epigrass-2.4.7/ 0000755 0000000 0000000 00000000000 13006165774 013310 5 ustar root root 0000000 0000000 epigrass-2.4.7/Epigrass/ 0000755 0000000 0000000 00000000000 13006165774 015065 5 ustar root root 0000000 0000000 epigrass-2.4.7/Epigrass/HelpEpg.html 0000664 0000000 0000000 00000026572 12720633740 017310 0 ustar root root 0000000 0000000
EPIGRASS -.epg file Definition
The .epg file defines the epidemic model and the parameters to be used by EPIGRASS.
It can be edited by the user directly, by means of a text editor, or using the .epg editor.
Basic structure of a .epg file:
The .epg is divided into seven sections:
THE WORLD
EPIDEMIOLOGICAL MODEL
MODEL PARAMETERS
INITIAL CONDITIONS
EPIDEMIC EVENTS
TRANSPORTATION MODEL
SIMULATION AND OUTPUT
WARNING: Sections cannot be removed or created.
NOTE: No variable can be removed, even if not used by your model. If a variable is not used by your model, just leave it there that will do no harm.
THE WORLD
shapefile -> is the map layer that will be used as a background for the graph display. It is defined as a list, containing a file name and the name of two variables: the first is the locality names, and the other is a sequence of unique integers to be used as geocodes. If no shapefile is available, leave this variable empty.
sites -> text file with list of sites (see Documentation).
edges -> text file with list of edges (see Documentation). Example:edges.csv
encoding -> encoding variable can be set to a string stating the encoding of your sites and edges files. If left empty iso-8859-1 (latin-1) is assumed (see Documentation for acceptable encoding strings).
EPIDEMIOLOGICAL MODEL
SIS, SIS_s ,SIR, SIR_s, SEIS, SEIS_s, SEIR, SEIR_s,SIpRpS, SIpRpS_s,SIpR,SIpR_s,Influenza ). Besides these, the user may define his/her own model and access by the protect word Custom .
The epidemic model is defined by the variable:
modtype -> Here, the epidemic model is defined.
MODEL PARAMETERS
sites file.
In this section, there is a set of variables that cannot be removed from the .epg file (if your model does not require them, just ignore them). These are:
beta -> transmission coefficient (contact rate * transmissibility).
alpha -> clumping parameter. Control for departures form random mixing.
e -> inverse of incubation period.
r -> inverse of infectious period
delta -> probability of acquiring full immunity after infection [0,1]. Only useful for models with partial immunity.
w -> rate of of immunity wane per time step [0,1]. In other words, it is the inverse of the average duration of immunity. This variable is only useful in models with immunity wane
B -> susceptible renewal rate, per time step.
p -> level of suscpetibility of individuals in the recovered class [0,1]. This variable is useful in models where individuals in the recovered class are not fully protected against infection.
Besides these required parameters, the user may add any number of extra parameters to the epg file. To do this, just click the button NEW VARIABLE and choose section MODEL PARAMETERS. A new line will be added to the editor, allowing you to set the value for this variable and add comments.
INITIAL CONDITIONS
The protected letter N is the population size of each site. It can be used when defining the population in each state. See examples.
Note that the rule defined here will be applied equally to all sites. For site-specific definitions, go to section EVENTS (below).
Here, there are three mandatory parameters: (they cannot be removed from the file. If the variable is not present in the your model, it will be ignored).
S -> number (or density or relative frequency) of susceptibles
E -> number (or density or relative frequency) of exposed individuals (infected but not infectious
I -> number (or density or relative frequency) of infectious individuals
Examples:
Besides these mandatory variables, the user may add as many new variables as his/her model requires. To do this, just click on the ADD VARIABLE button and choose a name for this variable (careful not to duplicate names). Then, a new line will be created in the .epg editor. Add the parameter value and comments.
EPIDEMIC EVENTS
Seed -> Inserts infected individuals (type I) in a set of sites at start time. This command is useful if ones want to specify the location where the index case(s) are.
Format: [('locality1's geocode',epid state, n),('locality2's geocode', epid state, n),...], where n is the number of infected individuals in the corresponding locality, at time 0.
Examples:
Vaccinate -> At a set of time steps, remove a fraction of individuals cov from the suscpetible class to the recovered class at given localities.
Format: [('locality1's geocode', [t1,t2,...], [cov1,cov2,...]),('locality2's geocode', [t1,t2,...], [cov1,cov2,...])]
Examples:
Quarantine -> not implemented yet
TRANSPORTATION MODEL
doTransp -> Boolean variable. If set to 0, no transport occurs. If set to 1, the commutation dynamics is simulated (useful for debugging purposes)
stochastic -> Boolean variable. If set to 1, commutation is modeled as a stochastic process (Poisson distributed). If set to 0, commutation is modeled deterministically (see Documentation for details)
speed -> Average speed of transportation system in km per time step. Enter 0 for instantaneous travel. Distance unit must be the same specified in edges files
SIMULATION AND OUTPUT
steps -> number of time steps. Example: steps = 50
outdir -> Output directory. Must be a full path. If empty the output will be generated on the sub-directory of same path as the model script.
DBout -> Database Output. Set to 0 (no database output) or 1
report -> controls report generation. The variable report can take the following values: 0 - No report is generated; 1 - A network analysis report is generated in PDF Format; 2 - An epidemiological report is generated in PDF Format; 4 - A full report is generated in PDF Format.
siteRep -> is a list with site codes. For each site in this list, a detailed report is appended to the main report defined above. Example: [34,54,23]
Replicas -> if set to an integer larger than zero, the model will be run n times and the results will be consolidated before storing. Replicate mode automatically turn off report and batch options.
RandSeed -> if RandSeed is set to 1 the seed will be randomized on each replicate
Batch -> Batch Run list other scripts to be run in after this one. Don't forget the extension .epg. Model scripts must be in the same directory as this file or provide full path.
epigrass-2.4.7/Epigrass/Ui_about4.py 0000664 0000000 0000000 00000067543 12772733376 017323 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/flavio/Documents/Projetos/Epigrass/Epigrass-devel-qt4/about4.ui'
#
# Created: Wed Jul 9 13:09:13 2008
# by: PyQt4 UI code generator 4.3.3
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
class Ui_aboutDialog(object):
def setupUi(self, aboutDialog):
aboutDialog.setObjectName("aboutDialog")
aboutDialog.resize(QtCore.QSize(QtCore.QRect(0,0,528,368).size()).expandedTo(aboutDialog.minimumSizeHint()))
aboutDialog.setSizeGripEnabled(True)
aboutDialog.setModal(True)
self.vboxlayout = QtGui.QVBoxLayout(aboutDialog)
self.vboxlayout.setSpacing(6)
self.vboxlayout.setMargin(6)
self.vboxlayout.setObjectName("vboxlayout")
self.tabWidget = QtGui.QTabWidget(aboutDialog)
self.tabWidget.setObjectName("tabWidget")
self.Widget9 = QtGui.QWidget()
self.Widget9.setGeometry(QtCore.QRect(0,0,504,270))
self.Widget9.setObjectName("Widget9")
self.pixmapLabel1 = QtGui.QLabel(self.Widget9)
self.pixmapLabel1.setGeometry(QtCore.QRect(312,24,50,40))
self.pixmapLabel1.setScaledContents(True)
self.pixmapLabel1.setWordWrap(False)
self.pixmapLabel1.setObjectName("pixmapLabel1")
self.textLabel1 = QtGui.QLabel(self.Widget9)
self.textLabel1.setGeometry(QtCore.QRect(300,10,171,160))
self.textLabel1.setWordWrap(False)
self.textLabel1.setObjectName("textLabel1")
self.aboutBrowser = QtGui.QTextBrowser(self.Widget9)
self.aboutBrowser.setGeometry(QtCore.QRect(10,10,271,260))
self.aboutBrowser.setObjectName("aboutBrowser")
self.tabWidget.addTab(self.Widget9,"")
self.Widget8 = QtGui.QWidget()
self.Widget8.setGeometry(QtCore.QRect(0,0,504,270))
self.Widget8.setObjectName("Widget8")
self.authorsBrowser = QtGui.QTextBrowser(self.Widget8)
self.authorsBrowser.setGeometry(QtCore.QRect(10,10,481,261))
self.authorsBrowser.setObjectName("authorsBrowser")
self.tabWidget.addTab(self.Widget8,"")
self.TabPage = QtGui.QWidget()
self.TabPage.setGeometry(QtCore.QRect(0,0,504,270))
self.TabPage.setObjectName("TabPage")
self.ackBrowser = QtGui.QTextBrowser(self.TabPage)
self.ackBrowser.setGeometry(QtCore.QRect(12,14,490,260))
self.ackBrowser.setObjectName("ackBrowser")
self.tabWidget.addTab(self.TabPage,"")
self.TabPage1 = QtGui.QWidget()
self.TabPage1.setGeometry(QtCore.QRect(0,0,504,270))
self.TabPage1.setObjectName("TabPage1")
self.licenseBrowser = QtGui.QTextBrowser(self.TabPage1)
self.licenseBrowser.setGeometry(QtCore.QRect(10,10,491,261))
self.licenseBrowser.setObjectName("licenseBrowser")
self.tabWidget.addTab(self.TabPage1,"")
self.vboxlayout.addWidget(self.tabWidget)
self.hboxlayout = QtGui.QHBoxLayout()
self.hboxlayout.setSpacing(6)
self.hboxlayout.setMargin(0)
self.hboxlayout.setObjectName("hboxlayout")
spacerItem = QtGui.QSpacerItem(20,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
self.hboxlayout.addItem(spacerItem)
self.buttonCancel = QtGui.QPushButton(aboutDialog)
self.buttonCancel.setAutoDefault(True)
self.buttonCancel.setObjectName("buttonCancel")
self.hboxlayout.addWidget(self.buttonCancel)
self.vboxlayout.addLayout(self.hboxlayout)
self.retranslateUi(aboutDialog)
self.tabWidget.setCurrentIndex(0)
QtCore.QObject.connect(self.buttonCancel,QtCore.SIGNAL("clicked()"),aboutDialog.reject)
QtCore.QMetaObject.connectSlotsByName(aboutDialog)
def retranslateUi(self, aboutDialog):
aboutDialog.setWindowTitle(QtGui.QApplication.translate("aboutDialog", "About Epigrass", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1.setText(QtGui.QApplication.translate("aboutDialog", "Epigrass :
\n"
"EPI demiological
\n"
"G eo-R eferenced
\n"
"A nalysis and
\n"
"S imulation
\n"
"S ystem
", None, QtGui.QApplication.UnicodeUTF8))
self.aboutBrowser.setHtml(QtGui.QApplication.translate("aboutDialog", "\n"
"This is Epigrass version 2.0a1 website
", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.Widget9), QtGui.QApplication.translate("aboutDialog", "About", None, QtGui.QApplication.UnicodeUTF8))
self.authorsBrowser.setHtml(QtGui.QApplication.translate("aboutDialog", "\n"
"Developers:
\n"
"Flávio Codeço Coelho
", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.Widget8), QtGui.QApplication.translate("aboutDialog", "Authors", None, QtGui.QApplication.UnicodeUTF8))
self.ackBrowser.setHtml(QtGui.QApplication.translate("aboutDialog", "\n"
"Translations:
\n"
"French:
\n"
"Yann Chemin
\n"
"
\n"
"Spanish:
\n"
"Naco Serrano
", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.TabPage), QtGui.QApplication.translate("aboutDialog", "Acknowledgements", None, QtGui.QApplication.UnicodeUTF8))
self.licenseBrowser.setToolTip(QtGui.QApplication.translate("aboutDialog", "To use Epigrass you have to agree with this license", None, QtGui.QApplication.UnicodeUTF8))
self.licenseBrowser.setHtml(QtGui.QApplication.translate("aboutDialog", "\n"
"GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation\'s software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author\'s protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors\' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone\'s free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The \"Program\", below, refers to any such program or work, and a \"work based on the Program\" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term \"modification\".) Each licensee is addressed as \"you\". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program\'s source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. 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If the Program specifies a version number of this License which applies to it and \"any later version\", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM \"AS IS\" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the \"copyright\" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w\'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c\' for details. The hypothetical commands `show w\' and `show c\' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w\' and `show c\'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a \"copyright disclaimer\" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision\' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License.
", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.TabPage1), QtGui.QApplication.translate("aboutDialog", "License", None, QtGui.QApplication.UnicodeUTF8))
self.buttonCancel.setText(QtGui.QApplication.translate("aboutDialog", "&Close", None, QtGui.QApplication.UnicodeUTF8))
self.buttonCancel.setShortcut(QtGui.QApplication.translate("aboutDialog", "Alt+C", None, QtGui.QApplication.UnicodeUTF8))
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
aboutDialog = QtGui.QDialog()
ui = Ui_aboutDialog()
ui.setupUi(aboutDialog)
aboutDialog.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/Ui_about4.py.bak 0000664 0000000 0000000 00000067543 12720633740 020042 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/flavio/Documents/Projetos/Epigrass/Epigrass-devel-qt4/about4.ui'
#
# Created: Wed Jul 9 13:09:13 2008
# by: PyQt4 UI code generator 4.3.3
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
class Ui_aboutDialog(object):
def setupUi(self, aboutDialog):
aboutDialog.setObjectName("aboutDialog")
aboutDialog.resize(QtCore.QSize(QtCore.QRect(0,0,528,368).size()).expandedTo(aboutDialog.minimumSizeHint()))
aboutDialog.setSizeGripEnabled(True)
aboutDialog.setModal(True)
self.vboxlayout = QtGui.QVBoxLayout(aboutDialog)
self.vboxlayout.setSpacing(6)
self.vboxlayout.setMargin(6)
self.vboxlayout.setObjectName("vboxlayout")
self.tabWidget = QtGui.QTabWidget(aboutDialog)
self.tabWidget.setObjectName("tabWidget")
self.Widget9 = QtGui.QWidget()
self.Widget9.setGeometry(QtCore.QRect(0,0,504,270))
self.Widget9.setObjectName("Widget9")
self.pixmapLabel1 = QtGui.QLabel(self.Widget9)
self.pixmapLabel1.setGeometry(QtCore.QRect(312,24,50,40))
self.pixmapLabel1.setScaledContents(True)
self.pixmapLabel1.setWordWrap(False)
self.pixmapLabel1.setObjectName("pixmapLabel1")
self.textLabel1 = QtGui.QLabel(self.Widget9)
self.textLabel1.setGeometry(QtCore.QRect(300,10,171,160))
self.textLabel1.setWordWrap(False)
self.textLabel1.setObjectName("textLabel1")
self.aboutBrowser = QtGui.QTextBrowser(self.Widget9)
self.aboutBrowser.setGeometry(QtCore.QRect(10,10,271,260))
self.aboutBrowser.setObjectName("aboutBrowser")
self.tabWidget.addTab(self.Widget9,"")
self.Widget8 = QtGui.QWidget()
self.Widget8.setGeometry(QtCore.QRect(0,0,504,270))
self.Widget8.setObjectName("Widget8")
self.authorsBrowser = QtGui.QTextBrowser(self.Widget8)
self.authorsBrowser.setGeometry(QtCore.QRect(10,10,481,261))
self.authorsBrowser.setObjectName("authorsBrowser")
self.tabWidget.addTab(self.Widget8,"")
self.TabPage = QtGui.QWidget()
self.TabPage.setGeometry(QtCore.QRect(0,0,504,270))
self.TabPage.setObjectName("TabPage")
self.ackBrowser = QtGui.QTextBrowser(self.TabPage)
self.ackBrowser.setGeometry(QtCore.QRect(12,14,490,260))
self.ackBrowser.setObjectName("ackBrowser")
self.tabWidget.addTab(self.TabPage,"")
self.TabPage1 = QtGui.QWidget()
self.TabPage1.setGeometry(QtCore.QRect(0,0,504,270))
self.TabPage1.setObjectName("TabPage1")
self.licenseBrowser = QtGui.QTextBrowser(self.TabPage1)
self.licenseBrowser.setGeometry(QtCore.QRect(10,10,491,261))
self.licenseBrowser.setObjectName("licenseBrowser")
self.tabWidget.addTab(self.TabPage1,"")
self.vboxlayout.addWidget(self.tabWidget)
self.hboxlayout = QtGui.QHBoxLayout()
self.hboxlayout.setSpacing(6)
self.hboxlayout.setMargin(0)
self.hboxlayout.setObjectName("hboxlayout")
spacerItem = QtGui.QSpacerItem(20,20,QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Minimum)
self.hboxlayout.addItem(spacerItem)
self.buttonCancel = QtGui.QPushButton(aboutDialog)
self.buttonCancel.setAutoDefault(True)
self.buttonCancel.setObjectName("buttonCancel")
self.hboxlayout.addWidget(self.buttonCancel)
self.vboxlayout.addLayout(self.hboxlayout)
self.retranslateUi(aboutDialog)
self.tabWidget.setCurrentIndex(0)
QtCore.QObject.connect(self.buttonCancel,QtCore.SIGNAL("clicked()"),aboutDialog.reject)
QtCore.QMetaObject.connectSlotsByName(aboutDialog)
def retranslateUi(self, aboutDialog):
aboutDialog.setWindowTitle(QtGui.QApplication.translate("aboutDialog", "About Epigrass", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1.setText(QtGui.QApplication.translate("aboutDialog", "Epigrass :
\n"
"EPI demiological
\n"
"G eo-R eferenced
\n"
"A nalysis and
\n"
"S imulation
\n"
"S ystem
", None, QtGui.QApplication.UnicodeUTF8))
self.aboutBrowser.setHtml(QtGui.QApplication.translate("aboutDialog", "\n"
"This is Epigrass version 2.0a1 website
", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.Widget9), QtGui.QApplication.translate("aboutDialog", "About", None, QtGui.QApplication.UnicodeUTF8))
self.authorsBrowser.setHtml(QtGui.QApplication.translate("aboutDialog", "\n"
"Developers:
\n"
"Flávio Codeço Coelho
", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.Widget8), QtGui.QApplication.translate("aboutDialog", "Authors", None, QtGui.QApplication.UnicodeUTF8))
self.ackBrowser.setHtml(QtGui.QApplication.translate("aboutDialog", "\n"
"Translations:
\n"
"French:
\n"
"Yann Chemin
\n"
"
\n"
"Spanish:
\n"
"Naco Serrano
", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.TabPage), QtGui.QApplication.translate("aboutDialog", "Acknowledgements", None, QtGui.QApplication.UnicodeUTF8))
self.licenseBrowser.setToolTip(QtGui.QApplication.translate("aboutDialog", "To use Epigrass you have to agree with this license", None, QtGui.QApplication.UnicodeUTF8))
self.licenseBrowser.setHtml(QtGui.QApplication.translate("aboutDialog", "\n"
"GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation\'s software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author\'s protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors\' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone\'s free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The \"Program\", below, refers to any such program or work, and a \"work based on the Program\" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term \"modification\".) Each licensee is addressed as \"you\". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program\'s source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients\' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and \"any later version\", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM \"AS IS\" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the \"copyright\" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w\'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c\' for details. The hypothetical commands `show w\' and `show c\' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w\' and `show c\'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a \"copyright disclaimer\" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision\' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License.
", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.TabPage1), QtGui.QApplication.translate("aboutDialog", "License", None, QtGui.QApplication.UnicodeUTF8))
self.buttonCancel.setText(QtGui.QApplication.translate("aboutDialog", "&Close", None, QtGui.QApplication.UnicodeUTF8))
self.buttonCancel.setShortcut(QtGui.QApplication.translate("aboutDialog", "Alt+C", None, QtGui.QApplication.UnicodeUTF8))
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
aboutDialog = QtGui.QDialog()
ui = Ui_aboutDialog()
ui.setupUi(aboutDialog)
aboutDialog.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/Ui_cpanel4new.py 0000664 0000000 0000000 00000100524 12772733376 020150 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/fccoelho/Documents/Projects_software/epigrass/epigrassqt4/cpanel4new.ui'
#
# Created: Tue Aug 11 14:10:16 2009
# by: PyQt4 UI code generator 4.4.4
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
class Ui_MainWindow(object):
def setupUi(self, MainWindow):
MainWindow.setObjectName("MainWindow")
MainWindow.resize(807, 479)
MainWindow.setMaximumSize(QtCore.QSize(16777215, 479))
self.centralwidget = QtGui.QWidget(MainWindow)
self.centralwidget.setObjectName("centralwidget")
self.verticalLayout_2 = QtGui.QVBoxLayout(self.centralwidget)
self.verticalLayout_2.setObjectName("verticalLayout_2")
self.tabWidget = QtGui.QTabWidget(self.centralwidget)
self.tabWidget.setEnabled(True)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.MinimumExpanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.tabWidget.sizePolicy().hasHeightForWidth())
self.tabWidget.setSizePolicy(sizePolicy)
self.tabWidget.setMaximumSize(QtCore.QSize(16777215, 16777215))
self.tabWidget.setObjectName("tabWidget")
self.Widget8 = QtGui.QWidget()
self.Widget8.setObjectName("Widget8")
self.verticalLayout = QtGui.QVBoxLayout(self.Widget8)
self.verticalLayout.setObjectName("verticalLayout")
self.splitter6 = QtGui.QSplitter(self.Widget8)
self.splitter6.setOrientation(QtCore.Qt.Vertical)
self.splitter6.setObjectName("splitter6")
self.modSpec = QtGui.QGroupBox(self.splitter6)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.MinimumExpanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.modSpec.sizePolicy().hasHeightForWidth())
self.modSpec.setSizePolicy(sizePolicy)
self.modSpec.setMinimumSize(QtCore.QSize(518, 80))
self.modSpec.setObjectName("modSpec")
self.gridLayout = QtGui.QGridLayout(self.modSpec)
self.gridLayout.setObjectName("gridLayout")
self._2 = QtGui.QGridLayout()
self._2.setObjectName("_2")
self.chooseButton = QtGui.QPushButton(self.modSpec)
self.chooseButton.setObjectName("chooseButton")
self._2.addWidget(self.chooseButton, 1, 2, 1, 1)
self.textLabel1 = QtGui.QLabel(self.modSpec)
self.textLabel1.setWordWrap(False)
self.textLabel1.setObjectName("textLabel1")
self._2.addWidget(self.textLabel1, 0, 0, 1, 1)
spacerItem = QtGui.QSpacerItem(370, 20, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Minimum)
self._2.addItem(spacerItem, 0, 1, 1, 3)
self.scriptNameEdit = QtGui.QLineEdit(self.modSpec)
self.scriptNameEdit.setObjectName("scriptNameEdit")
self._2.addWidget(self.scriptNameEdit, 1, 0, 1, 2)
self.editButton = QtGui.QPushButton(self.modSpec)
self.editButton.setObjectName("editButton")
self._2.addWidget(self.editButton, 1, 3, 1, 1)
self.gridLayout.addLayout(self._2, 0, 0, 1, 1)
self.Database_layout = QtGui.QWidget(self.splitter6)
self.Database_layout.setObjectName("Database_layout")
self._3 = QtGui.QGridLayout(self.Database_layout)
self._3.setObjectName("_3")
spacerItem1 = QtGui.QSpacerItem(20, 100, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self._3.addItem(spacerItem1, 1, 0, 1, 1)
self.dbSpecGroupBox = QtGui.QGroupBox(self.Database_layout)
self.dbSpecGroupBox.setEnabled(False)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.MinimumExpanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.dbSpecGroupBox.sizePolicy().hasHeightForWidth())
self.dbSpecGroupBox.setSizePolicy(sizePolicy)
self.dbSpecGroupBox.setObjectName("dbSpecGroupBox")
self.layout7_2 = QtGui.QWidget(self.dbSpecGroupBox)
self.layout7_2.setGeometry(QtCore.QRect(10, 20, 360, 140))
self.layout7_2.setObjectName("layout7_2")
self._4 = QtGui.QGridLayout(self.layout7_2)
self._4.setObjectName("_4")
self.textLabel2 = QtGui.QLabel(self.layout7_2)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel2.sizePolicy().hasHeightForWidth())
self.textLabel2.setSizePolicy(sizePolicy)
self.textLabel2.setWordWrap(False)
self.textLabel2.setObjectName("textLabel2")
self._4.addWidget(self.textLabel2, 0, 0, 1, 1)
self.portEdit = QtGui.QLineEdit(self.layout7_2)
self.portEdit.setObjectName("portEdit")
self._4.addWidget(self.portEdit, 1, 1, 1, 1)
self.textLabel3 = QtGui.QLabel(self.layout7_2)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel3.sizePolicy().hasHeightForWidth())
self.textLabel3.setSizePolicy(sizePolicy)
self.textLabel3.setWordWrap(False)
self.textLabel3.setObjectName("textLabel3")
self._4.addWidget(self.textLabel3, 0, 1, 1, 1)
self.pwEdit = QtGui.QLineEdit(self.layout7_2)
self.pwEdit.setEchoMode(QtGui.QLineEdit.Password)
self.pwEdit.setObjectName("pwEdit")
self._4.addWidget(self.pwEdit, 3, 1, 1, 1)
self.textLabel1_2 = QtGui.QLabel(self.layout7_2)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_2.sizePolicy().hasHeightForWidth())
self.textLabel1_2.setSizePolicy(sizePolicy)
self.textLabel1_2.setWordWrap(False)
self.textLabel1_2.setObjectName("textLabel1_2")
self._4.addWidget(self.textLabel1_2, 2, 1, 1, 1)
self.textLabel4 = QtGui.QLabel(self.layout7_2)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel4.sizePolicy().hasHeightForWidth())
self.textLabel4.setSizePolicy(sizePolicy)
self.textLabel4.setWordWrap(False)
self.textLabel4.setObjectName("textLabel4")
self._4.addWidget(self.textLabel4, 2, 0, 1, 1)
self.hostnEdit = QtGui.QLineEdit(self.layout7_2)
self.hostnEdit.setObjectName("hostnEdit")
self._4.addWidget(self.hostnEdit, 1, 0, 1, 1)
self.uidEdit = QtGui.QLineEdit(self.layout7_2)
self.uidEdit.setObjectName("uidEdit")
self._4.addWidget(self.uidEdit, 3, 0, 1, 1)
self._3.addWidget(self.dbSpecGroupBox, 0, 1, 2, 1)
self._5 = QtGui.QVBoxLayout()
self._5.setObjectName("_5")
self.textLabel1_11 = QtGui.QLabel(self.Database_layout)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_11.sizePolicy().hasHeightForWidth())
self.textLabel1_11.setSizePolicy(sizePolicy)
self.textLabel1_11.setWordWrap(False)
self.textLabel1_11.setObjectName("textLabel1_11")
self._5.addWidget(self.textLabel1_11)
self.dbType = QtGui.QComboBox(self.Database_layout)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.dbType.sizePolicy().hasHeightForWidth())
self.dbType.setSizePolicy(sizePolicy)
self.dbType.setObjectName("dbType")
self.dbType.addItem(QtCore.QString())
self.dbType.addItem(QtCore.QString())
self.dbType.addItem(QtCore.QString())
self._5.addWidget(self.dbType)
self._3.addLayout(self._5, 0, 0, 1, 1)
self.verticalLayout.addWidget(self.splitter6)
self.tabWidget.addTab(self.Widget8, "")
self.Widget9 = QtGui.QWidget()
self.Widget9.setObjectName("Widget9")
self.layout9 = QtGui.QWidget(self.Widget9)
self.layout9.setGeometry(QtCore.QRect(9, 19, 304, 153))
self.layout9.setObjectName("layout9")
self._6 = QtGui.QGridLayout(self.layout9)
self._6.setObjectName("_6")
self.unameEdit = QtGui.QLineEdit(self.layout9)
self.unameEdit.setObjectName("unameEdit")
self._6.addWidget(self.unameEdit, 0, 1, 1, 3)
self.textLabel1_5 = QtGui.QLabel(self.layout9)
self.textLabel1_5.setWordWrap(False)
self.textLabel1_5.setObjectName("textLabel1_5")
self._6.addWidget(self.textLabel1_5, 3, 0, 1, 2)
self.langCombo = QtGui.QComboBox(self.layout9)
self.langCombo.setObjectName("langCombo")
self.langCombo.addItem(QtCore.QString())
self.langCombo.addItem(QtCore.QString())
self.langCombo.addItem(QtCore.QString())
self.langCombo.addItem(QtCore.QString())
self.langCombo.addItem(QtCore.QString())
self._6.addWidget(self.langCombo, 3, 2, 1, 2)
self.textLabel5 = QtGui.QLabel(self.layout9)
self.textLabel5.setWordWrap(False)
self.textLabel5.setObjectName("textLabel5")
self._6.addWidget(self.textLabel5, 1, 0, 1, 1)
self.textLabel2_3 = QtGui.QLabel(self.layout9)
self.textLabel2_3.setWordWrap(False)
self.textLabel2_3.setObjectName("textLabel2_3")
self._6.addWidget(self.textLabel2_3, 2, 0, 1, 3)
self.textLabel2_2 = QtGui.QLabel(self.layout9)
self.textLabel2_2.setWordWrap(False)
self.textLabel2_2.setObjectName("textLabel2_2")
self._6.addWidget(self.textLabel2_2, 0, 0, 1, 1)
self.editorEdit = QtGui.QLineEdit(self.layout9)
self.editorEdit.setObjectName("editorEdit")
self._6.addWidget(self.editorEdit, 1, 1, 1, 3)
self.pdfEdit = QtGui.QLineEdit(self.layout9)
self.pdfEdit.setObjectName("pdfEdit")
self._6.addWidget(self.pdfEdit, 2, 3, 1, 1)
self.tabWidget.addTab(self.Widget9, "")
self.TabPage = QtGui.QWidget()
self.TabPage.setObjectName("TabPage")
self.horizontalLayout = QtGui.QHBoxLayout(self.TabPage)
self.horizontalLayout.setObjectName("horizontalLayout")
self._7 = QtGui.QVBoxLayout()
self._7.setObjectName("_7")
self.textLabel5_2 = QtGui.QLabel(self.TabPage)
self.textLabel5_2.setWordWrap(False)
self.textLabel5_2.setObjectName("textLabel5_2")
self._7.addWidget(self.textLabel5_2)
self.textEdit1 = QtGui.QTextEdit(self.TabPage)
self.textEdit1.setObjectName("textEdit1")
self._7.addWidget(self.textEdit1)
self.horizontalLayout.addLayout(self._7)
self.line1 = QtGui.QFrame(self.TabPage)
self.line1.setFrameShape(QtGui.QFrame.VLine)
self.line1.setFrameShadow(QtGui.QFrame.Sunken)
self.line1.setLineWidth(3)
self.line1.setObjectName("line1")
self.horizontalLayout.addWidget(self.line1)
self._8 = QtGui.QVBoxLayout()
self._8.setObjectName("_8")
self._9 = QtGui.QVBoxLayout()
self._9.setObjectName("_9")
self._10 = QtGui.QVBoxLayout()
self._10.setObjectName("_10")
self.textLabel1_3 = QtGui.QLabel(self.TabPage)
self.textLabel1_3.setAlignment(QtCore.Qt.AlignCenter)
self.textLabel1_3.setWordWrap(False)
self.textLabel1_3.setObjectName("textLabel1_3")
self._10.addWidget(self.textLabel1_3)
self.dbBackup = QtGui.QPushButton(self.TabPage)
self.dbBackup.setEnabled(False)
self.dbBackup.setObjectName("dbBackup")
self._10.addWidget(self.dbBackup)
self.dbInfo = QtGui.QPushButton(self.TabPage)
self.dbInfo.setEnabled(False)
self.dbInfo.setObjectName("dbInfo")
self._10.addWidget(self.dbInfo)
self._9.addLayout(self._10)
self.line2 = QtGui.QFrame(self.TabPage)
self.line2.setFrameShape(QtGui.QFrame.HLine)
self.line2.setFrameShadow(QtGui.QFrame.Sunken)
self.line2.setLineWidth(2)
self.line2.setObjectName("line2")
self._9.addWidget(self.line2)
self._11 = QtGui.QVBoxLayout()
self._11.setObjectName("_11")
self.textLabel1_4 = QtGui.QLabel(self.TabPage)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_4.sizePolicy().hasHeightForWidth())
self.textLabel1_4.setSizePolicy(sizePolicy)
self.textLabel1_4.setAlignment(QtCore.Qt.AlignCenter)
self.textLabel1_4.setWordWrap(False)
self.textLabel1_4.setMargin(0)
self.textLabel1_4.setObjectName("textLabel1_4")
self._11.addWidget(self.textLabel1_4)
self.repOpen = QtGui.QPushButton(self.TabPage)
self.repOpen.setObjectName("repOpen")
self._11.addWidget(self.repOpen)
self._9.addLayout(self._11)
self._8.addLayout(self._9)
spacerItem2 = QtGui.QSpacerItem(20, 170, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self._8.addItem(spacerItem2)
self.horizontalLayout.addLayout(self._8)
self.tabWidget.addTab(self.TabPage, "")
self.visPage = QtGui.QWidget()
self.visPage.setObjectName("visPage")
self.gridLayout_3 = QtGui.QGridLayout(self.visPage)
self.gridLayout_3.setObjectName("gridLayout_3")
self.horizontalLayout_2 = QtGui.QHBoxLayout()
self.horizontalLayout_2.setObjectName("horizontalLayout_2")
self._13 = QtGui.QVBoxLayout()
self._13.setObjectName("_13")
self.textLabel1_9 = QtGui.QLabel(self.visPage)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_9.sizePolicy().hasHeightForWidth())
self.textLabel1_9.setSizePolicy(sizePolicy)
self.textLabel1_9.setWordWrap(False)
self.textLabel1_9.setObjectName("textLabel1_9")
self._13.addWidget(self.textLabel1_9)
self.consensusButton = QtGui.QPushButton(self.visPage)
self.consensusButton.setEnabled(False)
self.consensusButton.setObjectName("consensusButton")
self._13.addWidget(self.consensusButton)
self.horizontalLayout_2.addLayout(self._13)
spacerItem3 = QtGui.QSpacerItem(260, 20, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Minimum)
self.horizontalLayout_2.addItem(spacerItem3)
self.gridLayout_3.addLayout(self.horizontalLayout_2, 1, 0, 1, 1)
self.splitter = QtGui.QSplitter(self.visPage)
self.splitter.setOrientation(QtCore.Qt.Horizontal)
self.splitter.setObjectName("splitter")
self.layout20 = QtGui.QWidget(self.splitter)
self.layout20.setObjectName("layout20")
self._14 = QtGui.QVBoxLayout(self.layout20)
self._14.setObjectName("_14")
self.textLabel1_7 = QtGui.QLabel(self.layout20)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_7.sizePolicy().hasHeightForWidth())
self.textLabel1_7.setSizePolicy(sizePolicy)
self.textLabel1_7.setWordWrap(False)
self.textLabel1_7.setObjectName("textLabel1_7")
self._14.addWidget(self.textLabel1_7)
self.tableList = QtGui.QComboBox(self.layout20)
self.tableList.setObjectName("tableList")
self._14.addWidget(self.tableList)
self.textLabel1_10 = QtGui.QLabel(self.layout20)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_10.sizePolicy().hasHeightForWidth())
self.textLabel1_10.setSizePolicy(sizePolicy)
self.textLabel1_10.setWordWrap(False)
self.textLabel1_10.setObjectName("textLabel1_10")
self._14.addWidget(self.textLabel1_10)
self.variableList = QtGui.QComboBox(self.layout20)
self.variableList.setObjectName("variableList")
self._14.addWidget(self.variableList)
self.textLabel2_4 = QtGui.QLabel(self.layout20)
self.textLabel2_4.setEnabled(True)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel2_4.sizePolicy().hasHeightForWidth())
self.textLabel2_4.setSizePolicy(sizePolicy)
self.textLabel2_4.setWordWrap(False)
self.textLabel2_4.setObjectName("textLabel2_4")
self._14.addWidget(self.textLabel2_4)
self.mapList = QtGui.QComboBox(self.layout20)
self.mapList.setEnabled(True)
self.mapList.setObjectName("mapList")
self.mapList.addItem(QtCore.QString())
self._14.addWidget(self.mapList)
self.layout19 = QtGui.QWidget(self.splitter)
self.layout19.setObjectName("layout19")
self._15 = QtGui.QVBoxLayout(self.layout19)
self._15.setObjectName("_15")
self.dbscanButton = QtGui.QPushButton(self.layout19)
self.dbscanButton.setObjectName("dbscanButton")
self._15.addWidget(self.dbscanButton)
self.textLabel1_8 = QtGui.QLabel(self.layout19)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_8.sizePolicy().hasHeightForWidth())
self.textLabel1_8.setSizePolicy(sizePolicy)
self.textLabel1_8.setWordWrap(False)
self.textLabel1_8.setObjectName("textLabel1_8")
self._15.addWidget(self.textLabel1_8)
self.rateSpinBox = QtGui.QSpinBox(self.layout19)
self.rateSpinBox.setMinimum(1)
self.rateSpinBox.setMaximum(5)
self.rateSpinBox.setObjectName("rateSpinBox")
self._15.addWidget(self.rateSpinBox)
spacerItem4 = QtGui.QSpacerItem(20, 90, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self._15.addItem(spacerItem4)
self.playButton = QtGui.QPushButton(self.layout19)
self.playButton.setObjectName("playButton")
self._15.addWidget(self.playButton)
self.gridLayout_3.addWidget(self.splitter, 0, 0, 1, 1)
self.tabWidget.addTab(self.visPage, "")
self.verticalLayout_2.addWidget(self.tabWidget)
self._17 = QtGui.QHBoxLayout()
self._17.setObjectName("_17")
self.textLabel1_6 = QtGui.QLabel(self.centralwidget)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_6.sizePolicy().hasHeightForWidth())
self.textLabel1_6.setSizePolicy(sizePolicy)
self.textLabel1_6.setWordWrap(False)
self.textLabel1_6.setObjectName("textLabel1_6")
self._17.addWidget(self.textLabel1_6)
self.stepLCD = QtGui.QLCDNumber(self.centralwidget)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.stepLCD.sizePolicy().hasHeightForWidth())
self.stepLCD.setSizePolicy(sizePolicy)
self.stepLCD.setObjectName("stepLCD")
self._17.addWidget(self.stepLCD)
self.verticalLayout_2.addLayout(self._17)
self._18 = QtGui.QHBoxLayout()
self._18.setSpacing(6)
self._18.setMargin(0)
self._18.setObjectName("_18")
self.buttonHelp = QtGui.QPushButton(self.centralwidget)
self.buttonHelp.setAutoDefault(True)
self.buttonHelp.setObjectName("buttonHelp")
self._18.addWidget(self.buttonHelp)
spacerItem5 = QtGui.QSpacerItem(20, 20, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Minimum)
self._18.addItem(spacerItem5)
self.buttonRun = QtGui.QPushButton(self.centralwidget)
self.buttonRun.setAutoDefault(True)
self.buttonRun.setDefault(True)
self.buttonRun.setObjectName("buttonRun")
self._18.addWidget(self.buttonRun)
self.buttonExit = QtGui.QPushButton(self.centralwidget)
self.buttonExit.setAutoDefault(True)
self.buttonExit.setObjectName("buttonExit")
self._18.addWidget(self.buttonExit)
self.verticalLayout_2.addLayout(self._18)
MainWindow.setCentralWidget(self.centralwidget)
self.menubar = QtGui.QMenuBar(MainWindow)
self.menubar.setGeometry(QtCore.QRect(0, 0, 807, 27))
self.menubar.setObjectName("menubar")
self.menuFile = QtGui.QMenu(self.menubar)
self.menuFile.setObjectName("menuFile")
self.menuHelp = QtGui.QMenu(self.menubar)
self.menuHelp.setObjectName("menuHelp")
MainWindow.setMenuBar(self.menubar)
self.statusbar = QtGui.QStatusBar(MainWindow)
self.statusbar.setObjectName("statusbar")
MainWindow.setStatusBar(self.statusbar)
self.menubar.addAction(self.menuFile.menuAction())
self.menubar.addAction(self.menuHelp.menuAction())
self.retranslateUi(MainWindow)
self.tabWidget.setCurrentIndex(1)
self.dbType.setCurrentIndex(1)
QtCore.QMetaObject.connectSlotsByName(MainWindow)
def retranslateUi(self, MainWindow):
MainWindow.setWindowTitle(QtGui.QApplication.translate("MainWindow", "Epigrass", None, QtGui.QApplication.UnicodeUTF8))
self.modSpec.setTitle(QtGui.QApplication.translate("MainWindow", "Model Specification", None, QtGui.QApplication.UnicodeUTF8))
self.chooseButton.setText(QtGui.QApplication.translate("MainWindow", "Choose", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1.setText(QtGui.QApplication.translate("MainWindow", "Script Name:", None, QtGui.QApplication.UnicodeUTF8))
self.scriptNameEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "write the name of the your script or press the choose button on the right to select one.", None, QtGui.QApplication.UnicodeUTF8))
self.editButton.setText(QtGui.QApplication.translate("MainWindow", "Edit", None, QtGui.QApplication.UnicodeUTF8))
self.dbSpecGroupBox.setTitle(QtGui.QApplication.translate("MainWindow", "Database Specification", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel2.setText(QtGui.QApplication.translate("MainWindow", "Host:", None, QtGui.QApplication.UnicodeUTF8))
self.portEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Enter the port the server listens to.", None, QtGui.QApplication.UnicodeUTF8))
self.portEdit.setText(QtGui.QApplication.translate("MainWindow", "3306", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel3.setText(QtGui.QApplication.translate("MainWindow", "Port:", None, QtGui.QApplication.UnicodeUTF8))
self.pwEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Database password for the userid entered", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_2.setText(QtGui.QApplication.translate("MainWindow", "Password:", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel4.setText(QtGui.QApplication.translate("MainWindow", "Userid:", None, QtGui.QApplication.UnicodeUTF8))
self.hostnEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "This is the url of your database server.", None, QtGui.QApplication.UnicodeUTF8))
self.hostnEdit.setText(QtGui.QApplication.translate("MainWindow", "localhost", None, QtGui.QApplication.UnicodeUTF8))
self.uidEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "This is the userid for accessing the database server", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_11.setText(QtGui.QApplication.translate("MainWindow", "Database type:", None, QtGui.QApplication.UnicodeUTF8))
self.dbType.setToolTip(QtGui.QApplication.translate("MainWindow", "Select your database type", None, QtGui.QApplication.UnicodeUTF8))
self.dbType.setItemText(0, QtGui.QApplication.translate("MainWindow", "MySQL", None, QtGui.QApplication.UnicodeUTF8))
self.dbType.setItemText(1, QtGui.QApplication.translate("MainWindow", "SQLite", None, QtGui.QApplication.UnicodeUTF8))
self.dbType.setItemText(2, QtGui.QApplication.translate("MainWindow", "CSV", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.Widget8), QtGui.QApplication.translate("MainWindow", "Run Options", None, QtGui.QApplication.UnicodeUTF8))
self.unameEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Enter your full name. This will be added to the report.", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_5.setText(QtGui.QApplication.translate("MainWindow", "Language", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setToolTip(QtGui.QApplication.translate("MainWindow", "Select the language for the GUI", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(0, QtGui.QApplication.translate("MainWindow", "English", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(1, QtGui.QApplication.translate("MainWindow", "Brazilian portuguese", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(2, QtGui.QApplication.translate("MainWindow", "French", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(3, QtGui.QApplication.translate("MainWindow", "Russian", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(4, QtGui.QApplication.translate("MainWindow", "Spanish", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel5.setText(QtGui.QApplication.translate("MainWindow", "Editor", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel2_3.setText(QtGui.QApplication.translate("MainWindow", "PDF Viewer", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel2_2.setText(QtGui.QApplication.translate("MainWindow", "Name", None, QtGui.QApplication.UnicodeUTF8))
self.editorEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Enter your preferred text editor", None, QtGui.QApplication.UnicodeUTF8))
