAAAGATTCTACAAGAACGCGA TGTGCATTTGAAGTTGCAGCGCATGATCAAGGTGCAAATGTAACTTATTTAGGCCCAACT GGATCACAAATGGGTAAAAAAGAAACAACTAAAGATACTGCACGTGTGCTTGGTGGAATG TATGATGGCATTGAATACCGTGGTTTTTCACAAAGAACAGTAGAAACTTTAGCTGAAAAT TCAGGCGTACCAGTGTGGAATGGTTTAACTGATGAAGATCATCCTACTCAAGTTCTTGCT GATTTCTTAACAGCAAAAGAAGTCTTAAAAAAAGATTATGCAGATATTAACTTTACATAT GTTGGAGATGGTCGTAATAACGTTGCAAATGCATTAATGCAAGGTGCTGCCATTATGGGT ATGAACTTCCATTTAGTTTGTCCAAAAGAATTAAATCCAACAGATGAATTATTAAATCGC TGTAAAAATATTGCCGCTGAAAATGGTGGCAACATATTAATCACAGATGATATTGACCAA GGTGTAAAAGGTTCGGATGTAATTTACACTGATGTTTGGGTATCAATGGGTGAACCTGAT GAAGTATGGAAAGAACGACTTGAATTATTGAAACCATATCAAGTAAATAAAGAAATGATG GATAAAACTGGTAATCCAAATGTTATTTTTGAGCATTGCTTACCATCTTTCCATAATGCT GATACGAAAATTGGTCAACAAATTTTTGAAAAATATGGTATTCGAGAAATGGAAGTTACA GATGAAGTATTCGAAAGTAAAGCTTCAGTTGTATTCCAAGAAGCTGAGAACAGAATGCAT ACAATCAAAGCAGTCATGGTTGCTACATTGGGTGAATTTTAA Roary-3.8.0/t/data/split_pan_genome_sequences/different.fa000066400000000000000000000036631304207556500236650ustar00rootroot00000000000000>1_1 ATGAAAACACGTATAGTCAGCTCAGTAACAACAACACTATTGCTAGGTTCCATATTAATG AATCCTGTCGCTAATGCCGCAGATTCTGATATTAATATTAAAACCGGTACTACAGATATT GGAAGCAATACTACAGTAAAAACAGGTGATTTAGTCACTTATGATAAAGAAAATGGCATG CACAAAAAAGTATTTTATAGTTTTATCGATGATAAAAATCACAATAAAAAACTGCTAGTT ATTAGAACGAAAGGTACCATTGCTGGTCAATATAGAGTTTATAGCGAAGAAGGTGCTAAC AAAAGTGGTTTAGCCTGGCCTTCAGCCTTTAAGGTACAGTTGCAACTACCTGATAATGAA GTAGCTCAAATATCTGATTACTATCCAAGAAATTCGATTGATACAAAAGAGTATATGAGT ACTTTAACTTATGGATTCAACGGTAATGTTACTGGTGATGATACAGGAAAAATTGGCGGC CTTATTGGTGCAAATGTTTCGATTGGTCATACACTGAAATATGTTCAACCTGATTTCAAA ACAATTTTAGAGAGCCCAACTGATAAAAAAGTAGGCTGGAAAGTGATATTTAACAATATG GTGAATCAAAATTGGGGACCATATGATAGAGATTCTTGGAACCCGGTATATGGCAATCAA CTTTTCATGAAAACTAGAAATGGTTCTATGAAAGCAGCAGAGAACTTCCTTGATCCTAAC AAAGCAAGTTCTCTATTATCTTCAGGGTTTTCACCAGACTTCGCTACAGTTATTACTATG GATAGAAAAGCATCCAAACAACAAACAAATATAGATGTAATATACGAACGAGTTCGTGAT GACTACCAATTGCATTGGACTTCAACAAATTGGAAAGGTACCAATACTAAAGATAAATGG ACAGATCGTTCTTCAGAAAGATATAAAATCGATTGGGAAAAAGAAGAAATGACAAATTAA >1_6 ATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAACAACATGATAGT GTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTTTACTAGGTAAA TTATTTGGATTCTAA >2_7 ATGACTGGACTAGCAGAAGCAATCGCAAATACTGTGCAAGCTGCACAACAACATGATAGT GTGAAATTAGGCACAAGTATCGTAGACATCGTTGCTAACGGTGTGGGTTTACTAGGTAAA TTATTTGGATTCTAA >3_5 TTGGGATATAAAAATATTTTGATAGACTTTGATGATACAATTGTTGATTTTTATGATGCA GAAGAATGGGCGTTTCACTATATGGCGAATGTTTTTAATCATAAAGCAACAAAGGATGAT TTTTTAACATTTAAAAAAATCAATCACCAACATTGGGAAGCTTTTCAACAAAATAAATTA ACGAAGTCTGAAGTATTATCAGAACGATTTGTGAATTACTTCAAACATCATCAAATGGAA GTTGATGGGCATCGTGCAGATGTGTTATTTAGAAATGGATTAGCAGAAGCTAAAGTTAAA TACTTTGATCAAACATTAGAAACAATTGTCGAATTATCGAAAAGACATGATTTATATATT GTTACTAATGGTGTAACCGAAACGCAAAAGAGAAGGTTAAATCAGACGCCGTTGCATAAA TATATTAAAAAGATATTTATATCTGAGGAAACAGGATATCAAAAACCTAATCCGGAATTT