pybedtools.contrib.venn_makerΒΆ
Interface between pybedtools and the R package VennDiagram.
Rather than depend on the user to have rpy2 installed, this simply writes an R script that can be edited and tweaked by the user before being run in R.
Functions
cleaned_intersect (items) |
Perform interval intersections such that the end products have identical features for overlapping intervals. |
truncator (feature) |
Convert a feature of any format into a BED3 format. |
venn_maker (beds[, names, figure_filename, ...]) |
Given a list of interval files, write an R script to create a Venn diagram of overlaps (and optionally run it). |
Classes
OrderedDict |
Dictionary that remembers insertion order |