self.pdfEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Enter the name of your preferred PDF viewer", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.Widget9), QtGui.QApplication.translate("MainWindow", "Settings", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel5_2.setText(QtGui.QApplication.translate("MainWindow", "Simulation Status", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_3.setText(QtGui.QApplication.translate("MainWindow", "Database", None, QtGui.QApplication.UnicodeUTF8))
self.dbBackup.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here to backup the epigrass database ", None, QtGui.QApplication.UnicodeUTF8))
self.dbBackup.setText(QtGui.QApplication.translate("MainWindow", "Backup", None, QtGui.QApplication.UnicodeUTF8))
self.dbInfo.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here for a short description of the epigrass database", None, QtGui.QApplication.UnicodeUTF8))
self.dbInfo.setText(QtGui.QApplication.translate("MainWindow", "Info", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_4.setText(QtGui.QApplication.translate("MainWindow", "Report", None, QtGui.QApplication.UnicodeUTF8))
self.repOpen.setText(QtGui.QApplication.translate("MainWindow", "Open", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.TabPage), QtGui.QApplication.translate("MainWindow", "Utilities", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_9.setText(QtGui.QApplication.translate("MainWindow", "Spread Trees", None, QtGui.QApplication.UnicodeUTF8))
self.consensusButton.setToolTip(QtGui.QApplication.translate("MainWindow", "Select a directory with tree-files to build consensus on.", None, QtGui.QApplication.UnicodeUTF8))
self.consensusButton.setText(QtGui.QApplication.translate("MainWindow", "Consensus Tree", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_7.setText(QtGui.QApplication.translate("MainWindow", "Simulations stored:", None, QtGui.QApplication.UnicodeUTF8))
self.tableList.setToolTip(QtGui.QApplication.translate("MainWindow", "Select a database stored simulation", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_10.setText(QtGui.QApplication.translate("MainWindow", "Variable to display:", None, QtGui.QApplication.UnicodeUTF8))
self.variableList.setToolTip(QtGui.QApplication.translate("MainWindow", "Select a variable to display in the animation", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel2_4.setText(QtGui.QApplication.translate("MainWindow", "Maps available:", None, QtGui.QApplication.UnicodeUTF8))
self.mapList.setToolTip(QtGui.QApplication.translate("MainWindow", "Select a map", None, QtGui.QApplication.UnicodeUTF8))
self.mapList.setItemText(0, QtGui.QApplication.translate("MainWindow", "No map", None, QtGui.QApplication.UnicodeUTF8))
self.dbscanButton.setText(QtGui.QApplication.translate("MainWindow", "Scan DB", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_8.setText(QtGui.QApplication.translate("MainWindow", "Animation rate", None, QtGui.QApplication.UnicodeUTF8))
self.rateSpinBox.setToolTip(QtGui.QApplication.translate("MainWindow", "Time steps per second", None, QtGui.QApplication.UnicodeUTF8))
self.playButton.setText(QtGui.QApplication.translate("MainWindow", "Start animation", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.visPage), QtGui.QApplication.translate("MainWindow", "Visualization", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_6.setText(QtGui.QApplication.translate("MainWindow", "Progress:", None, QtGui.QApplication.UnicodeUTF8))
self.stepLCD.setToolTip(QtGui.QApplication.translate("MainWindow", "Simulation step", None, QtGui.QApplication.UnicodeUTF8))
self.buttonHelp.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here to open the userguide in the web browser", None, QtGui.QApplication.UnicodeUTF8))
self.buttonHelp.setText(QtGui.QApplication.translate("MainWindow", "&Help", None, QtGui.QApplication.UnicodeUTF8))
self.buttonHelp.setShortcut(QtGui.QApplication.translate("MainWindow", "F1", None, QtGui.QApplication.UnicodeUTF8))
self.buttonRun.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here to start your simulation", None, QtGui.QApplication.UnicodeUTF8))
self.buttonRun.setText(QtGui.QApplication.translate("MainWindow", "&Run", None, QtGui.QApplication.UnicodeUTF8))
self.buttonRun.setShortcut(QtGui.QApplication.translate("MainWindow", "Alt+R", None, QtGui.QApplication.UnicodeUTF8))
self.buttonExit.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here to leave Epigrass", None, QtGui.QApplication.UnicodeUTF8))
self.buttonExit.setText(QtGui.QApplication.translate("MainWindow", "&Exit", None, QtGui.QApplication.UnicodeUTF8))
self.buttonExit.setShortcut(QtGui.QApplication.translate("MainWindow", "Alt+E", None, QtGui.QApplication.UnicodeUTF8))
self.menuFile.setTitle(QtGui.QApplication.translate("MainWindow", "File", None, QtGui.QApplication.UnicodeUTF8))
self.menuHelp.setTitle(QtGui.QApplication.translate("MainWindow", "Help", None, QtGui.QApplication.UnicodeUTF8))
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
MainWindow = QtGui.QMainWindow()
ui = Ui_MainWindow()
ui.setupUi(MainWindow)
MainWindow.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/Ui_cpanel4new.py.bak 0000664 0000000 0000000 00000100524 12720633740 020667 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/fccoelho/Documents/Projects_software/epigrass/epigrassqt4/cpanel4new.ui'
#
# Created: Tue Aug 11 14:10:16 2009
# by: PyQt4 UI code generator 4.4.4
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
class Ui_MainWindow(object):
def setupUi(self, MainWindow):
MainWindow.setObjectName("MainWindow")
MainWindow.resize(807, 479)
MainWindow.setMaximumSize(QtCore.QSize(16777215, 479))
self.centralwidget = QtGui.QWidget(MainWindow)
self.centralwidget.setObjectName("centralwidget")
self.verticalLayout_2 = QtGui.QVBoxLayout(self.centralwidget)
self.verticalLayout_2.setObjectName("verticalLayout_2")
self.tabWidget = QtGui.QTabWidget(self.centralwidget)
self.tabWidget.setEnabled(True)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.MinimumExpanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.tabWidget.sizePolicy().hasHeightForWidth())
self.tabWidget.setSizePolicy(sizePolicy)
self.tabWidget.setMaximumSize(QtCore.QSize(16777215, 16777215))
self.tabWidget.setObjectName("tabWidget")
self.Widget8 = QtGui.QWidget()
self.Widget8.setObjectName("Widget8")
self.verticalLayout = QtGui.QVBoxLayout(self.Widget8)
self.verticalLayout.setObjectName("verticalLayout")
self.splitter6 = QtGui.QSplitter(self.Widget8)
self.splitter6.setOrientation(QtCore.Qt.Vertical)
self.splitter6.setObjectName("splitter6")
self.modSpec = QtGui.QGroupBox(self.splitter6)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.MinimumExpanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.modSpec.sizePolicy().hasHeightForWidth())
self.modSpec.setSizePolicy(sizePolicy)
self.modSpec.setMinimumSize(QtCore.QSize(518, 80))
self.modSpec.setObjectName("modSpec")
self.gridLayout = QtGui.QGridLayout(self.modSpec)
self.gridLayout.setObjectName("gridLayout")
self._2 = QtGui.QGridLayout()
self._2.setObjectName("_2")
self.chooseButton = QtGui.QPushButton(self.modSpec)
self.chooseButton.setObjectName("chooseButton")
self._2.addWidget(self.chooseButton, 1, 2, 1, 1)
self.textLabel1 = QtGui.QLabel(self.modSpec)
self.textLabel1.setWordWrap(False)
self.textLabel1.setObjectName("textLabel1")
self._2.addWidget(self.textLabel1, 0, 0, 1, 1)
spacerItem = QtGui.QSpacerItem(370, 20, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Minimum)
self._2.addItem(spacerItem, 0, 1, 1, 3)
self.scriptNameEdit = QtGui.QLineEdit(self.modSpec)
self.scriptNameEdit.setObjectName("scriptNameEdit")
self._2.addWidget(self.scriptNameEdit, 1, 0, 1, 2)
self.editButton = QtGui.QPushButton(self.modSpec)
self.editButton.setObjectName("editButton")
self._2.addWidget(self.editButton, 1, 3, 1, 1)
self.gridLayout.addLayout(self._2, 0, 0, 1, 1)
self.Database_layout = QtGui.QWidget(self.splitter6)
self.Database_layout.setObjectName("Database_layout")
self._3 = QtGui.QGridLayout(self.Database_layout)
self._3.setObjectName("_3")
spacerItem1 = QtGui.QSpacerItem(20, 100, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self._3.addItem(spacerItem1, 1, 0, 1, 1)
self.dbSpecGroupBox = QtGui.QGroupBox(self.Database_layout)
self.dbSpecGroupBox.setEnabled(False)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.MinimumExpanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.dbSpecGroupBox.sizePolicy().hasHeightForWidth())
self.dbSpecGroupBox.setSizePolicy(sizePolicy)
self.dbSpecGroupBox.setObjectName("dbSpecGroupBox")
self.layout7_2 = QtGui.QWidget(self.dbSpecGroupBox)
self.layout7_2.setGeometry(QtCore.QRect(10, 20, 360, 140))
self.layout7_2.setObjectName("layout7_2")
self._4 = QtGui.QGridLayout(self.layout7_2)
self._4.setObjectName("_4")
self.textLabel2 = QtGui.QLabel(self.layout7_2)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel2.sizePolicy().hasHeightForWidth())
self.textLabel2.setSizePolicy(sizePolicy)
self.textLabel2.setWordWrap(False)
self.textLabel2.setObjectName("textLabel2")
self._4.addWidget(self.textLabel2, 0, 0, 1, 1)
self.portEdit = QtGui.QLineEdit(self.layout7_2)
self.portEdit.setObjectName("portEdit")
self._4.addWidget(self.portEdit, 1, 1, 1, 1)
self.textLabel3 = QtGui.QLabel(self.layout7_2)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel3.sizePolicy().hasHeightForWidth())
self.textLabel3.setSizePolicy(sizePolicy)
self.textLabel3.setWordWrap(False)
self.textLabel3.setObjectName("textLabel3")
self._4.addWidget(self.textLabel3, 0, 1, 1, 1)
self.pwEdit = QtGui.QLineEdit(self.layout7_2)
self.pwEdit.setEchoMode(QtGui.QLineEdit.Password)
self.pwEdit.setObjectName("pwEdit")
self._4.addWidget(self.pwEdit, 3, 1, 1, 1)
self.textLabel1_2 = QtGui.QLabel(self.layout7_2)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_2.sizePolicy().hasHeightForWidth())
self.textLabel1_2.setSizePolicy(sizePolicy)
self.textLabel1_2.setWordWrap(False)
self.textLabel1_2.setObjectName("textLabel1_2")
self._4.addWidget(self.textLabel1_2, 2, 1, 1, 1)
self.textLabel4 = QtGui.QLabel(self.layout7_2)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel4.sizePolicy().hasHeightForWidth())
self.textLabel4.setSizePolicy(sizePolicy)
self.textLabel4.setWordWrap(False)
self.textLabel4.setObjectName("textLabel4")
self._4.addWidget(self.textLabel4, 2, 0, 1, 1)
self.hostnEdit = QtGui.QLineEdit(self.layout7_2)
self.hostnEdit.setObjectName("hostnEdit")
self._4.addWidget(self.hostnEdit, 1, 0, 1, 1)
self.uidEdit = QtGui.QLineEdit(self.layout7_2)
self.uidEdit.setObjectName("uidEdit")
self._4.addWidget(self.uidEdit, 3, 0, 1, 1)
self._3.addWidget(self.dbSpecGroupBox, 0, 1, 2, 1)
self._5 = QtGui.QVBoxLayout()
self._5.setObjectName("_5")
self.textLabel1_11 = QtGui.QLabel(self.Database_layout)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_11.sizePolicy().hasHeightForWidth())
self.textLabel1_11.setSizePolicy(sizePolicy)
self.textLabel1_11.setWordWrap(False)
self.textLabel1_11.setObjectName("textLabel1_11")
self._5.addWidget(self.textLabel1_11)
self.dbType = QtGui.QComboBox(self.Database_layout)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.dbType.sizePolicy().hasHeightForWidth())
self.dbType.setSizePolicy(sizePolicy)
self.dbType.setObjectName("dbType")
self.dbType.addItem(QtCore.QString())
self.dbType.addItem(QtCore.QString())
self.dbType.addItem(QtCore.QString())
self._5.addWidget(self.dbType)
self._3.addLayout(self._5, 0, 0, 1, 1)
self.verticalLayout.addWidget(self.splitter6)
self.tabWidget.addTab(self.Widget8, "")
self.Widget9 = QtGui.QWidget()
self.Widget9.setObjectName("Widget9")
self.layout9 = QtGui.QWidget(self.Widget9)
self.layout9.setGeometry(QtCore.QRect(9, 19, 304, 153))
self.layout9.setObjectName("layout9")
self._6 = QtGui.QGridLayout(self.layout9)
self._6.setObjectName("_6")
self.unameEdit = QtGui.QLineEdit(self.layout9)
self.unameEdit.setObjectName("unameEdit")
self._6.addWidget(self.unameEdit, 0, 1, 1, 3)
self.textLabel1_5 = QtGui.QLabel(self.layout9)
self.textLabel1_5.setWordWrap(False)
self.textLabel1_5.setObjectName("textLabel1_5")
self._6.addWidget(self.textLabel1_5, 3, 0, 1, 2)
self.langCombo = QtGui.QComboBox(self.layout9)
self.langCombo.setObjectName("langCombo")
self.langCombo.addItem(QtCore.QString())
self.langCombo.addItem(QtCore.QString())
self.langCombo.addItem(QtCore.QString())
self.langCombo.addItem(QtCore.QString())
self.langCombo.addItem(QtCore.QString())
self._6.addWidget(self.langCombo, 3, 2, 1, 2)
self.textLabel5 = QtGui.QLabel(self.layout9)
self.textLabel5.setWordWrap(False)
self.textLabel5.setObjectName("textLabel5")
self._6.addWidget(self.textLabel5, 1, 0, 1, 1)
self.textLabel2_3 = QtGui.QLabel(self.layout9)
self.textLabel2_3.setWordWrap(False)
self.textLabel2_3.setObjectName("textLabel2_3")
self._6.addWidget(self.textLabel2_3, 2, 0, 1, 3)
self.textLabel2_2 = QtGui.QLabel(self.layout9)
self.textLabel2_2.setWordWrap(False)
self.textLabel2_2.setObjectName("textLabel2_2")
self._6.addWidget(self.textLabel2_2, 0, 0, 1, 1)
self.editorEdit = QtGui.QLineEdit(self.layout9)
self.editorEdit.setObjectName("editorEdit")
self._6.addWidget(self.editorEdit, 1, 1, 1, 3)
self.pdfEdit = QtGui.QLineEdit(self.layout9)
self.pdfEdit.setObjectName("pdfEdit")
self._6.addWidget(self.pdfEdit, 2, 3, 1, 1)
self.tabWidget.addTab(self.Widget9, "")
self.TabPage = QtGui.QWidget()
self.TabPage.setObjectName("TabPage")
self.horizontalLayout = QtGui.QHBoxLayout(self.TabPage)
self.horizontalLayout.setObjectName("horizontalLayout")
self._7 = QtGui.QVBoxLayout()
self._7.setObjectName("_7")
self.textLabel5_2 = QtGui.QLabel(self.TabPage)
self.textLabel5_2.setWordWrap(False)
self.textLabel5_2.setObjectName("textLabel5_2")
self._7.addWidget(self.textLabel5_2)
self.textEdit1 = QtGui.QTextEdit(self.TabPage)
self.textEdit1.setObjectName("textEdit1")
self._7.addWidget(self.textEdit1)
self.horizontalLayout.addLayout(self._7)
self.line1 = QtGui.QFrame(self.TabPage)
self.line1.setFrameShape(QtGui.QFrame.VLine)
self.line1.setFrameShadow(QtGui.QFrame.Sunken)
self.line1.setLineWidth(3)
self.line1.setObjectName("line1")
self.horizontalLayout.addWidget(self.line1)
self._8 = QtGui.QVBoxLayout()
self._8.setObjectName("_8")
self._9 = QtGui.QVBoxLayout()
self._9.setObjectName("_9")
self._10 = QtGui.QVBoxLayout()
self._10.setObjectName("_10")
self.textLabel1_3 = QtGui.QLabel(self.TabPage)
self.textLabel1_3.setAlignment(QtCore.Qt.AlignCenter)
self.textLabel1_3.setWordWrap(False)
self.textLabel1_3.setObjectName("textLabel1_3")
self._10.addWidget(self.textLabel1_3)
self.dbBackup = QtGui.QPushButton(self.TabPage)
self.dbBackup.setEnabled(False)
self.dbBackup.setObjectName("dbBackup")
self._10.addWidget(self.dbBackup)
self.dbInfo = QtGui.QPushButton(self.TabPage)
self.dbInfo.setEnabled(False)
self.dbInfo.setObjectName("dbInfo")
self._10.addWidget(self.dbInfo)
self._9.addLayout(self._10)
self.line2 = QtGui.QFrame(self.TabPage)
self.line2.setFrameShape(QtGui.QFrame.HLine)
self.line2.setFrameShadow(QtGui.QFrame.Sunken)
self.line2.setLineWidth(2)
self.line2.setObjectName("line2")
self._9.addWidget(self.line2)
self._11 = QtGui.QVBoxLayout()
self._11.setObjectName("_11")
self.textLabel1_4 = QtGui.QLabel(self.TabPage)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_4.sizePolicy().hasHeightForWidth())
self.textLabel1_4.setSizePolicy(sizePolicy)
self.textLabel1_4.setAlignment(QtCore.Qt.AlignCenter)
self.textLabel1_4.setWordWrap(False)
self.textLabel1_4.setMargin(0)
self.textLabel1_4.setObjectName("textLabel1_4")
self._11.addWidget(self.textLabel1_4)
self.repOpen = QtGui.QPushButton(self.TabPage)
self.repOpen.setObjectName("repOpen")
self._11.addWidget(self.repOpen)
self._9.addLayout(self._11)
self._8.addLayout(self._9)
spacerItem2 = QtGui.QSpacerItem(20, 170, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self._8.addItem(spacerItem2)
self.horizontalLayout.addLayout(self._8)
self.tabWidget.addTab(self.TabPage, "")
self.visPage = QtGui.QWidget()
self.visPage.setObjectName("visPage")
self.gridLayout_3 = QtGui.QGridLayout(self.visPage)
self.gridLayout_3.setObjectName("gridLayout_3")
self.horizontalLayout_2 = QtGui.QHBoxLayout()
self.horizontalLayout_2.setObjectName("horizontalLayout_2")
self._13 = QtGui.QVBoxLayout()
self._13.setObjectName("_13")
self.textLabel1_9 = QtGui.QLabel(self.visPage)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_9.sizePolicy().hasHeightForWidth())
self.textLabel1_9.setSizePolicy(sizePolicy)
self.textLabel1_9.setWordWrap(False)
self.textLabel1_9.setObjectName("textLabel1_9")
self._13.addWidget(self.textLabel1_9)
self.consensusButton = QtGui.QPushButton(self.visPage)
self.consensusButton.setEnabled(False)
self.consensusButton.setObjectName("consensusButton")
self._13.addWidget(self.consensusButton)
self.horizontalLayout_2.addLayout(self._13)
spacerItem3 = QtGui.QSpacerItem(260, 20, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Minimum)
self.horizontalLayout_2.addItem(spacerItem3)
self.gridLayout_3.addLayout(self.horizontalLayout_2, 1, 0, 1, 1)
self.splitter = QtGui.QSplitter(self.visPage)
self.splitter.setOrientation(QtCore.Qt.Horizontal)
self.splitter.setObjectName("splitter")
self.layout20 = QtGui.QWidget(self.splitter)
self.layout20.setObjectName("layout20")
self._14 = QtGui.QVBoxLayout(self.layout20)
self._14.setObjectName("_14")
self.textLabel1_7 = QtGui.QLabel(self.layout20)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_7.sizePolicy().hasHeightForWidth())
self.textLabel1_7.setSizePolicy(sizePolicy)
self.textLabel1_7.setWordWrap(False)
self.textLabel1_7.setObjectName("textLabel1_7")
self._14.addWidget(self.textLabel1_7)
self.tableList = QtGui.QComboBox(self.layout20)
self.tableList.setObjectName("tableList")
self._14.addWidget(self.tableList)
self.textLabel1_10 = QtGui.QLabel(self.layout20)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_10.sizePolicy().hasHeightForWidth())
self.textLabel1_10.setSizePolicy(sizePolicy)
self.textLabel1_10.setWordWrap(False)
self.textLabel1_10.setObjectName("textLabel1_10")
self._14.addWidget(self.textLabel1_10)
self.variableList = QtGui.QComboBox(self.layout20)
self.variableList.setObjectName("variableList")
self._14.addWidget(self.variableList)
self.textLabel2_4 = QtGui.QLabel(self.layout20)
self.textLabel2_4.setEnabled(True)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel2_4.sizePolicy().hasHeightForWidth())
self.textLabel2_4.setSizePolicy(sizePolicy)
self.textLabel2_4.setWordWrap(False)
self.textLabel2_4.setObjectName("textLabel2_4")
self._14.addWidget(self.textLabel2_4)
self.mapList = QtGui.QComboBox(self.layout20)
self.mapList.setEnabled(True)
self.mapList.setObjectName("mapList")
self.mapList.addItem(QtCore.QString())
self._14.addWidget(self.mapList)
self.layout19 = QtGui.QWidget(self.splitter)
self.layout19.setObjectName("layout19")
self._15 = QtGui.QVBoxLayout(self.layout19)
self._15.setObjectName("_15")
self.dbscanButton = QtGui.QPushButton(self.layout19)
self.dbscanButton.setObjectName("dbscanButton")
self._15.addWidget(self.dbscanButton)
self.textLabel1_8 = QtGui.QLabel(self.layout19)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_8.sizePolicy().hasHeightForWidth())
self.textLabel1_8.setSizePolicy(sizePolicy)
self.textLabel1_8.setWordWrap(False)
self.textLabel1_8.setObjectName("textLabel1_8")
self._15.addWidget(self.textLabel1_8)
self.rateSpinBox = QtGui.QSpinBox(self.layout19)
self.rateSpinBox.setMinimum(1)
self.rateSpinBox.setMaximum(5)
self.rateSpinBox.setObjectName("rateSpinBox")
self._15.addWidget(self.rateSpinBox)
spacerItem4 = QtGui.QSpacerItem(20, 90, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self._15.addItem(spacerItem4)
self.playButton = QtGui.QPushButton(self.layout19)
self.playButton.setObjectName("playButton")
self._15.addWidget(self.playButton)
self.gridLayout_3.addWidget(self.splitter, 0, 0, 1, 1)
self.tabWidget.addTab(self.visPage, "")
self.verticalLayout_2.addWidget(self.tabWidget)
self._17 = QtGui.QHBoxLayout()
self._17.setObjectName("_17")
self.textLabel1_6 = QtGui.QLabel(self.centralwidget)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.textLabel1_6.sizePolicy().hasHeightForWidth())
self.textLabel1_6.setSizePolicy(sizePolicy)
self.textLabel1_6.setWordWrap(False)
self.textLabel1_6.setObjectName("textLabel1_6")
self._17.addWidget(self.textLabel1_6)
self.stepLCD = QtGui.QLCDNumber(self.centralwidget)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.stepLCD.sizePolicy().hasHeightForWidth())
self.stepLCD.setSizePolicy(sizePolicy)
self.stepLCD.setObjectName("stepLCD")
self._17.addWidget(self.stepLCD)
self.verticalLayout_2.addLayout(self._17)
self._18 = QtGui.QHBoxLayout()
self._18.setSpacing(6)
self._18.setMargin(0)
self._18.setObjectName("_18")
self.buttonHelp = QtGui.QPushButton(self.centralwidget)
self.buttonHelp.setAutoDefault(True)
self.buttonHelp.setObjectName("buttonHelp")
self._18.addWidget(self.buttonHelp)
spacerItem5 = QtGui.QSpacerItem(20, 20, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Minimum)
self._18.addItem(spacerItem5)
self.buttonRun = QtGui.QPushButton(self.centralwidget)
self.buttonRun.setAutoDefault(True)
self.buttonRun.setDefault(True)
self.buttonRun.setObjectName("buttonRun")
self._18.addWidget(self.buttonRun)
self.buttonExit = QtGui.QPushButton(self.centralwidget)
self.buttonExit.setAutoDefault(True)
self.buttonExit.setObjectName("buttonExit")
self._18.addWidget(self.buttonExit)
self.verticalLayout_2.addLayout(self._18)
MainWindow.setCentralWidget(self.centralwidget)
self.menubar = QtGui.QMenuBar(MainWindow)
self.menubar.setGeometry(QtCore.QRect(0, 0, 807, 27))
self.menubar.setObjectName("menubar")
self.menuFile = QtGui.QMenu(self.menubar)
self.menuFile.setObjectName("menuFile")
self.menuHelp = QtGui.QMenu(self.menubar)
self.menuHelp.setObjectName("menuHelp")
MainWindow.setMenuBar(self.menubar)
self.statusbar = QtGui.QStatusBar(MainWindow)
self.statusbar.setObjectName("statusbar")
MainWindow.setStatusBar(self.statusbar)
self.menubar.addAction(self.menuFile.menuAction())
self.menubar.addAction(self.menuHelp.menuAction())
self.retranslateUi(MainWindow)
self.tabWidget.setCurrentIndex(1)
self.dbType.setCurrentIndex(1)
QtCore.QMetaObject.connectSlotsByName(MainWindow)
def retranslateUi(self, MainWindow):
MainWindow.setWindowTitle(QtGui.QApplication.translate("MainWindow", "Epigrass", None, QtGui.QApplication.UnicodeUTF8))
self.modSpec.setTitle(QtGui.QApplication.translate("MainWindow", "Model Specification", None, QtGui.QApplication.UnicodeUTF8))
self.chooseButton.setText(QtGui.QApplication.translate("MainWindow", "Choose", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1.setText(QtGui.QApplication.translate("MainWindow", "Script Name:", None, QtGui.QApplication.UnicodeUTF8))
self.scriptNameEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "write the name of the your script or press the choose button on the right to select one.", None, QtGui.QApplication.UnicodeUTF8))
self.editButton.setText(QtGui.QApplication.translate("MainWindow", "Edit", None, QtGui.QApplication.UnicodeUTF8))
self.dbSpecGroupBox.setTitle(QtGui.QApplication.translate("MainWindow", "Database Specification", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel2.setText(QtGui.QApplication.translate("MainWindow", "Host:", None, QtGui.QApplication.UnicodeUTF8))
self.portEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Enter the port the server listens to.", None, QtGui.QApplication.UnicodeUTF8))
self.portEdit.setText(QtGui.QApplication.translate("MainWindow", "3306", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel3.setText(QtGui.QApplication.translate("MainWindow", "Port:", None, QtGui.QApplication.UnicodeUTF8))
self.pwEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Database password for the userid entered", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_2.setText(QtGui.QApplication.translate("MainWindow", "Password:", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel4.setText(QtGui.QApplication.translate("MainWindow", "Userid:", None, QtGui.QApplication.UnicodeUTF8))
self.hostnEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "This is the url of your database server.", None, QtGui.QApplication.UnicodeUTF8))
self.hostnEdit.setText(QtGui.QApplication.translate("MainWindow", "localhost", None, QtGui.QApplication.UnicodeUTF8))
self.uidEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "This is the userid for accessing the database server", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_11.setText(QtGui.QApplication.translate("MainWindow", "Database type:", None, QtGui.QApplication.UnicodeUTF8))
self.dbType.setToolTip(QtGui.QApplication.translate("MainWindow", "Select your database type", None, QtGui.QApplication.UnicodeUTF8))
self.dbType.setItemText(0, QtGui.QApplication.translate("MainWindow", "MySQL", None, QtGui.QApplication.UnicodeUTF8))
self.dbType.setItemText(1, QtGui.QApplication.translate("MainWindow", "SQLite", None, QtGui.QApplication.UnicodeUTF8))
self.dbType.setItemText(2, QtGui.QApplication.translate("MainWindow", "CSV", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.Widget8), QtGui.QApplication.translate("MainWindow", "Run Options", None, QtGui.QApplication.UnicodeUTF8))
self.unameEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Enter your full name. This will be added to the report.", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_5.setText(QtGui.QApplication.translate("MainWindow", "Language", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setToolTip(QtGui.QApplication.translate("MainWindow", "Select the language for the GUI", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(0, QtGui.QApplication.translate("MainWindow", "English", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(1, QtGui.QApplication.translate("MainWindow", "Brazilian portuguese", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(2, QtGui.QApplication.translate("MainWindow", "French", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(3, QtGui.QApplication.translate("MainWindow", "Russian", None, QtGui.QApplication.UnicodeUTF8))
self.langCombo.setItemText(4, QtGui.QApplication.translate("MainWindow", "Spanish", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel5.setText(QtGui.QApplication.translate("MainWindow", "Editor", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel2_3.setText(QtGui.QApplication.translate("MainWindow", "PDF Viewer", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel2_2.setText(QtGui.QApplication.translate("MainWindow", "Name", None, QtGui.QApplication.UnicodeUTF8))
self.editorEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Enter your preferred text editor", None, QtGui.QApplication.UnicodeUTF8))
self.pdfEdit.setToolTip(QtGui.QApplication.translate("MainWindow", "Enter the name of your preferred PDF viewer", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.Widget9), QtGui.QApplication.translate("MainWindow", "Settings", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel5_2.setText(QtGui.QApplication.translate("MainWindow", "Simulation Status", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_3.setText(QtGui.QApplication.translate("MainWindow", "Database", None, QtGui.QApplication.UnicodeUTF8))
self.dbBackup.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here to backup the epigrass database ", None, QtGui.QApplication.UnicodeUTF8))
self.dbBackup.setText(QtGui.QApplication.translate("MainWindow", "Backup", None, QtGui.QApplication.UnicodeUTF8))
self.dbInfo.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here for a short description of the epigrass database", None, QtGui.QApplication.UnicodeUTF8))
self.dbInfo.setText(QtGui.QApplication.translate("MainWindow", "Info", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_4.setText(QtGui.QApplication.translate("MainWindow", "Report", None, QtGui.QApplication.UnicodeUTF8))
self.repOpen.setText(QtGui.QApplication.translate("MainWindow", "Open", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.TabPage), QtGui.QApplication.translate("MainWindow", "Utilities", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_9.setText(QtGui.QApplication.translate("MainWindow", "Spread Trees", None, QtGui.QApplication.UnicodeUTF8))
self.consensusButton.setToolTip(QtGui.QApplication.translate("MainWindow", "Select a directory with tree-files to build consensus on.", None, QtGui.QApplication.UnicodeUTF8))
self.consensusButton.setText(QtGui.QApplication.translate("MainWindow", "Consensus Tree", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_7.setText(QtGui.QApplication.translate("MainWindow", "Simulations stored:", None, QtGui.QApplication.UnicodeUTF8))
self.tableList.setToolTip(QtGui.QApplication.translate("MainWindow", "Select a database stored simulation", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_10.setText(QtGui.QApplication.translate("MainWindow", "Variable to display:", None, QtGui.QApplication.UnicodeUTF8))
self.variableList.setToolTip(QtGui.QApplication.translate("MainWindow", "Select a variable to display in the animation", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel2_4.setText(QtGui.QApplication.translate("MainWindow", "Maps available:", None, QtGui.QApplication.UnicodeUTF8))
self.mapList.setToolTip(QtGui.QApplication.translate("MainWindow", "Select a map", None, QtGui.QApplication.UnicodeUTF8))
self.mapList.setItemText(0, QtGui.QApplication.translate("MainWindow", "No map", None, QtGui.QApplication.UnicodeUTF8))
self.dbscanButton.setText(QtGui.QApplication.translate("MainWindow", "Scan DB", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_8.setText(QtGui.QApplication.translate("MainWindow", "Animation rate", None, QtGui.QApplication.UnicodeUTF8))
self.rateSpinBox.setToolTip(QtGui.QApplication.translate("MainWindow", "Time steps per second", None, QtGui.QApplication.UnicodeUTF8))
self.playButton.setText(QtGui.QApplication.translate("MainWindow", "Start animation", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.visPage), QtGui.QApplication.translate("MainWindow", "Visualization", None, QtGui.QApplication.UnicodeUTF8))
self.textLabel1_6.setText(QtGui.QApplication.translate("MainWindow", "Progress:", None, QtGui.QApplication.UnicodeUTF8))
self.stepLCD.setToolTip(QtGui.QApplication.translate("MainWindow", "Simulation step", None, QtGui.QApplication.UnicodeUTF8))
self.buttonHelp.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here to open the userguide in the web browser", None, QtGui.QApplication.UnicodeUTF8))
self.buttonHelp.setText(QtGui.QApplication.translate("MainWindow", "&Help", None, QtGui.QApplication.UnicodeUTF8))
self.buttonHelp.setShortcut(QtGui.QApplication.translate("MainWindow", "F1", None, QtGui.QApplication.UnicodeUTF8))
self.buttonRun.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here to start your simulation", None, QtGui.QApplication.UnicodeUTF8))
self.buttonRun.setText(QtGui.QApplication.translate("MainWindow", "&Run", None, QtGui.QApplication.UnicodeUTF8))
self.buttonRun.setShortcut(QtGui.QApplication.translate("MainWindow", "Alt+R", None, QtGui.QApplication.UnicodeUTF8))
self.buttonExit.setToolTip(QtGui.QApplication.translate("MainWindow", "Click here to leave Epigrass", None, QtGui.QApplication.UnicodeUTF8))
self.buttonExit.setText(QtGui.QApplication.translate("MainWindow", "&Exit", None, QtGui.QApplication.UnicodeUTF8))
self.buttonExit.setShortcut(QtGui.QApplication.translate("MainWindow", "Alt+E", None, QtGui.QApplication.UnicodeUTF8))
self.menuFile.setTitle(QtGui.QApplication.translate("MainWindow", "File", None, QtGui.QApplication.UnicodeUTF8))
self.menuHelp.setTitle(QtGui.QApplication.translate("MainWindow", "Help", None, QtGui.QApplication.UnicodeUTF8))
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
MainWindow = QtGui.QMainWindow()
ui = Ui_MainWindow()
ui.setupUi(MainWindow)
MainWindow.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/Ui_display.py 0000664 0000000 0000000 00000017102 12772733376 017554 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/fccoelho/Documents/Projects_software/EpigrassQt4/Epigrass/display.ui'
#
# Created: Sun Sep 18 08:59:10 2011
# by: PyQt4 UI code generator 4.8.3
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
try:
_fromUtf8 = QtCore.QString.fromUtf8
except AttributeError:
_fromUtf8 = lambda s: s
class Ui_Form(object):
def setupUi(self, Form):
Form.setObjectName(_fromUtf8("Form"))
Form.resize(820, 739)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(Form.sizePolicy().hasHeightForWidth())
Form.setSizePolicy(sizePolicy)
Form.setMinimumSize(QtCore.QSize(100, 600))
self.verticalLayout = QtGui.QVBoxLayout(Form)
self.verticalLayout.setObjectName(_fromUtf8("verticalLayout"))
self.label = QtGui.QLabel(Form)
self.label.setObjectName(_fromUtf8("label"))
self.verticalLayout.addWidget(self.label)
self.splitter_2 = QtGui.QSplitter(Form)
self.splitter_2.setOrientation(QtCore.Qt.Horizontal)
self.splitter_2.setObjectName(_fromUtf8("splitter_2"))
self.splitter = QtGui.QSplitter(self.splitter_2)
self.splitter.setOrientation(QtCore.Qt.Vertical)
self.splitter.setObjectName(_fromUtf8("splitter"))
self.mapView = QtGui.QGraphicsView(self.splitter)
self.mapView.setProperty(_fromUtf8("cursor"), QtCore.Qt.CrossCursor)
self.mapView.setToolTip(_fromUtf8(""))
self.mapView.setAutoFillBackground(True)
self.mapView.setObjectName(_fromUtf8("mapView"))
self.layoutWidget = QtGui.QWidget(self.splitter)
self.layoutWidget.setObjectName(_fromUtf8("layoutWidget"))
self.vboxlayout = QtGui.QVBoxLayout(self.layoutWidget)
self.vboxlayout.setMargin(0)
self.vboxlayout.setObjectName(_fromUtf8("vboxlayout"))
self.horizontalSlider = QtGui.QSlider(self.layoutWidget)
self.horizontalSlider.setOrientation(QtCore.Qt.Horizontal)
self.horizontalSlider.setTickPosition(QtGui.QSlider.TicksBelow)
self.horizontalSlider.setTickInterval(0)
self.horizontalSlider.setObjectName(_fromUtf8("horizontalSlider"))
self.vboxlayout.addWidget(self.horizontalSlider)
self.hboxlayout = QtGui.QHBoxLayout()
self.hboxlayout.setObjectName(_fromUtf8("hboxlayout"))
self.label_2 = QtGui.QLabel(self.layoutWidget)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Fixed, QtGui.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.label_2.sizePolicy().hasHeightForWidth())
self.label_2.setSizePolicy(sizePolicy)
self.label_2.setObjectName(_fromUtf8("label_2"))
self.hboxlayout.addWidget(self.label_2)
spacerItem = QtGui.QSpacerItem(461, 23, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Minimum)
self.hboxlayout.addItem(spacerItem)
self.lcdNumber = QtGui.QLCDNumber(self.layoutWidget)
self.lcdNumber.setObjectName(_fromUtf8("lcdNumber"))
self.hboxlayout.addWidget(self.lcdNumber)
self.vboxlayout.addLayout(self.hboxlayout)
self.qwtPlot = QwtPlot(self.layoutWidget)
self.qwtPlot.setObjectName(_fromUtf8("qwtPlot"))
self.vboxlayout.addWidget(self.qwtPlot)
self.showSumBox = QtGui.QCheckBox(self.layoutWidget)
self.showSumBox.setChecked(True)
self.showSumBox.setObjectName(_fromUtf8("showSumBox"))
self.vboxlayout.addWidget(self.showSumBox)
self.layoutWidget1 = QtGui.QWidget(self.splitter_2)
self.layoutWidget1.setObjectName(_fromUtf8("layoutWidget1"))
self.vboxlayout1 = QtGui.QVBoxLayout(self.layoutWidget1)
self.vboxlayout1.setSizeConstraint(QtGui.QLayout.SetDefaultConstraint)
self.vboxlayout1.setMargin(0)
self.vboxlayout1.setObjectName(_fromUtf8("vboxlayout1"))
self.pushButton = QtGui.QPushButton(self.layoutWidget1)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Fixed, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.pushButton.sizePolicy().hasHeightForWidth())
self.pushButton.setSizePolicy(sizePolicy)
self.pushButton.setObjectName(_fromUtf8("pushButton"))
self.vboxlayout1.addWidget(self.pushButton)
self.pushButton_2 = QtGui.QPushButton(self.layoutWidget1)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Fixed, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.pushButton_2.sizePolicy().hasHeightForWidth())
self.pushButton_2.setSizePolicy(sizePolicy)
self.pushButton_2.setObjectName(_fromUtf8("pushButton_2"))
self.vboxlayout1.addWidget(self.pushButton_2)
self.scrollArea = QtGui.QScrollArea(self.layoutWidget1)
self.scrollArea.setMinimumSize(QtCore.QSize(0, 400))
self.scrollArea.setWidgetResizable(True)
self.scrollArea.setObjectName(_fromUtf8("scrollArea"))
self.scrollAreaWidgetContents = QtGui.QWidget()
self.scrollAreaWidgetContents.setGeometry(QtCore.QRect(0, 0, 81, 394))
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Expanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.scrollAreaWidgetContents.sizePolicy().hasHeightForWidth())
self.scrollAreaWidgetContents.setSizePolicy(sizePolicy)
self.scrollAreaWidgetContents.setMinimumSize(QtCore.QSize(0, 0))
self.scrollAreaWidgetContents.setObjectName(_fromUtf8("scrollAreaWidgetContents"))
self.nodeListLayout = QtGui.QVBoxLayout(self.scrollAreaWidgetContents)
self.nodeListLayout.setObjectName(_fromUtf8("nodeListLayout"))
self.scrollArea.setWidget(self.scrollAreaWidgetContents)
self.vboxlayout1.addWidget(self.scrollArea)
spacerItem1 = QtGui.QSpacerItem(20, 521, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self.vboxlayout1.addItem(spacerItem1)
self.verticalLayout.addWidget(self.splitter_2)
self.retranslateUi(Form)
QtCore.QMetaObject.connectSlotsByName(Form)
def retranslateUi(self, Form):
Form.setWindowTitle(QtGui.QApplication.translate("Form", "Simulation Display", None, QtGui.QApplication.UnicodeUTF8))
self.label.setText(QtGui.QApplication.translate("Form", "Geographical View", None, QtGui.QApplication.UnicodeUTF8))
self.label_2.setText(QtGui.QApplication.translate("Form", "Time Series", None, QtGui.QApplication.UnicodeUTF8))
self.showSumBox.setText(QtGui.QApplication.translate("Form", "Show global series", None, QtGui.QApplication.UnicodeUTF8))
self.pushButton.setText(QtGui.QApplication.translate("Form", "Replay", None, QtGui.QApplication.UnicodeUTF8))
self.pushButton_2.setText(QtGui.QApplication.translate("Form", "Stop", None, QtGui.QApplication.UnicodeUTF8))
self.scrollArea.setToolTip(QtGui.QApplication.translate("Form", "Check Nodes to plot their time-series", None, QtGui.QApplication.UnicodeUTF8))
from PyQt4 .Qwt5 import QwtPlot
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
Form = QtGui.QWidget()
ui = Ui_Form()
ui.setupUi(Form)
Form.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/Ui_display.py.bak 0000664 0000000 0000000 00000017102 12720633740 020273 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/fccoelho/Documents/Projects_software/EpigrassQt4/Epigrass/display.ui'
#
# Created: Sun Sep 18 08:59:10 2011
# by: PyQt4 UI code generator 4.8.3
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
try:
_fromUtf8 = QtCore.QString.fromUtf8
except AttributeError:
_fromUtf8 = lambda s: s
class Ui_Form(object):
def setupUi(self, Form):
Form.setObjectName(_fromUtf8("Form"))
Form.resize(820, 739)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(Form.sizePolicy().hasHeightForWidth())
Form.setSizePolicy(sizePolicy)
Form.setMinimumSize(QtCore.QSize(100, 600))
self.verticalLayout = QtGui.QVBoxLayout(Form)
self.verticalLayout.setObjectName(_fromUtf8("verticalLayout"))
self.label = QtGui.QLabel(Form)
self.label.setObjectName(_fromUtf8("label"))
self.verticalLayout.addWidget(self.label)
self.splitter_2 = QtGui.QSplitter(Form)
self.splitter_2.setOrientation(QtCore.Qt.Horizontal)
self.splitter_2.setObjectName(_fromUtf8("splitter_2"))
self.splitter = QtGui.QSplitter(self.splitter_2)
self.splitter.setOrientation(QtCore.Qt.Vertical)
self.splitter.setObjectName(_fromUtf8("splitter"))
self.mapView = QtGui.QGraphicsView(self.splitter)
self.mapView.setProperty(_fromUtf8("cursor"), QtCore.Qt.CrossCursor)
self.mapView.setToolTip(_fromUtf8(""))
self.mapView.setAutoFillBackground(True)
self.mapView.setObjectName(_fromUtf8("mapView"))
self.layoutWidget = QtGui.QWidget(self.splitter)
self.layoutWidget.setObjectName(_fromUtf8("layoutWidget"))
self.vboxlayout = QtGui.QVBoxLayout(self.layoutWidget)
self.vboxlayout.setMargin(0)
self.vboxlayout.setObjectName(_fromUtf8("vboxlayout"))
self.horizontalSlider = QtGui.QSlider(self.layoutWidget)
self.horizontalSlider.setOrientation(QtCore.Qt.Horizontal)
self.horizontalSlider.setTickPosition(QtGui.QSlider.TicksBelow)
self.horizontalSlider.setTickInterval(0)
self.horizontalSlider.setObjectName(_fromUtf8("horizontalSlider"))
self.vboxlayout.addWidget(self.horizontalSlider)
self.hboxlayout = QtGui.QHBoxLayout()
self.hboxlayout.setObjectName(_fromUtf8("hboxlayout"))
self.label_2 = QtGui.QLabel(self.layoutWidget)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Fixed, QtGui.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.label_2.sizePolicy().hasHeightForWidth())
self.label_2.setSizePolicy(sizePolicy)
self.label_2.setObjectName(_fromUtf8("label_2"))
self.hboxlayout.addWidget(self.label_2)
spacerItem = QtGui.QSpacerItem(461, 23, QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Minimum)
self.hboxlayout.addItem(spacerItem)
self.lcdNumber = QtGui.QLCDNumber(self.layoutWidget)
self.lcdNumber.setObjectName(_fromUtf8("lcdNumber"))
self.hboxlayout.addWidget(self.lcdNumber)
self.vboxlayout.addLayout(self.hboxlayout)
self.qwtPlot = QwtPlot(self.layoutWidget)
self.qwtPlot.setObjectName(_fromUtf8("qwtPlot"))
self.vboxlayout.addWidget(self.qwtPlot)
self.showSumBox = QtGui.QCheckBox(self.layoutWidget)
self.showSumBox.setChecked(True)
self.showSumBox.setObjectName(_fromUtf8("showSumBox"))
self.vboxlayout.addWidget(self.showSumBox)