TTTAATTATGTTTTTAATGATATTGGTGAGGATGAAAGACAGCACTCGATTATAGTTGGA GATTCTTTAACATCTGACATTCTAGGTGGAATCAATGCGGGTATAGCTACTTGCTGGTTT AATTTTAGAGGATTTGATCATAATCCAGGAATTATACCTGATTATGAAATTAATTCATGG AAACAACTAAATGATATTGTACGTTAA Roary-3.8.0/t/data/split_pan_genome_sequences/hly.fa000066400000000000000000000036521304207556500225110ustar00rootroot00000000000000>2_1 ATGAAAACACGTATAGTCAGCTCAGTAACAACAACACTATTGCTAGGTTCCATATTAATG AATCCTGTCGCTAATGCCGCAGATTCTGATATTAATATTAAAACCGGTACTACAGATATT GGAAGCAATACTACAGTAAAAACAGGTGATTTAGTCACTTATGATAAAGAAAATGGCATG CACAAAAAAGTATTTTATAGTTTTATCGATGATAAAAATCACAATAAAAAACTGCTAGTT ATTAGAACGAAAGGTACCATTGCTGGTCAATATAGAGTTTATAGCGAAGAAGGTGCTAAC AAAAGTGGTTTAGCCTGGCCTTCAGCCTTTAAGGTACAGTTGCAACTACCTGATAATGAA GTAGCTCAAATATCTGATTACTATCCAAGAAATTCGATTGATACAAAAGAGTATATGAGT ACTTTAACTTATGGATTCAACGGTAATGTTACTGGTGATGATACAGGAAAAATTGGCGGC CTTATTGGTGCAAATGTTTCGATTGGTCATACACTGAAATATGTTCAACCTGATTTCAAA ACAATTTTAGAGAGCCCAACTGATAAAAAAGTAGGCTGGAAAGTGATATTTAACAATATG GTGAATCAAAATTGGGGACCATATGATAGAGATTCTTGGAACCCGGTATATGGCAATCAA CTTTTCATGAAAACTAGAAATGGTTCTATGAAAGCAGCAGAGAACTTCCTTGATCCTAAC AAAGCAAGTTCTCTATTATCTTCAGGGTTTTCACCAGACTTCGCTACAGTTATTACTATG GATAGAAAAGCATCCAAACAACAAACAAATATAGATGTAATATACGAACGAGTTCGTGAT GACTACCAATTGCATTGGACTTCAACAAATTGGAAAGGTACCAATACTAAAGATAAATGG ACAGATCGTTCTTCAGAAAGATATAAAATCGATTGGGAAAAAGAAGAAATGACAAATTAA >3_1 ATGAAAACACGTATAGTCAGCTCAGTAACAACAACACTATTGCTAGGTTCCATATTAATG AATCCTGTCGCTAATGCCGCAGATTCTGATATTAATATTAAAACCGGTACTACAGATATT GGAAGCAATACTACAGTAAAAACAGGTGATTTAGTCACTTATGATAAAGAAAATGGCATG CACAAAAAAGTATTTTATAGTTTTATCGATGATAAAAATCACAATAAAAAACTGCTAGTT ATTAGAACGAAAGGTACCATTGCTGGTCAATATAGAGTTTATAGCGAAGAAGGTGCTAAC AAAAGTGGTTTAGCCTGGCCTTCAGCCTTTAAGGTACAGTTGCAACTACCTGATAATGAA GTAGCTCAAATATCTGATTACTATCCAAGAAATTCGATTGATACAAAAGAGTATATGAGT ACTTTAACTTATGGATTCAACGGTAATGTTACTGGTGATGATACAGGAAAAATTGGCGGC CTTATTGGTGCAAATGTTTCGATTGGTCATACACTGAAATATGTTCAACCTGATTTCAAA ACAATTTTAGAGAGCCCAACTGATAAAAAAGTAGGCTGGAAAGTGATATTTAACAATATG GTGAATCAAAATTGGGGACCATATGATAGAGATTCTTGGAACCCGGTATATGGCAATCAA CTTTTCATGAAAACTAGAAATGGTTCTATGAAAGCAGCAGAGAACTTCCTTGATCCTAAC AAAGCAAGTTCTCTATTATCTTCAGGGTTTTCACCAGACTTCGCTACAGTTATTACTATG GATAGAAAAGCATCCAAACAACAAACAAATATAGATGTAATATACGAACGAGTTCGTGAT GACTACCAATTGCATTGGACTTCAACAAATTGGAAAGGTACCAATACTAAAGATAAATGG ACAGATCGTTCTTCAGAAAGATATAAAATCGATTGGGAAAAAGAAGAAATGACAAATTAA Roary-3.8.0/t/data/split_pan_genome_sequences/reannotated_groups_file000066400000000000000000000001141304207556500262200ustar00rootroot00000000000000different: 1_1 2_4 3_4 3_5 1_6 2_7 speH: 1_2 2_2 hly: 2_1 3_1 argF: 1_3 3_3 Roary-3.8.0/t/data/split_pan_genome_sequences/speH.fa000066400000000000000000000027201304207556500226070ustar00rootroot00000000000000>1_2 ATGAACAATAACATCACGAAAAAAATTATTTTATCAACAACATTGTTACTATTAGGTACA GCATTTACACAATTTCCTAATACACCTATCAATTCTTCATCTGAAGCGAAAGCTTATTAT ATAAATCAAAACGAAACTAACGTTAATGAGTTAACTAAATATTACTCGCAAAAATATTTA ACCTTCTCTAACAGTACGTTATGGCAAAAAGATAACGGTACGATTCATGCAACGTTGTTA CAGTTTTCTTGGTATAGTCATATTCAAGTTTATGGACCTGAAAGTTGGGGCAATATCAAC CAATTAAGAAATAAAAGCGTTGATATTTTTGGCATAAAAGACCAAGAAACCATTGATTCT TTTGCATTATCTCAAGAAACGTTTACTGGTGGTGTTACTCCTGCAGCAACATCTAACGAT AAACACTATAAACTGAATGTAACATATAAAGATAAAGCAGAAACGTTTACTGGCGGATTT CCAGTTTATGAAGGCAATAAGCCTGTTTTAACTTTAAAAGAATTAGATTTTCGTATTCGT CAAACATTAATTAAAAGTAAAAAATTATATAATAATTCTTATAATAAAGGACAAATTAAA ATAACAGGTACAGACAATAACTACACAATAGATTTAAGTAAAAGGTTGCCATCAACTGAT GCAAATAGATATGTTAAAAAACCTCAAAATGCAAAAATTGAAGTTATCCTCGAAAAATCA AACTAA >2_2 ATGAACAATAACATCACGAAAAAAATTATTTTATCAACAACATTGTTACTATTAGGTACA GCATTTACACAATTTCCTAATACACCTATCAATTCTTCATCTGAAGCGAAAGCTTATTAT ATAAATCAAAACGAAACTAACGTTAATGAGTTAACTAAATATTACTCGCAAAAATATTTA ACCTTCTCTAACAGTACGTTATGGCAAAAAGATAACGGTACGATTCATGCAACGTTGTTA CAGTTTTCTTGGTATAGTCATATTCAAGTTTATGGACCTGAAAGTTGGGGCAATATCAAC CAATTAAGAAATAAAAGCGTTGATATTTTTGGCATAAAAGACCAAGAAACCATTGATTCT TTTGCATTATCTCAAGAAACGTTTACTGGTGGTGTTACTCCTGCAGCAACATCTAACGAT AAACACTATAAACTGAATGTAACATATAAAGATAAAGCAGAAACGTTTACTGGCGGATTT CCAGTTTATGAAGGCAATAAGCCTGTTTTAACTTTAAAAGAATTAGATTTTCGTATTCGT CAAACATTAATTAAAAGTAAAAAATTATATAATAATTCTTATAATAAAGGACAAATTAAA ATAACAGGTACAGACAATAACTACACAATAGATTTAAGTAAAAGGTTGCCATCAACTGAT GCAAATAGATATGTTAAAAAACCTCAAAATGCAAAAATTGAAGTTATCCTCGAAAAATCA AACTAA Roary-3.8.0/t/data/uneven_sequences.fa000066400000000000000000000001201304207556500176550ustar00rootroot00000000000000>1 a >2 aa >3 aaa >4 aaaa >5 aaaaa >6 aaaaaa >7 aaaaaaa >8 aaaaaaaa >9 aaaaaaaaaRoary-3.8.0/t/data/uneven_sequences.fa.sorted.fa000066400000000000000000000001321304207556500215440ustar00rootroot00000000000000>1 aNN >2 aaN >3 aaa >4 aaaaNN >5 aaaaaN >6 aaaaaa >7 aaaaaaaNN >8 aaaaaaaaN >9 aaaaaaaaa Roary-3.8.0/t/data/variable_core/000077500000000000000000000000001304207556500165765ustar00rootroot00000000000000Roary-3.8.0/t/data/variable_core/gene_1.fa.aln000066400000000000000000000001171304207556500210140ustar00rootroot00000000000000>111_00001 AAAA >222_00001 AAAA >333_00001 AAAA >444_00001 AAAA >555_00001 AAAARoary-3.8.0/t/data/variable_core/gene_2.fa.aln000066400000000000000000000001131304207556500210110ustar00rootroot00000000000000>333_00002 CCCCCCC >444_00002 CCCCCCC >555_00002 CCCCCCC >222_00002 CCCCCCCRoary-3.8.0/t/data/variable_core/gene_3.fa.aln000066400000000000000000000000671304207556500210220ustar00rootroot00000000000000>111_00003 GG >333_00003 GG >222_00003 GG >444_00003 GGRoary-3.8.0/t/data/variable_core/gene_4.fa.aln000066400000000000000000000000411304207556500210130ustar00rootroot00000000000000>222_00004 TTTTT >444_00004 TTTTTRoary-3.8.0/t/data/variable_core/gene_5.fa.aln000066400000000000000000000001361304207556500210210ustar00rootroot00000000000000>555_00005 XXXXXXX >111_00005 XXXXXXX >222_00005 XXXXXXX >333_00005 XXXXXXX >444_00005 XXXXXXXRoary-3.8.0/t/dummy_blastp000077500000000000000000000000631304207556500155150ustar00rootroot00000000000000#!