self.layoutWidget1 = QtGui.QWidget(self.splitter_2)
self.layoutWidget1.setObjectName(_fromUtf8("layoutWidget1"))
self.vboxlayout1 = QtGui.QVBoxLayout(self.layoutWidget1)
self.vboxlayout1.setSizeConstraint(QtGui.QLayout.SetDefaultConstraint)
self.vboxlayout1.setMargin(0)
self.vboxlayout1.setObjectName(_fromUtf8("vboxlayout1"))
self.pushButton = QtGui.QPushButton(self.layoutWidget1)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Fixed, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.pushButton.sizePolicy().hasHeightForWidth())
self.pushButton.setSizePolicy(sizePolicy)
self.pushButton.setObjectName(_fromUtf8("pushButton"))
self.vboxlayout1.addWidget(self.pushButton)
self.pushButton_2 = QtGui.QPushButton(self.layoutWidget1)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Fixed, QtGui.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.pushButton_2.sizePolicy().hasHeightForWidth())
self.pushButton_2.setSizePolicy(sizePolicy)
self.pushButton_2.setObjectName(_fromUtf8("pushButton_2"))
self.vboxlayout1.addWidget(self.pushButton_2)
self.scrollArea = QtGui.QScrollArea(self.layoutWidget1)
self.scrollArea.setMinimumSize(QtCore.QSize(0, 400))
self.scrollArea.setWidgetResizable(True)
self.scrollArea.setObjectName(_fromUtf8("scrollArea"))
self.scrollAreaWidgetContents = QtGui.QWidget()
self.scrollAreaWidgetContents.setGeometry(QtCore.QRect(0, 0, 81, 394))
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Expanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.scrollAreaWidgetContents.sizePolicy().hasHeightForWidth())
self.scrollAreaWidgetContents.setSizePolicy(sizePolicy)
self.scrollAreaWidgetContents.setMinimumSize(QtCore.QSize(0, 0))
self.scrollAreaWidgetContents.setObjectName(_fromUtf8("scrollAreaWidgetContents"))
self.nodeListLayout = QtGui.QVBoxLayout(self.scrollAreaWidgetContents)
self.nodeListLayout.setObjectName(_fromUtf8("nodeListLayout"))
self.scrollArea.setWidget(self.scrollAreaWidgetContents)
self.vboxlayout1.addWidget(self.scrollArea)
spacerItem1 = QtGui.QSpacerItem(20, 521, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self.vboxlayout1.addItem(spacerItem1)
self.verticalLayout.addWidget(self.splitter_2)
self.retranslateUi(Form)
QtCore.QMetaObject.connectSlotsByName(Form)
def retranslateUi(self, Form):
Form.setWindowTitle(QtGui.QApplication.translate("Form", "Simulation Display", None, QtGui.QApplication.UnicodeUTF8))
self.label.setText(QtGui.QApplication.translate("Form", "Geographical View", None, QtGui.QApplication.UnicodeUTF8))
self.label_2.setText(QtGui.QApplication.translate("Form", "Time Series", None, QtGui.QApplication.UnicodeUTF8))
self.showSumBox.setText(QtGui.QApplication.translate("Form", "Show global series", None, QtGui.QApplication.UnicodeUTF8))
self.pushButton.setText(QtGui.QApplication.translate("Form", "Replay", None, QtGui.QApplication.UnicodeUTF8))
self.pushButton_2.setText(QtGui.QApplication.translate("Form", "Stop", None, QtGui.QApplication.UnicodeUTF8))
self.scrollArea.setToolTip(QtGui.QApplication.translate("Form", "Check Nodes to plot their time-series", None, QtGui.QApplication.UnicodeUTF8))
from PyQt4 .Qwt5 import QwtPlot
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
Form = QtGui.QWidget()
ui = Ui_Form()
ui.setupUi(Form)
Form.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/Ui_epgeditor.py 0000664 0000000 0000000 00000024765 12772733376 020106 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/flavio/Documents/Projetos/Epigrass/Epigrass-devel-qt4/epgeditor.ui'
#
# Created: Fri Jul 11 17:40:29 2008
# by: PyQt4 UI code generator 4.3.3
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
class Ui_MainWindow(object):
def setupUi(self, MainWindow):
MainWindow.setObjectName("MainWindow")
MainWindow.resize(QtCore.QSize(QtCore.QRect(0,0,505,732).size()).expandedTo(MainWindow.minimumSizeHint()))
MainWindow.setWindowIcon(QtGui.QIcon(":/egicon.png"))
self.centralwidget = QtGui.QWidget(MainWindow)
self.centralwidget.setGeometry(QtCore.QRect(0,31,505,673))
self.centralwidget.setObjectName("centralwidget")
self.vboxlayout = QtGui.QVBoxLayout(self.centralwidget)
self.vboxlayout.setObjectName("vboxlayout")
self.tabWidget = QtGui.QTabWidget(self.centralwidget)
self.tabWidget.setObjectName("tabWidget")
self.tab = QtGui.QWidget()
self.tab.setGeometry(QtCore.QRect(0,0,485,621))
self.tab.setObjectName("tab")
self.vboxlayout1 = QtGui.QVBoxLayout(self.tab)
self.vboxlayout1.setObjectName("vboxlayout1")
self.treeWidget = QtGui.QTreeWidget(self.tab)
self.treeWidget.setMouseTracking(True)
self.treeWidget.setAlternatingRowColors(True)
self.treeWidget.setSortingEnabled(True)
self.treeWidget.setAnimated(True)
self.treeWidget.setWordWrap(True)
self.treeWidget.setColumnCount(3)
self.treeWidget.setObjectName("treeWidget")
self.vboxlayout1.addWidget(self.treeWidget)
self.hboxlayout = QtGui.QHBoxLayout()
self.hboxlayout.setObjectName("hboxlayout")
self.addVButton = QtGui.QPushButton(self.tab)
self.addVButton.setObjectName("addVButton")
self.hboxlayout.addWidget(self.addVButton)
self.exitButton = QtGui.QPushButton(self.tab)
self.exitButton.setObjectName("exitButton")
self.hboxlayout.addWidget(self.exitButton)
self.vboxlayout1.addLayout(self.hboxlayout)
self.tabWidget.addTab(self.tab,"")
self.tab_2 = QtGui.QWidget()
self.tab_2.setGeometry(QtCore.QRect(0,0,485,621))
self.tab_2.setObjectName("tab_2")
self.vboxlayout2 = QtGui.QVBoxLayout(self.tab_2)
self.vboxlayout2.setObjectName("vboxlayout2")
self.epgView = QtGui.QTextBrowser(self.tab_2)
self.epgView.setObjectName("epgView")
self.vboxlayout2.addWidget(self.epgView)
self.tabWidget.addTab(self.tab_2,"")
self.help_tab = QtGui.QWidget()
self.help_tab.setGeometry(QtCore.QRect(0,0,485,621))
self.help_tab.setObjectName("help_tab")
self.vboxlayout3 = QtGui.QVBoxLayout(self.help_tab)
self.vboxlayout3.setObjectName("vboxlayout3")
self.helpBrowser = QtGui.QTextBrowser(self.help_tab)
# self.helpBrowser.setSource(QtCore.QUrl("file:///"))
self.helpBrowser.setObjectName("helpBrowser")
self.vboxlayout3.addWidget(self.helpBrowser)
self.tabWidget.addTab(self.help_tab,"")
self.vboxlayout.addWidget(self.tabWidget)
MainWindow.setCentralWidget(self.centralwidget)
self.menubar = QtGui.QMenuBar(MainWindow)
self.menubar.setGeometry(QtCore.QRect(0,0,505,31))
self.menubar.setObjectName("menubar")
self.menuFile = QtGui.QMenu(self.menubar)
self.menuFile.setObjectName("menuFile")
self.menu_Help = QtGui.QMenu(self.menubar)
self.menu_Help.setObjectName("menu_Help")
MainWindow.setMenuBar(self.menubar)
self.statusbar = QtGui.QStatusBar(MainWindow)
self.statusbar.setGeometry(QtCore.QRect(0,704,505,28))
self.statusbar.setObjectName("statusbar")
MainWindow.setStatusBar(self.statusbar)
self.action_Help = QtGui.QAction(MainWindow)
self.action_Help.setObjectName("action_Help")
self.action_About = QtGui.QAction(MainWindow)
self.action_About.setObjectName("action_About")
self.actionAbout_Epigrass = QtGui.QAction(MainWindow)
self.actionAbout_Epigrass.setObjectName("actionAbout_Epigrass")
self.actionAuto_Refresh = QtGui.QAction(MainWindow)
self.actionAuto_Refresh.setCheckable(True)
self.actionAuto_Refresh.setObjectName("actionAuto_Refresh")
self.action_Open_epg_File = QtGui.QAction(MainWindow)
self.action_Open_epg_File.setObjectName("action_Open_epg_File")
self.action_Save = QtGui.QAction(MainWindow)
self.action_Save.setObjectName("action_Save")
self.actionE_xit = QtGui.QAction(MainWindow)
self.actionE_xit.setObjectName("actionE_xit")
self.action_Refresh = QtGui.QAction(MainWindow)
self.action_Refresh.setObjectName("action_Refresh")
self.action_New = QtGui.QAction(MainWindow)
self.action_New.setObjectName("action_New")
self.menuFile.addAction(self.action_New)
self.menuFile.addAction(self.action_Open_epg_File)
self.menuFile.addAction(self.action_Save)
self.menuFile.addSeparator()
self.menuFile.addAction(self.actionE_xit)
self.menu_Help.addAction(self.action_Help)
self.menu_Help.addAction(self.action_About)
self.menu_Help.addSeparator()
self.menu_Help.addAction(self.actionAbout_Epigrass)
self.menubar.addAction(self.menuFile.menuAction())
self.menubar.addAction(self.menu_Help.menuAction())
self.retranslateUi(MainWindow)
self.tabWidget.setCurrentIndex(2)
QtCore.QMetaObject.connectSlotsByName(MainWindow)
def retranslateUi(self, MainWindow):
MainWindow.setWindowTitle(QtGui.QApplication.translate("MainWindow", ".EPG Editor", None, QtGui.QApplication.UnicodeUTF8))
self.treeWidget.headerItem().setText(0,QtGui.QApplication.translate("MainWindow", "Variable", None, QtGui.QApplication.UnicodeUTF8))
self.treeWidget.headerItem().setText(1,QtGui.QApplication.translate("MainWindow", "Value", None, QtGui.QApplication.UnicodeUTF8))
self.treeWidget.headerItem().setText(2,QtGui.QApplication.translate("MainWindow", "Description", None, QtGui.QApplication.UnicodeUTF8))
self.addVButton.setToolTip(QtGui.QApplication.translate("MainWindow", "Save file
", None, QtGui.QApplication.UnicodeUTF8))
self.addVButton.setText(QtGui.QApplication.translate("MainWindow", "Add variable", None, QtGui.QApplication.UnicodeUTF8))
self.exitButton.setToolTip(QtGui.QApplication.translate("MainWindow", "Leave the editor.
", None, QtGui.QApplication.UnicodeUTF8))
self.exitButton.setText(QtGui.QApplication.translate("MainWindow", "Exit", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab), QtGui.QApplication.translate("MainWindow", "Editor", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab_2), QtGui.QApplication.translate("MainWindow", "Viewer", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.help_tab), QtGui.QApplication.translate("MainWindow", "Help", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabToolTip(self.tabWidget.indexOf(self.help_tab),QtGui.QApplication.translate("MainWindow", "Usage help", None, QtGui.QApplication.UnicodeUTF8))
self.menuFile.setTitle(QtGui.QApplication.translate("MainWindow", "File", None, QtGui.QApplication.UnicodeUTF8))
self.menu_Help.setTitle(QtGui.QApplication.translate("MainWindow", "&Help", None, QtGui.QApplication.UnicodeUTF8))
self.action_Help.setText(QtGui.QApplication.translate("MainWindow", "&Help", None, QtGui.QApplication.UnicodeUTF8))
self.action_Help.setShortcut(QtGui.QApplication.translate("MainWindow", "F1", None, QtGui.QApplication.UnicodeUTF8))
self.action_About.setText(QtGui.QApplication.translate("MainWindow", "&About", None, QtGui.QApplication.UnicodeUTF8))
self.actionAbout_Epigrass.setText(QtGui.QApplication.translate("MainWindow", "About &Epigrass", None, QtGui.QApplication.UnicodeUTF8))
self.actionAuto_Refresh.setText(QtGui.QApplication.translate("MainWindow", "Auto-&Refresh", None, QtGui.QApplication.UnicodeUTF8))
self.action_Open_epg_File.setText(QtGui.QApplication.translate("MainWindow", "&Open .epg File", None, QtGui.QApplication.UnicodeUTF8))
self.action_Open_epg_File.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+O", None, QtGui.QApplication.UnicodeUTF8))
self.action_Save.setText(QtGui.QApplication.translate("MainWindow", "&Save", None, QtGui.QApplication.UnicodeUTF8))
self.action_Save.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+S", None, QtGui.QApplication.UnicodeUTF8))
self.actionE_xit.setText(QtGui.QApplication.translate("MainWindow", "E&xit", None, QtGui.QApplication.UnicodeUTF8))
self.actionE_xit.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+X", None, QtGui.QApplication.UnicodeUTF8))
self.action_Refresh.setText(QtGui.QApplication.translate("MainWindow", "&Refresh", None, QtGui.QApplication.UnicodeUTF8))
self.action_Refresh.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+R", None, QtGui.QApplication.UnicodeUTF8))
self.action_New.setText(QtGui.QApplication.translate("MainWindow", "&New", None, QtGui.QApplication.UnicodeUTF8))
self.action_New.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+N", None, QtGui.QApplication.UnicodeUTF8))
import epigrass_rc
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
MainWindow = QtGui.QMainWindow()
ui = Ui_MainWindow()
ui.setupUi(MainWindow)
MainWindow.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/Ui_epgeditor.py.bak 0000664 0000000 0000000 00000024765 12720633740 020625 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/flavio/Documents/Projetos/Epigrass/Epigrass-devel-qt4/epgeditor.ui'
#
# Created: Fri Jul 11 17:40:29 2008
# by: PyQt4 UI code generator 4.3.3
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
class Ui_MainWindow(object):
def setupUi(self, MainWindow):
MainWindow.setObjectName("MainWindow")
MainWindow.resize(QtCore.QSize(QtCore.QRect(0,0,505,732).size()).expandedTo(MainWindow.minimumSizeHint()))
MainWindow.setWindowIcon(QtGui.QIcon(":/egicon.png"))
self.centralwidget = QtGui.QWidget(MainWindow)
self.centralwidget.setGeometry(QtCore.QRect(0,31,505,673))
self.centralwidget.setObjectName("centralwidget")
self.vboxlayout = QtGui.QVBoxLayout(self.centralwidget)
self.vboxlayout.setObjectName("vboxlayout")
self.tabWidget = QtGui.QTabWidget(self.centralwidget)
self.tabWidget.setObjectName("tabWidget")
self.tab = QtGui.QWidget()
self.tab.setGeometry(QtCore.QRect(0,0,485,621))
self.tab.setObjectName("tab")
self.vboxlayout1 = QtGui.QVBoxLayout(self.tab)
self.vboxlayout1.setObjectName("vboxlayout1")
self.treeWidget = QtGui.QTreeWidget(self.tab)
self.treeWidget.setMouseTracking(True)
self.treeWidget.setAlternatingRowColors(True)
self.treeWidget.setSortingEnabled(True)
self.treeWidget.setAnimated(True)
self.treeWidget.setWordWrap(True)
self.treeWidget.setColumnCount(3)
self.treeWidget.setObjectName("treeWidget")
self.vboxlayout1.addWidget(self.treeWidget)
self.hboxlayout = QtGui.QHBoxLayout()
self.hboxlayout.setObjectName("hboxlayout")
self.addVButton = QtGui.QPushButton(self.tab)
self.addVButton.setObjectName("addVButton")
self.hboxlayout.addWidget(self.addVButton)
self.exitButton = QtGui.QPushButton(self.tab)
self.exitButton.setObjectName("exitButton")
self.hboxlayout.addWidget(self.exitButton)
self.vboxlayout1.addLayout(self.hboxlayout)
self.tabWidget.addTab(self.tab,"")
self.tab_2 = QtGui.QWidget()
self.tab_2.setGeometry(QtCore.QRect(0,0,485,621))
self.tab_2.setObjectName("tab_2")
self.vboxlayout2 = QtGui.QVBoxLayout(self.tab_2)
self.vboxlayout2.setObjectName("vboxlayout2")
self.epgView = QtGui.QTextBrowser(self.tab_2)
self.epgView.setObjectName("epgView")
self.vboxlayout2.addWidget(self.epgView)
self.tabWidget.addTab(self.tab_2,"")
self.help_tab = QtGui.QWidget()
self.help_tab.setGeometry(QtCore.QRect(0,0,485,621))
self.help_tab.setObjectName("help_tab")
self.vboxlayout3 = QtGui.QVBoxLayout(self.help_tab)
self.vboxlayout3.setObjectName("vboxlayout3")
self.helpBrowser = QtGui.QTextBrowser(self.help_tab)
# self.helpBrowser.setSource(QtCore.QUrl("file:///"))
self.helpBrowser.setObjectName("helpBrowser")
self.vboxlayout3.addWidget(self.helpBrowser)
self.tabWidget.addTab(self.help_tab,"")
self.vboxlayout.addWidget(self.tabWidget)
MainWindow.setCentralWidget(self.centralwidget)
self.menubar = QtGui.QMenuBar(MainWindow)
self.menubar.setGeometry(QtCore.QRect(0,0,505,31))
self.menubar.setObjectName("menubar")
self.menuFile = QtGui.QMenu(self.menubar)
self.menuFile.setObjectName("menuFile")
self.menu_Help = QtGui.QMenu(self.menubar)
self.menu_Help.setObjectName("menu_Help")
MainWindow.setMenuBar(self.menubar)
self.statusbar = QtGui.QStatusBar(MainWindow)
self.statusbar.setGeometry(QtCore.QRect(0,704,505,28))
self.statusbar.setObjectName("statusbar")
MainWindow.setStatusBar(self.statusbar)
self.action_Help = QtGui.QAction(MainWindow)
self.action_Help.setObjectName("action_Help")
self.action_About = QtGui.QAction(MainWindow)
self.action_About.setObjectName("action_About")
self.actionAbout_Epigrass = QtGui.QAction(MainWindow)
self.actionAbout_Epigrass.setObjectName("actionAbout_Epigrass")
self.actionAuto_Refresh = QtGui.QAction(MainWindow)
self.actionAuto_Refresh.setCheckable(True)
self.actionAuto_Refresh.setObjectName("actionAuto_Refresh")
self.action_Open_epg_File = QtGui.QAction(MainWindow)
self.action_Open_epg_File.setObjectName("action_Open_epg_File")
self.action_Save = QtGui.QAction(MainWindow)
self.action_Save.setObjectName("action_Save")
self.actionE_xit = QtGui.QAction(MainWindow)
self.actionE_xit.setObjectName("actionE_xit")
self.action_Refresh = QtGui.QAction(MainWindow)
self.action_Refresh.setObjectName("action_Refresh")
self.action_New = QtGui.QAction(MainWindow)
self.action_New.setObjectName("action_New")
self.menuFile.addAction(self.action_New)
self.menuFile.addAction(self.action_Open_epg_File)
self.menuFile.addAction(self.action_Save)
self.menuFile.addSeparator()
self.menuFile.addAction(self.actionE_xit)
self.menu_Help.addAction(self.action_Help)
self.menu_Help.addAction(self.action_About)
self.menu_Help.addSeparator()
self.menu_Help.addAction(self.actionAbout_Epigrass)
self.menubar.addAction(self.menuFile.menuAction())
self.menubar.addAction(self.menu_Help.menuAction())
self.retranslateUi(MainWindow)
self.tabWidget.setCurrentIndex(2)
QtCore.QMetaObject.connectSlotsByName(MainWindow)
def retranslateUi(self, MainWindow):
MainWindow.setWindowTitle(QtGui.QApplication.translate("MainWindow", ".EPG Editor", None, QtGui.QApplication.UnicodeUTF8))
self.treeWidget.headerItem().setText(0,QtGui.QApplication.translate("MainWindow", "Variable", None, QtGui.QApplication.UnicodeUTF8))
self.treeWidget.headerItem().setText(1,QtGui.QApplication.translate("MainWindow", "Value", None, QtGui.QApplication.UnicodeUTF8))
self.treeWidget.headerItem().setText(2,QtGui.QApplication.translate("MainWindow", "Description", None, QtGui.QApplication.UnicodeUTF8))
self.addVButton.setToolTip(QtGui.QApplication.translate("MainWindow", "Save file
", None, QtGui.QApplication.UnicodeUTF8))
self.addVButton.setText(QtGui.QApplication.translate("MainWindow", "Add variable", None, QtGui.QApplication.UnicodeUTF8))
self.exitButton.setToolTip(QtGui.QApplication.translate("MainWindow", "Leave the editor.
", None, QtGui.QApplication.UnicodeUTF8))
self.exitButton.setText(QtGui.QApplication.translate("MainWindow", "Exit", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab), QtGui.QApplication.translate("MainWindow", "Editor", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab_2), QtGui.QApplication.translate("MainWindow", "Viewer", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabText(self.tabWidget.indexOf(self.help_tab), QtGui.QApplication.translate("MainWindow", "Help", None, QtGui.QApplication.UnicodeUTF8))
self.tabWidget.setTabToolTip(self.tabWidget.indexOf(self.help_tab),QtGui.QApplication.translate("MainWindow", "Usage help", None, QtGui.QApplication.UnicodeUTF8))
self.menuFile.setTitle(QtGui.QApplication.translate("MainWindow", "File", None, QtGui.QApplication.UnicodeUTF8))
self.menu_Help.setTitle(QtGui.QApplication.translate("MainWindow", "&Help", None, QtGui.QApplication.UnicodeUTF8))
self.action_Help.setText(QtGui.QApplication.translate("MainWindow", "&Help", None, QtGui.QApplication.UnicodeUTF8))
self.action_Help.setShortcut(QtGui.QApplication.translate("MainWindow", "F1", None, QtGui.QApplication.UnicodeUTF8))
self.action_About.setText(QtGui.QApplication.translate("MainWindow", "&About", None, QtGui.QApplication.UnicodeUTF8))
self.actionAbout_Epigrass.setText(QtGui.QApplication.translate("MainWindow", "About &Epigrass", None, QtGui.QApplication.UnicodeUTF8))
self.actionAuto_Refresh.setText(QtGui.QApplication.translate("MainWindow", "Auto-&Refresh", None, QtGui.QApplication.UnicodeUTF8))
self.action_Open_epg_File.setText(QtGui.QApplication.translate("MainWindow", "&Open .epg File", None, QtGui.QApplication.UnicodeUTF8))
self.action_Open_epg_File.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+O", None, QtGui.QApplication.UnicodeUTF8))
self.action_Save.setText(QtGui.QApplication.translate("MainWindow", "&Save", None, QtGui.QApplication.UnicodeUTF8))
self.action_Save.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+S", None, QtGui.QApplication.UnicodeUTF8))
self.actionE_xit.setText(QtGui.QApplication.translate("MainWindow", "E&xit", None, QtGui.QApplication.UnicodeUTF8))
self.actionE_xit.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+X", None, QtGui.QApplication.UnicodeUTF8))
self.action_Refresh.setText(QtGui.QApplication.translate("MainWindow", "&Refresh", None, QtGui.QApplication.UnicodeUTF8))
self.action_Refresh.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+R", None, QtGui.QApplication.UnicodeUTF8))
self.action_New.setText(QtGui.QApplication.translate("MainWindow", "&New", None, QtGui.QApplication.UnicodeUTF8))
self.action_New.setShortcut(QtGui.QApplication.translate("MainWindow", "Ctrl+N", None, QtGui.QApplication.UnicodeUTF8))
import epigrass_rc
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
MainWindow = QtGui.QMainWindow()
ui = Ui_MainWindow()
ui.setupUi(MainWindow)
MainWindow.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/Ui_neteditor.py 0000664 0000000 0000000 00000031123 12772733376 020103 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/fccoelho/Documents/Projects_software/EpigrassQt4/Epigrass/neteditor.ui'
#
# Created: Sun Sep 18 17:29:15 2011
# by: PyQt4 UI code generator 4.8.3
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
try:
_fromUtf8 = QtCore.QString.fromUtf8
except AttributeError:
_fromUtf8 = lambda s: s
class Ui_MainWindow(object):
def setupUi(self, MainWindow):
MainWindow.setObjectName(_fromUtf8("MainWindow"))
MainWindow.resize(759, 588)
icon = QtGui.QIcon()
icon.addPixmap(QtGui.QPixmap(_fromUtf8(":/egicon.png")), QtGui.QIcon.Normal, QtGui.QIcon.Off)
MainWindow.setWindowIcon(icon)
MainWindow.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.centralWidget = QtGui.QWidget(MainWindow)
self.centralWidget.setObjectName(_fromUtf8("centralWidget"))
self.verticalLayout = QtGui.QVBoxLayout(self.centralWidget)
self.verticalLayout.setObjectName(_fromUtf8("verticalLayout"))
self.splitter = QtGui.QSplitter(self.centralWidget)
self.splitter.setOrientation(QtCore.Qt.Vertical)
self.splitter.setObjectName(_fromUtf8("splitter"))
self.graphicsView = QtGui.QGraphicsView(self.splitter)
self.graphicsView.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.graphicsView.setRenderHints(QtGui.QPainter.Antialiasing|QtGui.QPainter.TextAntialiasing)
self.graphicsView.setCacheMode(QtGui.QGraphicsView.CacheBackground)
self.graphicsView.setTransformationAnchor(QtGui.QGraphicsView.AnchorUnderMouse)
self.graphicsView.setViewportUpdateMode(QtGui.QGraphicsView.BoundingRectViewportUpdate)
self.graphicsView.setObjectName(_fromUtf8("graphicsView"))
self.dataPanel = QtGui.QTabWidget(self.splitter)
self.dataPanel.setObjectName(_fromUtf8("dataPanel"))
self.Nodes = QtGui.QWidget()
self.Nodes.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.Nodes.setObjectName(_fromUtf8("Nodes"))
self.verticalLayout_2 = QtGui.QVBoxLayout(self.Nodes)
self.verticalLayout_2.setObjectName(_fromUtf8("verticalLayout_2"))
self.nodeTable = QtGui.QTableWidget(self.Nodes)
self.nodeTable.setAlternatingRowColors(True)
self.nodeTable.setObjectName(_fromUtf8("nodeTable"))
self.nodeTable.setColumnCount(0)
self.nodeTable.setRowCount(0)
self.verticalLayout_2.addWidget(self.nodeTable)
self.dataPanel.addTab(self.Nodes, _fromUtf8(""))
self.Edges = QtGui.QWidget()
self.Edges.setObjectName(_fromUtf8("Edges"))
self.verticalLayout_3 = QtGui.QVBoxLayout(self.Edges)
self.verticalLayout_3.setObjectName(_fromUtf8("verticalLayout_3"))
self.edgeTable = QtGui.QTableWidget(self.Edges)
self.edgeTable.setAlternatingRowColors(True)
self.edgeTable.setObjectName(_fromUtf8("edgeTable"))
self.edgeTable.setColumnCount(0)
self.edgeTable.setRowCount(0)
self.verticalLayout_3.addWidget(self.edgeTable)
self.dataPanel.addTab(self.Edges, _fromUtf8(""))
self.verticalLayout.addWidget(self.splitter)
MainWindow.setCentralWidget(self.centralWidget)
self.menuBar = QtGui.QMenuBar(MainWindow)
self.menuBar.setGeometry(QtCore.QRect(0, 0, 759, 24))
self.menuBar.setObjectName(_fromUtf8("menuBar"))
self.menuFile = QtGui.QMenu(self.menuBar)
self.menuFile.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.menuFile.setObjectName(_fromUtf8("menuFile"))
self.menu_Export = QtGui.QMenu(self.menuFile)
self.menu_Export.setObjectName(_fromUtf8("menu_Export"))
self.menu_View = QtGui.QMenu(self.menuBar)
self.menu_View.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.menu_View.setObjectName(_fromUtf8("menu_View"))
self.menuAnalyze = QtGui.QMenu(self.menuBar)
self.menuAnalyze.setObjectName(_fromUtf8("menuAnalyze"))
self.menu_Debug = QtGui.QMenu(self.menuAnalyze)
self.menu_Debug.setObjectName(_fromUtf8("menu_Debug"))
MainWindow.setMenuBar(self.menuBar)
self.statusBar = QtGui.QStatusBar(MainWindow)
self.statusBar.setObjectName(_fromUtf8("statusBar"))
MainWindow.setStatusBar(self.statusBar)
self.toolBar = QtGui.QToolBar(MainWindow)
self.toolBar.setObjectName(_fromUtf8("toolBar"))
MainWindow.addToolBar(QtCore.Qt.TopToolBarArea, self.toolBar)
self.actionOpen_edges_file = QtGui.QAction(MainWindow)
icon1 = QtGui.QIcon()
icon1.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/openedges.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.actionOpen_edges_file.setIcon(icon1)
self.actionOpen_edges_file.setObjectName(_fromUtf8("actionOpen_edges_file"))
self.actionOpen_Shapefile = QtGui.QAction(MainWindow)
icon2 = QtGui.QIcon()
icon2.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/openshape.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.actionOpen_Shapefile.setIcon(icon2)
self.actionOpen_Shapefile.setObjectName(_fromUtf8("actionOpen_Shapefile"))
self.action_Save = QtGui.QAction(MainWindow)
icon3 = QtGui.QIcon()
icon3.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/document-save.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.action_Save.setIcon(icon3)
self.action_Save.setObjectName(_fromUtf8("action_Save"))
self.actionSave_as = QtGui.QAction(MainWindow)
icon4 = QtGui.QIcon()
icon4.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/document-save-as.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.actionSave_as.setIcon(icon4)
self.actionSave_as.setObjectName(_fromUtf8("actionSave_as"))
self.action_Graph = QtGui.QAction(MainWindow)
icon5 = QtGui.QIcon()
icon5.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/graph.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.action_Graph.setIcon(icon5)
self.action_Graph.setObjectName(_fromUtf8("action_Graph"))
self.actionE_xit = QtGui.QAction(MainWindow)
icon6 = QtGui.QIcon()
icon6.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/application-exit.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.actionE_xit.setIcon(icon6)
self.actionE_xit.setObjectName(_fromUtf8("actionE_xit"))
self.actionStats = QtGui.QAction(MainWindow)
self.actionStats.setObjectName(_fromUtf8("actionStats"))
self.action_Close = QtGui.QAction(MainWindow)
self.action_Close.setObjectName(_fromUtf8("action_Close"))
self.actionCheck_Graph = QtGui.QAction(MainWindow)
self.actionCheck_Graph.setObjectName(_fromUtf8("actionCheck_Graph"))
self.actionDot = QtGui.QAction(MainWindow)
self.actionDot.setObjectName(_fromUtf8("actionDot"))
self.actionGML = QtGui.QAction(MainWindow)
self.actionGML.setObjectName(_fromUtf8("actionGML"))
self.actionPajek = QtGui.QAction(MainWindow)
self.actionPajek.setObjectName(_fromUtf8("actionPajek"))
self.actionYAML = QtGui.QAction(MainWindow)
self.actionYAML.setObjectName(_fromUtf8("actionYAML"))
self.menu_Export.addAction(self.actionDot)
self.menu_Export.addAction(self.actionGML)
self.menu_Export.addAction(self.actionPajek)
self.menu_Export.addAction(self.actionYAML)
self.menuFile.addAction(self.actionOpen_edges_file)
self.menuFile.addAction(self.actionOpen_Shapefile)
self.menuFile.addAction(self.action_Close)
self.menuFile.addSeparator()
self.menuFile.addAction(self.action_Save)
self.menuFile.addAction(self.actionSave_as)
self.menuFile.addAction(self.menu_Export.menuAction())
self.menuFile.addSeparator()
self.menuFile.addAction(self.actionE_xit)
self.menu_View.addAction(self.action_Graph)
self.menu_Debug.addAction(self.actionCheck_Graph)
self.menuAnalyze.addAction(self.menu_Debug.menuAction())
self.menuAnalyze.addSeparator()
self.menuAnalyze.addAction(self.actionStats)
self.menuBar.addAction(self.menuFile.menuAction())
self.menuBar.addAction(self.menu_View.menuAction())
self.menuBar.addAction(self.menuAnalyze.menuAction())
self.toolBar.addAction(self.actionOpen_edges_file)
self.toolBar.addAction(self.actionOpen_Shapefile)
self.toolBar.addAction(self.action_Save)
self.toolBar.addSeparator()
self.toolBar.addAction(self.action_Graph)
self.toolBar.addSeparator()
self.toolBar.addAction(self.actionE_xit)
self.retranslateUi(MainWindow)
self.dataPanel.setCurrentIndex(0)
QtCore.QMetaObject.connectSlotsByName(MainWindow)
def retranslateUi(self, MainWindow):
MainWindow.setWindowTitle(QtGui.QApplication.translate("MainWindow", "Network Editor", None, QtGui.QApplication.UnicodeUTF8))
self.graphicsView.setStatusTip(QtGui.QApplication.translate("MainWindow", "Map visualization window", None, QtGui.QApplication.UnicodeUTF8))
self.Nodes.setToolTip(QtGui.QApplication.translate("MainWindow", "Node set", None, QtGui.QApplication.UnicodeUTF8))
self.nodeTable.setStatusTip(QtGui.QApplication.translate("MainWindow", "Node list.", None, QtGui.QApplication.UnicodeUTF8))
self.nodeTable.setSortingEnabled(False)
self.dataPanel.setTabText(self.dataPanel.indexOf(self.Nodes), QtGui.QApplication.translate("MainWindow", "Nodes", None, QtGui.QApplication.UnicodeUTF8))
self.edgeTable.setStatusTip(QtGui.QApplication.translate("MainWindow", "List of edges", "Right-click for context menu", QtGui.QApplication.UnicodeUTF8))
self.edgeTable.setSortingEnabled(False)
self.dataPanel.setTabText(self.dataPanel.indexOf(self.Edges), QtGui.QApplication.translate("MainWindow", "Edges", None, QtGui.QApplication.UnicodeUTF8))
self.menuFile.setTitle(QtGui.QApplication.translate("MainWindow", "&File", None, QtGui.QApplication.UnicodeUTF8))
self.menu_Export.setTitle(QtGui.QApplication.translate("MainWindow", "&Export", None, QtGui.QApplication.UnicodeUTF8))
self.menu_View.setTitle(QtGui.QApplication.translate("MainWindow", "&View", None, QtGui.QApplication.UnicodeUTF8))
self.menuAnalyze.setTitle(QtGui.QApplication.translate("MainWindow", "&Analyze", None, QtGui.QApplication.UnicodeUTF8))
self.menu_Debug.setTitle(QtGui.QApplication.translate("MainWindow", "&Debug", None, QtGui.QApplication.UnicodeUTF8))
self.toolBar.setWindowTitle(QtGui.QApplication.translate("MainWindow", "toolBar", None, QtGui.QApplication.UnicodeUTF8))
self.actionOpen_edges_file.setText(QtGui.QApplication.translate("MainWindow", "Open &edges file", None, QtGui.QApplication.UnicodeUTF8))
self.actionOpen_Shapefile.setText(QtGui.QApplication.translate("MainWindow", "Open &Shapefile", None, QtGui.QApplication.UnicodeUTF8))
self.action_Save.setText(QtGui.QApplication.translate("MainWindow", "&Save", None, QtGui.QApplication.UnicodeUTF8))
self.actionSave_as.setText(QtGui.QApplication.translate("MainWindow", "Save &as", None, QtGui.QApplication.UnicodeUTF8))
self.action_Graph.setText(QtGui.QApplication.translate("MainWindow", "&Graph", None, QtGui.QApplication.UnicodeUTF8))
self.actionE_xit.setText(QtGui.QApplication.translate("MainWindow", "E&xit", None, QtGui.QApplication.UnicodeUTF8))
self.actionStats.setText(QtGui.QApplication.translate("MainWindow", "Stats", None, QtGui.QApplication.UnicodeUTF8))
self.action_Close.setText(QtGui.QApplication.translate("MainWindow", "&Close", None, QtGui.QApplication.UnicodeUTF8))
self.actionCheck_Graph.setText(QtGui.QApplication.translate("MainWindow", "Check Graph", None, QtGui.QApplication.UnicodeUTF8))
self.actionDot.setText(QtGui.QApplication.translate("MainWindow", "Dot", None, QtGui.QApplication.UnicodeUTF8))
self.actionGML.setText(QtGui.QApplication.translate("MainWindow", "GML", None, QtGui.QApplication.UnicodeUTF8))
self.actionPajek.setText(QtGui.QApplication.translate("MainWindow", "Pajek", None, QtGui.QApplication.UnicodeUTF8))
self.actionYAML.setText(QtGui.QApplication.translate("MainWindow", "YAML", None, QtGui.QApplication.UnicodeUTF8))
import epigrass_rc
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
MainWindow = QtGui.QMainWindow()
ui = Ui_MainWindow()
ui.setupUi(MainWindow)
MainWindow.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/Ui_neteditor.py.bak 0000664 0000000 0000000 00000031123 12720633740 020622 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/fccoelho/Documents/Projects_software/EpigrassQt4/Epigrass/neteditor.ui'
#
# Created: Sun Sep 18 17:29:15 2011
# by: PyQt4 UI code generator 4.8.3
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
try:
_fromUtf8 = QtCore.QString.fromUtf8
except AttributeError:
_fromUtf8 = lambda s: s
class Ui_MainWindow(object):
def setupUi(self, MainWindow):
MainWindow.setObjectName(_fromUtf8("MainWindow"))
MainWindow.resize(759, 588)
icon = QtGui.QIcon()
icon.addPixmap(QtGui.QPixmap(_fromUtf8(":/egicon.png")), QtGui.QIcon.Normal, QtGui.QIcon.Off)
MainWindow.setWindowIcon(icon)
MainWindow.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.centralWidget = QtGui.QWidget(MainWindow)
self.centralWidget.setObjectName(_fromUtf8("centralWidget"))
self.verticalLayout = QtGui.QVBoxLayout(self.centralWidget)
self.verticalLayout.setObjectName(_fromUtf8("verticalLayout"))
self.splitter = QtGui.QSplitter(self.centralWidget)
self.splitter.setOrientation(QtCore.Qt.Vertical)
self.splitter.setObjectName(_fromUtf8("splitter"))
self.graphicsView = QtGui.QGraphicsView(self.splitter)
self.graphicsView.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.graphicsView.setRenderHints(QtGui.QPainter.Antialiasing|QtGui.QPainter.TextAntialiasing)
self.graphicsView.setCacheMode(QtGui.QGraphicsView.CacheBackground)
self.graphicsView.setTransformationAnchor(QtGui.QGraphicsView.AnchorUnderMouse)
self.graphicsView.setViewportUpdateMode(QtGui.QGraphicsView.BoundingRectViewportUpdate)
self.graphicsView.setObjectName(_fromUtf8("graphicsView"))
self.dataPanel = QtGui.QTabWidget(self.splitter)
self.dataPanel.setObjectName(_fromUtf8("dataPanel"))
self.Nodes = QtGui.QWidget()
self.Nodes.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.Nodes.setObjectName(_fromUtf8("Nodes"))
self.verticalLayout_2 = QtGui.QVBoxLayout(self.Nodes)
self.verticalLayout_2.setObjectName(_fromUtf8("verticalLayout_2"))
self.nodeTable = QtGui.QTableWidget(self.Nodes)
self.nodeTable.setAlternatingRowColors(True)
self.nodeTable.setObjectName(_fromUtf8("nodeTable"))
self.nodeTable.setColumnCount(0)
self.nodeTable.setRowCount(0)
self.verticalLayout_2.addWidget(self.nodeTable)
self.dataPanel.addTab(self.Nodes, _fromUtf8(""))
self.Edges = QtGui.QWidget()
self.Edges.setObjectName(_fromUtf8("Edges"))
self.verticalLayout_3 = QtGui.QVBoxLayout(self.Edges)
self.verticalLayout_3.setObjectName(_fromUtf8("verticalLayout_3"))
self.edgeTable = QtGui.QTableWidget(self.Edges)
self.edgeTable.setAlternatingRowColors(True)
self.edgeTable.setObjectName(_fromUtf8("edgeTable"))
self.edgeTable.setColumnCount(0)
self.edgeTable.setRowCount(0)
self.verticalLayout_3.addWidget(self.edgeTable)
self.dataPanel.addTab(self.Edges, _fromUtf8(""))
self.verticalLayout.addWidget(self.splitter)
MainWindow.setCentralWidget(self.centralWidget)
self.menuBar = QtGui.QMenuBar(MainWindow)
self.menuBar.setGeometry(QtCore.QRect(0, 0, 759, 24))
self.menuBar.setObjectName(_fromUtf8("menuBar"))
self.menuFile = QtGui.QMenu(self.menuBar)
self.menuFile.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.menuFile.setObjectName(_fromUtf8("menuFile"))
self.menu_Export = QtGui.QMenu(self.menuFile)
self.menu_Export.setObjectName(_fromUtf8("menu_Export"))
self.menu_View = QtGui.QMenu(self.menuBar)
self.menu_View.setLocale(QtCore.QLocale(QtCore.QLocale.English, QtCore.QLocale.UnitedStates))
self.menu_View.setObjectName(_fromUtf8("menu_View"))
self.menuAnalyze = QtGui.QMenu(self.menuBar)
self.menuAnalyze.setObjectName(_fromUtf8("menuAnalyze"))
self.menu_Debug = QtGui.QMenu(self.menuAnalyze)
self.menu_Debug.setObjectName(_fromUtf8("menu_Debug"))
MainWindow.setMenuBar(self.menuBar)
self.statusBar = QtGui.QStatusBar(MainWindow)
self.statusBar.setObjectName(_fromUtf8("statusBar"))
MainWindow.setStatusBar(self.statusBar)
self.toolBar = QtGui.QToolBar(MainWindow)
self.toolBar.setObjectName(_fromUtf8("toolBar"))
MainWindow.addToolBar(QtCore.Qt.TopToolBarArea, self.toolBar)
self.actionOpen_edges_file = QtGui.QAction(MainWindow)
icon1 = QtGui.QIcon()
icon1.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/openedges.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.actionOpen_edges_file.setIcon(icon1)
self.actionOpen_edges_file.setObjectName(_fromUtf8("actionOpen_edges_file"))
self.actionOpen_Shapefile = QtGui.QAction(MainWindow)
icon2 = QtGui.QIcon()
icon2.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/openshape.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.actionOpen_Shapefile.setIcon(icon2)
self.actionOpen_Shapefile.setObjectName(_fromUtf8("actionOpen_Shapefile"))
self.action_Save = QtGui.QAction(MainWindow)
icon3 = QtGui.QIcon()
icon3.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/document-save.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.action_Save.setIcon(icon3)
self.action_Save.setObjectName(_fromUtf8("action_Save"))
self.actionSave_as = QtGui.QAction(MainWindow)
icon4 = QtGui.QIcon()
icon4.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/document-save-as.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.actionSave_as.setIcon(icon4)
self.actionSave_as.setObjectName(_fromUtf8("actionSave_as"))
self.action_Graph = QtGui.QAction(MainWindow)
icon5 = QtGui.QIcon()
icon5.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/graph.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.action_Graph.setIcon(icon5)
self.action_Graph.setObjectName(_fromUtf8("action_Graph"))
self.actionE_xit = QtGui.QAction(MainWindow)
icon6 = QtGui.QIcon()
icon6.addPixmap(QtGui.QPixmap(_fromUtf8(":/neteditor/application-exit.png")), QtGui.QIcon.Normal, QtGui.QIcon.On)
self.actionE_xit.setIcon(icon6)
self.actionE_xit.setObjectName(_fromUtf8("actionE_xit"))
self.actionStats = QtGui.QAction(MainWindow)
self.actionStats.setObjectName(_fromUtf8("actionStats"))
self.action_Close = QtGui.QAction(MainWindow)
self.action_Close.setObjectName(_fromUtf8("action_Close"))
self.actionCheck_Graph = QtGui.QAction(MainWindow)
self.actionCheck_Graph.setObjectName(_fromUtf8("actionCheck_Graph"))
self.actionDot = QtGui.QAction(MainWindow)
self.actionDot.setObjectName(_fromUtf8("actionDot"))
self.actionGML = QtGui.QAction(MainWindow)
self.actionGML.setObjectName(_fromUtf8("actionGML"))
self.actionPajek = QtGui.QAction(MainWindow)
self.actionPajek.setObjectName(_fromUtf8("actionPajek"))
self.actionYAML = QtGui.QAction(MainWindow)
self.actionYAML.setObjectName(_fromUtf8("actionYAML"))
self.menu_Export.addAction(self.actionDot)
self.menu_Export.addAction(self.actionGML)
self.menu_Export.addAction(self.actionPajek)
self.menu_Export.addAction(self.actionYAML)
self.menuFile.addAction(self.actionOpen_edges_file)
self.menuFile.addAction(self.actionOpen_Shapefile)
self.menuFile.addAction(self.action_Close)
self.menuFile.addSeparator()
self.menuFile.addAction(self.action_Save)
self.menuFile.addAction(self.actionSave_as)
self.menuFile.addAction(self.menu_Export.menuAction())
self.menuFile.addSeparator()
self.menuFile.addAction(self.actionE_xit)
self.menu_View.addAction(self.action_Graph)
self.menu_Debug.addAction(self.actionCheck_Graph)
self.menuAnalyze.addAction(self.menu_Debug.menuAction())
self.menuAnalyze.addSeparator()
self.menuAnalyze.addAction(self.actionStats)
self.menuBar.addAction(self.menuFile.menuAction())
self.menuBar.addAction(self.menu_View.menuAction())
self.menuBar.addAction(self.menuAnalyze.menuAction())
self.toolBar.addAction(self.actionOpen_edges_file)
self.toolBar.addAction(self.actionOpen_Shapefile)
self.toolBar.addAction(self.action_Save)
self.toolBar.addSeparator()
self.toolBar.addAction(self.action_Graph)
self.toolBar.addSeparator()
self.toolBar.addAction(self.actionE_xit)
self.retranslateUi(MainWindow)
self.dataPanel.setCurrentIndex(0)
QtCore.QMetaObject.connectSlotsByName(MainWindow)
def retranslateUi(self, MainWindow):
MainWindow.setWindowTitle(QtGui.QApplication.translate("MainWindow", "Network Editor", None, QtGui.QApplication.UnicodeUTF8))
self.graphicsView.setStatusTip(QtGui.QApplication.translate("MainWindow", "Map visualization window", None, QtGui.QApplication.UnicodeUTF8))
self.Nodes.setToolTip(QtGui.QApplication.translate("MainWindow", "Node set", None, QtGui.QApplication.UnicodeUTF8))
self.nodeTable.setStatusTip(QtGui.QApplication.translate("MainWindow", "Node list.", None, QtGui.QApplication.UnicodeUTF8))
self.nodeTable.setSortingEnabled(False)
self.dataPanel.setTabText(self.dataPanel.indexOf(self.Nodes), QtGui.QApplication.translate("MainWindow", "Nodes", None, QtGui.QApplication.UnicodeUTF8))
self.edgeTable.setStatusTip(QtGui.QApplication.translate("MainWindow", "List of edges", "Right-click for context menu", QtGui.QApplication.UnicodeUTF8))
self.edgeTable.setSortingEnabled(False)
self.dataPanel.setTabText(self.dataPanel.indexOf(self.Edges), QtGui.QApplication.translate("MainWindow", "Edges", None, QtGui.QApplication.UnicodeUTF8))
self.menuFile.setTitle(QtGui.QApplication.translate("MainWindow", "&File", None, QtGui.QApplication.UnicodeUTF8))
self.menu_Export.setTitle(QtGui.QApplication.translate("MainWindow", "&Export", None, QtGui.QApplication.UnicodeUTF8))
self.menu_View.setTitle(QtGui.QApplication.translate("MainWindow", "&View", None, QtGui.QApplication.UnicodeUTF8))