/usr/bin/env perl system("touch results.out"); 1;Roary-3.8.0/t/dummy_cd-hit000077500000000000000000000001561304207556500154030ustar00rootroot00000000000000#!/usr/bin/env perl system("touch output"); system("touch output.clstr"); system("touch output.bak.clstr"); 1;Roary-3.8.0/t/dummy_makeblastdb000077500000000000000000000002021304207556500164740ustar00rootroot00000000000000#!/usr/bin/env perl system("touch output_contigs.phr"); system("touch output_contigs.pin"); system("touch output_contigs.psq"); 1;Roary-3.8.0/t/lib/000077500000000000000000000000001304207556500136365ustar00rootroot00000000000000Roary-3.8.0/t/lib/TestHelper.pm000066400000000000000000000274211304207556500162610ustar00rootroot00000000000000package TestHelper; use Moose::Role; use Test::Most; use Data::Dumper; use File::Slurper qw(read_lines read_text); use Test::Files; use Test::Output; $ENV{PATH} .= ":./bin"; sub compare_files { my ( $actual_file, $expected_file, $comment ) = @_; my @actual_lines = sort( read_lines($actual_file) ); my @expected_lines = sort( read_lines($expected_file) ); is_deeply( \@actual_lines, \@expected_lines, $comment ); } sub compare_groups_files { my ( $actual_file, $expected_file, $comment ) = @_; my @actual_lines = sort( read_lines($actual_file) ); my @expected_lines = sort( read_lines($expected_file) ); my @actual_sorted_lines; for my $line (@actual_lines) { my @line_details = split( / /, $line ); shift @line_details; my @sorted = sort(@line_details); push( @actual_sorted_lines, \@sorted ); } my @expected_sorted_lines; for my $line (@expected_lines) { my @line_details = split( / /, $line ); shift @line_details; my @sorted = sort(@line_details); push( @expected_sorted_lines, \@sorted ); } is_deeply( \@actual_sorted_lines, \@expected_sorted_lines, $comment ); } sub stdout_should_have { my ( $script_name, $parameters, $expected ) = @_; my @input_args = split( " ", $parameters ); open OLDERR, '>&STDERR'; eval("use $script_name ;"); my $returned_values = 0; { local *STDERR; open STDERR, '>/dev/null' or warn "Can't open /dev/null: $!"; stdout_like { eval("$script_name->new(args => \\\@input_args, script_name => '$script_name')->run;"); } qr/$expected/, "got expected text $expected for $parameters"; close STDERR; } open STDERR, '>&OLDERR' or die "Can't restore stderr: $!"; close OLDERR or die "Can't close OLDERR: $!"; } sub stdout_should_not_have { my ( $script_name, $parameters, $expected ) = @_; my @input_args = split( " ", $parameters ); open OLDERR, '>&STDERR'; eval("use $script_name ;"); my $returned_values = 0; { local *STDERR; open STDERR, '>/dev/null' or warn "Can't open /dev/null: $!"; stdout_unlike { eval("$script_name->new(args => \\\@input_args, script_name => '$script_name')->run;"); } qr/$expected/, "got expected text $expected for $parameters"; close STDERR; } open STDERR, '>&OLDERR' or die "Can't restore stderr: $!"; close OLDERR or die "Can't close OLDERR: $!"; } sub stderr_should_not_have { my ( $script_name, $parameters, $expected ) = @_; my @input_args = split( " ", $parameters ); open OLDOUT, '>&STDOUT'; eval("use $script_name ;"); my $returned_values = 0; { local *STDOUT; open STDOUT, '>/dev/null' or warn "Can't open /dev/null: $!"; stderr_unlike { eval("$script_name->new(args => \\\@input_args, script_name => '$script_name')->run;"); } qr/$expected/, "got expected text $expected for $parameters"; close STDOUT; } open STDOUT, '>&OLDOUT' or die "Can't restore stdout: $!"; close OLDOUT or die "Can't close OLDOUT: $!"; } sub stderr_should_have { my ( $script_name, $parameters, $expected ) = @_; my @input_args = split( " ", $parameters ); open OLDOUT, '>&STDOUT'; eval("use $script_name ;"); my $returned_values = 0; { local *STDOUT; open STDOUT, '>/dev/null' or warn "Can't open /dev/null: $!"; stderr_like { eval("$script_name->new(args => \\\@input_args, script_name => '$script_name')->run;"); } qr/$expected/, "got expected text $expected for $parameters"; close STDOUT; } open STDOUT, '>&OLDOUT' or die "Can't restore stdout: $!"; close OLDOUT or die "Can't close OLDOUT: $!"; } sub mock_execute_script_and_check_output { my ( $script_name, $scripts_and_expected_files, $columns_to_exclude ) = @_; system('touch empty_file'); open OLDOUT, '>&STDOUT'; open OLDERR, '>&STDERR'; eval("use $script_name ;"); my $returned_values = 0; { local *STDOUT; open STDOUT, '>/dev/null' or warn "Can't open /dev/null: $!"; local *STDERR; open STDERR, '>/dev/null' or warn "Can't open /dev/null: $!"; for my $script_parameters ( sort keys %$scripts_and_expected_files ) { my $full_script = $script_parameters; my @input_args = split( " ", $full_script ); my $cmd = "$script_name->new(args => \\\@input_args, script_name => '$script_name')->run;"; eval($cmd); warn $@ if $@; my $actual_output_file_name = $scripts_and_expected_files->{$script_parameters}->[0]; my $expected_output_file_name = $scripts_and_expected_files->{$script_parameters}->[1]; ok( -e $actual_output_file_name, "Actual output file exists $actual_output_file_name $script_parameters" ); if ( defined($columns_to_exclude) ) { is( _exclude_variable_columns_from_spreadsheet( $actual_output_file_name, $columns_to_exclude ), _exclude_variable_columns_from_spreadsheet( $expected_output_file_name, $columns_to_exclude ), 'Actual and expected match output excluding variable columns' ); } else { compare_ok( $actual_output_file_name, $expected_output_file_name, "Actual