self.menuAnalyze.setTitle(QtGui.QApplication.translate("MainWindow", "&Analyze", None, QtGui.QApplication.UnicodeUTF8))
self.menu_Debug.setTitle(QtGui.QApplication.translate("MainWindow", "&Debug", None, QtGui.QApplication.UnicodeUTF8))
self.toolBar.setWindowTitle(QtGui.QApplication.translate("MainWindow", "toolBar", None, QtGui.QApplication.UnicodeUTF8))
self.actionOpen_edges_file.setText(QtGui.QApplication.translate("MainWindow", "Open &edges file", None, QtGui.QApplication.UnicodeUTF8))
self.actionOpen_Shapefile.setText(QtGui.QApplication.translate("MainWindow", "Open &Shapefile", None, QtGui.QApplication.UnicodeUTF8))
self.action_Save.setText(QtGui.QApplication.translate("MainWindow", "&Save", None, QtGui.QApplication.UnicodeUTF8))
self.actionSave_as.setText(QtGui.QApplication.translate("MainWindow", "Save &as", None, QtGui.QApplication.UnicodeUTF8))
self.action_Graph.setText(QtGui.QApplication.translate("MainWindow", "&Graph", None, QtGui.QApplication.UnicodeUTF8))
self.actionE_xit.setText(QtGui.QApplication.translate("MainWindow", "E&xit", None, QtGui.QApplication.UnicodeUTF8))
self.actionStats.setText(QtGui.QApplication.translate("MainWindow", "Stats", None, QtGui.QApplication.UnicodeUTF8))
self.action_Close.setText(QtGui.QApplication.translate("MainWindow", "&Close", None, QtGui.QApplication.UnicodeUTF8))
self.actionCheck_Graph.setText(QtGui.QApplication.translate("MainWindow", "Check Graph", None, QtGui.QApplication.UnicodeUTF8))
self.actionDot.setText(QtGui.QApplication.translate("MainWindow", "Dot", None, QtGui.QApplication.UnicodeUTF8))
self.actionGML.setText(QtGui.QApplication.translate("MainWindow", "GML", None, QtGui.QApplication.UnicodeUTF8))
self.actionPajek.setText(QtGui.QApplication.translate("MainWindow", "Pajek", None, QtGui.QApplication.UnicodeUTF8))
self.actionYAML.setText(QtGui.QApplication.translate("MainWindow", "YAML", None, QtGui.QApplication.UnicodeUTF8))
import epigrass_rc
if __name__ == "__main__":
import sys
app = QtGui.QApplication(sys.argv)
MainWindow = QtGui.QMainWindow()
ui = Ui_MainWindow()
ui.setupUi(MainWindow)
MainWindow.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/__init__.py 0000664 0000000 0000000 00000000001 12720633740 017162 0 ustar root root 0000000 0000000
epigrass-2.4.7/Epigrass/__version__.py 0000664 0000000 0000000 00000000022 13006165661 017707 0 ustar root root 0000000 0000000 version = "2.4.7"
epigrass-2.4.7/Epigrass/about.py 0000664 0000000 0000000 00000061365 12772733376 016576 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/flavio/Documents/Projetos/Epigrass/Epigrass-devel/about.ui'
#
# Created: Qua Jul 11 17:35:33 2007
# by: The PyQt User Interface Compiler (pyuic) 3.17
#
# WARNING! All changes made in this file will be lost!
import sys
from qt import *
image0_data = \
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"\x49\x48\x44\x52\x00\x00\x00\x20\x00\x00\x00\x20" \
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"\x82"
class aboutDialog(QDialog):
def __init__(self,parent = None,name = None,modal = 0,fl = 0):
QDialog.__init__(self,parent,name,modal,fl)
self.image0 = QPixmap()
self.image0.loadFromData(image0_data,"PNG")
if not name:
self.setName("aboutDialog")
self.setSizeGripEnabled(1)
self.setModal(1)
aboutDialogLayout = QVBoxLayout(self,6,6,"aboutDialogLayout")
self.tabWidget = QTabWidget(self,"tabWidget")
self.Widget9 = QWidget(self.tabWidget,"Widget9")
self.pixmapLabel1 = QLabel(self.Widget9,"pixmapLabel1")
self.pixmapLabel1.setGeometry(QRect(312,24,50,40))
self.pixmapLabel1.setPixmap(self.image0)
self.pixmapLabel1.setScaledContents(1)
self.textLabel1 = QLabel(self.Widget9,"textLabel1")
self.textLabel1.setGeometry(QRect(360,10,142,160))
self.aboutBrowser = QTextBrowser(self.Widget9,"aboutBrowser")
self.aboutBrowser.setGeometry(QRect(12,15,271,260))
self.tabWidget.insertTab(self.Widget9,QString.fromLatin1(""))
self.Widget8 = QWidget(self.tabWidget,"Widget8")
self.authorsBrowser = QTextBrowser(self.Widget8,"authorsBrowser")
self.authorsBrowser.setGeometry(QRect(10,10,481,261))
self.tabWidget.insertTab(self.Widget8,QString.fromLatin1(""))
self.TabPage = QWidget(self.tabWidget,"TabPage")
self.ackBrowser = QTextBrowser(self.TabPage,"ackBrowser")
self.ackBrowser.setGeometry(QRect(12,14,490,260))
self.tabWidget.insertTab(self.TabPage,QString.fromLatin1(""))
self.TabPage_2 = QWidget(self.tabWidget,"TabPage_2")
self.licenseBrowser = QTextBrowser(self.TabPage_2,"licenseBrowser")
self.licenseBrowser.setGeometry(QRect(10,10,491,261))
self.licenseBrowser.setTextFormat(QTextBrowser.AutoText)
self.tabWidget.insertTab(self.TabPage_2,QString.fromLatin1(""))
aboutDialogLayout.addWidget(self.tabWidget)
Layout1 = QHBoxLayout(None,0,6,"Layout1")
Horizontal_Spacing2 = QSpacerItem(20,20,QSizePolicy.Expanding,QSizePolicy.Minimum)
Layout1.addItem(Horizontal_Spacing2)
self.buttonCancel = QPushButton(self,"buttonCancel")
self.buttonCancel.setAutoDefault(1)
Layout1.addWidget(self.buttonCancel)
aboutDialogLayout.addLayout(Layout1)
self.languageChange()
self.resize(QSize(528,368).expandedTo(self.minimumSizeHint()))
self.clearWState(Qt.WState_Polished)
self.connect(self.buttonCancel,SIGNAL("clicked()"),self.reject)
def languageChange(self):
self.setCaption(self.__tr("About Epigrass"))
self.textLabel1.setText(self.__tr("Epigrass :\n"
"EPI demiological \n"
"G eo-R eferenced \n"
"A nalysis and \n"
"S imulation \n"
"S ystem"))
self.aboutBrowser.setText(self.__tr("This is Epigrass version\n"
"1.5.0website "))
self.tabWidget.changeTab(self.Widget9,self.__tr("About"))
self.authorsBrowser.setText(self.__tr("Developers: \n"
"Flávio Codeço CoelhoTranslations: \n"
"French: \n"
"Yann Chemin\n"
""))
self.tabWidget.changeTab(self.TabPage,self.__tr("Acknowledgements"))
self.licenseBrowser.setText(self.__tr(" GNU GENERAL PUBLIC LICENSE\n"
" Version 2, June 1991\n"
"\n"
" Copyright (C) 1989, 1991 Free Software Foundation, Inc.\n"
" 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA\n"
" Everyone is permitted to copy and distribute verbatim copies\n"
" of this license document, but changing it is not allowed.\n"
"\n"
" Preamble\n"
"\n"
" The licenses for most software are designed to take away your\n"
"freedom to share and change it. By contrast, the GNU General Public\n"
"License is intended to guarantee your freedom to share and change free\n"
"software--to make sure the software is free for all its users. This\n"
"General Public License applies to most of the Free Software\n"
"Foundation's software and to any other program whose authors commit to\n"
"using it. (Some other Free Software Foundation software is covered by\n"
"the GNU Library General Public License instead.) You can apply it to\n"
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"\n"
" When we speak of free software, we are referring to freedom, not\n"
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"\n"
" We protect your rights with two steps: (1) copyright the software, and\n"
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"\n"
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"\n"
" Finally, any free program is threatened constantly by software\n"
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"patent must be licensed for everyone's free use or not licensed at all.\n"
"\n"
" The precise terms and conditions for copying, distribution and\n"
"modification follow.\n"
"\n"
" GNU GENERAL PUBLIC LICENSE\n"
" TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION\n"
"\n"
" 0. This License applies to any program or other work which contains\n"
"a notice placed by the copyright holder saying it may be distributed\n"
"under the terms of this General Public License. The \"Program\", below,\n"
"refers to any such program or work, and a \"work based on the Program\"\n"
"means either the Program or any derivative work under copyright law:\n"
"that is to say, a work containing the Program or a portion of it,\n"
"either verbatim or with modifications and/or translated into another\n"
"language. (Hereinafter, translation is included without limitation in\n"
"the term \"modification\".) Each licensee is addressed as \"you\".\n"
"\n"
"Activities other than copying, distribution and modification are not\n"
"covered by this License; they are outside its scope. The act of\n"
"running the Program is not restricted, and the output from the Program\n"
"is covered only if its contents constitute a work based on the\n"
"Program (independent of having been made by running the Program).\n"
"Whether that is true depends on what the Program does.\n"
"\n"
" 1. You may copy and distribute verbatim copies of the Program's\n"
"source code as you receive it, in any medium, provided that you\n"
"conspicuously and appropriately publish on each copy an appropriate\n"
"copyright notice and disclaimer of warranty; keep intact all the\n"
"notices that refer to this License and to the absence of any warranty;\n"
"and give any other recipients of the Program a copy of this License\n"
"along with the Program.\n"
"\n"
"You may charge a fee for the physical act of transferring a copy, and\n"
"you may at your option offer warranty protection in exchange for a fee.\n"
"\n"
" 2. You may modify your copy or copies of the Program or any portion\n"
"of it, thus forming a work based on the Program, and copy and\n"
"distribute such modifications or work under the terms of Section 1\n"
"above, provided that you also meet all of these conditions:\n"
"\n"
" a) You must cause the modified files to carry prominent notices\n"
" stating that you changed the files and the date of any change.\n"
"\n"
" b) You must cause any work that you distribute or publish, that in\n"
" whole or in part contains or is derived from the Program or any\n"
" part thereof, to be licensed as a whole at no charge to all third\n"
" parties under the terms of this License.\n"
"\n"
" c) If the modified program normally reads commands interactively\n"
" when run, you must cause it, when started running for such\n"
" interactive use in the most ordinary way, to print or display an\n"
" announcement including an appropriate copyright notice and a\n"
" notice that there is no warranty (or else, saying that you provide\n"
" a warranty) and that users may redistribute the program under\n"
" these conditions, and telling the user how to view a copy of this\n"
" License. (Exception: if the Program itself is interactive but\n"
" does not normally print such an announcement, your work based on\n"
" the Program is not required to print an announcement.)\n"
"\n"
"These requirements apply to the modified work as a whole. If\n"
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"on the Program, the distribution of the whole must be on the terms of\n"
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"entire whole, and thus to each and every part regardless of who wrote it.\n"
"\n"
"Thus, it is not the intent of this section to claim rights or contest\n"
"your rights to work written entirely by you; rather, the intent is to\n"
"exercise the right to control the distribution of derivative or\n"
"collective works based on the Program.\n"
"\n"
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"with the Program (or with a work based on the Program) on a volume of\n"
"a storage or distribution medium does not bring the other work under\n"
"the scope of this License.\n"
"\n"
" 3. You may copy and distribute the Program (or a work based on it,\n"
"under Section 2) in object code or executable form under the terms of\n"
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"\n"
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" source code, which must be distributed under the terms of Sections\n"
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"\n"
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"compelled to copy the source along with the object code.\n"
"\n"
" 4. You may not copy, modify, sublicense, or distribute the Program\n"
"except as expressly provided under this License. Any attempt\n"
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"void, and will automatically terminate your rights under this License.\n"
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"\n"
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"\n"
" 6. Each time you redistribute the Program (or any work based on the\n"
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" 7. If, as a consequence of a court judgment or allegation of patent\n"
"infringement or for any other reason (not limited to patent issues),\n"
"conditions are imposed on you (whether by court order, agreement or\n"
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"If any portion of this section is held invalid or unenforceable under\n"
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"\n"
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" 8. If the distribution and/or use of the Program is restricted in\n"
"certain countries either by patents or by copyrighted interfaces, the\n"
"original copyright holder who places the Program under this License\n"
"may add an explicit geographical distribution limitation excluding\n"
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"\n"
" 9. The Free Software Foundation may publish revised and/or new versions\n"
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"address new problems or concerns.\n"
"\n"
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"later version\", you have the option of following the terms and conditions\n"
"either of that version or of any later version published by the Free\n"
"Software Foundation. If the Program does not specify a version number of\n"
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"Foundation.\n"
"\n"
" 10. If you wish to incorporate parts of the Program into other free\n"
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"\n"
" NO WARRANTY\n"
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" 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY\n"
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"\n"
" 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING\n"
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"\n"
" END OF TERMS AND CONDITIONS\n"
"\n"
" How to Apply These Terms to Your New Programs\n"
"\n"
" If you develop a new program, and you want it to be of the greatest\n"
"possible use to the public, the best way to achieve this is to make it\n"
"free software which everyone can redistribute and change under these terms.\n"
"\n"
" To do so, attach the following notices to the program. It is safest\n"
"to attach them to the start of each source file to most effectively\n"
"convey the exclusion of warranty; and each file should have at least\n"
"the \"copyright\" line and a pointer to where the full notice is found.\n"
"\n"
" \n"
" Copyright (C) \n"
"\n"
" This program is free software; you can redistribute it and/or modify\n"
" it under the terms of the GNU General Public License as published by\n"
" the Free Software Foundation; either version 2 of the License, or\n"
" (at your option) any later version.\n"
"\n"
" This program is distributed in the hope that it will be useful,\n"
" but WITHOUT ANY WARRANTY; without even the implied warranty of\n"
" MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n"
" GNU General Public License for more details.\n"
"\n"
" You should have received a copy of the GNU General Public License\n"
" along with this program; if not, write to the Free Software\n"
" Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA\n"
"\n"
"\n"
"Also add information on how to contact you by electronic and paper mail.\n"
"\n"
"If the program is interactive, make it output a short notice like this\n"
"when it starts in an interactive mode:\n"
"\n"
" Gnomovision version 69, Copyright (C) year name of author\n"
" Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.\n"
" This is free software, and you are welcome to redistribute it\n"
" under certain conditions; type `show c' for details.\n"
"\n"
"The hypothetical commands `show w' and `show c' should show the appropriate\n"
"parts of the General Public License. Of course, the commands you use may\n"
"be called something other than `show w' and `show c'; they could even be\n"
"mouse-clicks or menu items--whatever suits your program.\n"
"\n"
"You should also get your employer (if you work as a programmer) or your\n"
"school, if any, to sign a \"copyright disclaimer\" for the program, if\n"
"necessary. Here is a sample; alter the names:\n"
"\n"
" Yoyodyne, Inc., hereby disclaims all copyright interest in the program\n"
" `Gnomovision' (which makes passes at compilers) written by James Hacker.\n"
"\n"
" , 1 April 1989\n"
" Ty Coon, President of Vice\n"
"\n"
"This General Public License does not permit incorporating your program into\n"
"proprietary programs. If your program is a subroutine library, you may\n"
"consider it more useful to permit linking proprietary applications with the\n"
"library. If this is what you want to do, use the GNU Library General\n"
"Public License instead of this License.\n"
""))
QToolTip.add(self.licenseBrowser,self.__tr("To use Epigrass you have to agree with this license"))
self.tabWidget.changeTab(self.TabPage_2,self.__tr("License"))
self.buttonCancel.setText(self.__tr("&Close"))
self.buttonCancel.setAccel(QKeySequence(self.__tr("Alt+C")))
def __tr(self,s,c = None):
return qApp.translate("aboutDialog",s,c)
if __name__ == "__main__":
a = QApplication(sys.argv)
QObject.connect(a,SIGNAL("lastWindowClosed()"),a,SLOT("quit()"))
w = aboutDialog()
a.setMainWidget(w)
w.show()
a.exec_loop()
epigrass-2.4.7/Epigrass/about.py.bak 0000664 0000000 0000000 00000061365 12720633740 017315 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/flavio/Documents/Projetos/Epigrass/Epigrass-devel/about.ui'
#
# Created: Qua Jul 11 17:35:33 2007
# by: The PyQt User Interface Compiler (pyuic) 3.17
#
# WARNING! All changes made in this file will be lost!
import sys
from qt import *
image0_data = \
"\x89\x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d" \
"\x49\x48\x44\x52\x00\x00\x00\x20\x00\x00\x00\x20" \
"\x08\x06\x00\x00\x00\x73\x7a\x7a\xf4\x00\x00\x00" \
"\xdc\x49\x44\x41\x54\x58\x85\xed\x96\x59\x0e\xc3" \
"\x20\x0c\x44\x1f\x55\xef\x55\x1f\x9d\x9b\x39\x1f" \
"\x55\x22\x67\x81\x62\x16\xd1\x56\x19\x29\x5f\x04" \
"\x66\x0c\xc3\x98\x00\x40\x44\x59\x21\x04\x3c\x68" \
"\x99\x0b\x3c\xcf\xeb\x45\xbd\xfa\x31\x05\x41\xbc" \
"\x9c\x79\x01\x82\x78\xab\x70\x09\x4e\xc2\x5b\x79" \
"\x2f\x3c\x66\x90\xde\x02\x6e\x01\x5f\x25\xe0\x7d" \
"\xe7\x4b\xd2\xac\x31\xf1\x52\x28\x4e\xc2\xd6\xc4" \
"\x2b\x16\x90\x49\xc2\xb1\x41\x35\x2b\x09\x4f\x3b" \
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"\x35\x47\x13\x68\x30\xa7\xad\xb6\xf4\x38\x22\x51" \
"\x15\xb6\xaf\x9a\xdc\x92\x7a\xbd\xd0\x55\xc0\x0c" \
"\x23\xfe\x46\x12\x66\x8d\xd6\xeb\x4d\xa8\x02\x21" \
"\xa6\x3c\x20\x86\x6f\x3f\x2e\xc8\x36\xb7\x06\xd3" \
"\x77\xc0\xac\x53\x6f\xc0\x96\xb9\xd3\x4d\xb8\x43" \
"\x6d\x25\xff\xb3\x03\xe0\xaf\x66\x48\x78\x79\x7a" \
"\x41\x2b\x57\xf2\xda\xac\x8b\xbf\x4c\x06\xac\x57" \
"\x30\xd7\x29\xbb\xe2\xd8\xed\x46\xf4\x8b\x8f\x15" \
"\x74\xeb\xf7\x09\x2c\x49\xf5\x7d\xcb\x80\x93\xf4" \
"\xd9\x00\x00\x00\x00\x49\x45\x4e\x44\xae\x42\x60" \
"\x82"
class aboutDialog(QDialog):
def __init__(self,parent = None,name = None,modal = 0,fl = 0):
QDialog.__init__(self,parent,name,modal,fl)
self.image0 = QPixmap()
self.image0.loadFromData(image0_data,"PNG")
if not name:
self.setName("aboutDialog")
self.setSizeGripEnabled(1)
self.setModal(1)
aboutDialogLayout = QVBoxLayout(self,6,6,"aboutDialogLayout")
self.tabWidget = QTabWidget(self,"tabWidget")
self.Widget9 = QWidget(self.tabWidget,"Widget9")
self.pixmapLabel1 = QLabel(self.Widget9,"pixmapLabel1")
self.pixmapLabel1.setGeometry(QRect(312,24,50,40))
self.pixmapLabel1.setPixmap(self.image0)
self.pixmapLabel1.setScaledContents(1)
self.textLabel1 = QLabel(self.Widget9,"textLabel1")
self.textLabel1.setGeometry(QRect(360,10,142,160))
self.aboutBrowser = QTextBrowser(self.Widget9,"aboutBrowser")
self.aboutBrowser.setGeometry(QRect(12,15,271,260))
self.tabWidget.insertTab(self.Widget9,QString.fromLatin1(""))
self.Widget8 = QWidget(self.tabWidget,"Widget8")
self.authorsBrowser = QTextBrowser(self.Widget8,"authorsBrowser")
self.authorsBrowser.setGeometry(QRect(10,10,481,261))
self.tabWidget.insertTab(self.Widget8,QString.fromLatin1(""))
self.TabPage = QWidget(self.tabWidget,"TabPage")
self.ackBrowser = QTextBrowser(self.TabPage,"ackBrowser")
self.ackBrowser.setGeometry(QRect(12,14,490,260))
self.tabWidget.insertTab(self.TabPage,QString.fromLatin1(""))
self.TabPage_2 = QWidget(self.tabWidget,"TabPage_2")
self.licenseBrowser = QTextBrowser(self.TabPage_2,"licenseBrowser")
self.licenseBrowser.setGeometry(QRect(10,10,491,261))
self.licenseBrowser.setTextFormat(QTextBrowser.AutoText)
self.tabWidget.insertTab(self.TabPage_2,QString.fromLatin1(""))
aboutDialogLayout.addWidget(self.tabWidget)
Layout1 = QHBoxLayout(None,0,6,"Layout1")
Horizontal_Spacing2 = QSpacerItem(20,20,QSizePolicy.Expanding,QSizePolicy.Minimum)
Layout1.addItem(Horizontal_Spacing2)
self.buttonCancel = QPushButton(self,"buttonCancel")
self.buttonCancel.setAutoDefault(1)
Layout1.addWidget(self.buttonCancel)
aboutDialogLayout.addLayout(Layout1)
self.languageChange()
self.resize(QSize(528,368).expandedTo(self.minimumSizeHint()))
self.clearWState(Qt.WState_Polished)
self.connect(self.buttonCancel,SIGNAL("clicked()"),self.reject)
def languageChange(self):
self.setCaption(self.__tr("About Epigrass"))
self.textLabel1.setText(self.__tr("Epigrass :\n"
"EPI demiological \n"
"G eo-R eferenced \n"
"A nalysis and \n"
"S imulation \n"
"S ystem"))
self.aboutBrowser.setText(self.__tr("This is Epigrass version\n"
"1.5.0website "))
self.tabWidget.changeTab(self.Widget9,self.__tr("About"))
self.authorsBrowser.setText(self.__tr("Developers: \n"
"Flávio Codeço CoelhoTranslations: \n"
"French: \n"
"Yann Chemin\n"
""))
self.tabWidget.changeTab(self.TabPage,self.__tr("Acknowledgements"))
self.licenseBrowser.setText(self.__tr(" GNU GENERAL PUBLIC LICENSE\n"
" Version 2, June 1991\n"
"\n"
" Copyright (C) 1989, 1991 Free Software Foundation, Inc.\n"
" 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA\n"
" Everyone is permitted to copy and distribute verbatim copies\n"
" of this license document, but changing it is not allowed.\n"
"\n"
" Preamble\n"
"\n"
" The licenses for most software are designed to take away your\n"
"freedom to share and change it. By contrast, the GNU General Public\n"
"License is intended to guarantee your freedom to share and change free\n"
"software--to make sure the software is free for all its users. This\n"
"General Public License applies to most of the Free Software\n"
"Foundation's software and to any other program whose authors commit to\n"
"using it. (Some other Free Software Foundation software is covered by\n"
"the GNU Library General Public License instead.) You can apply it to\n"
"your programs, too.\n"
"\n"
" When we speak of free software, we are referring to freedom, not\n"
"price. Our General Public Licenses are designed to make sure that you\n"
"have the freedom to distribute copies of free software (and charge for\n"
"this service if you wish), that you receive source code or can get it\n"
"if you want it, that you can change the software or use pieces of it\n"
"in new free programs; and that you know you can do these things.\n"
"\n"
" To protect your rights, we need to make restrictions that forbid\n"
"anyone to deny you these rights or to ask you to surrender the rights.\n"
"These restrictions translate to certain responsibilities for you if you\n"
"distribute copies of the software, or if you modify it.\n"
"\n"
" For example, if you distribute copies of such a program, whether\n"
"gratis or for a fee, you must give the recipients all the rights that\n"
"you have. You must make sure that they, too, receive or can get the\n"
"source code. And you must show them these terms so they know their\n"
"rights.\n"
"\n"
" We protect your rights with two steps: (1) copyright the software, and\n"
"(2) offer you this license which gives you legal permission to copy,\n"
"distribute and/or modify the software.\n"
"\n"
" Also, for each author's protection and ours, we want to make certain\n"
"that everyone understands that there is no warranty for this free\n"
"software. If the software is modified by someone else and passed on, we\n"
"want its recipients to know that what they have is not the original, so\n"
"that any problems introduced by others will not reflect on the original\n"
"authors' reputations.\n"
"\n"
" Finally, any free program is threatened constantly by software\n"
"patents. We wish to avoid the danger that redistributors of a free\n"
"program will individually obtain patent licenses, in effect making the\n"
"program proprietary. To prevent this, we have made it clear that any\n"
"patent must be licensed for everyone's free use or not licensed at all.\n"
"\n"
" The precise terms and conditions for copying, distribution and\n"
"modification follow.\n"
"\n"
" GNU GENERAL PUBLIC LICENSE\n"
" TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION\n"
"\n"
" 0. This License applies to any program or other work which contains\n"
"a notice placed by the copyright holder saying it may be distributed\n"
"under the terms of this General Public License. The \"Program\", below,\n"
"refers to any such program or work, and a \"work based on the Program\"\n"
"means either the Program or any derivative work under copyright law:\n"
"that is to say, a work containing the Program or a portion of it,\n"
"either verbatim or with modifications and/or translated into another\n"
"language. (Hereinafter, translation is included without limitation in\n"
"the term \"modification\".) Each licensee is addressed as \"you\".\n"
"\n"
"Activities other than copying, distribution and modification are not\n"
"covered by this License; they are outside its scope. The act of\n"
"running the Program is not restricted, and the output from the Program\n"
"is covered only if its contents constitute a work based on the\n"
"Program (independent of having been made by running the Program).\n"
"Whether that is true depends on what the Program does.\n"
"\n"
" 1. You may copy and distribute verbatim copies of the Program's\n"
"source code as you receive it, in any medium, provided that you\n"
"conspicuously and appropriately publish on each copy an appropriate\n"
"copyright notice and disclaimer of warranty; keep intact all the\n"
"notices that refer to this License and to the absence of any warranty;\n"
"and give any other recipients of the Program a copy of this License\n"
"along with the Program.\n"
"\n"
"You may charge a fee for the physical act of transferring a copy, and\n"
"you may at your option offer warranty protection in exchange for a fee.\n"
"\n"
" 2. You may modify your copy or copies of the Program or any portion\n"
"of it, thus forming a work based on the Program, and copy and\n"
"distribute such modifications or work under the terms of Section 1\n"
"above, provided that you also meet all of these conditions:\n"
"\n"
" a) You must cause the modified files to carry prominent notices\n"
" stating that you changed the files and the date of any change.\n"
"\n"
" b) You must cause any work that you distribute or publish, that in\n"
" whole or in part contains or is derived from the Program or any\n"
" part thereof, to be licensed as a whole at no charge to all third\n"
" parties under the terms of this License.\n"
"\n"
" c) If the modified program normally reads commands interactively\n"
" when run, you must cause it, when started running for such\n"
" interactive use in the most ordinary way, to print or display an\n"
" announcement including an appropriate copyright notice and a\n"
" notice that there is no warranty (or else, saying that you provide\n"
" a warranty) and that users may redistribute the program under\n"
" these conditions, and telling the user how to view a copy of this\n"
" License. (Exception: if the Program itself is interactive but\n"
" does not normally print such an announcement, your work based on\n"
" the Program is not required to print an announcement.)\n"
"\n"
"These requirements apply to the modified work as a whole. If\n"
"identifiable sections of that work are not derived from the Program,\n"
"and can be reasonably considered independent and separate works in\n"
"themselves, then this License, and its terms, do not apply to those\n"
"sections when you distribute them as separate works. But when you\n"
"distribute the same sections as part of a whole which is a work based\n"
"on the Program, the distribution of the whole must be on the terms of\n"
"this License, whose permissions for other licensees extend to the\n"
"entire whole, and thus to each and every part regardless of who wrote it.\n"
"\n"
"Thus, it is not the intent of this section to claim rights or contest\n"
"your rights to work written entirely by you; rather, the intent is to\n"
"exercise the right to control the distribution of derivative or\n"
"collective works based on the Program.\n"
"\n"
"In addition, mere aggregation of another work not based on the Program\n"
"with the Program (or with a work based on the Program) on a volume of\n"
"a storage or distribution medium does not bring the other work under\n"
"the scope of this License.\n"
"\n"
" 3. You may copy and distribute the Program (or a work based on it,\n"
"under Section 2) in object code or executable form under the terms of\n"
"Sections 1 and 2 above provided that you also do one of the following:\n"
"\n"
" a) Accompany it with the complete corresponding machine-readable\n"
" source code, which must be distributed under the terms of Sections\n"
" 1 and 2 above on a medium customarily used for software interchange; or,\n"
"\n"
" b) Accompany it with a written offer, valid for at least three\n"
" years, to give any third party, for a charge no more than your\n"
" cost of physically performing source distribution, a complete\n"
" machine-readable copy of the corresponding source code, to be\n"
" distributed under the terms of Sections 1 and 2 above on a medium\n"
" customarily used for software interchange; or,\n"
"\n"
" c) Accompany it with the information you received as to the offer\n"
" to distribute corresponding source code. (This alternative is\n"
" allowed only for noncommercial distribution and only if you\n"
" received the program in object code or executable form with such\n"
" an offer, in accord with Subsection b above.)\n"
"\n"
"The source code for a work means the preferred form of the work for\n"
"making modifications to it. For an executable work, complete source\n"
"code means all the source code for all modules it contains, plus any\n"
"associated interface definition files, plus the scripts used to\n"
"control compilation and installation of the executable. However, as a\n"
"special exception, the source code distributed need not include\n"
"anything that is normally distributed (in either source or binary\n"
"form) with the major components (compiler, kernel, and so on) of the\n"
"operating system on which the executable runs, unless that component\n"
"itself accompanies the executable.\n"
"\n"
"If distribution of executable or object code is made by offering\n"
"access to copy from a designated place, then offering equivalent\n"
"access to copy the source code from the same place counts as\n"
"distribution of the source code, even though third parties are not\n"
"compelled to copy the source along with the object code.\n"
"\n"
" 4. You may not copy, modify, sublicense, or distribute the Program\n"
"except as expressly provided under this License. Any attempt\n"
"otherwise to copy, modify, sublicense or distribute the Program is\n"
"void, and will automatically terminate your rights under this License.\n"
"However, parties who have received copies, or rights, from you under\n"
"this License will not have their licenses terminated so long as such\n"
"parties remain in full compliance.\n"
"\n"
" 5. You are not required to accept this License, since you have not\n"
"signed it. However, nothing else grants you permission to modify or\n"
"distribute the Program or its derivative works. These actions are\n"
"prohibited by law if you do not accept this License. Therefore, by\n"
"modifying or distributing the Program (or any work based on the\n"
"Program), you indicate your acceptance of this License to do so, and\n"
"all its terms and conditions for copying, distributing or modifying\n"
"the Program or works based on it.\n"
"\n"
" 6. Each time you redistribute the Program (or any work based on the\n"
"Program), the recipient automatically receives a license from the\n"
"original licensor to copy, distribute or modify the Program subject to\n"
"these terms and conditions. You may not impose any further\n"
"restrictions on the recipients' exercise of the rights granted herein.\n"
"You are not responsible for enforcing compliance by third parties to\n"
"this License.\n"
"\n"
" 7. If, as a consequence of a court judgment or allegation of patent\n"
"infringement or for any other reason (not limited to patent issues),\n"
"conditions are imposed on you (whether by court order, agreement or\n"
"otherwise) that contradict the conditions of this License, they do not\n"
"excuse you from the conditions of this License. If you cannot\n"
"distribute so as to satisfy simultaneously your obligations under this\n"
"License and any other pertinent obligations, then as a consequence you\n"
"may not distribute the Program at all. For example, if a patent\n"
"license would not permit royalty-free redistribution of the Program by\n"
"all those who receive copies directly or indirectly through you, then\n"
"the only way you could satisfy both it and this License would be to\n"
"refrain entirely from distribution of the Program.\n"
"\n"
"If any portion of this section is held invalid or unenforceable under\n"
"any particular circumstance, the balance of the section is intended to\n"
"apply and the section as a whole is intended to apply in other\n"
"circumstances.\n"
"\n"
"It is not the purpose of this section to induce you to infringe any\n"
"patents or other property right claims or to contest validity of any\n"
"such claims; this section has the sole purpose of protecting the\n"
"integrity of the free software distribution system, which is\n"
"implemented by public license practices. Many people have made\n"
"generous contributions to the wide range of software distributed\n"
"through that system in reliance on consistent application of that\n"
"system; it is up to the author/donor to decide if he or she is willing\n"
"to distribute software through any other system and a licensee cannot\n"
"impose that choice.\n"
"\n"
"This section is intended to make thoroughly clear what is believed to\n"
"be a consequence of the rest of this License.\n"
"\n"
" 8. If the distribution and/or use of the Program is restricted in\n"
"certain countries either by patents or by copyrighted interfaces, the\n"
"original copyright holder who places the Program under this License\n"
"may add an explicit geographical distribution limitation excluding\n"
"those countries, so that distribution is permitted only in or among\n"
"countries not thus excluded. In such case, this License incorporates\n"
"the limitation as if written in the body of this License.\n"
"\n"
" 9. The Free Software Foundation may publish revised and/or new versions\n"
"of the General Public License from time to time. Such new versions will\n"
"be similar in spirit to the present version, but may differ in detail to\n"
"address new problems or concerns.\n"
"\n"
"Each version is given a distinguishing version number. If the Program\n"
"specifies a version number of this License which applies to it and \"any\n"
"later version\", you have the option of following the terms and conditions\n"
"either of that version or of any later version published by the Free\n"
"Software Foundation. If the Program does not specify a version number of\n"
"this License, you may choose any version ever published by the Free Software\n"
"Foundation.\n"
"\n"
" 10. If you wish to incorporate parts of the Program into other free\n"
"programs whose distribution conditions are different, write to the author\n"
"to ask for permission. For software which is copyrighted by the Free\n"
"Software Foundation, write to the Free Software Foundation; we sometimes\n"
"make exceptions for this. Our decision will be guided by the two goals\n"
"of preserving the free status of all derivatives of our free software and\n"
"of promoting the sharing and reuse of software generally.\n"
"\n"
" NO WARRANTY\n"
"\n"
" 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY\n"
"FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN\n"
"OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES\n"
"PROVIDE THE PROGRAM \"AS IS\" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED\n"
"OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF\n"
"MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS\n"
"TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE\n"
"PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,\n"
"REPAIR OR CORRECTION.\n"
"\n"
" 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING\n"
"WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR\n"
"REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,\n"
"INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING\n"
"OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED\n"
"TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY\n"
"YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER\n"
"PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE\n"
"POSSIBILITY OF SUCH DAMAGES.\n"
"\n"
" END OF TERMS AND CONDITIONS\n"
"\n"
" How to Apply These Terms to Your New Programs\n"
"\n"
" If you develop a new program, and you want it to be of the greatest\n"
"possible use to the public, the best way to achieve this is to make it\n"
"free software which everyone can redistribute and change under these terms.\n"
"\n"
" To do so, attach the following notices to the program. It is safest\n"
"to attach them to the start of each source file to most effectively\n"
"convey the exclusion of warranty; and each file should have at least\n"
"the \"copyright\" line and a pointer to where the full notice is found.\n"
"\n"
" \n"
" Copyright (C) \n"
"\n"
" This program is free software; you can redistribute it and/or modify\n"
" it under the terms of the GNU General Public License as published by\n"
" the Free Software Foundation; either version 2 of the License, or\n"
" (at your option) any later version.\n"
"\n"
" This program is distributed in the hope that it will be useful,\n"
" but WITHOUT ANY WARRANTY; without even the implied warranty of\n"
" MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n"
" GNU General Public License for more details.\n"
"\n"
" You should have received a copy of the GNU General Public License\n"
" along with this program; if not, write to the Free Software\n"
" Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA\n"
"\n"
"\n"
"Also add information on how to contact you by electronic and paper mail.\n"
"\n"
"If the program is interactive, make it output a short notice like this\n"
"when it starts in an interactive mode:\n"
"\n"
" Gnomovision version 69, Copyright (C) year name of author\n"
" Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.\n"
" This is free software, and you are welcome to redistribute it\n"
" under certain conditions; type `show c' for details.\n"
"\n"
"The hypothetical commands `show w' and `show c' should show the appropriate\n"
"parts of the General Public License. Of course, the commands you use may\n"
"be called something other than `show w' and `show c'; they could even be\n"
"mouse-clicks or menu items--whatever suits your program.\n"
"\n"
"You should also get your employer (if you work as a programmer) or your\n"
"school, if any, to sign a \"copyright disclaimer\" for the program, if\n"
"necessary. Here is a sample; alter the names:\n"
"\n"
" Yoyodyne, Inc., hereby disclaims all copyright interest in the program\n"
" `Gnomovision' (which makes passes at compilers) written by James Hacker.\n"
"\n"
" , 1 April 1989\n"
" Ty Coon, President of Vice\n"
"\n"
"This General Public License does not permit incorporating your program into\n"
"proprietary programs. If your program is a subroutine library, you may\n"
"consider it more useful to permit linking proprietary applications with the\n"
"library. If this is what you want to do, use the GNU Library General\n"
"Public License instead of this License.\n"
""))
QToolTip.add(self.licenseBrowser,self.__tr("To use Epigrass you have to agree with this license"))
self.tabWidget.changeTab(self.TabPage_2,self.__tr("License"))
self.buttonCancel.setText(self.__tr("&Close"))
self.buttonCancel.setAccel(QKeySequence(self.__tr("Alt+C")))
def __tr(self,s,c = None):
return qApp.translate("aboutDialog",s,c)
if __name__ == "__main__":
a = QApplication(sys.argv)
QObject.connect(a,SIGNAL("lastWindowClosed()"),a,SLOT("quit()"))
w = aboutDialog()
a.setMainWidget(w)
w.show()
a.exec_loop()
epigrass-2.4.7/Epigrass/cpanel.py 0000664 0000000 0000000 00000051331 12772733376 016716 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/flavio/Documents/Projetos/Epigrass/Epigrass-devel/cpanel.ui'