and expected output match for '$script_parameters'" ); } unlink($actual_output_file_name); } close STDOUT; close STDERR; } # Restore stdout. open STDOUT, '>&OLDOUT' or die "Can't restore stdout: $!"; open STDERR, '>&OLDERR' or die "Can't restore stderr: $!"; # Avoid leaks by closing the independent copies. close OLDOUT or die "Can't close OLDOUT: $!"; close OLDERR or die "Can't close OLDERR: $!"; unlink('empty_file'); } sub mock_execute_script_and_check_output_sorted_groups { my ( $script_name, $scripts_and_expected_files, $columns_to_exclude ) = @_; system('touch empty_file'); open OLDOUT, '>&STDOUT'; open OLDERR, '>&STDERR'; eval("use $script_name ;"); my $returned_values = 0; { local *STDOUT; open STDOUT, '>/dev/null' or warn "Can't open /dev/null: $!"; local *STDERR; open STDERR, '>/dev/null' or warn "Can't open /dev/null: $!"; for my $script_parameters ( sort keys %$scripts_and_expected_files ) { my $full_script = $script_parameters; my @input_args = split( " ", $full_script ); my $cmd = "$script_name->new(args => \\\@input_args, script_name => '$script_name')->run;"; eval($cmd); warn $@ if $@; my $actual_output_file_name = $scripts_and_expected_files->{$script_parameters}->[0]; my $expected_output_file_name = $scripts_and_expected_files->{$script_parameters}->[1]; ok( -e $actual_output_file_name, "Actual output file exists $actual_output_file_name $script_parameters" ); if ( defined($columns_to_exclude) ) { my @actual_content_sorted = sort( split( /\n/, _exclude_variable_columns_from_spreadsheet( $actual_output_file_name, $columns_to_exclude ) ) ); my @expected_content_sorted = sort( split( /\n/, _exclude_variable_columns_from_spreadsheet( $expected_output_file_name, $columns_to_exclude ) ) ); is_deeply( \@actual_content_sorted, \@expected_content_sorted, 'Actual and expected match output excluding variable columns' ); } else { compare_groups_files( $actual_output_file_name, $expected_output_file_name, "Actual and expected sorted output match for '$script_parameters'" ); } unlink($actual_output_file_name); } close STDOUT; close STDERR; } # Restore stdout. open STDOUT, '>&OLDOUT' or die "Can't restore stdout: $!"; open STDERR, '>&OLDERR' or die "Can't restore stderr: $!"; # Avoid leaks by closing the independent copies. close OLDOUT or die "Can't close OLDOUT: $!"; close OLDERR or die "Can't close OLDERR: $!"; unlink('empty_file'); } sub mock_execute_script_and_check_output_sorted { my ( $script_name, $scripts_and_expected_files, $columns_to_exclude ) = @_; system('touch empty_file'); open OLDOUT, '>&STDOUT'; open OLDERR, '>&STDERR'; eval("use $script_name ;"); my $returned_values = 0; { local *STDOUT; open STDOUT, '>/dev/null' or warn "Can't open /dev/null: $!"; local *STDERR; open