#
# Created: Qui Jun 28 18:44:11 2007
# by: The PyQt User Interface Compiler (pyuic) 3.17
#
# WARNING! All changes made in this file will be lost!
import sys
from qt import *
image0_data = \
"\x89\x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d" \
"\x49\x48\x44\x52\x00\x00\x00\x20\x00\x00\x00\x20" \
"\x08\x06\x00\x00\x00\x73\x7a\x7a\xf4\x00\x00\x00" \
"\xdc\x49\x44\x41\x54\x58\x85\xed\x96\x59\x0e\xc3" \
"\x20\x0c\x44\x1f\x55\xef\x55\x1f\x9d\x9b\x39\x1f" \
"\x55\x22\x67\x81\x62\x16\xd1\x56\x19\x29\x5f\x04" \
"\x66\x0c\xc3\x98\x00\x40\x44\x59\x21\x04\x3c\x68" \
"\x99\x0b\x3c\xcf\xeb\x45\xbd\xfa\x31\x05\x41\xbc" \
"\x9c\x79\x01\x82\x78\xab\x70\x09\x4e\xc2\x5b\x79" \
"\x2f\x3c\x66\x90\xde\x02\x6e\x01\x5f\x25\xe0\x7d" \
"\xe7\x4b\xd2\xac\x31\xf1\x52\x28\x4e\xc2\xd6\xc4" \
"\x2b\x16\x90\x49\xc2\xb1\x41\x35\x2b\x09\x4f\x3b" \
"\x60\x91\x39\x8e\x71\x1e\x38\x92\x5f\x91\xd9\x31" \
"\x35\x47\x13\x68\x30\xa7\xad\xb6\xf4\x38\x22\x51" \
"\x15\xb6\xaf\x9a\xdc\x92\x7a\xbd\xd0\x55\xc0\x0c" \
"\x23\xfe\x46\x12\x66\x8d\xd6\xeb\x4d\xa8\x02\x21" \
"\xa6\x3c\x20\x86\x6f\x3f\x2e\xc8\x36\xb7\x06\xd3" \
"\x77\xc0\xac\x53\x6f\xc0\x96\xb9\xd3\x4d\xb8\x43" \
"\x6d\x25\xff\xb3\x03\xe0\xaf\x66\x48\x78\x79\x7a" \
"\x41\x2b\x57\xf2\xda\xac\x8b\xbf\x4c\x06\xac\x57" \
"\x30\xd7\x29\xbb\xe2\xd8\xed\x46\xf4\x8b\x8f\x15" \
"\x74\xeb\xf7\x09\x2c\x49\xf5\x7d\xcb\x80\x93\xf4" \
"\xd9\x00\x00\x00\x00\x49\x45\x4e\x44\xae\x42\x60" \
"\x82"
class MainPanel(QWidget):
def __init__(self,parent = None,name = None,fl = 0):
QWidget.__init__(self,parent,name,fl)
self.image0 = QPixmap()
self.image0.loadFromData(image0_data,"PNG")
if not name:
self.setName("MainPanel")
self.setSizePolicy(QSizePolicy(QSizePolicy.Expanding,QSizePolicy.Expanding,0,0,self.sizePolicy().hasHeightForWidth()))
self.setMinimumSize(QSize(560,480))
self.setIcon(self.image0)
LayoutWidget = QWidget(self,"progress_Layout")
LayoutWidget.setGeometry(QRect(11,415,538,25))
progress_Layout = QHBoxLayout(LayoutWidget,6,6,"progress_Layout")
self.textLabel1_6 = QLabel(LayoutWidget,"textLabel1_6")
self.textLabel1_6.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Fixed,0,0,self.textLabel1_6.sizePolicy().hasHeightForWidth()))
progress_Layout.addWidget(self.textLabel1_6)
self.stepLCD = QLCDNumber(LayoutWidget,"stepLCD")
self.stepLCD.setSizePolicy(QSizePolicy(QSizePolicy.Minimum,QSizePolicy.Fixed,0,0,self.stepLCD.sizePolicy().hasHeightForWidth()))
progress_Layout.addWidget(self.stepLCD)
LayoutWidget_2 = QWidget(self,"Run_Layout")
LayoutWidget_2.setGeometry(QRect(11,442,538,32))
Run_Layout = QHBoxLayout(LayoutWidget_2,0,6,"Run_Layout")
self.buttonHelp = QPushButton(LayoutWidget_2,"buttonHelp")
self.buttonHelp.setAutoDefault(1)
Run_Layout.addWidget(self.buttonHelp)
Horizontal_Spacing2 = QSpacerItem(20,20,QSizePolicy.Expanding,QSizePolicy.Minimum)
Run_Layout.addItem(Horizontal_Spacing2)
self.buttonRun = QPushButton(LayoutWidget_2,"buttonRun")
self.buttonRun.setAutoDefault(1)
self.buttonRun.setDefault(1)
Run_Layout.addWidget(self.buttonRun)
self.buttonExit = QPushButton(LayoutWidget_2,"buttonExit")
self.buttonExit.setAutoDefault(1)
Run_Layout.addWidget(self.buttonExit)
self.tabWidget = QTabWidget(self,"tabWidget")
self.tabWidget.setEnabled(1)
self.tabWidget.setGeometry(QRect(11,6,538,407))
self.tabWidget.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.MinimumExpanding,0,0,self.tabWidget.sizePolicy().hasHeightForWidth()))
self.Widget8 = QWidget(self.tabWidget,"Widget8")
self.splitter6 = QSplitter(self.Widget8,"splitter6")
self.splitter6.setGeometry(QRect(10,0,520,360))
self.splitter6.setOrientation(QSplitter.Vertical)
self.modSpec = QGroupBox(self.splitter6,"modSpec")
self.modSpec.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.MinimumExpanding,0,0,self.modSpec.sizePolicy().hasHeightForWidth()))
self.modSpec.setMinimumSize(QSize(518,80))
LayoutWidget_3 = QWidget(self.modSpec,"layout7")
LayoutWidget_3.setGeometry(QRect(10,20,500,60))
layout7 = QGridLayout(LayoutWidget_3,1,1,6,6,"layout7")
self.chooseButton = QPushButton(LayoutWidget_3,"chooseButton")
layout7.addWidget(self.chooseButton,1,2)
self.textLabel1 = QLabel(LayoutWidget_3,"textLabel1")
layout7.addWidget(self.textLabel1,0,0)
spacer4 = QSpacerItem(370,20,QSizePolicy.Expanding,QSizePolicy.Minimum)
layout7.addMultiCell(spacer4,0,0,1,3)
self.scriptNameEdit = QLineEdit(LayoutWidget_3,"scriptNameEdit")
self.scriptNameEdit.setMargin(1)
layout7.addMultiCellWidget(self.scriptNameEdit,1,1,0,1)
self.editButton = QPushButton(LayoutWidget_3,"editButton")
layout7.addWidget(self.editButton,1,3)
LayoutWidget_4 = QWidget(self.splitter6,"Database_layout")
Database_layout = QGridLayout(LayoutWidget_4,1,1,6,6,"Database_layout")
spacer3 = QSpacerItem(20,100,QSizePolicy.Minimum,QSizePolicy.Expanding)
Database_layout.addItem(spacer3,1,0)
self.dbSpecGroupBox = QGroupBox(LayoutWidget_4,"dbSpecGroupBox")
self.dbSpecGroupBox.setEnabled(0)
self.dbSpecGroupBox.setSizePolicy(QSizePolicy(QSizePolicy.Expanding,QSizePolicy.MinimumExpanding,0,0,self.dbSpecGroupBox.sizePolicy().hasHeightForWidth()))
LayoutWidget_5 = QWidget(self.dbSpecGroupBox,"layout7")
LayoutWidget_5.setGeometry(QRect(10,20,360,140))
layout7_2 = QGridLayout(LayoutWidget_5,1,1,6,6,"layout7_2")
self.textLabel2 = QLabel(LayoutWidget_5,"textLabel2")
self.textLabel2.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Fixed,0,0,self.textLabel2.sizePolicy().hasHeightForWidth()))
layout7_2.addWidget(self.textLabel2,0,0)
self.portEdit = QLineEdit(LayoutWidget_5,"portEdit")
layout7_2.addWidget(self.portEdit,1,1)
self.textLabel3 = QLabel(LayoutWidget_5,"textLabel3")
self.textLabel3.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Fixed,0,0,self.textLabel3.sizePolicy().hasHeightForWidth()))
layout7_2.addWidget(self.textLabel3,0,1)
self.pwEdit = QLineEdit(LayoutWidget_5,"pwEdit")
self.pwEdit.setEchoMode(QLineEdit.Password)
layout7_2.addWidget(self.pwEdit,3,1)
self.textLabel1_2 = QLabel(LayoutWidget_5,"textLabel1_2")
self.textLabel1_2.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_2.sizePolicy().hasHeightForWidth()))
layout7_2.addWidget(self.textLabel1_2,2,1)
self.textLabel4 = QLabel(LayoutWidget_5,"textLabel4")
self.textLabel4.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel4.sizePolicy().hasHeightForWidth()))
layout7_2.addWidget(self.textLabel4,2,0)
self.hostnEdit = QLineEdit(LayoutWidget_5,"hostnEdit")
layout7_2.addWidget(self.hostnEdit,1,0)
self.uidEdit = QLineEdit(LayoutWidget_5,"uidEdit")
layout7_2.addWidget(self.uidEdit,3,0)
Database_layout.addMultiCellWidget(self.dbSpecGroupBox,0,1,1,1)
layout5 = QVBoxLayout(None,0,6,"layout5")
self.textLabel1_11 = QLabel(LayoutWidget_4,"textLabel1_11")
self.textLabel1_11.setSizePolicy(QSizePolicy(QSizePolicy.Expanding,QSizePolicy.Preferred,0,0,self.textLabel1_11.sizePolicy().hasHeightForWidth()))
layout5.addWidget(self.textLabel1_11)
self.dbType = QComboBox(0,LayoutWidget_4,"dbType")
self.dbType.setSizePolicy(QSizePolicy(QSizePolicy.Expanding,QSizePolicy.Fixed,0,0,self.dbType.sizePolicy().hasHeightForWidth()))
layout5.addWidget(self.dbType)
Database_layout.addLayout(layout5,0,0)
self.tabWidget.insertTab(self.Widget8,QString.fromLatin1(""))
self.Widget9 = QWidget(self.tabWidget,"Widget9")
LayoutWidget_6 = QWidget(self.Widget9,"layout9")
LayoutWidget_6.setGeometry(QRect(9,19,294,132))
layout9 = QGridLayout(LayoutWidget_6,1,1,6,6,"layout9")
self.unameEdit = QLineEdit(LayoutWidget_6,"unameEdit")
layout9.addMultiCellWidget(self.unameEdit,0,0,1,3)
self.textLabel1_5 = QLabel(LayoutWidget_6,"textLabel1_5")
layout9.addMultiCellWidget(self.textLabel1_5,3,3,0,1)
self.langCombo = QComboBox(0,LayoutWidget_6,"langCombo")
layout9.addMultiCellWidget(self.langCombo,3,3,2,3)
self.textLabel5 = QLabel(LayoutWidget_6,"textLabel5")
layout9.addWidget(self.textLabel5,1,0)
self.textLabel2_3 = QLabel(LayoutWidget_6,"textLabel2_3")
layout9.addMultiCellWidget(self.textLabel2_3,2,2,0,2)
self.textLabel2_2 = QLabel(LayoutWidget_6,"textLabel2_2")
layout9.addWidget(self.textLabel2_2,0,0)
self.editorEdit = QLineEdit(LayoutWidget_6,"editorEdit")
layout9.addMultiCellWidget(self.editorEdit,1,1,1,3)
self.pdfEdit = QLineEdit(LayoutWidget_6,"pdfEdit")
layout9.addWidget(self.pdfEdit,2,3)
self.tabWidget.insertTab(self.Widget9,QString.fromLatin1(""))
self.TabPage = QWidget(self.tabWidget,"TabPage")
self.line1 = QFrame(self.TabPage,"line1")
self.line1.setGeometry(QRect(289,34,20,320))
self.line1.setFrameShape(QFrame.VLine)
self.line1.setFrameShadow(QFrame.Sunken)
self.line1.setLineWidth(3)
self.line1.setFrameShape(QFrame.VLine)
LayoutWidget_7 = QWidget(self.TabPage,"layout14")
LayoutWidget_7.setGeometry(QRect(0,10,280,350))
layout14 = QVBoxLayout(LayoutWidget_7,6,6,"layout14")
self.textLabel5_2 = QLabel(LayoutWidget_7,"textLabel5_2")
layout14.addWidget(self.textLabel5_2)
self.textEdit1 = QTextEdit(LayoutWidget_7,"textEdit1")
layout14.addWidget(self.textEdit1)
LayoutWidget_8 = QWidget(self.TabPage,"layout18")
LayoutWidget_8.setGeometry(QRect(320,10,200,349))
layout18 = QVBoxLayout(LayoutWidget_8,6,6,"layout18")
layout16 = QVBoxLayout(None,0,6,"layout16")
layout11 = QVBoxLayout(None,0,6,"layout11")
self.textLabel1_3 = QLabel(LayoutWidget_8,"textLabel1_3")
self.textLabel1_3.setAlignment(QLabel.AlignCenter)
layout11.addWidget(self.textLabel1_3)
self.dbBackup = QPushButton(LayoutWidget_8,"dbBackup")
self.dbBackup.setEnabled(0)
layout11.addWidget(self.dbBackup)
self.dbInfo = QPushButton(LayoutWidget_8,"dbInfo")
self.dbInfo.setEnabled(0)
layout11.addWidget(self.dbInfo)
layout16.addLayout(layout11)
self.line2 = QFrame(LayoutWidget_8,"line2")
self.line2.setFrameShape(QFrame.HLine)
self.line2.setFrameShadow(QFrame.Sunken)
self.line2.setLineWidth(2)
self.line2.setFrameShape(QFrame.HLine)
layout16.addWidget(self.line2)
layout15 = QVBoxLayout(None,0,6,"layout15")
self.textLabel1_4 = QLabel(LayoutWidget_8,"textLabel1_4")
self.textLabel1_4.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Preferred,0,0,self.textLabel1_4.sizePolicy().hasHeightForWidth()))
self.textLabel1_4.setMargin(0)
self.textLabel1_4.setAlignment(QLabel.AlignCenter)
layout15.addWidget(self.textLabel1_4)
self.repOpen = QPushButton(LayoutWidget_8,"repOpen")
layout15.addWidget(self.repOpen)
layout16.addLayout(layout15)
layout18.addLayout(layout16)
spacer6 = QSpacerItem(20,170,QSizePolicy.Minimum,QSizePolicy.Expanding)
layout18.addItem(spacer6)
self.tabWidget.insertTab(self.TabPage,QString.fromLatin1(""))
self.visPage = QWidget(self.tabWidget,"visPage")
LayoutWidget_9 = QWidget(self.visPage,"layout24")
LayoutWidget_9.setGeometry(QRect(0,279,530,71))
layout24 = QHBoxLayout(LayoutWidget_9,6,6,"layout24")
layout23 = QVBoxLayout(None,0,6,"layout23")
self.textLabel1_9 = QLabel(LayoutWidget_9,"textLabel1_9")
self.textLabel1_9.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_9.sizePolicy().hasHeightForWidth()))
layout23.addWidget(self.textLabel1_9)
self.consensusButton = QPushButton(LayoutWidget_9,"consensusButton")
self.consensusButton.setEnabled(0)
layout23.addWidget(self.consensusButton)
layout24.addLayout(layout23)
spacer8 = QSpacerItem(260,20,QSizePolicy.Expanding,QSizePolicy.Minimum)
layout24.addItem(spacer8)
LayoutWidget_10 = QWidget(self.visPage,"layout20")
LayoutWidget_10.setGeometry(QRect(0,10,265,263))
layout20 = QVBoxLayout(LayoutWidget_10,6,6,"layout20")
self.textLabel1_7 = QLabel(LayoutWidget_10,"textLabel1_7")
self.textLabel1_7.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_7.sizePolicy().hasHeightForWidth()))
layout20.addWidget(self.textLabel1_7)
self.tableList = QComboBox(0,LayoutWidget_10,"tableList")
layout20.addWidget(self.tableList)
self.textLabel1_10 = QLabel(LayoutWidget_10,"textLabel1_10")
self.textLabel1_10.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_10.sizePolicy().hasHeightForWidth()))
layout20.addWidget(self.textLabel1_10)
self.variableList = QComboBox(0,LayoutWidget_10,"variableList")
layout20.addWidget(self.variableList)
self.textLabel2_4 = QLabel(LayoutWidget_10,"textLabel2_4")
self.textLabel2_4.setEnabled(1)
self.textLabel2_4.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel2_4.sizePolicy().hasHeightForWidth()))
layout20.addWidget(self.textLabel2_4)
self.mapList = QComboBox(0,LayoutWidget_10,"mapList")
self.mapList.setEnabled(1)
layout20.addWidget(self.mapList)
LayoutWidget_11 = QWidget(self.visPage,"layout19")
LayoutWidget_11.setGeometry(QRect(272,11,260,261))
layout19 = QVBoxLayout(LayoutWidget_11,6,6,"layout19")
self.dbscanButton = QPushButton(LayoutWidget_11,"dbscanButton")
layout19.addWidget(self.dbscanButton)
self.textLabel1_8 = QLabel(LayoutWidget_11,"textLabel1_8")
self.textLabel1_8.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_8.sizePolicy().hasHeightForWidth()))
layout19.addWidget(self.textLabel1_8)
self.rateSpinBox = QSpinBox(LayoutWidget_11,"rateSpinBox")
self.rateSpinBox.setMinValue(20)
layout19.addWidget(self.rateSpinBox)
spacer7 = QSpacerItem(20,90,QSizePolicy.Minimum,QSizePolicy.Expanding)
layout19.addItem(spacer7)
self.playButton_2D = QPushButton(LayoutWidget_11,"playButton_2D")
self.playButton_2D.setEnabled(0)
layout19.addWidget(self.playButton_2D)
self.playButton = QPushButton(LayoutWidget_11,"playButton")
layout19.addWidget(self.playButton)
self.tabWidget.insertTab(self.visPage,QString.fromLatin1(""))
self.languageChange()
self.resize(QSize(560,480).expandedTo(self.minimumSizeHint()))
self.clearWState(Qt.WState_Polished)
def languageChange(self):
self.setCaption(self.__tr("Epigrass Control Panel"))
self.textLabel1_6.setText(self.__tr("Progress:"))
QToolTip.add(self.stepLCD,self.__tr("Simulation step"))
self.buttonHelp.setText(self.__tr("&Help"))
self.buttonHelp.setAccel(QKeySequence(self.__tr("F1")))
QToolTip.add(self.buttonHelp,self.__tr("Click here to open the userguide in the web browser"))
self.buttonRun.setText(self.__tr("&Run"))
self.buttonRun.setAccel(QKeySequence(self.__tr("Alt+R")))
QToolTip.add(self.buttonRun,self.__tr("Click here to start your simulation"))
self.buttonExit.setText(self.__tr("&Exit"))
self.buttonExit.setAccel(QKeySequence(self.__tr("Alt+E")))
QToolTip.add(self.buttonExit,self.__tr("Click here to leave Epigrass"))
QToolTip.add(self.tabWidget,QString.null)
self.modSpec.setTitle(self.__tr("Model Specification"))
self.chooseButton.setText(self.__tr("Choose"))
self.textLabel1.setText(self.__tr("Script Name:"))
QToolTip.add(self.scriptNameEdit,self.__tr("write the name of the your script or press the choose button on the right to select one."))
self.editButton.setText(self.__tr("Edit"))
self.dbSpecGroupBox.setTitle(self.__tr("Database Specification"))
self.textLabel2.setText(self.__tr("Host:"))
self.portEdit.setText(self.__tr("3306"))
QToolTip.add(self.portEdit,self.__tr("Enter the port the server listens to."))
self.textLabel3.setText(self.__tr("Port:"))
QToolTip.add(self.pwEdit,self.__tr("Database password for the userid entered"))
self.textLabel1_2.setText(self.__tr("Password:"))
self.textLabel4.setText(self.__tr("Userid:"))
self.hostnEdit.setText(self.__tr("localhost"))
QToolTip.add(self.hostnEdit,self.__tr("This is the url of your database server."))
QToolTip.add(self.uidEdit,self.__tr("This is the userid for accessing the database server"))
self.textLabel1_11.setText(self.__tr("Database type:"))
self.dbType.clear()
self.dbType.insertItem(self.__tr("MySQL"))
self.dbType.insertItem(self.__tr("SQLite"))
self.dbType.insertItem(self.__tr("CSV"))
self.dbType.setCurrentItem(1)
QToolTip.add(self.dbType,self.__tr("Select your database type"))
self.tabWidget.changeTab(self.Widget8,self.__tr("Run Options"))
QToolTip.add(self.unameEdit,self.__tr("Enter your full name. This will be added to the report."))
self.textLabel1_5.setText(self.__tr("Language"))
self.langCombo.clear()
self.langCombo.insertItem(self.__tr("English"))
self.langCombo.insertItem(self.__tr("Brazilian portuguese"))
self.langCombo.insertItem(self.__tr("French"))
QToolTip.add(self.langCombo,self.__tr("Select the language for the GUI"))
self.textLabel5.setText(self.__tr("Editor"))
self.textLabel2_3.setText(self.__tr("PDF Viewer"))
self.textLabel2_2.setText(self.__tr("Name"))
QToolTip.add(self.editorEdit,self.__tr("Enter your preferred text editor"))
self.pdfEdit.setText(QString.null)
QToolTip.add(self.pdfEdit,self.__tr("Enter the name of your preferred PDF viewer"))
self.tabWidget.changeTab(self.Widget9,self.__tr("Settings"))
self.textLabel5_2.setText(self.__tr("Simulation Status"))
self.textLabel1_3.setText(self.__tr("Database"))
self.dbBackup.setText(self.__tr("Backup"))
QToolTip.add(self.dbBackup,self.__tr("Click here to backup the epigrass database "))
self.dbInfo.setText(self.__tr("Info"))
QToolTip.add(self.dbInfo,self.__tr("Click here for a short description of the epigrass database"))
self.textLabel1_4.setText(self.__tr("Report"))
self.repOpen.setText(self.__tr("Open"))
self.tabWidget.changeTab(self.TabPage,self.__tr("Utilities"))
self.textLabel1_9.setText(self.__tr("Spread Trees"))
self.consensusButton.setText(self.__tr("Consensus Tree"))
QToolTip.add(self.consensusButton,self.__tr("Select a directory with tree-files to build consensus on."))
self.textLabel1_7.setText(self.__tr("Simulations stored:"))
QToolTip.add(self.tableList,self.__tr("Select a database stored simulation"))
self.textLabel1_10.setText(self.__tr("Variable to display:"))
QToolTip.add(self.variableList,self.__tr("Select a variable to display in the animation"))
self.textLabel2_4.setText(self.__tr("Maps available:"))
self.mapList.clear()
self.mapList.insertItem(self.__tr("No map"))
QToolTip.add(self.mapList,self.__tr("Select a map"))
self.dbscanButton.setText(self.__tr("Scan DB"))
self.textLabel1_8.setText(self.__tr("Animation rate"))
self.playButton_2D.setText(self.__tr("Start 2D animation"))
self.playButton.setText(self.__tr("Start 3D animation"))
self.tabWidget.changeTab(self.visPage,self.__tr("Visualization"))
def Main_layout_destroyed(self,a0):
print "MainPanel.Main_layout_destroyed(QObject*): Not implemented yet"
def __tr(self,s,c = None):
return qApp.translate("MainPanel",s,c)
if __name__ == "__main__":
a = QApplication(sys.argv)
QObject.connect(a,SIGNAL("lastWindowClosed()"),a,SLOT("quit()"))
w = MainPanel()
a.setMainWidget(w)
w.show()
a.exec_loop()
epigrass-2.4.7/Epigrass/cpanel.py.bak 0000664 0000000 0000000 00000051331 12720633740 017435 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file '/home/flavio/Documents/Projetos/Epigrass/Epigrass-devel/cpanel.ui'