STDERR, '>/dev/null' or warn "Can't open /dev/null: $!"; for my $script_parameters ( sort keys %$scripts_and_expected_files ) { my $full_script = $script_parameters; my @input_args = split( " ", $full_script ); my $cmd = "$script_name->new(args => \\\@input_args, script_name => '$script_name')->run;"; eval($cmd); warn $@ if $@; my $actual_output_file_name = $scripts_and_expected_files->{$script_parameters}->[0]; my $expected_output_file_name = $scripts_and_expected_files->{$script_parameters}->[1]; ok( -e $actual_output_file_name, "Actual output file exists $actual_output_file_name $script_parameters" ); if ( defined($columns_to_exclude) ) { my @actual_content_sorted = sort( split( /\n/, _exclude_variable_columns_from_spreadsheet( $actual_output_file_name, $columns_to_exclude ) ) ); my @expected_content_sorted = sort( split( /\n/, _exclude_variable_columns_from_spreadsheet( $expected_output_file_name, $columns_to_exclude ) ) ); is_deeply( \@actual_content_sorted, \@expected_content_sorted, 'Actual and expected match output excluding variable columns' ); } else { compare_groups_files( $actual_output_file_name, $expected_output_file_name, "Actual and expected sorted output match for '$script_parameters'" ); } unlink($actual_output_file_name); } close STDOUT; close STDERR; } # Restore stdout. open STDOUT, '>&OLDOUT' or die "Can't restore stdout: $!"; open STDERR, '>&OLDERR' or die "Can't restore stderr: $!"; # Avoid leaks by closing the independent copies. close OLDOUT or die "Can't close OLDOUT: $!"; close OLDERR or die "Can't close OLDERR: $!"; unlink('empty_file'); } sub compare_tab_files_with_variable_coordinates { my ( $actual_file, $expected_file ) = @_; ok( -e $actual_file, 'File exists' . $actual_file ); is( _filter_coordinates_from_string($actual_file), _filter_coordinates_from_string($expected_file), 'file contents the same for ' . $actual_file ); } sub _filter_coordinates_from_string { my ($file_name) = @_; my $file_contents = read_text($file_name); my @lines = split( /\n/, $file_contents ); my $modified_file_contents = ''; for my $line ( sort @lines ) { next if ( $line =~ /(variation|misc_feature|feature)/ ); $line =~ s!group_[\d]+!group_XX!gi; $modified_file_contents .= $line . "\n"; } return $modified_file_contents; } sub _exclude_variable_columns_from_spreadsheet { my ( $file_name, $columns_to_exclude ) = @_; my $file_contents = read_text($file_name); my @lines = split( /\n/, $file_contents ); my $modified_file_contents = ''; for ( my $i = 0 ; $i < @lines ; $i++ ) { my @cells = split( /,/, $lines[$i] ); for my $col_number ( @{$columns_to_exclude} ) { next unless ( defined( $cells[$col_number] ) ); $cells[$col_number] = ''; } $modified_file_contents .= join( ',', @cells ) . "\n"; } return $modified_file_contents; } no Moose; 1;