#
# Created: Qui Jun 28 18:44:11 2007
# by: The PyQt User Interface Compiler (pyuic) 3.17
#
# WARNING! All changes made in this file will be lost!
import sys
from qt import *
image0_data = \
"\x89\x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d" \
"\x49\x48\x44\x52\x00\x00\x00\x20\x00\x00\x00\x20" \
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"\x30\xd7\x29\xbb\xe2\xd8\xed\x46\xf4\x8b\x8f\x15" \
"\x74\xeb\xf7\x09\x2c\x49\xf5\x7d\xcb\x80\x93\xf4" \
"\xd9\x00\x00\x00\x00\x49\x45\x4e\x44\xae\x42\x60" \
"\x82"
class MainPanel(QWidget):
def __init__(self,parent = None,name = None,fl = 0):
QWidget.__init__(self,parent,name,fl)
self.image0 = QPixmap()
self.image0.loadFromData(image0_data,"PNG")
if not name:
self.setName("MainPanel")
self.setSizePolicy(QSizePolicy(QSizePolicy.Expanding,QSizePolicy.Expanding,0,0,self.sizePolicy().hasHeightForWidth()))
self.setMinimumSize(QSize(560,480))
self.setIcon(self.image0)
LayoutWidget = QWidget(self,"progress_Layout")
LayoutWidget.setGeometry(QRect(11,415,538,25))
progress_Layout = QHBoxLayout(LayoutWidget,6,6,"progress_Layout")
self.textLabel1_6 = QLabel(LayoutWidget,"textLabel1_6")
self.textLabel1_6.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Fixed,0,0,self.textLabel1_6.sizePolicy().hasHeightForWidth()))
progress_Layout.addWidget(self.textLabel1_6)
self.stepLCD = QLCDNumber(LayoutWidget,"stepLCD")
self.stepLCD.setSizePolicy(QSizePolicy(QSizePolicy.Minimum,QSizePolicy.Fixed,0,0,self.stepLCD.sizePolicy().hasHeightForWidth()))
progress_Layout.addWidget(self.stepLCD)
LayoutWidget_2 = QWidget(self,"Run_Layout")
LayoutWidget_2.setGeometry(QRect(11,442,538,32))
Run_Layout = QHBoxLayout(LayoutWidget_2,0,6,"Run_Layout")
self.buttonHelp = QPushButton(LayoutWidget_2,"buttonHelp")
self.buttonHelp.setAutoDefault(1)
Run_Layout.addWidget(self.buttonHelp)
Horizontal_Spacing2 = QSpacerItem(20,20,QSizePolicy.Expanding,QSizePolicy.Minimum)
Run_Layout.addItem(Horizontal_Spacing2)
self.buttonRun = QPushButton(LayoutWidget_2,"buttonRun")
self.buttonRun.setAutoDefault(1)
self.buttonRun.setDefault(1)
Run_Layout.addWidget(self.buttonRun)
self.buttonExit = QPushButton(LayoutWidget_2,"buttonExit")
self.buttonExit.setAutoDefault(1)
Run_Layout.addWidget(self.buttonExit)
self.tabWidget = QTabWidget(self,"tabWidget")
self.tabWidget.setEnabled(1)
self.tabWidget.setGeometry(QRect(11,6,538,407))
self.tabWidget.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.MinimumExpanding,0,0,self.tabWidget.sizePolicy().hasHeightForWidth()))
self.Widget8 = QWidget(self.tabWidget,"Widget8")
self.splitter6 = QSplitter(self.Widget8,"splitter6")
self.splitter6.setGeometry(QRect(10,0,520,360))
self.splitter6.setOrientation(QSplitter.Vertical)
self.modSpec = QGroupBox(self.splitter6,"modSpec")
self.modSpec.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.MinimumExpanding,0,0,self.modSpec.sizePolicy().hasHeightForWidth()))
self.modSpec.setMinimumSize(QSize(518,80))
LayoutWidget_3 = QWidget(self.modSpec,"layout7")
LayoutWidget_3.setGeometry(QRect(10,20,500,60))
layout7 = QGridLayout(LayoutWidget_3,1,1,6,6,"layout7")
self.chooseButton = QPushButton(LayoutWidget_3,"chooseButton")
layout7.addWidget(self.chooseButton,1,2)
self.textLabel1 = QLabel(LayoutWidget_3,"textLabel1")
layout7.addWidget(self.textLabel1,0,0)
spacer4 = QSpacerItem(370,20,QSizePolicy.Expanding,QSizePolicy.Minimum)
layout7.addMultiCell(spacer4,0,0,1,3)
self.scriptNameEdit = QLineEdit(LayoutWidget_3,"scriptNameEdit")
self.scriptNameEdit.setMargin(1)
layout7.addMultiCellWidget(self.scriptNameEdit,1,1,0,1)
self.editButton = QPushButton(LayoutWidget_3,"editButton")
layout7.addWidget(self.editButton,1,3)
LayoutWidget_4 = QWidget(self.splitter6,"Database_layout")
Database_layout = QGridLayout(LayoutWidget_4,1,1,6,6,"Database_layout")
spacer3 = QSpacerItem(20,100,QSizePolicy.Minimum,QSizePolicy.Expanding)
Database_layout.addItem(spacer3,1,0)
self.dbSpecGroupBox = QGroupBox(LayoutWidget_4,"dbSpecGroupBox")
self.dbSpecGroupBox.setEnabled(0)
self.dbSpecGroupBox.setSizePolicy(QSizePolicy(QSizePolicy.Expanding,QSizePolicy.MinimumExpanding,0,0,self.dbSpecGroupBox.sizePolicy().hasHeightForWidth()))
LayoutWidget_5 = QWidget(self.dbSpecGroupBox,"layout7")
LayoutWidget_5.setGeometry(QRect(10,20,360,140))
layout7_2 = QGridLayout(LayoutWidget_5,1,1,6,6,"layout7_2")
self.textLabel2 = QLabel(LayoutWidget_5,"textLabel2")
self.textLabel2.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Fixed,0,0,self.textLabel2.sizePolicy().hasHeightForWidth()))
layout7_2.addWidget(self.textLabel2,0,0)
self.portEdit = QLineEdit(LayoutWidget_5,"portEdit")
layout7_2.addWidget(self.portEdit,1,1)
self.textLabel3 = QLabel(LayoutWidget_5,"textLabel3")
self.textLabel3.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Fixed,0,0,self.textLabel3.sizePolicy().hasHeightForWidth()))
layout7_2.addWidget(self.textLabel3,0,1)
self.pwEdit = QLineEdit(LayoutWidget_5,"pwEdit")
self.pwEdit.setEchoMode(QLineEdit.Password)
layout7_2.addWidget(self.pwEdit,3,1)
self.textLabel1_2 = QLabel(LayoutWidget_5,"textLabel1_2")
self.textLabel1_2.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_2.sizePolicy().hasHeightForWidth()))
layout7_2.addWidget(self.textLabel1_2,2,1)
self.textLabel4 = QLabel(LayoutWidget_5,"textLabel4")
self.textLabel4.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel4.sizePolicy().hasHeightForWidth()))
layout7_2.addWidget(self.textLabel4,2,0)
self.hostnEdit = QLineEdit(LayoutWidget_5,"hostnEdit")
layout7_2.addWidget(self.hostnEdit,1,0)
self.uidEdit = QLineEdit(LayoutWidget_5,"uidEdit")
layout7_2.addWidget(self.uidEdit,3,0)
Database_layout.addMultiCellWidget(self.dbSpecGroupBox,0,1,1,1)
layout5 = QVBoxLayout(None,0,6,"layout5")
self.textLabel1_11 = QLabel(LayoutWidget_4,"textLabel1_11")
self.textLabel1_11.setSizePolicy(QSizePolicy(QSizePolicy.Expanding,QSizePolicy.Preferred,0,0,self.textLabel1_11.sizePolicy().hasHeightForWidth()))
layout5.addWidget(self.textLabel1_11)
self.dbType = QComboBox(0,LayoutWidget_4,"dbType")
self.dbType.setSizePolicy(QSizePolicy(QSizePolicy.Expanding,QSizePolicy.Fixed,0,0,self.dbType.sizePolicy().hasHeightForWidth()))
layout5.addWidget(self.dbType)
Database_layout.addLayout(layout5,0,0)
self.tabWidget.insertTab(self.Widget8,QString.fromLatin1(""))
self.Widget9 = QWidget(self.tabWidget,"Widget9")
LayoutWidget_6 = QWidget(self.Widget9,"layout9")
LayoutWidget_6.setGeometry(QRect(9,19,294,132))
layout9 = QGridLayout(LayoutWidget_6,1,1,6,6,"layout9")
self.unameEdit = QLineEdit(LayoutWidget_6,"unameEdit")
layout9.addMultiCellWidget(self.unameEdit,0,0,1,3)
self.textLabel1_5 = QLabel(LayoutWidget_6,"textLabel1_5")
layout9.addMultiCellWidget(self.textLabel1_5,3,3,0,1)
self.langCombo = QComboBox(0,LayoutWidget_6,"langCombo")
layout9.addMultiCellWidget(self.langCombo,3,3,2,3)
self.textLabel5 = QLabel(LayoutWidget_6,"textLabel5")
layout9.addWidget(self.textLabel5,1,0)
self.textLabel2_3 = QLabel(LayoutWidget_6,"textLabel2_3")
layout9.addMultiCellWidget(self.textLabel2_3,2,2,0,2)
self.textLabel2_2 = QLabel(LayoutWidget_6,"textLabel2_2")
layout9.addWidget(self.textLabel2_2,0,0)
self.editorEdit = QLineEdit(LayoutWidget_6,"editorEdit")
layout9.addMultiCellWidget(self.editorEdit,1,1,1,3)
self.pdfEdit = QLineEdit(LayoutWidget_6,"pdfEdit")
layout9.addWidget(self.pdfEdit,2,3)
self.tabWidget.insertTab(self.Widget9,QString.fromLatin1(""))
self.TabPage = QWidget(self.tabWidget,"TabPage")
self.line1 = QFrame(self.TabPage,"line1")
self.line1.setGeometry(QRect(289,34,20,320))
self.line1.setFrameShape(QFrame.VLine)
self.line1.setFrameShadow(QFrame.Sunken)
self.line1.setLineWidth(3)
self.line1.setFrameShape(QFrame.VLine)
LayoutWidget_7 = QWidget(self.TabPage,"layout14")
LayoutWidget_7.setGeometry(QRect(0,10,280,350))
layout14 = QVBoxLayout(LayoutWidget_7,6,6,"layout14")
self.textLabel5_2 = QLabel(LayoutWidget_7,"textLabel5_2")
layout14.addWidget(self.textLabel5_2)
self.textEdit1 = QTextEdit(LayoutWidget_7,"textEdit1")
layout14.addWidget(self.textEdit1)
LayoutWidget_8 = QWidget(self.TabPage,"layout18")
LayoutWidget_8.setGeometry(QRect(320,10,200,349))
layout18 = QVBoxLayout(LayoutWidget_8,6,6,"layout18")
layout16 = QVBoxLayout(None,0,6,"layout16")
layout11 = QVBoxLayout(None,0,6,"layout11")
self.textLabel1_3 = QLabel(LayoutWidget_8,"textLabel1_3")
self.textLabel1_3.setAlignment(QLabel.AlignCenter)
layout11.addWidget(self.textLabel1_3)
self.dbBackup = QPushButton(LayoutWidget_8,"dbBackup")
self.dbBackup.setEnabled(0)
layout11.addWidget(self.dbBackup)
self.dbInfo = QPushButton(LayoutWidget_8,"dbInfo")
self.dbInfo.setEnabled(0)
layout11.addWidget(self.dbInfo)
layout16.addLayout(layout11)
self.line2 = QFrame(LayoutWidget_8,"line2")
self.line2.setFrameShape(QFrame.HLine)
self.line2.setFrameShadow(QFrame.Sunken)
self.line2.setLineWidth(2)
self.line2.setFrameShape(QFrame.HLine)
layout16.addWidget(self.line2)
layout15 = QVBoxLayout(None,0,6,"layout15")
self.textLabel1_4 = QLabel(LayoutWidget_8,"textLabel1_4")
self.textLabel1_4.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding,QSizePolicy.Preferred,0,0,self.textLabel1_4.sizePolicy().hasHeightForWidth()))
self.textLabel1_4.setMargin(0)
self.textLabel1_4.setAlignment(QLabel.AlignCenter)
layout15.addWidget(self.textLabel1_4)
self.repOpen = QPushButton(LayoutWidget_8,"repOpen")
layout15.addWidget(self.repOpen)
layout16.addLayout(layout15)
layout18.addLayout(layout16)
spacer6 = QSpacerItem(20,170,QSizePolicy.Minimum,QSizePolicy.Expanding)
layout18.addItem(spacer6)
self.tabWidget.insertTab(self.TabPage,QString.fromLatin1(""))
self.visPage = QWidget(self.tabWidget,"visPage")
LayoutWidget_9 = QWidget(self.visPage,"layout24")
LayoutWidget_9.setGeometry(QRect(0,279,530,71))
layout24 = QHBoxLayout(LayoutWidget_9,6,6,"layout24")
layout23 = QVBoxLayout(None,0,6,"layout23")
self.textLabel1_9 = QLabel(LayoutWidget_9,"textLabel1_9")
self.textLabel1_9.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_9.sizePolicy().hasHeightForWidth()))
layout23.addWidget(self.textLabel1_9)
self.consensusButton = QPushButton(LayoutWidget_9,"consensusButton")
self.consensusButton.setEnabled(0)
layout23.addWidget(self.consensusButton)
layout24.addLayout(layout23)
spacer8 = QSpacerItem(260,20,QSizePolicy.Expanding,QSizePolicy.Minimum)
layout24.addItem(spacer8)
LayoutWidget_10 = QWidget(self.visPage,"layout20")
LayoutWidget_10.setGeometry(QRect(0,10,265,263))
layout20 = QVBoxLayout(LayoutWidget_10,6,6,"layout20")
self.textLabel1_7 = QLabel(LayoutWidget_10,"textLabel1_7")
self.textLabel1_7.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_7.sizePolicy().hasHeightForWidth()))
layout20.addWidget(self.textLabel1_7)
self.tableList = QComboBox(0,LayoutWidget_10,"tableList")
layout20.addWidget(self.tableList)
self.textLabel1_10 = QLabel(LayoutWidget_10,"textLabel1_10")
self.textLabel1_10.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_10.sizePolicy().hasHeightForWidth()))
layout20.addWidget(self.textLabel1_10)
self.variableList = QComboBox(0,LayoutWidget_10,"variableList")
layout20.addWidget(self.variableList)
self.textLabel2_4 = QLabel(LayoutWidget_10,"textLabel2_4")
self.textLabel2_4.setEnabled(1)
self.textLabel2_4.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel2_4.sizePolicy().hasHeightForWidth()))
layout20.addWidget(self.textLabel2_4)
self.mapList = QComboBox(0,LayoutWidget_10,"mapList")
self.mapList.setEnabled(1)
layout20.addWidget(self.mapList)
LayoutWidget_11 = QWidget(self.visPage,"layout19")
LayoutWidget_11.setGeometry(QRect(272,11,260,261))
layout19 = QVBoxLayout(LayoutWidget_11,6,6,"layout19")
self.dbscanButton = QPushButton(LayoutWidget_11,"dbscanButton")
layout19.addWidget(self.dbscanButton)
self.textLabel1_8 = QLabel(LayoutWidget_11,"textLabel1_8")
self.textLabel1_8.setSizePolicy(QSizePolicy(QSizePolicy.Preferred,QSizePolicy.Fixed,0,0,self.textLabel1_8.sizePolicy().hasHeightForWidth()))
layout19.addWidget(self.textLabel1_8)
self.rateSpinBox = QSpinBox(LayoutWidget_11,"rateSpinBox")
self.rateSpinBox.setMinValue(20)
layout19.addWidget(self.rateSpinBox)
spacer7 = QSpacerItem(20,90,QSizePolicy.Minimum,QSizePolicy.Expanding)
layout19.addItem(spacer7)
self.playButton_2D = QPushButton(LayoutWidget_11,"playButton_2D")
self.playButton_2D.setEnabled(0)
layout19.addWidget(self.playButton_2D)
self.playButton = QPushButton(LayoutWidget_11,"playButton")
layout19.addWidget(self.playButton)
self.tabWidget.insertTab(self.visPage,QString.fromLatin1(""))
self.languageChange()
self.resize(QSize(560,480).expandedTo(self.minimumSizeHint()))
self.clearWState(Qt.WState_Polished)
def languageChange(self):
self.setCaption(self.__tr("Epigrass Control Panel"))
self.textLabel1_6.setText(self.__tr("Progress:"))
QToolTip.add(self.stepLCD,self.__tr("Simulation step"))
self.buttonHelp.setText(self.__tr("&Help"))
self.buttonHelp.setAccel(QKeySequence(self.__tr("F1")))
QToolTip.add(self.buttonHelp,self.__tr("Click here to open the userguide in the web browser"))
self.buttonRun.setText(self.__tr("&Run"))
self.buttonRun.setAccel(QKeySequence(self.__tr("Alt+R")))
QToolTip.add(self.buttonRun,self.__tr("Click here to start your simulation"))
self.buttonExit.setText(self.__tr("&Exit"))
self.buttonExit.setAccel(QKeySequence(self.__tr("Alt+E")))
QToolTip.add(self.buttonExit,self.__tr("Click here to leave Epigrass"))
QToolTip.add(self.tabWidget,QString.null)
self.modSpec.setTitle(self.__tr("Model Specification"))
self.chooseButton.setText(self.__tr("Choose"))
self.textLabel1.setText(self.__tr("Script Name:"))
QToolTip.add(self.scriptNameEdit,self.__tr("write the name of the your script or press the choose button on the right to select one."))
self.editButton.setText(self.__tr("Edit"))
self.dbSpecGroupBox.setTitle(self.__tr("Database Specification"))
self.textLabel2.setText(self.__tr("Host:"))
self.portEdit.setText(self.__tr("3306"))
QToolTip.add(self.portEdit,self.__tr("Enter the port the server listens to."))
self.textLabel3.setText(self.__tr("Port:"))
QToolTip.add(self.pwEdit,self.__tr("Database password for the userid entered"))
self.textLabel1_2.setText(self.__tr("Password:"))
self.textLabel4.setText(self.__tr("Userid:"))
self.hostnEdit.setText(self.__tr("localhost"))
QToolTip.add(self.hostnEdit,self.__tr("This is the url of your database server."))
QToolTip.add(self.uidEdit,self.__tr("This is the userid for accessing the database server"))
self.textLabel1_11.setText(self.__tr("Database type:"))
self.dbType.clear()
self.dbType.insertItem(self.__tr("MySQL"))
self.dbType.insertItem(self.__tr("SQLite"))
self.dbType.insertItem(self.__tr("CSV"))
self.dbType.setCurrentItem(1)
QToolTip.add(self.dbType,self.__tr("Select your database type"))
self.tabWidget.changeTab(self.Widget8,self.__tr("Run Options"))
QToolTip.add(self.unameEdit,self.__tr("Enter your full name. This will be added to the report."))
self.textLabel1_5.setText(self.__tr("Language"))
self.langCombo.clear()
self.langCombo.insertItem(self.__tr("English"))
self.langCombo.insertItem(self.__tr("Brazilian portuguese"))
self.langCombo.insertItem(self.__tr("French"))
QToolTip.add(self.langCombo,self.__tr("Select the language for the GUI"))
self.textLabel5.setText(self.__tr("Editor"))
self.textLabel2_3.setText(self.__tr("PDF Viewer"))
self.textLabel2_2.setText(self.__tr("Name"))
QToolTip.add(self.editorEdit,self.__tr("Enter your preferred text editor"))
self.pdfEdit.setText(QString.null)
QToolTip.add(self.pdfEdit,self.__tr("Enter the name of your preferred PDF viewer"))
self.tabWidget.changeTab(self.Widget9,self.__tr("Settings"))
self.textLabel5_2.setText(self.__tr("Simulation Status"))
self.textLabel1_3.setText(self.__tr("Database"))
self.dbBackup.setText(self.__tr("Backup"))
QToolTip.add(self.dbBackup,self.__tr("Click here to backup the epigrass database "))
self.dbInfo.setText(self.__tr("Info"))
QToolTip.add(self.dbInfo,self.__tr("Click here for a short description of the epigrass database"))
self.textLabel1_4.setText(self.__tr("Report"))
self.repOpen.setText(self.__tr("Open"))
self.tabWidget.changeTab(self.TabPage,self.__tr("Utilities"))
self.textLabel1_9.setText(self.__tr("Spread Trees"))
self.consensusButton.setText(self.__tr("Consensus Tree"))
QToolTip.add(self.consensusButton,self.__tr("Select a directory with tree-files to build consensus on."))
self.textLabel1_7.setText(self.__tr("Simulations stored:"))
QToolTip.add(self.tableList,self.__tr("Select a database stored simulation"))
self.textLabel1_10.setText(self.__tr("Variable to display:"))
QToolTip.add(self.variableList,self.__tr("Select a variable to display in the animation"))
self.textLabel2_4.setText(self.__tr("Maps available:"))
self.mapList.clear()
self.mapList.insertItem(self.__tr("No map"))
QToolTip.add(self.mapList,self.__tr("Select a map"))
self.dbscanButton.setText(self.__tr("Scan DB"))
self.textLabel1_8.setText(self.__tr("Animation rate"))
self.playButton_2D.setText(self.__tr("Start 2D animation"))
self.playButton.setText(self.__tr("Start 3D animation"))
self.tabWidget.changeTab(self.visPage,self.__tr("Visualization"))
def Main_layout_destroyed(self,a0):
print "MainPanel.Main_layout_destroyed(QObject*): Not implemented yet"
def __tr(self,s,c = None):
return qApp.translate("MainPanel",s,c)
if __name__ == "__main__":
a = QApplication(sys.argv)
QObject.connect(a,SIGNAL("lastWindowClosed()"),a,SLOT("quit()"))
w = MainPanel()
a.setMainWidget(w)
w.show()
a.exec_loop()
epigrass-2.4.7/Epigrass/dataObject.py 0000664 0000000 0000000 00000003752 12772733376 017520 0 ustar root root 0000000 0000000 # Module for interacting with the database backend through SQLObject
# 10/2005 - Flavio Codeco Coelho
from sqlobject import *
import sys,os
#initialization data -- to be reset by calling module
##backend='mysql'
##user='root'
##pw='mysql'
##host='localhost'
##db='epigrass'
def Connect(backend, user, pw, host, port, db):
"""
Initializes the connection.
"""
db_filename = os.path.abspath('Epigrass.sqlite')
##if os.path.exists(db_filename):
## os.unlink(db_filename)
if backend == 'sqlite':
connection_string = 'sqlite:' + db_filename
elif backend == 'mysql':
connection_string = r'%s://%s:%s@%s:%s/%s'%(backend,user,pw,host,port,db)
elif backend == 'postgresql':
# TODO: check this connection string
connection_string = r'%s://%s:%s@%s:%s/%s'%(backend,user,pw,host,port,db)
else:
sys.exit('Invalid Database Backend specified: %s'%backend)
connection = connectionForURI(connection_string)
sqlhub.processConnection = connection.transaction()
class Site(SQLObject):
class sqlmeta:
name = 'site'
lazyUpdate = True
geocode = IntCol()
time = IntCol()
totpop = IntCol()
name = UnicodeCol()
lat = FloatCol()
longit = FloatCol()
class Edge(SQLObject):
#_table = 'site'+'e'
source_code = IntCol()
dest_code = IntCol()
time = IntCol()
ftheta = FloatCol()
btheta =FloatCol()
class sqlmeta:
name = 'site'+'e'
lazyUpdate = True
if __name__ =='__main__':
Connect('mysql','root','mysql','localhost', 3306, 'epigrass')
Site._table='testando'
Site.createTable()
Edge.createTable()
dicin={'geocode':0000000,'time':0,'name':'euheim','totpop':100,'lat':10.1,'longit':20.3}
for i in xrange(1):
pid = os.fork()
if pid:
pass
else:
Site(**dicin)
Site._connection.commit()
print "commit from process %d"%os.getpid()
sys.exit()
epigrass-2.4.7/Epigrass/dataObject.py.bak 0000664 0000000 0000000 00000003752 12720633740 020237 0 ustar root root 0000000 0000000 # Module for interacting with the database backend through SQLObject
# 10/2005 - Flavio Codeco Coelho
from sqlobject import *
import sys,os
#initialization data -- to be reset by calling module
##backend='mysql'
##user='root'
##pw='mysql'
##host='localhost'
##db='epigrass'
def Connect(backend, user, pw, host, port, db):
"""
Initializes the connection.
"""
db_filename = os.path.abspath('Epigrass.sqlite')
##if os.path.exists(db_filename):
## os.unlink(db_filename)
if backend == 'sqlite':
connection_string = 'sqlite:' + db_filename
elif backend == 'mysql':
connection_string = r'%s://%s:%s@%s:%s/%s'%(backend,user,pw,host,port,db)
elif backend == 'postgresql':
# TODO: check this connection string
connection_string = r'%s://%s:%s@%s:%s/%s'%(backend,user,pw,host,port,db)
else:
sys.exit('Invalid Database Backend specified: %s'%backend)
connection = connectionForURI(connection_string)
sqlhub.processConnection = connection.transaction()
class Site(SQLObject):
class sqlmeta:
name = 'site'
lazyUpdate = True
geocode = IntCol()
time = IntCol()
totpop = IntCol()
name = UnicodeCol()
lat = FloatCol()
longit = FloatCol()
class Edge(SQLObject):
#_table = 'site'+'e'
source_code = IntCol()
dest_code = IntCol()
time = IntCol()
ftheta = FloatCol()
btheta =FloatCol()
class sqlmeta:
name = 'site'+'e'
lazyUpdate = True
if __name__ =='__main__':
Connect('mysql','root','mysql','localhost', 3306, 'epigrass')
Site._table='testando'
Site.createTable()
Edge.createTable()
dicin={'geocode':0000000,'time':0,'name':'euheim','totpop':100,'lat':10.1,'longit':20.3}
for i in xrange(1):
pid = os.fork()
if pid:
pass
else:
Site(**dicin)
Site._connection.commit()
print "commit from process %d"%os.getpid()
sys.exit()
epigrass-2.4.7/Epigrass/data_io.py 0000664 0000000 0000000 00000015020 12772733376 017047 0 ustar root root 0000000 0000000 """
This module contains functions to read and write from ascii files, as well as to/from MySQL databases.
"""
from numpy import *
from string import *
import codecs
#from sqlobject import *
from difflib import *
import sys
def load(fname, sep=None):
"""
Load ASCII data from fname into an array and return the array.
The data must be regular, same number of values in every row
fname must be a filename.
optional argument sep must be set if the separators are not some kind of white space.
well suited for GRASS ascii site data.
Example usage::
x,y = load('test.dat') # data in two columns
X = load('test.dat') # a matrix of data
x = load('test.dat') # a single column of data
X = load('test.dat, sep = ',') # file is csv
"""
with codecs.open(fname,'r') as f:
linelist = f.readlines()
X = []
numCols = None
for line in linelist:
line = line.strip()
if not len(line): continue
row = [float(val) for val in line.split(str(sep))]
thisLen = len(row)
if numCols is not None and thisLen != numCols:
raise ValueError('All rows must have the same number of columns')
X.append(row)
X = array(X)
r,c = X.shape
if r==1 or c==1:
X.shape = max([r,c]),
return X
def loadData(fname,sep = ',', encoding='utf-8'):
"""
Loads from ascii files with separated values
and returns a list of lists.
"""
f = codecs.open(fname,'r',encoding='utf8')
linelist = f.readlines()
f.close()
sitelist = []
#numCols = None
for line in linelist:
line = line.strip()
#if not len(line): continue
row = [elmt.strip() for elmt in line.split(str(sep))]
#thisLen = len(row)
#if numCols is not None and thisLen != numCols:
# raise ValueError('All rows must have the same number of columns')
sitelist.append(row)
return sitelist
def queryDb(usr,passw,db,table, host='localhost',port=3306,sql=''):
"""
Fetch the contents of a table on a MySQL database
sql,usr,passw,db,table and host must be strings.
returns a tuple of tuples and a list of dictionaries.
"""
import MySQLdb
con = MySQLdb.connect(host=host, port=port, user=usr,passwd=passw, db=db)
Cursor = con.cursor()
#get column names
Cursor.execute('show columns from '+table)
cout = Cursor.fetchall()
cnames=[]
for i in cout:
cnames.append(i[0])
if sql == '':
sql = 'SELECT * FROM ' + table
Cursor.execute(sql)
results = Cursor.fetchall()
con.close()
res=[]
for i in results: #creates a list of dictionaries
res.append(dict([x for x in zip(cnames,i)]))
return res
def loadEdgeData(fname):
"""
"""
fname = 'antt2002TODOS.csv'
dados = loadData(fname ,',')
dicCity = queryDb('root','mysql','epigrass','localidades')
dados[0].append('codigo1')
dados[0].append('codigo2')
for i in xrange(1,len(dados)):
cidade1 = dados[i][1].lower() #word
UF1 = dados[i][2]
cidade2 = dados[i][3].lower() #word2
UF2 = dados[i][4]
ln1 = [x['NM_NOME'].lower() for x in dicCity if x['UF'] == UF1]
ld1 = [x for x in dicCity if x['UF'] == UF1]
mat = get_close_matches(cidade1,ln1,5)
if not mat:
dados[i].append('NA')
else:
geoc1 = [x['GEOCODIGO'] for x in ld1 if x['NM_NOME'].lower() == mat[0]]
#print i,mat[0]
try:
dados[i].append(geoc1[0])
except IndexError:
print 'No match for city name ', cidade1
sys.exit()
#print cidade1,UF1, mat
ln2 = [x['NM_NOME'].lower() for x in dicCity if x['UF'] == UF2]
ld2 = [x for x in dicCity if x['UF'] == UF2]
mat2 = get_close_matches(cidade2,ln2,5)
if not mat2:
dados[i].append('NA')
else:
geoc2 = [x['GEOCODIGO'] for x in ld2 if x['NM_NOME'].lower() == mat2[0]]
try:
dados[i].append(geoc2[0])
except IndexError:
print 'No match for city name ', cidade2
sys.exit()
#print cidade2,UF2, mat2
fout = open('edgesout.csv','w')
for i in dados:
for j in i:
fout.write(j+',')
fout.write('\n')
fout.close()
return dados
def getSiteFromGeo(fin=None,fout=None):
"""
Search the locality and census databases tables for codes in a file and creates a
sites file.
"""
if not fin:
fname = 'scodes.csv'
else:
fname = fin
f = open (fname, 'r')
codes = f.readlines()
dicCity = queryDb('root','mysql','epigrass','localidades')
dicTodos = queryDb('root','mysql','epigrass','universo')
sitios = ['latitude,longitude,localidade,populacao urb.,geocodigo\n']#header
x=0
for i in codes:
for j in dicCity:
#x+=1;print x
#print len(strip(i)),'g2: ',len(j['GEOCODIGO']),type(i), type(j['GEOCODIGO'])
if j['GEOCODIGO'] == strip(i):
line = j['MD_LATITUD']+','+j['MD_LONGITU']+','+j['NM_NOME']
for k in dicTodos:
if k['ID_'] == i[:6]:
line = line+','+str(k['V04'])+','+strip(i)+'\n'
sitios.append(line)
f.close()
#print sitios[0]
if not fout:
fout='sitios.csv'
outf = open(fout,'w')
outf.writelines(sitios)
outf.close()
def sitesToDb(fname,table,db='epigrass',usr='root',passw='mysql', host='localhost',port=3306):
"""
Creates a site table on a mysql db from a sites file (fname).
"""
import MySQLdb
try:
#now = time.asctime().replace(' ','_').replace(':','')
#table = #table+'_'+now
con = MySQLdb.connect(host=host, port=port, user=usr,passwd=passw, db=db)
Cursor = con.cursor()
sql = """CREATE TABLE %s(
`latitude` VARCHAR( 12 ) DEFAULT '0' NOT NULL ,
`longitude` VARCHAR( 12 ) DEFAULT '' NOT NULL,
`locality` VARCHAR(64),
`population` INT(11),
`geocodigo` INT(9)
);
""" % table
Cursor.execute(sql)
f = open(fname,'r')
listsites = f.readlines()
f.close()
sql2 = 'INSERT INTO %s' % table + ' VALUES(%s,%s,%s,%s,%s)'
for site in listsites:
values = tuple([strip(i) for i in site.split(',')])
Cursor.execute(sql2,values)
finally:
con.close()
epigrass-2.4.7/Epigrass/data_io.py.bak 0000664 0000000 0000000 00000015020 12720633740 017566 0 ustar root root 0000000 0000000 """
This module contains functions to read and write from ascii files, as well as to/from MySQL databases.
"""
from numpy import *
from string import *
import codecs
#from sqlobject import *
from difflib import *
import sys
def load(fname, sep=None):
"""
Load ASCII data from fname into an array and return the array.
The data must be regular, same number of values in every row
fname must be a filename.
optional argument sep must be set if the separators are not some kind of white space.
well suited for GRASS ascii site data.
Example usage::
x,y = load('test.dat') # data in two columns
X = load('test.dat') # a matrix of data
x = load('test.dat') # a single column of data
X = load('test.dat, sep = ',') # file is csv
"""
with codecs.open(fname,'r') as f:
linelist = f.readlines()
X = []
numCols = None
for line in linelist:
line = line.strip()
if not len(line): continue
row = [float(val) for val in line.split(str(sep))]
thisLen = len(row)
if numCols is not None and thisLen != numCols:
raise ValueError('All rows must have the same number of columns')
X.append(row)
X = array(X)
r,c = X.shape
if r==1 or c==1:
X.shape = max([r,c]),
return X
def loadData(fname,sep = ',', encoding='utf-8'):
"""
Loads from ascii files with separated values
and returns a list of lists.
"""
f = codecs.open(fname,'r',encoding='utf8')
linelist = f.readlines()
f.close()
sitelist = []
#numCols = None
for line in linelist:
line = line.strip()
#if not len(line): continue
row = [elmt.strip() for elmt in line.split(str(sep))]
#thisLen = len(row)
#if numCols is not None and thisLen != numCols:
# raise ValueError('All rows must have the same number of columns')
sitelist.append(row)
return sitelist
def queryDb(usr,passw,db,table, host='localhost',port=3306,sql=''):
"""
Fetch the contents of a table on a MySQL database
sql,usr,passw,db,table and host must be strings.
returns a tuple of tuples and a list of dictionaries.
"""
import MySQLdb
con = MySQLdb.connect(host=host, port=port, user=usr,passwd=passw, db=db)
Cursor = con.cursor()
#get column names
Cursor.execute('show columns from '+table)
cout = Cursor.fetchall()
cnames=[]
for i in cout:
cnames.append(i[0])
if sql == '':
sql = 'SELECT * FROM ' + table
Cursor.execute(sql)
results = Cursor.fetchall()
con.close()
res=[]
for i in results: #creates a list of dictionaries
res.append(dict([x for x in zip(cnames,i)]))
return res
def loadEdgeData(fname):
"""
"""
fname = 'antt2002TODOS.csv'
dados = loadData(fname ,',')
dicCity = queryDb('root','mysql','epigrass','localidades')
dados[0].append('codigo1')
dados[0].append('codigo2')
for i in xrange(1,len(dados)):
cidade1 = dados[i][1].lower() #word
UF1 = dados[i][2]
cidade2 = dados[i][3].lower() #word2
UF2 = dados[i][4]
ln1 = [x['NM_NOME'].lower() for x in dicCity if x['UF'] == UF1]
ld1 = [x for x in dicCity if x['UF'] == UF1]
mat = get_close_matches(cidade1,ln1,5)
if not mat:
dados[i].append('NA')
else:
geoc1 = [x['GEOCODIGO'] for x in ld1 if x['NM_NOME'].lower() == mat[0]]
#print i,mat[0]
try:
dados[i].append(geoc1[0])
except IndexError:
print 'No match for city name ', cidade1
sys.exit()
#print cidade1,UF1, mat
ln2 = [x['NM_NOME'].lower() for x in dicCity if x['UF'] == UF2]
ld2 = [x for x in dicCity if x['UF'] == UF2]
mat2 = get_close_matches(cidade2,ln2,5)
if not mat2:
dados[i].append('NA')
else:
geoc2 = [x['GEOCODIGO'] for x in ld2 if x['NM_NOME'].lower() == mat2[0]]
try:
dados[i].append(geoc2[0])
except IndexError:
print 'No match for city name ', cidade2
sys.exit()
#print cidade2,UF2, mat2
fout = open('edgesout.csv','w')
for i in dados:
for j in i:
fout.write(j+',')
fout.write('\n')
fout.close()
return dados
def getSiteFromGeo(fin=None,fout=None):
"""
Search the locality and census databases tables for codes in a file and creates a
sites file.
"""
if not fin:
fname = 'scodes.csv'
else:
fname = fin
f = open (fname, 'r')
codes = f.readlines()
dicCity = queryDb('root','mysql','epigrass','localidades')
dicTodos = queryDb('root','mysql','epigrass','universo')
sitios = ['latitude,longitude,localidade,populacao urb.,geocodigo\n']#header
x=0
for i in codes:
for j in dicCity:
#x+=1;print x
#print len(strip(i)),'g2: ',len(j['GEOCODIGO']),type(i), type(j['GEOCODIGO'])
if j['GEOCODIGO'] == strip(i):
line = j['MD_LATITUD']+','+j['MD_LONGITU']+','+j['NM_NOME']
for k in dicTodos:
if k['ID_'] == i[:6]:
line = line+','+str(k['V04'])+','+strip(i)+'\n'
sitios.append(line)
f.close()
#print sitios[0]
if not fout:
fout='sitios.csv'
outf = open(fout,'w')
outf.writelines(sitios)
outf.close()
def sitesToDb(fname,table,db='epigrass',usr='root',passw='mysql', host='localhost',port=3306):
"""
Creates a site table on a mysql db from a sites file (fname).
"""
import MySQLdb
try:
#now = time.asctime().replace(' ','_').replace(':','')
#table = #table+'_'+now
con = MySQLdb.connect(host=host, port=port, user=usr,passwd=passw, db=db)
Cursor = con.cursor()
sql = """CREATE TABLE %s(
`latitude` VARCHAR( 12 ) DEFAULT '0' NOT NULL ,
`longitude` VARCHAR( 12 ) DEFAULT '' NOT NULL,
`locality` VARCHAR(64),
`population` INT(11),
`geocodigo` INT(9)
);
""" % table
Cursor.execute(sql)
f = open(fname,'r')
listsites = f.readlines()
f.close()
sql2 = 'INSERT INTO %s' % table + ' VALUES(%s,%s,%s,%s,%s)'
for site in listsites:
values = tuple([strip(i) for i in site.split(',')])
Cursor.execute(sql2,values)
finally:
con.close()
epigrass-2.4.7/Epigrass/dgraph.py 0000775 0000000 0000000 00000116136 12772733376 016731 0 ustar root root 0000000 0000000 # ! /usr/bin/env python
"""
This module is a graph and map visualizing tool.
"""
import math
from osgeo import ogr
import threading
import itertools
import time, os, sys
from PyQt4 import Qt, QtCore, QtGui, QtOpenGL, Qwt5 as Qwt
from numpy import array, sqrt, average
from numpy.random import randint, uniform
from Ui_display import Ui_Form
from matplotlib import cm
from types import MethodType
from SimpleXMLRPCServer import SimpleXMLRPCServer
##import psyco
##psyco.full()
graphic_backend = "qt"
def keyPressEvent(self, event):
key = event.key()
if key == QtCore.Qt.Key_Up:
self.translate(0, -20)
elif key == QtCore.Qt.Key_Down:
self.translate(0, 20)
elif key == QtCore.Qt.Key_Left:
self.translate(-20, 0)
elif key == QtCore.Qt.Key_Right:
self.translate(20, 0)
elif key == QtCore.Qt.Key_Plus:
self.scaleView(1.2)
elif key == QtCore.Qt.Key_Minus:
self.scaleView(1 / 1.2)
elif key == QtCore.Qt.Key_Space or key == QtCore.Qt.Key_Enter:
for item in self.scene().items():
if isinstance(item, Polygon):
item.setPos(-150 + QtCore.qrand() % 300, -150 + QtCore.qrand() % 300)
else:
QtGui.QGraphicsView.keyPressEvent(self, event)
def wheelEvent(self, event):
self.scaleView(math.pow(2.0, -event.delta() / 240.0))
def scaleView(self, scaleFactor):
factor = self.matrix().scale(scaleFactor, scaleFactor).mapRect(QtCore.QRectF(0, 0, 1, 1)).width()
# if factor < 0.07 or factor > 1000000:
# return
self.scale(scaleFactor, scaleFactor)
def timerEvent(self, event):
pass
for node in self.nodes:
node.calculateForces()
itemsMoved = False
for node in self.nodes:
if node.advance():
itemsMoved = True
if not itemsMoved:
self.killTimer(self.timerId)
self.timerId = 0
def itemMoved(self):
if not self.timerId:
self.timerId = self.startTimer(1000 / 25)
def array_mag(a):
acc = 0
for value in a:
acc += value ** 2
return math.sqrt(acc)
def array_norm(a):
"""normalizes an array"""
mag = array_mag(a)
b = a.copy()
for i in xrange(len(a)):
b[i] = b[i] / mag
return b
def array_dot(a, b):
return sum([a[i] * b[i] for i in xrange(len(a))])
class MapWindow(QtGui.QWidget, Ui_Form):
'''
Map and Time-series window
'''
def __init__(self, G=None):
QtGui.QWidget.__init__(self, None)
self.Form = QtGui.QWidget()
self.setupUi(self.Form)
self.jet = cm.get_cmap("jet", 50) # colormap
self.timeseries = {}
self.arrivals = {}
self.colors = itertools.cycle(
[Qt.Qt.red, Qt.Qt.green, Qt.Qt.blue, Qt.Qt.cyan, Qt.Qt.magenta, Qt.Qt.yellow, Qt.Qt.black, Qt.Qt.darkCyan,
Qt.Qt.darkRed, Qt.Qt.darkGreen, Qt.Qt.darkBlue, Qt.Qt.darkMagenta, Qt.Qt.darkYellow])
self.setupQwtPlot()
self.step = 0
self.M = None # initialize map widget
# Configuring View
self.mapView.setViewportUpdateMode(QtGui.QGraphicsView.SmartViewportUpdate)
# Overloading event-handling methods for self.mapView
self.mapView.keyPressEvent = MethodType(keyPressEvent, self.mapView)
self.mapView.wheelEvent = MethodType(wheelEvent, self.mapView)
self.mapView.scaleView = MethodType(scaleView, self.mapView)
# connections
QtCore.QObject.connect(self.horizontalSlider, QtCore.SIGNAL("sliderReleased()"),
self.on_horizontalSlider_sliderMoved)
QtCore.QObject.connect(self.horizontalSlider, QtCore.SIGNAL("valueChanged()"),
self.on_horizontalSlider_valueChanged)
QtCore.QObject.connect(self.pushButton, QtCore.SIGNAL("released()"), self.replay)
QtCore.QObject.connect(self.splitter, QtCore.SIGNAL("splitterMoved()"), self.centerScene)
print hasattr(self, "showSumBox")
QtCore.QObject.connect(self.showSumBox, QtCore.SIGNAL("stateChanged(int)"), self.on_showSumBox_stateChanged)
# self.server = MapServer()
# self.server.map = self.M
# st = threading.Thread(target=self.server.start)
# st.start()
def setupQwtPlot(self):
"""
Sets up the time series plot
"""
# self.qwtPlot.setTitle('%s'%self.variable)
self.qwtPlot.setAxisTitle(Qwt.QwtPlot.xBottom, 'time')
# self.qwtPlot.setAxisTitle(Qwt.QwtPlot.yLeft, 'count')
self.qwtPlot.insertLegend(Qwt.QwtLegend(), Qwt.QwtPlot.RightLegend)
# Time marker
self.mX = Qwt.QwtPlotMarker()
self.mX.setLabel(Qwt.QwtText('t = '))
self.mX.setLabelAlignment(Qt.Qt.AlignRight | Qt.Qt.AlignTop)
self.mX.setLineStyle(Qwt.QwtPlotMarker.VLine)
self.mX.setXValue(0)
self.mX.attach(self.qwtPlot)
self.qwtPlot.replot()
def fill_nodel_list(self, pl):
"""
creates check boxes on the node list group box
pl is a list of polygons
"""
lo = self.nodeListLayout
pl.sort(key=lambda p: p.name) # adding sites in alphabetical order
for n in pl:
cb = QtGui.QCheckBox(self.scrollArea)
cb.setText(n.name)
QtCore.QObject.connect(cb, QtCore.SIGNAL("stateChanged(int)"), n.select)
cb.setToolTip(str(n.geocode))
lo.addWidget(cb)
# self.nodeGroupBox.setLayout(lo)
def add_global_ts_curve(self, scope="all"):
"""
Plots a time series which is the sum of all(scope="all") or
selected timeseries (scope="set")
"""
t = self.timeseries.keys()
t.sort()
data = [0] * len(self.timeseries)
if scope == "all":
name = "Total"
for k, v in self.timeseries.iteritems():
data[k] = sum(v.values())
# print v
elif scope == "Selected":
name = "Sum of Selected"
#TODO: fix this
# print data
curve = Qwt.QwtPlotCurve(name)
pen = Qt.QPen(Qt.Qt.gray)
pen.setStyle(4)
pen.setWidth(3)
curve.setPen(pen)
curve.attach(self.qwtPlot)
curve.setData(t, data)
self.globalCurve = curve
self.qwtPlot.replot()
def addTsCurve(self, gc, name):
"""
Plots a time series curve to the plot window
"""
data = [0] * len(self.timeseries)
for k, v in self.timeseries.iteritems():
data[k] = v[gc]
t = self.timeseries.keys()
t.sort()
curve = Qwt.QwtPlotCurve(name)
curve.setPen(Qt.QPen(self.colors.next()))
curve.attach(self.qwtPlot)
curve.setData(t, data)
self.M.polyDict[gc].curve = curve
def drawMap(self, filename, namefield, geocfield):
"""
Draws the map stored in the shapefile fname.
"""
#Setup the Map
self.M = Map(fname=filename, display=self, namefield=namefield, geocfield=geocfield)
# self.server.map = self.M
xmin, ymin = self.M.xmin, self.M.ymin
xmax, ymax = self.M.xmax, self.M.ymax
xxs = (xmax - xmin) * 1.1 #percentage of extra space
yxs = (ymax - ymin) * 1.1 #percentage of extra space
#calculating center of scene
xc = (xmax + xmin) / 2.
yc = (ymax + ymin) / 2.
self.mapView.scene = QtGui.QGraphicsScene(self.mapView)
#self.mapView.scene.setItemIndexMethod(QtGui.QGraphicsScene.NoIndex)
self.mapView.scene.setSceneRect(xmin, ymin, xxs, yxs)
#print self.mapView.scene.width(), self.mapView.scene.height()
self.mapView.fitInView(xmin, ymin, xxs, yxs)
self.mapView.setScene(self.mapView.scene)
self.mapView.updateSceneRect(self.mapView.scene.sceneRect())
self.mapView.centerOn(xc, yc)
#self.mapView.setViewport(QtOpenGL.QGLWidget())
self.mapView.setCacheMode(QtGui.QGraphicsView.CacheBackground)
self.mapView.setRenderHint(QtGui.QPainter.Antialiasing)
self.mapView.setTransformationAnchor(QtGui.QGraphicsView.AnchorUnderMouse)
self.mapView.setResizeAnchor(QtGui.QGraphicsView.AnchorViewCenter)
for p in self.M.polyList:
self.mapView.scene.addItem(p)
self.fill_nodel_list(self.M.polyList)
#self.scene.addText("%s,%s,%s,%s"%(xmin, xxs, ymin, yxs))
# self.polys = [item for item in self.mapView.scene.items() if isinstance(item, Polygon)]
#self.mapView.addGraph(self.polys)
self.mapView.setMinimumSize(300, 300)
#self.mapView.setWindowTitle(self.tr("Network View"))
scale_factor = self.mapView.width() / xxs
self.mapView.scale(scale_factor, scale_factor)
if self.showSumBox.isChecked():
self.add_global_ts_curve("all")
#print self.polys
def drawGraph(self, nlist, elist=[]):
"""
Draws a graph in the scene
nlist: is a lis of nodes in the format(x,y,geocode,name)
elist: is a list of edges described by tuples of indices to the first list.
"""
self.label.setText('Network View')
self.M = Graph(self)
self.mapView.timerId = 0
#Adding graph event handlers
self.mapView.itemMoved = MethodType(itemMoved, self.mapView)
self.mapView.timerEvent = MethodType(timerEvent, self.mapView)
self.mapView.scene = QtGui.QGraphicsScene(self.mapView)
npos = [(n[1], -n[2]) for n in nlist]
xmin, ymin = array(npos).min(axis=0)
xmax, ymax = array(npos).max(axis=0)
for n in nlist:
node = Node(self.M, n[0], n[3])
node.setPos(*(n[1], -n[2]))
node.size = max(xmax - xmin, ymax - ymin) / math.sqrt(len(nlist)) * 0.5
self.mapView.scene.addItem(node)
self.M.insertNode(node)
#print node.x(), node.y(), n.center[0], n.center[1]
self.mapView.nodes = self.M.nodes
for e in elist:
ed = Edge(self.M.nodes[int(e[0])], self.M.nodes[int(e[1])])
ed.arrowSize = max(xmax - xmin, ymax - ymin) / math.sqrt(len(nlist)) * 0.2
self.mapView.scene.addItem(ed)
self.M.insertEdge(ed)
self.xmax, self.xmin = xmax, xmin
self.ymax, self.ymin = ymax, ymin
self.centerScene()
def centerScene(self):
"""
Centers the scene and fits the specified rectangle to it
"""
ymax, ymin = self.ymax, self.ymin
xmax, xmin = self.xmax, self.xmin
xxs = (xmax - xmin) * 1.1 # percentage of extra space
yxs = (ymax - ymin) * 1.1 # percentage of extra space
#calculating center of scene
xc = (xmax + xmin) / 2.
yc = (ymax + ymin) / 2.
self.mapView.scene.setItemIndexMethod(QtGui.QGraphicsScene.NoIndex)
self.mapView.scene.setSceneRect(xmin, ymin, xxs, yxs)
# print self.mapView.scene.width(), self.mapView.scene.height()
self.mapView.fitInView(xmin, ymin, xxs, yxs)
self.mapView.setScene(self.mapView.scene)
self.mapView.updateSceneRect(self.mapView.scene.sceneRect())
self.mapView.centerOn(xc, yc)
scale_factor = self.mapView.width() / xxs
self.mapView.scale(scale_factor, scale_factor)
self.mapView.setCacheMode(QtGui.QGraphicsView.CacheBackground)
self.mapView.setRenderHint(QtGui.QPainter.Antialiasing)
self.mapView.setTransformationAnchor(QtGui.QGraphicsView.AnchorUnderMouse)
self.mapView.setResizeAnchor(QtGui.QGraphicsView.AnchorViewCenter)
def paintPols(self, datadict):
"""
Paint the polygons with the data from data dict
datadict is a dictionary of the form {geocode:value,...}
"""
if max(datadict.values()) > 1:
normw = max(datadict.values())
else:
normw = 1.
for gc, val in datadict.iteritems():
try:
val /= normw #normalize values if necessary
except TypeError as e:
print gc, val, datadict[gc], e
col = self.jet(val) # rgba list
gc = int(gc)
# print gc, type(gc)
if self.M.polyDict.has_key(gc):
self.M.polyDict[gc].fillColor = QtGui.QColor(int(col[0] * 255), int(col[1] * 255), int(col[2] * 255),
int(col[3] * 255))
self.M.polyDict[gc].update()
# else:
# print self.M.polyDict.values()
def replay(self):
"""
Replay the time series from beggining to end.
"""
rw = ReplayWorker(self.timeseries, self.arrivals)
def stop_replay():
rw.quit()
QtCore.QObject.connect(rw, QtCore.SIGNAL("drawStep"), self.drawStep)
QtCore.QObject.connect(rw, QtCore.SIGNAL("flash"), self.flashBorders)
QtCore.QObject.connect(self.pushButton_2, QtCore.SIGNAL("released()"), stop_replay)
rw.render()
def drawStep(self, step, datadict={}):
"""
Draws one timestep on the map
step: timestep number
datadict: dictionary geocode:value
"""
self.step = step
self.paintPols(datadict)
self.lcdNumber.display(step)
self.horizontalSlider.setValue(step)
self.timeseries[step] = datadict
def flashBorders(self, step, gclist=[]):
"""
Flash the borders to bright green to signal events
gclist: list of geocodes to be flashed
"""
self.arrivals[step] = gclist
for gc in gclist:
gc = int(gc)
self.M.polyDict[gc].lineColor = QtCore.Qt.green
self.M.polyDict[gc].update()
self.M.polyDict[gc].lineColor = QtCore.Qt.black
def show(self):
self.Form.show()
def on_horizontalSlider_valueChanged(self):
if self.horizontalSlider.isEnabled():
self.on_horizontalSlider_sliderMoved()
def on_horizontalSlider_sliderMoved(self):
"""
Handles updating the display on a slider move
"""
val = self.horizontalSlider.value()
self.lcdNumber.display(val)
self.step = val
self.drawStep(val, self.timeseries[val])
self.mX.setXValue(self.step)
self.mX.setLabel(Qwt.QwtText("t = %s" % self.step))
self.qwtPlot.replot()
# @QtCore.pyqtSignature("int")
def on_showSumBox_stateChanged(self, st):
"""
Handles adding/remove global timeseries curve
"""
if st:
# print "adding global series"
self.add_global_ts_curve()
else:
# print "removing global series"
self.globalCurve.detach()
self.qwtPlot.replot()
#BlackBox :-)
class BaseBox(object):
def __init__(self, *args, **kwargs):
for key in kwargs.keys():
self.__setattr__(key, kwargs[key])
BaseCylinder = BaseBox
#Short factory functions, so that callers don't have to care
#about which class is being used for visualization
def Node(*args, **kwargs):
if graphic_backend == "visual":
return VisualNode(*args, **kwargs)
elif graphic_backend == "qt":
return QtNode(*args, **kwargs)
else:
return BaseNode(*args, **kwargs)
def Edge(*args, **kwargs):
if graphic_backend == "visual":
return VisualEdge(*args, **kwargs)
elif graphic_backend == "qt":
return QtEdge(*args, **kwargs)
else:
return BaseRubberEdge(*args, **kwargs)
def Graph(*args, **kwargs):
if graphic_backend == "visual":
return VisualGraph(*args, **kwargs)
elif graphic_backend == "qt":
return QtGraph(*args, **kwargs)
else:
return BaseGraph(*args, **kwargs)
def Map(*args, **kwargs):
if graphic_backend == "visual":
return VisualMap(*args, **kwargs)
elif graphic_backend == "qt":
return QtMap(*args, **kwargs)
else:
return BaseGraph(*args, **kwargs)
rho = 23.8732414637845 # for backwardscompatibility
class BaseNode(QtGui.QGraphicsItem):
Type = QtGui.QGraphicsItem.UserType + 1
def __init__(self, graphWidget):
QtGui.QGraphicsItem.__init__(self)
self.graph = graphWidget
self.edgeList = []
self.newPos = QtCore.QPointF()
# self.setFlag(QtGui.QGraphicsItem.ItemIsMovable)
self.setZValue(1)
self.neighbors = []
def type(self):
return Node.Type
def addEdge(self, edge):
self.edgeList.append(edge)
edge.adjust()
def edges(self):
return self.edgeList
def calculateForces(self):
if not self.scene() or self.scene().mouseGrabberItem() is self:
self.newPos = self.pos()
return
# Sum up all forces pushing this item away.
xvel = 0.0
yvel = 0.0
# for item in self.graph.nodes:
# line = QtCore.QLineF(self.mapFromItem(item, 0, 0), QtCore.QPointF(0, 0))
# dx = line.dx()
# dy = line.dy()
# l = 2.0 * (dx * dx + dy * dy)
# if l > 0:
# xvel += (dx * 150.0) / l
# yvel += (dy * 150.0) / l
#
# # Now subtract all forces pulling items together.
# weight = (len(self.edgeList) + 1) * 10.0
# for edge in self.edgeList:
# if edge.sourceNode() is self:
# pos = self.mapFromItem(edge.destNode(), 0, 0)
# else:
# pos = self.mapFromItem(edge.sourceNode(), 0, 0)
# xvel += pos.x() / weight
# yvel += pos.y() / weight
#
# if QtCore.qAbs(xvel) < 0.1 and QtCore.qAbs(yvel) < 0.1:
# xvel = yvel = 0.0
# sceneRect = self.scene().sceneRect()
# self.newPos = self.pos() + QtCore.QPointF(xvel, yvel)
# self.newPos.setX(min(max(self.newPos.x(), sceneRect.left() + 10), sceneRect.right() - 10))
# self.newPos.setY(min(max(self.newPos.y(), sceneRect.top() + 10), sceneRect.bottom() - 10))
def advance(self):
pass
# if self.newPos == self.pos():
# return False
#
# self.setPos(self.newPos)
# return True
class BaseGraph(object):
"""
The Graph.self.data(start)[5]
"""
def __init__(self, timestep=0.04, oversample=1, gravity=1, viscosity=None, name='EpiGrass Viewer', **keywords):
"""
Construct a Graph.
"""
self.timestep = timestep
self.rate = 1.0 / timestep
self.oversample = oversample
self.gravity = gravity
self.viscosity = viscosity
self.map = None
self.nodes = []
self.edges = []
self.polyDict = {}
self.dragObject = None
self.click = None
self.distance = None
self.timelabel = None
self.rememberFixed = None
self.rememberColor = None
self.display = BaseBox()
def insertNode(self, node):
"""
Insert node into the system.
\ """
#needs to be a list because the node index in this list identify it within the graph.
#FIXME: verify time overhead of this check
if not node in self.nodes:
self.nodes.append(node)
self.polyDict[node.geocode] = node
node.graph = self #pass a reference of self to the node.
def insertMap(self, map_):
"""
Insert map into the system.
"""
self.map = map_
map_.graph = self
def insertNodeList(self, nodelist):
"""
Insert all Nodes in nodelist into the system.
"""
map(self.insertNode, nodelist)
def insertEdge(self, edge):
"""
Insert edge into the system.
"""
if edge not in self.edges:
self.edges.append(edge)
def insertEdgeList(self, edgelist):
"""
Insert all Edges in edgelist into the system.
"""
map(self.insertEdge, edgelist)
def getEdgeFromMatrix(self, matrix):
"""
Extract edges from the adjacency matrix.
"""
#FIXME: eitehr integrate this into the graph object, or make it a separate function
siz = matrix.shape[0]
el = []
for c in xrange(siz):
for l in xrange(c + 1): #scans only the lower triangle
if matrix[l, c]:
el.append((c, l))
return el
def centerView(self):
pass
def advance(self):
"""
Perform one Iteration of the system by advancing one timestep.
"""
microstep = self.timestep / self.oversample
center = visual.vector(0, 0, 0)
for i in range(self.oversample):
for edge in self.edges:
edge.calcSpringForce()
if edge.damping:
edge.calcDampingForce()
for node in self.nodes:
if not node.fixed:
if self.gravity:
node.calcGravityForce(self.gravity)
if self.viscosity:
node.calcViscosityForce(self.viscosity)
node.calcNewLocation(microstep)
node.clearForce()
center += node.pos
self.center = center / float(len(self.nodes))
for edge in self.edges:
edge.update()
def dispatchDnD(self):
"""Process the drag and drop interaction from the mouse.
"""
pass
def step(self):
"""Perform one step. This is a convenience method.
It actually calls dispatchDnD() and advance().
"""
self.advance()
time.sleep(self.timestep)
def mainloop(self):
"""Start the mainloop, which means that step() is
called in an infinite loop.
"""
while 1:
self.step()
class BaseMap(object):
def __init__(self, fname, namefield='NOME_ZONAS', geocfield='ZONA_TRAFE'):
self.namefield = namefield
self.geocfield = geocfield
self.centroids = [] #centroid list (x,y,z) tuples
self.centdict = {} # keys are geocode, values are (x,y,z) tuples
self.geomdict = {} # keys are geocode, values are geometries
self.nlist = [] # nodelist: feature objects
self.polyList = [] # Qpolygon list: Polygon objects
self.polyDict = {}
if os.path.exists(fname):
self.Reader(fname)
else:
# Check if it exist in parent directory
upfname = os.path.join('..', fname)
if os.path.exists(upfname):
self.Reader(upfname)
else:
QtGui.QMessageBox.information(None,
self.trUtf8("Map not found"),
self.trUtf8(
"""Neither {} nor {} were found in {}""".format(fname, upfname,
os.getcwd())),
self.trUtf8("&OK"))
def Reader(self, fname):
"""
Reads shapefiles vector files.
"""
g = ogr.Open(fname)
L = g.GetLayer(0)
N = 0
tp = []
feat = L.GetNextFeature()
while feat is not None:
field_count = L.GetLayerDefn().GetFieldCount()
geo = feat.GetGeometryRef()
if geo.GetGeometryCount() < 2:
g1 = geo.GetGeometryRef(0)
geocode = feat.GetFieldAsInteger(self.geocfield)
name = feat.GetFieldAsString(self.namefield)
self.geomdict[geocode] = g1
if g1.GetGeometryType() == 3: #If it is a polygon
cen = g1.Centroid()
self.nlist.append(feat)
self.centdict[geocode] = (cen.GetX(), cen.GetY(), cen.GetZ())
x = [g1.GetX(i) for i in xrange(g1.GetPointCount())]
y = [-g1.GetY(i) for i in xrange(g1.GetPointCount())]
lp = zip(x, y) # list of points
tp += lp
# print geocode
self.dbound(lp, geocode, name)
for c in xrange(geo.GetGeometryCount()):
ring = geo.GetGeometryRef(c)
for cnt in xrange(ring.GetGeometryCount()):
g1 = ring.GetGeometryRef(cnt)
if g1.GetGeometryType() == 3: # If it is a polygon
geocode = feat.GetFieldAsInteger(self.geocfield)
name = feat.GetFieldAsString(self.namefield)
self.geomdict[geocode] = g1
cen = g1.Centroid()
self.nlist.append(feat)
self.centdict[geocode] = (cen.GetX(), cen.GetY(), cen.GetZ())
x = [g1.GetX(i) for i in xrange(g1.GetPointCount())]
y = [-g1.GetY(i) for i in xrange(g1.GetPointCount())]
lp = zip(x, y) # list of points
tp += lp
# print geocode
self.dbound(lp, geocode, name)
feat = L.GetNextFeature()
g.Destroy()
tp = array(tp)
self.dimension = tp.max()
center = average(tp, axis=0)
self.center = center
def dbound(self, *args):
pass
class QtMap(BaseMap):
def __init__(self, fname, display=None, namefield='NOME_ZONAS', geocfield='ZONA_TRAFE'):
self.display = display
self.xmin, self.ymin, self.xmax, self.ymax = 180, 90, -180, -90
BaseMap.__init__(self, fname, namefield, geocfield)
def dbound(self, pol, geocode=None, name=""):
"""
Draws a polygon.
"""
#FIXME: consertar algoritmo para funcionar com qualquer sistema de coordenadas
p = Polygon(pol, geocode, name, self.display)
self.xmin = p.xmin if p.xmin < self.xmin else self.xmin
self.ymin = p.ymin if p.ymin < self.ymin else self.ymin
self.xmax = p.xmax if p.xmax > self.xmax else self.xmax
self.ymax = p.ymax if p.ymax > self.ymax else self.ymax
#print self.xmin, self.ymin, self.xmax, self.ymax
self.polyList.append(p)
#print geocode
self.polyDict[geocode] = p
return p
class Polygon(QtGui.QGraphicsItem):
'''
Polygons that compose the map on Qt
'''
Type = QtGui.QGraphicsItem.UserType + 1
def __init__(self, plist, geocode, name, graphWidget):
QtGui.QGraphicsItem.__init__(self)
self.display = graphWidget
self.xmin, self.ymin = (array(plist)).min(axis=0)
self.xmax, self.ymax = (array(plist)).max(axis=0)
self.center = ((self.xmax + self.xmin) / 2., (self.ymax + self.ymin) / 2.)
self.width = self.xmax - self.xmin
self.height = self.ymax - self.ymin
self.plist = plist
self.pointList = [QtCore.QPointF(x, y) for x, y in plist]
self.polyg = QtGui.QPolygonF(self.pointList)
self.newPos = QtCore.QPointF()
self.lineColor = QtCore.Qt.black
self.fillColor = QtCore.Qt.yellow
self.geocode = geocode
self.name = name
self.setToolTip(str(self.geocode) + " - " + name)
self.setCursor(QtCore.Qt.PointingHandCursor)
self.setFlag(QtGui.QGraphicsItem.ItemIsSelectable)
self.setZValue(1)
def type(self):
return Polygon.Type
def shape(self):
path = QtGui.QPainterPath()
#path.addRectF(self.xmin, self.ymin,self.width, self.height)
path.addPolygon(self.polyg)
return path
def paint(self, painter, option, widget):
painter.setBrush(self.fillColor)
painter.setPen(QtGui.QPen(self.lineColor, 0))
painter.drawPolygon(self.polyg)
def mousePressEvent(self, event):
button = event.button()
# print button
scenepos = event.scenePos()
pos = event.pos()
self.select()
#QtGui.QGraphicsItem.mousePressEvent(self, event)
def select(self):
"""
Toggle selection of polygon
"""
if self.isSelected():
# print "unselect"
self.setSelected(False)
col = self.display.jet(self.display.timeseries[self.display.step][self.geocode])
self.fillColor = QtGui.QColor(int(col[0] * 255), int(col[1] * 255), int(col[2] * 255), int(col[3] * 255))
self.lineColor = QtCore.Qt.black
self.curve.detach()
self.display.qwtPlot.replot()
else:
# print "select"
self.setSelected(True)
# print self.isSelected()
self.fillColor = QtCore.Qt.green
self.lineColor = QtCore.Qt.white
self.display.addTsCurve(self.geocode, self.name)
self.display.qwtPlot.replot()
self.update()
def mouseReleaseEvent(self, event):
self.update()
#QtGui.QGraphicsItem.mouseReleaseEvent(self, event)
def mouseDoubleClickEvent(self, event):
"""
Center the display on the coordinates of the double click
"""
button = event.button()
scenepos = event.scenePos()
pos = event.pos()
self.display.mapView.centerOn(scenepos)
def boundingRect(self):
return QtCore.QRectF(self.xmin, self.ymin,
self.width, self.height)
class QtGraph(BaseGraph):
def __init__(self, display, **keywords):
"""
Construct a Graph. to be displayed with Python Visual
"""
BaseGraph.__init__(self)
self.display = display
self.nodes = []
self.polyDict = {} #dictionary of nodes by geocode
self.rect = [0, 0, 0, 0] # xmin,ymin,xmax,ymax
def getRect(self):
'''
Returns the bounding rectangle for the graph
'''
for n in self.nodes:
self.rect[0] = n.pos.x() if n.pos.x() < self.rect[0] else self.rect[0]
self.rect[1] = n.pos.y() if n.pos.y() < self.rect[1] else self.rect[1]
self.rect[2] = n.pos.x() if n.pos.x() > self.rect[2] else self.rect[2]
self.rect[3] = n.pos.y() if n.pos.y() > self.rect[3] else self.rect[3]
return self.rect
class QtNode(BaseNode):
"""
Physical model and visual representation of a node as a mass using Qt
"""
def __init__(self, graphw, geocode, name):
"""
Construct a mass.
"""
BaseNode.__init__(self, graphw)
self.edgeList = []
self.geocode = geocode
self.name = name
self.fillColor = QtGui.QColor(255, 255, 0)
self.size = 20
self.setToolTip(str(self.geocode) + " - " + name)
self.selected = False # using our own selection flag to avoid conflicts with other stuff
#self.setFlag(QtGui.QGraphicsItem.ItemIsSelectable)
def mousePressEvent(self, event):
if self.selected:
#print "unselect"
self.selected = False
if self.graph.display.timeseries:
col = self.graph.display.jet(self.graph.display.timeseries[self.graph.display.step][self.geocode])
self.fillColor = QtGui.QColor(int(col[0] * 255), int(col[1] * 255), int(col[2] * 255),
int(col[3] * 255))
else:
self.fillColor = QtGui.QColor(255, 255, 0)
self.lineColor = QtCore.Qt.black
self.curve.detach()
self.graph.display.qwtPlot.replot()
else:
#print "select"
self.selected = True
# print self.isSelected()
self.fillColor = QtGui.QColor(0, 255, 0)
self.lineColor = QtCore.Qt.white
self.graph.display.addTsCurve(self.geocode, self.name)
self.graph.display.qwtPlot.replot()
self.update()
# QtGui.QGraphicsItem.mousePressEvent(self, event)
def mouseReleaseEvent(self, event):
self.update()
#QtGui.QGraphicsItem.mouseReleaseEvent(self, event)
def type(self):
return QtNode.Type
def addEdge(self, edge):
self.edgeList.append(edge)
edge.adjust()
def edges(self):
return self.edgeList
def boundingRect(self):
adjust = 2.0
return QtCore.QRectF(-10 - adjust, -10 - adjust,
23 + adjust, 23 + adjust)
def shape(self):
path = QtGui.QPainterPath()
path.addEllipse(-10, -10, self.size, self.size)
return path
def paint(self, painter, option, widget):
painter.setPen(QtCore.Qt.NoPen)
painter.setBrush(QtCore.Qt.darkGray)
painter.drawEllipse(-7, -7, self.size, self.size)
gradient = QtGui.QRadialGradient(-3, -3, 10)
if option.state & QtGui.QStyle.State_Sunken:
gradient.setCenter(3, 3)
gradient.setFocalPoint(3, 3)
gradient.setColorAt(1, QtGui.QColor(self.fillColor).light(120))
gradient.setColorAt(0, QtGui.QColor(self.fillColor.darker(150)).light(120))
else:
gradient.setColorAt(0, self.fillColor)
gradient.setColorAt(1, self.fillColor.darker(150))
painter.setBrush(QtGui.QBrush(gradient))
painter.setPen(QtGui.QPen(QtCore.Qt.black, 0))
painter.drawEllipse(-10, -10, self.size, self.size)
def itemChange(self, change, value):
if change == QtGui.QGraphicsItem.ItemPositionChange:
pass
# for edge in self.edgeList:
# edge.adjust()
#self.graph.display.mapView.itemMoved()
return QtGui.QGraphicsItem.itemChange(self, change, value)
class QtEdge(QtGui.QGraphicsItem):
Pi = math.pi
TwoPi = 2.0 * Pi
Type = QtGui.QGraphicsItem.UserType + 2
def __init__(self, sourceNode, destNode):
QtGui.QGraphicsItem.__init__(self)
self.arrowSize = 10.0
self.sourcePoint = QtCore.QPointF()
self.destPoint = QtCore.QPointF()
self.setAcceptedMouseButtons(QtCore.Qt.NoButton)
self.source = sourceNode
self.dest = destNode
self.source.addEdge(self)
self.source.neighbors.append(self.dest)
self.dest.addEdge(self)
self.dest.neighbors.append(self.source)
self.adjust()
def type(self):
return QtEdge.Type
def sourceNode(self):
return self.source
def setSourceNode(self, node):
self.source = node
self.adjust()
def destNode(self):
return self.dest
def setDestNode(self, node):
self.dest = node
self.adjust()
def adjust(self):
if not self.source or not self.dest:
return
line = QtCore.QLineF(self.mapFromItem(self.source, 0, 0), self.mapFromItem(self.dest, 0, 0))
length = line.length()
if length == 0.0:
return
edgeOffset = QtCore.QPointF((line.dx() * 10) / length, (line.dy() * 10) / length)
self.prepareGeometryChange()
self.sourcePoint = line.p1() + edgeOffset
self.destPoint = line.p2() - edgeOffset
def boundingRect(self):
if not self.source or not self.dest:
return QtCore.QRectF()
penWidth = 1
extra = (penWidth + self.arrowSize) / 2.0
return QtCore.QRectF(self.sourcePoint,
QtCore.QSizeF(self.destPoint.x() - self.sourcePoint.x(),
self.destPoint.y() - self.sourcePoint.y())).normalized().adjusted(-extra,
-extra,
extra,
extra)
def paint(self, painter, option, widget):
if not self.source or not self.dest:
return
# Draw the line itself.
line = QtCore.QLineF(self.sourcePoint, self.destPoint)
if line.length() == 0.0:
return
painter.setPen(QtGui.QPen(QtCore.Qt.black, 1, QtCore.Qt.SolidLine, QtCore.Qt.RoundCap, QtCore.Qt.RoundJoin))
painter.drawLine(line)
# Draw the arrows if there's enough room.
angle = math.acos(line.dx() / line.length())
if line.dy() >= 0:
angle = QtEdge.TwoPi - angle
sourceArrowP1 = self.sourcePoint + QtCore.QPointF(math.sin(angle + QtEdge.Pi / 3) * self.arrowSize,
math.cos(angle + QtEdge.Pi / 3) * self.arrowSize)
sourceArrowP2 = self.sourcePoint + QtCore.QPointF(math.sin(angle + QtEdge.Pi - QtEdge.Pi / 3) * self.arrowSize,
math.cos(angle + QtEdge.Pi - QtEdge.Pi / 3) * self.arrowSize);
destArrowP1 = self.destPoint + QtCore.QPointF(math.sin(angle - QtEdge.Pi / 3) * self.arrowSize,
math.cos(angle - QtEdge.Pi / 3) * self.arrowSize)
destArrowP2 = self.destPoint + QtCore.QPointF(math.sin(angle - QtEdge.Pi + QtEdge.Pi / 3) * self.arrowSize,
math.cos(angle - QtEdge.Pi + QtEdge.Pi / 3) * self.arrowSize)
painter.setBrush(QtCore.Qt.black)
painter.drawPolygon(QtGui.QPolygonF([line.p1(), sourceArrowP1, sourceArrowP2]))
painter.drawPolygon(QtGui.QPolygonF([line.p2(), destArrowP1, destArrowP2]))
class MapServer:
"""
xmlrpc server
"""
def __init__(self, porta=50000):
self.server = SimpleXMLRPCServer(("", porta))
self.map = None
self.step = 0
self.jet = cm.get_cmap("jet", 50)
def start(self):
#self.server.register_function(self.map.drawStep)
self.server.serve_forever()
class ReplayWorker(QtCore.QThread):
def __init__(self, ts, arr, period=.20, parent=None):
QtCore.QThread.__init__(self, parent)
self.mutex = QtCore.QMutex()
self.condition = QtCore.QWaitCondition()
self.timeseries = ts
self.arrivals = arr
self.period = period
def __del__(self):
self.mutex.lock()
self.condition.wakeOne()
self.mutex.unlock()
self.wait()
def render(self):
locker = QtCore.QMutexLocker(self.mutex)
self.start()
def run(self):
for t in xrange(len(self.timeseries)):
self.mutex.lock()
self.emit(QtCore.SIGNAL("drawStep"), t, self.timeseries[t])
self.mutex.unlock()
if self.arrivals.has_key(t):
self.emit(QtCore.SIGNAL("flash"), t, self.arrivals[t])
# self.flashBorders(t, self.arrivals[t])
time.sleep(self.period)
self.mutex.lock()
self.condition.wait(self.mutex)
self.mutex.unlock()
if __name__ == '__main__':
app = QtGui.QApplication(sys.argv)
QtCore.qsrand(QtCore.QTime(0, 0, 0).secsTo(QtCore.QTime.currentTime()))
widget = MapWindow()
widget.drawMap('riozonas_LatLong.shp', 'NOME_ZONAS', 'ZONA_TRAFE')
# poslist = [(1, -50, -50, 'a'),(2, 0, -50, 'b'),(3, 50, -50, 'c'),(4, -50, 0,'d'),(5, 0, 0, 'e'),(6, 50, 0, 'f'),(7, -50, 50, 'g'),(8, 0, 50, 'h'),(9, 50, 50, 'i')]
# elist = [(0,1),(1,2),(1,4),(2,5),(3,0),(3,4),(4,5),(4,7),(5,8),(6,3),(7,6),(8,7)]
# widget.drawGraph(poslist, elist)
widget.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/dgraph.py.bak 0000775 0000000 0000000 00000116136 12720633740 017450 0 ustar root root 0000000 0000000 # ! /usr/bin/env python
"""
This module is a graph and map visualizing tool.
"""
import math
from osgeo import ogr
import threading
import itertools
import time, os, sys
from PyQt4 import Qt, QtCore, QtGui, QtOpenGL, Qwt5 as Qwt
from numpy import array, sqrt, average
from numpy.random import randint, uniform
from Ui_display import Ui_Form
from matplotlib import cm
from types import MethodType
from SimpleXMLRPCServer import SimpleXMLRPCServer
##import psyco
##psyco.full()
graphic_backend = "qt"
def keyPressEvent(self, event):
key = event.key()
if key == QtCore.Qt.Key_Up:
self.translate(0, -20)
elif key == QtCore.Qt.Key_Down:
self.translate(0, 20)
elif key == QtCore.Qt.Key_Left:
self.translate(-20, 0)
elif key == QtCore.Qt.Key_Right:
self.translate(20, 0)
elif key == QtCore.Qt.Key_Plus:
self.scaleView(1.2)
elif key == QtCore.Qt.Key_Minus:
self.scaleView(1 / 1.2)
elif key == QtCore.Qt.Key_Space or key == QtCore.Qt.Key_Enter:
for item in self.scene().items():
if isinstance(item, Polygon):
item.setPos(-150 + QtCore.qrand() % 300, -150 + QtCore.qrand() % 300)
else:
QtGui.QGraphicsView.keyPressEvent(self, event)
def wheelEvent(self, event):
self.scaleView(math.pow(2.0, -event.delta() / 240.0))
def scaleView(self, scaleFactor):
factor = self.matrix().scale(scaleFactor, scaleFactor).mapRect(QtCore.QRectF(0, 0, 1, 1)).width()
# if factor < 0.07 or factor > 1000000:
# return
self.scale(scaleFactor, scaleFactor)
def timerEvent(self, event):
pass
for node in self.nodes:
node.calculateForces()
itemsMoved = False
for node in self.nodes:
if node.advance():
itemsMoved = True
if not itemsMoved:
self.killTimer(self.timerId)
self.timerId = 0
def itemMoved(self):
if not self.timerId:
self.timerId = self.startTimer(1000 / 25)
def array_mag(a):
acc = 0
for value in a:
acc += value ** 2
return math.sqrt(acc)
def array_norm(a):
"""normalizes an array"""
mag = array_mag(a)
b = a.copy()
for i in xrange(len(a)):
b[i] = b[i] / mag
return b
def array_dot(a, b):
return sum([a[i] * b[i] for i in xrange(len(a))])
class MapWindow(QtGui.QWidget, Ui_Form):
'''
Map and Time-series window
'''
def __init__(self, G=None):
QtGui.QWidget.__init__(self, None)
self.Form = QtGui.QWidget()
self.setupUi(self.Form)
self.jet = cm.get_cmap("jet", 50) # colormap
self.timeseries = {}
self.arrivals = {}
self.colors = itertools.cycle(
[Qt.Qt.red, Qt.Qt.green, Qt.Qt.blue, Qt.Qt.cyan, Qt.Qt.magenta, Qt.Qt.yellow, Qt.Qt.black, Qt.Qt.darkCyan,
Qt.Qt.darkRed, Qt.Qt.darkGreen, Qt.Qt.darkBlue, Qt.Qt.darkMagenta, Qt.Qt.darkYellow])
self.setupQwtPlot()
self.step = 0
self.M = None # initialize map widget
# Configuring View
self.mapView.setViewportUpdateMode(QtGui.QGraphicsView.SmartViewportUpdate)
# Overloading event-handling methods for self.mapView
self.mapView.keyPressEvent = MethodType(keyPressEvent, self.mapView)
self.mapView.wheelEvent = MethodType(wheelEvent, self.mapView)
self.mapView.scaleView = MethodType(scaleView, self.mapView)
# connections
QtCore.QObject.connect(self.horizontalSlider, QtCore.SIGNAL("sliderReleased()"),
self.on_horizontalSlider_sliderMoved)
QtCore.QObject.connect(self.horizontalSlider, QtCore.SIGNAL("valueChanged()"),
self.on_horizontalSlider_valueChanged)
QtCore.QObject.connect(self.pushButton, QtCore.SIGNAL("released()"), self.replay)
QtCore.QObject.connect(self.splitter, QtCore.SIGNAL("splitterMoved()"), self.centerScene)
print hasattr(self, "showSumBox")
QtCore.QObject.connect(self.showSumBox, QtCore.SIGNAL("stateChanged(int)"), self.on_showSumBox_stateChanged)
# self.server = MapServer()
# self.server.map = self.M
# st = threading.Thread(target=self.server.start)
# st.start()
def setupQwtPlot(self):
"""
Sets up the time series plot
"""
# self.qwtPlot.setTitle('%s'%self.variable)
self.qwtPlot.setAxisTitle(Qwt.QwtPlot.xBottom, 'time')
# self.qwtPlot.setAxisTitle(Qwt.QwtPlot.yLeft, 'count')
self.qwtPlot.insertLegend(Qwt.QwtLegend(), Qwt.QwtPlot.RightLegend)
# Time marker
self.mX = Qwt.QwtPlotMarker()
self.mX.setLabel(Qwt.QwtText('t = '))
self.mX.setLabelAlignment(Qt.Qt.AlignRight | Qt.Qt.AlignTop)
self.mX.setLineStyle(Qwt.QwtPlotMarker.VLine)
self.mX.setXValue(0)
self.mX.attach(self.qwtPlot)
self.qwtPlot.replot()
def fill_nodel_list(self, pl):
"""
creates check boxes on the node list group box
pl is a list of polygons
"""
lo = self.nodeListLayout
pl.sort(key=lambda p: p.name) # adding sites in alphabetical order
for n in pl:
cb = QtGui.QCheckBox(self.scrollArea)
cb.setText(n.name)
QtCore.QObject.connect(cb, QtCore.SIGNAL("stateChanged(int)"), n.select)
cb.setToolTip(str(n.geocode))
lo.addWidget(cb)
# self.nodeGroupBox.setLayout(lo)
def add_global_ts_curve(self, scope="all"):
"""
Plots a time series which is the sum of all(scope="all") or
selected timeseries (scope="set")
"""
t = self.timeseries.keys()
t.sort()
data = [0] * len(self.timeseries)
if scope == "all":
name = "Total"
for k, v in self.timeseries.iteritems():
data[k] = sum(v.values())
# print v
elif scope == "Selected":
name = "Sum of Selected"
#TODO: fix this
# print data
curve = Qwt.QwtPlotCurve(name)
pen = Qt.QPen(Qt.Qt.gray)
pen.setStyle(4)
pen.setWidth(3)
curve.setPen(pen)
curve.attach(self.qwtPlot)
curve.setData(t, data)
self.globalCurve = curve
self.qwtPlot.replot()
def addTsCurve(self, gc, name):
"""
Plots a time series curve to the plot window
"""
data = [0] * len(self.timeseries)
for k, v in self.timeseries.iteritems():
data[k] = v[gc]
t = self.timeseries.keys()
t.sort()
curve = Qwt.QwtPlotCurve(name)
curve.setPen(Qt.QPen(self.colors.next()))
curve.attach(self.qwtPlot)
curve.setData(t, data)
self.M.polyDict[gc].curve = curve
def drawMap(self, filename, namefield, geocfield):
"""
Draws the map stored in the shapefile fname.
"""
#Setup the Map
self.M = Map(fname=filename, display=self, namefield=namefield, geocfield=geocfield)
# self.server.map = self.M
xmin, ymin = self.M.xmin, self.M.ymin
xmax, ymax = self.M.xmax, self.M.ymax
xxs = (xmax - xmin) * 1.1 #percentage of extra space
yxs = (ymax - ymin) * 1.1 #percentage of extra space
#calculating center of scene
xc = (xmax + xmin) / 2.
yc = (ymax + ymin) / 2.
self.mapView.scene = QtGui.QGraphicsScene(self.mapView)
#self.mapView.scene.setItemIndexMethod(QtGui.QGraphicsScene.NoIndex)
self.mapView.scene.setSceneRect(xmin, ymin, xxs, yxs)
#print self.mapView.scene.width(), self.mapView.scene.height()
self.mapView.fitInView(xmin, ymin, xxs, yxs)
self.mapView.setScene(self.mapView.scene)
self.mapView.updateSceneRect(self.mapView.scene.sceneRect())
self.mapView.centerOn(xc, yc)
#self.mapView.setViewport(QtOpenGL.QGLWidget())
self.mapView.setCacheMode(QtGui.QGraphicsView.CacheBackground)
self.mapView.setRenderHint(QtGui.QPainter.Antialiasing)
self.mapView.setTransformationAnchor(QtGui.QGraphicsView.AnchorUnderMouse)
self.mapView.setResizeAnchor(QtGui.QGraphicsView.AnchorViewCenter)
for p in self.M.polyList:
self.mapView.scene.addItem(p)
self.fill_nodel_list(self.M.polyList)
#self.scene.addText("%s,%s,%s,%s"%(xmin, xxs, ymin, yxs))
# self.polys = [item for item in self.mapView.scene.items() if isinstance(item, Polygon)]
#self.mapView.addGraph(self.polys)
self.mapView.setMinimumSize(300, 300)
#self.mapView.setWindowTitle(self.tr("Network View"))
scale_factor = self.mapView.width() / xxs
self.mapView.scale(scale_factor, scale_factor)
if self.showSumBox.isChecked():
self.add_global_ts_curve("all")
#print self.polys
def drawGraph(self, nlist, elist=[]):
"""
Draws a graph in the scene
nlist: is a lis of nodes in the format(x,y,geocode,name)
elist: is a list of edges described by tuples of indices to the first list.
"""
self.label.setText('Network View')
self.M = Graph(self)
self.mapView.timerId = 0
#Adding graph event handlers
self.mapView.itemMoved = MethodType(itemMoved, self.mapView)
self.mapView.timerEvent = MethodType(timerEvent, self.mapView)
self.mapView.scene = QtGui.QGraphicsScene(self.mapView)
npos = [(n[1], -n[2]) for n in nlist]
xmin, ymin = array(npos).min(axis=0)
xmax, ymax = array(npos).max(axis=0)
for n in nlist:
node = Node(self.M, n[0], n[3])
node.setPos(*(n[1], -n[2]))
node.size = max(xmax - xmin, ymax - ymin) / math.sqrt(len(nlist)) * 0.5
self.mapView.scene.addItem(node)
self.M.insertNode(node)
#print node.x(), node.y(), n.center[0], n.center[1]
self.mapView.nodes = self.M.nodes
for e in elist:
ed = Edge(self.M.nodes[int(e[0])], self.M.nodes[int(e[1])])
ed.arrowSize = max(xmax - xmin, ymax - ymin) / math.sqrt(len(nlist)) * 0.2
self.mapView.scene.addItem(ed)
self.M.insertEdge(ed)
self.xmax, self.xmin = xmax, xmin
self.ymax, self.ymin = ymax, ymin
self.centerScene()
def centerScene(self):
"""
Centers the scene and fits the specified rectangle to it
"""
ymax, ymin = self.ymax, self.ymin
xmax, xmin = self.xmax, self.xmin
xxs = (xmax - xmin) * 1.1 # percentage of extra space
yxs = (ymax - ymin) * 1.1 # percentage of extra space
#calculating center of scene
xc = (xmax + xmin) / 2.
yc = (ymax + ymin) / 2.
self.mapView.scene.setItemIndexMethod(QtGui.QGraphicsScene.NoIndex)
self.mapView.scene.setSceneRect(xmin, ymin, xxs, yxs)
# print self.mapView.scene.width(), self.mapView.scene.height()
self.mapView.fitInView(xmin, ymin, xxs, yxs)
self.mapView.setScene(self.mapView.scene)
self.mapView.updateSceneRect(self.mapView.scene.sceneRect())
self.mapView.centerOn(xc, yc)
scale_factor = self.mapView.width() / xxs
self.mapView.scale(scale_factor, scale_factor)
self.mapView.setCacheMode(QtGui.QGraphicsView.CacheBackground)
self.mapView.setRenderHint(QtGui.QPainter.Antialiasing)
self.mapView.setTransformationAnchor(QtGui.QGraphicsView.AnchorUnderMouse)
self.mapView.setResizeAnchor(QtGui.QGraphicsView.AnchorViewCenter)
def paintPols(self, datadict):
"""
Paint the polygons with the data from data dict
datadict is a dictionary of the form {geocode:value,...}
"""
if max(datadict.values()) > 1:
normw = max(datadict.values())
else:
normw = 1.
for gc, val in datadict.iteritems():
try:
val /= normw #normalize values if necessary
except TypeError as e:
print gc, val, datadict[gc], e
col = self.jet(val) # rgba list
gc = int(gc)
# print gc, type(gc)
if self.M.polyDict.has_key(gc):
self.M.polyDict[gc].fillColor = QtGui.QColor(int(col[0] * 255), int(col[1] * 255), int(col[2] * 255),
int(col[3] * 255))
self.M.polyDict[gc].update()
# else:
# print self.M.polyDict.values()
def replay(self):
"""
Replay the time series from beggining to end.
"""
rw = ReplayWorker(self.timeseries, self.arrivals)
def stop_replay():
rw.quit()
QtCore.QObject.connect(rw, QtCore.SIGNAL("drawStep"), self.drawStep)
QtCore.QObject.connect(rw, QtCore.SIGNAL("flash"), self.flashBorders)
QtCore.QObject.connect(self.pushButton_2, QtCore.SIGNAL("released()"), stop_replay)
rw.render()
def drawStep(self, step, datadict={}):
"""
Draws one timestep on the map
step: timestep number
datadict: dictionary geocode:value
"""
self.step = step
self.paintPols(datadict)
self.lcdNumber.display(step)
self.horizontalSlider.setValue(step)
self.timeseries[step] = datadict
def flashBorders(self, step, gclist=[]):
"""
Flash the borders to bright green to signal events
gclist: list of geocodes to be flashed
"""
self.arrivals[step] = gclist
for gc in gclist:
gc = int(gc)
self.M.polyDict[gc].lineColor = QtCore.Qt.green
self.M.polyDict[gc].update()
self.M.polyDict[gc].lineColor = QtCore.Qt.black
def show(self):
self.Form.show()
def on_horizontalSlider_valueChanged(self):
if self.horizontalSlider.isEnabled():
self.on_horizontalSlider_sliderMoved()
def on_horizontalSlider_sliderMoved(self):
"""
Handles updating the display on a slider move
"""
val = self.horizontalSlider.value()
self.lcdNumber.display(val)
self.step = val
self.drawStep(val, self.timeseries[val])
self.mX.setXValue(self.step)
self.mX.setLabel(Qwt.QwtText("t = %s" % self.step))
self.qwtPlot.replot()
# @QtCore.pyqtSignature("int")
def on_showSumBox_stateChanged(self, st):
"""
Handles adding/remove global timeseries curve
"""
if st:
# print "adding global series"
self.add_global_ts_curve()
else:
# print "removing global series"
self.globalCurve.detach()
self.qwtPlot.replot()
#BlackBox :-)
class BaseBox(object):
def __init__(self, *args, **kwargs):
for key in kwargs.keys():
self.__setattr__(key, kwargs[key])
BaseCylinder = BaseBox
#Short factory functions, so that callers don't have to care
#about which class is being used for visualization
def Node(*args, **kwargs):
if graphic_backend == "visual":
return VisualNode(*args, **kwargs)
elif graphic_backend == "qt":
return QtNode(*args, **kwargs)
else:
return BaseNode(*args, **kwargs)
def Edge(*args, **kwargs):
if graphic_backend == "visual":
return VisualEdge(*args, **kwargs)
elif graphic_backend == "qt":
return QtEdge(*args, **kwargs)
else:
return BaseRubberEdge(*args, **kwargs)
def Graph(*args, **kwargs):
if graphic_backend == "visual":
return VisualGraph(*args, **kwargs)
elif graphic_backend == "qt":
return QtGraph(*args, **kwargs)
else:
return BaseGraph(*args, **kwargs)
def Map(*args, **kwargs):
if graphic_backend == "visual":
return VisualMap(*args, **kwargs)
elif graphic_backend == "qt":
return QtMap(*args, **kwargs)
else:
return BaseGraph(*args, **kwargs)
rho = 23.8732414637845 # for backwardscompatibility
class BaseNode(QtGui.QGraphicsItem):
Type = QtGui.QGraphicsItem.UserType + 1
def __init__(self, graphWidget):
QtGui.QGraphicsItem.__init__(self)
self.graph = graphWidget
self.edgeList = []
self.newPos = QtCore.QPointF()
# self.setFlag(QtGui.QGraphicsItem.ItemIsMovable)
self.setZValue(1)
self.neighbors = []
def type(self):
return Node.Type
def addEdge(self, edge):
self.edgeList.append(edge)
edge.adjust()
def edges(self):
return self.edgeList
def calculateForces(self):
if not self.scene() or self.scene().mouseGrabberItem() is self:
self.newPos = self.pos()
return
# Sum up all forces pushing this item away.
xvel = 0.0
yvel = 0.0
# for item in self.graph.nodes:
# line = QtCore.QLineF(self.mapFromItem(item, 0, 0), QtCore.QPointF(0, 0))
# dx = line.dx()
# dy = line.dy()
# l = 2.0 * (dx * dx + dy * dy)
# if l > 0:
# xvel += (dx * 150.0) / l
# yvel += (dy * 150.0) / l
#
# # Now subtract all forces pulling items together.
# weight = (len(self.edgeList) + 1) * 10.0
# for edge in self.edgeList:
# if edge.sourceNode() is self:
# pos = self.mapFromItem(edge.destNode(), 0, 0)
# else:
# pos = self.mapFromItem(edge.sourceNode(), 0, 0)
# xvel += pos.x() / weight
# yvel += pos.y() / weight
#
# if QtCore.qAbs(xvel) < 0.1 and QtCore.qAbs(yvel) < 0.1:
# xvel = yvel = 0.0
# sceneRect = self.scene().sceneRect()
# self.newPos = self.pos() + QtCore.QPointF(xvel, yvel)
# self.newPos.setX(min(max(self.newPos.x(), sceneRect.left() + 10), sceneRect.right() - 10))
# self.newPos.setY(min(max(self.newPos.y(), sceneRect.top() + 10), sceneRect.bottom() - 10))
def advance(self):
pass
# if self.newPos == self.pos():
# return False
#
# self.setPos(self.newPos)
# return True
class BaseGraph(object):
"""
The Graph.self.data(start)[5]
"""
def __init__(self, timestep=0.04, oversample=1, gravity=1, viscosity=None, name='EpiGrass Viewer', **keywords):
"""
Construct a Graph.
"""
self.timestep = timestep
self.rate = 1.0 / timestep
self.oversample = oversample
self.gravity = gravity
self.viscosity = viscosity
self.map = None
self.nodes = []
self.edges = []
self.polyDict = {}
self.dragObject = None
self.click = None
self.distance = None
self.timelabel = None
self.rememberFixed = None
self.rememberColor = None
self.display = BaseBox()
def insertNode(self, node):
"""
Insert node into the system.
\ """
#needs to be a list because the node index in this list identify it within the graph.
#FIXME: verify time overhead of this check
if not node in self.nodes:
self.nodes.append(node)
self.polyDict[node.geocode] = node
node.graph = self #pass a reference of self to the node.
def insertMap(self, map_):
"""
Insert map into the system.
"""
self.map = map_
map_.graph = self
def insertNodeList(self, nodelist):
"""
Insert all Nodes in nodelist into the system.
"""
map(self.insertNode, nodelist)
def insertEdge(self, edge):
"""
Insert edge into the system.
"""
if edge not in self.edges:
self.edges.append(edge)
def insertEdgeList(self, edgelist):
"""
Insert all Edges in edgelist into the system.
"""
map(self.insertEdge, edgelist)
def getEdgeFromMatrix(self, matrix):
"""
Extract edges from the adjacency matrix.
"""
#FIXME: eitehr integrate this into the graph object, or make it a separate function
siz = matrix.shape[0]
el = []
for c in xrange(siz):
for l in xrange(c + 1): #scans only the lower triangle
if matrix[l, c]:
el.append((c, l))
return el
def centerView(self):
pass
def advance(self):
"""
Perform one Iteration of the system by advancing one timestep.
"""
microstep = self.timestep / self.oversample
center = visual.vector(0, 0, 0)
for i in range(self.oversample):
for edge in self.edges:
edge.calcSpringForce()
if edge.damping:
edge.calcDampingForce()
for node in self.nodes:
if not node.fixed:
if self.gravity:
node.calcGravityForce(self.gravity)
if self.viscosity:
node.calcViscosityForce(self.viscosity)
node.calcNewLocation(microstep)
node.clearForce()
center += node.pos
self.center = center / float(len(self.nodes))
for edge in self.edges:
edge.update()
def dispatchDnD(self):
"""Process the drag and drop interaction from the mouse.
"""
pass
def step(self):
"""Perform one step. This is a convenience method.
It actually calls dispatchDnD() and advance().
"""
self.advance()
time.sleep(self.timestep)
def mainloop(self):
"""Start the mainloop, which means that step() is
called in an infinite loop.
"""
while 1:
self.step()
class BaseMap(object):
def __init__(self, fname, namefield='NOME_ZONAS', geocfield='ZONA_TRAFE'):
self.namefield = namefield
self.geocfield = geocfield
self.centroids = [] #centroid list (x,y,z) tuples
self.centdict = {} # keys are geocode, values are (x,y,z) tuples
self.geomdict = {} # keys are geocode, values are geometries
self.nlist = [] # nodelist: feature objects
self.polyList = [] # Qpolygon list: Polygon objects
self.polyDict = {}
if os.path.exists(fname):
self.Reader(fname)
else:
# Check if it exist in parent directory
upfname = os.path.join('..', fname)
if os.path.exists(upfname):
self.Reader(upfname)
else:
QtGui.QMessageBox.information(None,
self.trUtf8("Map not found"),
self.trUtf8(
"""Neither {} nor {} were found in {}""".format(fname, upfname,
os.getcwd())),
self.trUtf8("&OK"))
def Reader(self, fname):
"""
Reads shapefiles vector files.
"""
g = ogr.Open(fname)
L = g.GetLayer(0)
N = 0
tp = []
feat = L.GetNextFeature()
while feat is not None:
field_count = L.GetLayerDefn().GetFieldCount()
geo = feat.GetGeometryRef()
if geo.GetGeometryCount() < 2:
g1 = geo.GetGeometryRef(0)
geocode = feat.GetFieldAsInteger(self.geocfield)
name = feat.GetFieldAsString(self.namefield)
self.geomdict[geocode] = g1
if g1.GetGeometryType() == 3: #If it is a polygon
cen = g1.Centroid()
self.nlist.append(feat)
self.centdict[geocode] = (cen.GetX(), cen.GetY(), cen.GetZ())
x = [g1.GetX(i) for i in xrange(g1.GetPointCount())]
y = [-g1.GetY(i) for i in xrange(g1.GetPointCount())]
lp = zip(x, y) # list of points
tp += lp
# print geocode
self.dbound(lp, geocode, name)
for c in xrange(geo.GetGeometryCount()):
ring = geo.GetGeometryRef(c)
for cnt in xrange(ring.GetGeometryCount()):
g1 = ring.GetGeometryRef(cnt)
if g1.GetGeometryType() == 3: # If it is a polygon
geocode = feat.GetFieldAsInteger(self.geocfield)
name = feat.GetFieldAsString(self.namefield)
self.geomdict[geocode] = g1
cen = g1.Centroid()
self.nlist.append(feat)
self.centdict[geocode] = (cen.GetX(), cen.GetY(), cen.GetZ())
x = [g1.GetX(i) for i in xrange(g1.GetPointCount())]
y = [-g1.GetY(i) for i in xrange(g1.GetPointCount())]
lp = zip(x, y) # list of points
tp += lp
# print geocode
self.dbound(lp, geocode, name)
feat = L.GetNextFeature()
g.Destroy()
tp = array(tp)
self.dimension = tp.max()
center = average(tp, axis=0)
self.center = center
def dbound(self, *args):
pass
class QtMap(BaseMap):
def __init__(self, fname, display=None, namefield='NOME_ZONAS', geocfield='ZONA_TRAFE'):
self.display = display
self.xmin, self.ymin, self.xmax, self.ymax = 180, 90, -180, -90
BaseMap.__init__(self, fname, namefield, geocfield)
def dbound(self, pol, geocode=None, name=""):
"""
Draws a polygon.
"""
#FIXME: consertar algoritmo para funcionar com qualquer sistema de coordenadas
p = Polygon(pol, geocode, name, self.display)
self.xmin = p.xmin if p.xmin < self.xmin else self.xmin
self.ymin = p.ymin if p.ymin < self.ymin else self.ymin
self.xmax = p.xmax if p.xmax > self.xmax else self.xmax
self.ymax = p.ymax if p.ymax > self.ymax else self.ymax
#print self.xmin, self.ymin, self.xmax, self.ymax
self.polyList.append(p)
#print geocode
self.polyDict[geocode] = p
return p
class Polygon(QtGui.QGraphicsItem):
'''
Polygons that compose the map on Qt
'''
Type = QtGui.QGraphicsItem.UserType + 1
def __init__(self, plist, geocode, name, graphWidget):
QtGui.QGraphicsItem.__init__(self)
self.display = graphWidget
self.xmin, self.ymin = (array(plist)).min(axis=0)
self.xmax, self.ymax = (array(plist)).max(axis=0)
self.center = ((self.xmax + self.xmin) / 2., (self.ymax + self.ymin) / 2.)
self.width = self.xmax - self.xmin
self.height = self.ymax - self.ymin
self.plist = plist
self.pointList = [QtCore.QPointF(x, y) for x, y in plist]
self.polyg = QtGui.QPolygonF(self.pointList)
self.newPos = QtCore.QPointF()
self.lineColor = QtCore.Qt.black
self.fillColor = QtCore.Qt.yellow
self.geocode = geocode
self.name = name
self.setToolTip(str(self.geocode) + " - " + name)
self.setCursor(QtCore.Qt.PointingHandCursor)
self.setFlag(QtGui.QGraphicsItem.ItemIsSelectable)
self.setZValue(1)
def type(self):
return Polygon.Type
def shape(self):
path = QtGui.QPainterPath()
#path.addRectF(self.xmin, self.ymin,self.width, self.height)
path.addPolygon(self.polyg)
return path
def paint(self, painter, option, widget):
painter.setBrush(self.fillColor)
painter.setPen(QtGui.QPen(self.lineColor, 0))
painter.drawPolygon(self.polyg)
def mousePressEvent(self, event):
button = event.button()
# print button
scenepos = event.scenePos()
pos = event.pos()
self.select()
#QtGui.QGraphicsItem.mousePressEvent(self, event)
def select(self):
"""
Toggle selection of polygon
"""
if self.isSelected():
# print "unselect"
self.setSelected(False)
col = self.display.jet(self.display.timeseries[self.display.step][self.geocode])
self.fillColor = QtGui.QColor(int(col[0] * 255), int(col[1] * 255), int(col[2] * 255), int(col[3] * 255))
self.lineColor = QtCore.Qt.black
self.curve.detach()
self.display.qwtPlot.replot()
else:
# print "select"
self.setSelected(True)
# print self.isSelected()
self.fillColor = QtCore.Qt.green
self.lineColor = QtCore.Qt.white
self.display.addTsCurve(self.geocode, self.name)
self.display.qwtPlot.replot()
self.update()
def mouseReleaseEvent(self, event):
self.update()
#QtGui.QGraphicsItem.mouseReleaseEvent(self, event)
def mouseDoubleClickEvent(self, event):
"""
Center the display on the coordinates of the double click
"""
button = event.button()
scenepos = event.scenePos()
pos = event.pos()
self.display.mapView.centerOn(scenepos)
def boundingRect(self):
return QtCore.QRectF(self.xmin, self.ymin,
self.width, self.height)
class QtGraph(BaseGraph):
def __init__(self, display, **keywords):
"""
Construct a Graph. to be displayed with Python Visual
"""
BaseGraph.__init__(self)
self.display = display
self.nodes = []
self.polyDict = {} #dictionary of nodes by geocode
self.rect = [0, 0, 0, 0] # xmin,ymin,xmax,ymax
def getRect(self):
'''
Returns the bounding rectangle for the graph
'''
for n in self.nodes:
self.rect[0] = n.pos.x() if n.pos.x() < self.rect[0] else self.rect[0]
self.rect[1] = n.pos.y() if n.pos.y() < self.rect[1] else self.rect[1]
self.rect[2] = n.pos.x() if n.pos.x() > self.rect[2] else self.rect[2]
self.rect[3] = n.pos.y() if n.pos.y() > self.rect[3] else self.rect[3]
return self.rect
class QtNode(BaseNode):
"""
Physical model and visual representation of a node as a mass using Qt
"""
def __init__(self, graphw, geocode, name):
"""
Construct a mass.
"""
BaseNode.__init__(self, graphw)
self.edgeList = []
self.geocode = geocode
self.name = name
self.fillColor = QtGui.QColor(255, 255, 0)
self.size = 20
self.setToolTip(str(self.geocode) + " - " + name)
self.selected = False # using our own selection flag to avoid conflicts with other stuff
#self.setFlag(QtGui.QGraphicsItem.ItemIsSelectable)
def mousePressEvent(self, event):
if self.selected:
#print "unselect"
self.selected = False
if self.graph.display.timeseries:
col = self.graph.display.jet(self.graph.display.timeseries[self.graph.display.step][self.geocode])
self.fillColor = QtGui.QColor(int(col[0] * 255), int(col[1] * 255), int(col[2] * 255),
int(col[3] * 255))
else:
self.fillColor = QtGui.QColor(255, 255, 0)
self.lineColor = QtCore.Qt.black
self.curve.detach()
self.graph.display.qwtPlot.replot()
else:
#print "select"
self.selected = True
# print self.isSelected()
self.fillColor = QtGui.QColor(0, 255, 0)
self.lineColor = QtCore.Qt.white
self.graph.display.addTsCurve(self.geocode, self.name)
self.graph.display.qwtPlot.replot()
self.update()
# QtGui.QGraphicsItem.mousePressEvent(self, event)
def mouseReleaseEvent(self, event):
self.update()
#QtGui.QGraphicsItem.mouseReleaseEvent(self, event)
def type(self):
return QtNode.Type
def addEdge(self, edge):
self.edgeList.append(edge)
edge.adjust()
def edges(self):
return self.edgeList
def boundingRect(self):
adjust = 2.0
return QtCore.QRectF(-10 - adjust, -10 - adjust,
23 + adjust, 23 + adjust)
def shape(self):
path = QtGui.QPainterPath()
path.addEllipse(-10, -10, self.size, self.size)
return path
def paint(self, painter, option, widget):
painter.setPen(QtCore.Qt.NoPen)
painter.setBrush(QtCore.Qt.darkGray)
painter.drawEllipse(-7, -7, self.size, self.size)
gradient = QtGui.QRadialGradient(-3, -3, 10)
if option.state & QtGui.QStyle.State_Sunken:
gradient.setCenter(3, 3)
gradient.setFocalPoint(3, 3)
gradient.setColorAt(1, QtGui.QColor(self.fillColor).light(120))
gradient.setColorAt(0, QtGui.QColor(self.fillColor.darker(150)).light(120))
else:
gradient.setColorAt(0, self.fillColor)
gradient.setColorAt(1, self.fillColor.darker(150))
painter.setBrush(QtGui.QBrush(gradient))
painter.setPen(QtGui.QPen(QtCore.Qt.black, 0))
painter.drawEllipse(-10, -10, self.size, self.size)
def itemChange(self, change, value):
if change == QtGui.QGraphicsItem.ItemPositionChange:
pass
# for edge in self.edgeList:
# edge.adjust()
#self.graph.display.mapView.itemMoved()
return QtGui.QGraphicsItem.itemChange(self, change, value)
class QtEdge(QtGui.QGraphicsItem):
Pi = math.pi
TwoPi = 2.0 * Pi
Type = QtGui.QGraphicsItem.UserType + 2
def __init__(self, sourceNode, destNode):
QtGui.QGraphicsItem.__init__(self)
self.arrowSize = 10.0
self.sourcePoint = QtCore.QPointF()
self.destPoint = QtCore.QPointF()
self.setAcceptedMouseButtons(QtCore.Qt.NoButton)
self.source = sourceNode
self.dest = destNode
self.source.addEdge(self)
self.source.neighbors.append(self.dest)
self.dest.addEdge(self)
self.dest.neighbors.append(self.source)
self.adjust()
def type(self):
return QtEdge.Type
def sourceNode(self):
return self.source
def setSourceNode(self, node):
self.source = node
self.adjust()
def destNode(self):
return self.dest
def setDestNode(self, node):
self.dest = node
self.adjust()
def adjust(self):
if not self.source or not self.dest:
return
line = QtCore.QLineF(self.mapFromItem(self.source, 0, 0), self.mapFromItem(self.dest, 0, 0))
length = line.length()
if length == 0.0:
return
edgeOffset = QtCore.QPointF((line.dx() * 10) / length, (line.dy() * 10) / length)
self.prepareGeometryChange()
self.sourcePoint = line.p1() + edgeOffset
self.destPoint = line.p2() - edgeOffset
def boundingRect(self):
if not self.source or not self.dest:
return QtCore.QRectF()
penWidth = 1
extra = (penWidth + self.arrowSize) / 2.0
return QtCore.QRectF(self.sourcePoint,
QtCore.QSizeF(self.destPoint.x() - self.sourcePoint.x(),
self.destPoint.y() - self.sourcePoint.y())).normalized().adjusted(-extra,
-extra,
extra,
extra)
def paint(self, painter, option, widget):
if not self.source or not self.dest:
return
# Draw the line itself.
line = QtCore.QLineF(self.sourcePoint, self.destPoint)
if line.length() == 0.0:
return
painter.setPen(QtGui.QPen(QtCore.Qt.black, 1, QtCore.Qt.SolidLine, QtCore.Qt.RoundCap, QtCore.Qt.RoundJoin))
painter.drawLine(line)
# Draw the arrows if there's enough room.
angle = math.acos(line.dx() / line.length())
if line.dy() >= 0:
angle = QtEdge.TwoPi - angle
sourceArrowP1 = self.sourcePoint + QtCore.QPointF(math.sin(angle + QtEdge.Pi / 3) * self.arrowSize,
math.cos(angle + QtEdge.Pi / 3) * self.arrowSize)
sourceArrowP2 = self.sourcePoint + QtCore.QPointF(math.sin(angle + QtEdge.Pi - QtEdge.Pi / 3) * self.arrowSize,
math.cos(angle + QtEdge.Pi - QtEdge.Pi / 3) * self.arrowSize);
destArrowP1 = self.destPoint + QtCore.QPointF(math.sin(angle - QtEdge.Pi / 3) * self.arrowSize,
math.cos(angle - QtEdge.Pi / 3) * self.arrowSize)
destArrowP2 = self.destPoint + QtCore.QPointF(math.sin(angle - QtEdge.Pi + QtEdge.Pi / 3) * self.arrowSize,
math.cos(angle - QtEdge.Pi + QtEdge.Pi / 3) * self.arrowSize)
painter.setBrush(QtCore.Qt.black)
painter.drawPolygon(QtGui.QPolygonF([line.p1(), sourceArrowP1, sourceArrowP2]))
painter.drawPolygon(QtGui.QPolygonF([line.p2(), destArrowP1, destArrowP2]))
class MapServer:
"""
xmlrpc server
"""
def __init__(self, porta=50000):
self.server = SimpleXMLRPCServer(("", porta))
self.map = None
self.step = 0
self.jet = cm.get_cmap("jet", 50)
def start(self):
#self.server.register_function(self.map.drawStep)
self.server.serve_forever()
class ReplayWorker(QtCore.QThread):
def __init__(self, ts, arr, period=.20, parent=None):
QtCore.QThread.__init__(self, parent)
self.mutex = QtCore.QMutex()
self.condition = QtCore.QWaitCondition()
self.timeseries = ts
self.arrivals = arr
self.period = period
def __del__(self):
self.mutex.lock()
self.condition.wakeOne()
self.mutex.unlock()
self.wait()
def render(self):
locker = QtCore.QMutexLocker(self.mutex)
self.start()
def run(self):
for t in xrange(len(self.timeseries)):
self.mutex.lock()
self.emit(QtCore.SIGNAL("drawStep"), t, self.timeseries[t])
self.mutex.unlock()
if self.arrivals.has_key(t):
self.emit(QtCore.SIGNAL("flash"), t, self.arrivals[t])
# self.flashBorders(t, self.arrivals[t])
time.sleep(self.period)
self.mutex.lock()
self.condition.wait(self.mutex)
self.mutex.unlock()
if __name__ == '__main__':
app = QtGui.QApplication(sys.argv)
QtCore.qsrand(QtCore.QTime(0, 0, 0).secsTo(QtCore.QTime.currentTime()))
widget = MapWindow()
widget.drawMap('riozonas_LatLong.shp', 'NOME_ZONAS', 'ZONA_TRAFE')
# poslist = [(1, -50, -50, 'a'),(2, 0, -50, 'b'),(3, 50, -50, 'c'),(4, -50, 0,'d'),(5, 0, 0, 'e'),(6, 50, 0, 'f'),(7, -50, 50, 'g'),(8, 0, 50, 'h'),(9, 50, 50, 'i')]
# elist = [(0,1),(1,2),(1,4),(2,5),(3,0),(3,4),(4,5),(4,7),(5,8),(6,3),(7,6),(8,7)]
# widget.drawGraph(poslist, elist)
widget.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/display.ui 0000664 0000000 0000000 00000014061 12720633740 017070 0 ustar root root 0000000 0000000
Form
0
0
820
739
0
0
100
600
Simulation Display
-
Geographical View
-
Qt::Horizontal
Qt::Vertical
CrossCursor
true
-
Qt::Horizontal
QSlider::TicksBelow
0
-
-
0
0
Time Series
-
Qt::Horizontal
461
23
-
-
-
Show global series
true
QLayout::SetDefaultConstraint
-
0
0
Replay
-
0
0
Stop
-
0
400
Check Nodes to plot their time-series
true
0
0
81
394
0
0
0
0
-
Qt::Vertical
20
521
QwtPlot
QFrame
epigrass-2.4.7/Epigrass/egicon.png 0000664 0000000 0000000 00000000425 12720633740 017035 0 ustar root root 0000000 0000000 PNG
IHDR szz IDATXY D UU 9 U"gbV)_f Ø @DY! 20.0:
edgeOffset = QtCore.QPointF((line.dx() * 10) / length,(line.dy() * 10) / length)
self.sourcePoint = line.p1() + edgeOffset
self.destPoint = line.p2() - edgeOffset
else:
self.sourcePoint = line.p1()
self.destPoint = line.p1()
def boundingRect(self):
if not self.source or not self.dest:
return QtCore.QRectF()
penWidth = 1.0
extra = (penWidth + self.arrowSize) / 2.0
return QtCore.QRectF(self.sourcePoint,
QtCore.QSizeF(self.destPoint.x() - self.sourcePoint.x(),
self.destPoint.y() - self.sourcePoint.y())).normalized().adjusted(-extra, -extra, extra, extra)
def paint(self, painter, option, widget):
if not self.source or not self.dest:
return
# Draw the line itself.
line = QtCore.QLineF(self.sourcePoint, self.destPoint)
if line.length() == 0.0:
return
painter.setPen(QtGui.QPen(QtCore.Qt.black, 1, QtCore.Qt.SolidLine,
QtCore.Qt.RoundCap, QtCore.Qt.RoundJoin))
painter.drawLine(line)
# Draw the arrows if there's enough room.
angle = math.acos(line.dx() / line.length())
if line.dy() >= 0:
angle = Edge.TwoPi - angle
sourceArrowP1 = self.sourcePoint + QtCore.QPointF(sin(angle + pi / 3) * self.arrowSize,
cos(angle + pi / 3) * self.arrowSize)
sourceArrowP2 = self.sourcePoint + QtCore.QPointF(sin(angle + pi - pi / 3) * self.arrowSize,
cos(angle + pi - pi / 3) * self.arrowSize);
destArrowP1 = self.destPoint + QtCore.QPointF(sin(angle - pi / 3) * self.arrowSize,
cos(angle - pi / 3) * self.arrowSize)
destArrowP2 = self.destPoint + QtCore.QPointF(sin(angle - pi + pi / 3) * self.arrowSize,
cos(angle - pi + pi / 3) * self.arrowSize)
painter.setBrush(QtCore.Qt.black)
painter.drawPolygon(QtGui.QPolygonF([line.p1(), sourceArrowP1, sourceArrowP2]))
painter.drawPolygon(QtGui.QPolygonF([line.p2(), destArrowP1, destArrowP2]))
class Node(QtGui.QGraphicsItem):
Type = QtGui.QGraphicsItem.UserType + 1
def __init__(self, graphWidget):
super(Node, self).__init__()
self.graph = graphWidget
self.edgeList = []
self.newPos = QtCore.QPointF()
self.setFlag(QtGui.QGraphicsItem.ItemIsMovable)
self.setFlag(QtGui.QGraphicsItem.ItemSendsGeometryChanges)
self.setCacheMode(QtGui.QGraphicsItem.DeviceCoordinateCache)
self.setZValue(1)
def type(self):
return Node.Type
def addEdge(self, edge):
self.edgeList.append(edge)
edge.adjust()
def edges(self):
return self.edgeList
def calculateForces(self):
if not self.scene() or self.scene().mouseGrabberItem() is self:
self.newPos = self.pos()
return
# Sum up all forces pushing this item away.
xvel = 0.0
yvel = 0.0
for item in self.scene().items():
if not isinstance(item, Node):
continue
line = QtCore.QLineF(self.mapFromItem(item, 0, 0),
QtCore.QPointF(0, 0))
dx = line.dx()
dy = line.dy()
l = 2.0 * (dx * dx + dy * dy)
if l > 0:
xvel += (dx * 150.0) / l
yvel += (dy * 150.0) / l
# Now subtract all forces pulling items together.
weight = (len(self.edgeList) + 1) * 10.0
for edge in self.edgeList:
if edge.sourceNode() is self:
pos = self.mapFromItem(edge.destNode(), 0, 0)
else:
pos = self.mapFromItem(edge.sourceNode(), 0, 0)
xvel += pos.x() / weight
yvel += pos.y() / weight
if QtCore.qAbs(xvel) < 0.1 and QtCore.qAbs(yvel) < 0.1:
xvel = yvel = 0.0
sceneRect = self.scene().sceneRect()
self.newPos = self.pos() + QtCore.QPointF(xvel, yvel)
self.newPos.setX(min(max(self.newPos.x(), sceneRect.left() + 10), sceneRect.right() - 10))
self.newPos.setY(min(max(self.newPos.y(), sceneRect.top() + 10), sceneRect.bottom() - 10))
def advance(self):
if self.newPos == self.pos():
return False
self.setPos(self.newPos)
return True
def boundingRect(self):
adjust = 2.0
return QtCore.QRectF(-10 - adjust, -10 - adjust, 23 + adjust,
23 + adjust)
def shape(self):
path = QtGui.QPainterPath()
path.addEllipse(-10, -10, 20, 20)
return path
def paint(self, painter, option, widget):
painter.setPen(QtCore.Qt.NoPen)
painter.setBrush(QtCore.Qt.darkGray)
painter.drawEllipse(-7, -7, 20, 20)
gradient = QtGui.QRadialGradient(-3, -3, 10)
if option.state & QtGui.QStyle.State_Sunken:
gradient.setCenter(3, 3)
gradient.setFocalPoint(3, 3)
gradient.setColorAt(1, QtGui.QColor(QtCore.Qt.yellow).light(120))
gradient.setColorAt(0, QtGui.QColor(QtCore.Qt.darkYellow).light(120))
else:
gradient.setColorAt(0, QtCore.Qt.yellow)
gradient.setColorAt(1, QtCore.Qt.darkYellow)
painter.setBrush(QtGui.QBrush(gradient))
painter.setPen(QtGui.QPen(QtCore.Qt.black, 0))
painter.drawEllipse(-10, -10, 20, 20)
def itemChange(self, change, value):
if change == QtGui.QGraphicsItem.ItemPositionHasChanged:
for edge in self.edgeList:
edge.adjust()
self.graph.itemMoved()
return super(Node, self).itemChange(change, value)
def mousePressEvent(self, event):
self.update()
super(Node, self).mousePressEvent(event)
def mouseReleaseEvent(self, event):
self.update()
super(Node, self).mouseReleaseEvent(event)
class GraphWidget(QtGui.QGraphicsView):
def __init__(self):
super(GraphWidget, self).__init__()
self.timerId = 0
scene = QtGui.QGraphicsScene(self)
#~ scene.setItemIndexMethod(QtGui.QGraphicsScene.NoIndex)
scene.setSceneRect(-200, -200, 400, 400)
self.setScene(scene)
self.setCacheMode(QtGui.QGraphicsView.CacheBackground)
self.setViewportUpdateMode(QtGui.QGraphicsView.BoundingRectViewportUpdate)
self.setRenderHint(QtGui.QPainter.Antialiasing)
self.setTransformationAnchor(QtGui.QGraphicsView.AnchorUnderMouse)
self.setResizeAnchor(QtGui.QGraphicsView.AnchorViewCenter)
node1 = Node(self)
node2 = Node(self)
node3 = Node(self)
node4 = Node(self)
self.centerNode = Node(self)
node6 = Node(self)
node7 = Node(self)
node8 = Node(self)
node9 = Node(self)
scene.addItem(node1)
scene.addItem(node2)
scene.addItem(node3)
scene.addItem(node4)
scene.addItem(self.centerNode)
scene.addItem(node6)
scene.addItem(node7)
scene.addItem(node8)
scene.addItem(node9)
scene.addItem(Edge(node1, node2))
scene.addItem(Edge(node2, node3))
scene.addItem(Edge(node2, self.centerNode))
scene.addItem(Edge(node3, node6))
scene.addItem(Edge(node4, node1))
scene.addItem(Edge(node4, self.centerNode))
scene.addItem(Edge(self.centerNode, node6))
scene.addItem(Edge(self.centerNode, node8))
scene.addItem(Edge(node6, node9))
scene.addItem(Edge(node7, node4))
scene.addItem(Edge(node8, node7))
scene.addItem(Edge(node9, node8))
node1.setPos(-50, -50)
node2.setPos(0, -50)
node3.setPos(50, -50)
node4.setPos(-50, 0)
self.centerNode.setPos(0, 0)
node6.setPos(50, 0)
node7.setPos(-50, 50)
node8.setPos(0, 50)
node9.setPos(50, 50)
self.scale(0.8, 0.8)
self.setMinimumSize(400, 400)
self.setWindowTitle("Elastic Nodes")
def itemMoved(self):
if not self.timerId:
self.timerId = self.startTimer(1000 / 100)
def keyPressEvent(self, event):
key = event.key()
if key == QtCore.Qt.Key_Up:
self.centerNode.moveBy(0, -20)
elif key == QtCore.Qt.Key_Down:
self.centerNode.moveBy(0, 20)
elif key == QtCore.Qt.Key_Left:
self.centerNode.moveBy(-20, 0)
elif key == QtCore.Qt.Key_Right:
self.centerNode.moveBy(20, 0)
elif key == QtCore.Qt.Key_Plus:
self.scaleView(1.2)
elif key == QtCore.Qt.Key_Minus:
self.scaleView(1 / 1.2)
elif key == QtCore.Qt.Key_Space or key == QtCore.Qt.Key_Enter:
for item in self.scene().items():
if isinstance(item, Node):
item.setPos(-150 + QtCore.qrand() % 300, -150 + QtCore.qrand() % 300)
else:
super(GraphWidget, self).keyPressEvent(event)
def timerEvent(self, event):
nodes = [item for item in self.scene().items() if isinstance(item, Node)]
for node in nodes:
node.calculateForces()
itemsMoved = False
for node in nodes:
if node.advance():
itemsMoved = True
if not itemsMoved:
self.killTimer(self.timerId)
self.timerId = 0
def wheelEvent(self, event):
self.scaleView(math.pow(2.0, -event.delta() / 240.0))
def drawBackground(self, painter, rect):
# Shadow.
sceneRect = self.sceneRect()
rightShadow = QtCore.QRectF(sceneRect.right(), sceneRect.top() + 5, 5,
sceneRect.height())
bottomShadow = QtCore.QRectF(sceneRect.left() + 5, sceneRect.bottom(),
sceneRect.width(), 5)
if rightShadow.intersects(rect) or rightShadow.contains(rect):
painter.fillRect(rightShadow, QtCore.Qt.darkGray)
if bottomShadow.intersects(rect) or bottomShadow.contains(rect):
painter.fillRect(bottomShadow, QtCore.Qt.darkGray)
# Fill.
gradient = QtGui.QLinearGradient(sceneRect.topLeft(),
sceneRect.bottomRight())
gradient.setColorAt(0, QtCore.Qt.white)
gradient.setColorAt(1, QtCore.Qt.lightGray)
painter.fillRect(rect.intersect(sceneRect), QtGui.QBrush(gradient))
painter.setBrush(QtCore.Qt.NoBrush)
painter.drawRect(sceneRect)
# Text.
textRect = QtCore.QRectF(sceneRect.left() + 4, sceneRect.top() + 4,
sceneRect.width() - 4, sceneRect.height() - 4)
message = "Click and drag the nodes around, and zoom with the " \
"mouse wheel or the '+' and '-' keys"
font = painter.font()
font.setBold(True)
font.setPointSize(14)
painter.setFont(font)
painter.setPen(QtCore.Qt.lightGray)
painter.drawText(textRect.translated(2, 2), message)
painter.setPen(QtCore.Qt.black)
painter.drawText(textRect, message)
def scaleView(self, scaleFactor):
factor = self.matrix().scale(scaleFactor, scaleFactor).mapRect(QtCore.QRectF(0, 0, 1, 1)).width()
if factor < 0.07 or factor > 100:
return
self.scale(scaleFactor, scaleFactor)
if __name__ == '__main__':
import sys
app = QtGui.QApplication(sys.argv)
QtCore.qsrand(QtCore.QTime(0,0,0).secsTo(QtCore.QTime.currentTime()))
widget = GraphWidget()
widget.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/elasticnodes.py.bak 0000775 0000000 0000000 00000035331 12754332123 020653 0 ustar root root 0000000 0000000 #!/usr/bin/env python
#############################################################################
##
## Copyright (C) 2010 Riverbank Computing Limited.
## Copyright (C) 2010 Nokia Corporation and/or its subsidiary(-ies).
## All rights reserved.
##
## This file is part of the examples of PyQt.
##
## $QT_BEGIN_LICENSE:BSD$
## You may use this file under the terms of the BSD license as follows:
##
## "Redistribution and use in source and binary forms, with or without
## modification, are permitted provided that the following conditions are
## met:
## * Redistributions of source code must retain the above copyright
## notice, this list of conditions and the following disclaimer.
## * Redistributions in binary form must reproduce the above copyright
## notice, this list of conditions and the following disclaimer in
## the documentation and/or other materials provided with the
## distribution.
## * Neither the name of Nokia Corporation and its Subsidiary(-ies) nor
## the names of its contributors may be used to endorse or promote
## products derived from this software without specific prior written
## permission.
##
## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
## "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
## LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
## A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
## OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
## SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
## LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
## DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
## THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
## (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
## OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE."
## $QT_END_LICENSE$
##
#############################################################################
import math
from math import sin,cos,pi
from PyQt4 import QtCore, QtGui
class Edge(QtGui.QGraphicsItem):
Pi = math.pi
TwoPi = 2.0 * Pi
Type = QtGui.QGraphicsItem.UserType + 2
def __init__(self, sourceNode, destNode):
super(Edge, self).__init__()
self.arrowSize = 10.0
self.sourcePoint = QtCore.QPointF()
self.destPoint = QtCore.QPointF()
self.setAcceptedMouseButtons(QtCore.Qt.NoButton)
self.source = sourceNode
self.dest = destNode
self.source.addEdge(self)
self.dest.addEdge(self)
self.adjust()
def type(self):
return Edge.Type
def sourceNode(self):
return self.source
def setSourceNode(self, node):
self.source = node
self.adjust()
def destNode(self):
return self.dest
def setDestNode(self, node):
self.dest = node
self.adjust()
def adjust(self):
if not self.source or not self.dest:
return
line = QtCore.QLineF(self.mapFromItem(self.source, 0, 0),
self.mapFromItem(self.dest, 0, 0))
length = line.length()
self.prepareGeometryChange()
if length > 20.0:
edgeOffset = QtCore.QPointF((line.dx() * 10) / length,(line.dy() * 10) / length)
self.sourcePoint = line.p1() + edgeOffset
self.destPoint = line.p2() - edgeOffset
else:
self.sourcePoint = line.p1()
self.destPoint = line.p1()
def boundingRect(self):
if not self.source or not self.dest:
return QtCore.QRectF()
penWidth = 1.0
extra = (penWidth + self.arrowSize) / 2.0
return QtCore.QRectF(self.sourcePoint,
QtCore.QSizeF(self.destPoint.x() - self.sourcePoint.x(),
self.destPoint.y() - self.sourcePoint.y())).normalized().adjusted(-extra, -extra, extra, extra)
def paint(self, painter, option, widget):
if not self.source or not self.dest:
return
# Draw the line itself.
line = QtCore.QLineF(self.sourcePoint, self.destPoint)
if line.length() == 0.0:
return
painter.setPen(QtGui.QPen(QtCore.Qt.black, 1, QtCore.Qt.SolidLine,
QtCore.Qt.RoundCap, QtCore.Qt.RoundJoin))
painter.drawLine(line)
# Draw the arrows if there's enough room.
angle = math.acos(line.dx() / line.length())
if line.dy() >= 0:
angle = Edge.TwoPi - angle
sourceArrowP1 = self.sourcePoint + QtCore.QPointF(sin(angle + pi / 3) * self.arrowSize,
cos(angle + pi / 3) * self.arrowSize)
sourceArrowP2 = self.sourcePoint + QtCore.QPointF(sin(angle + pi - pi / 3) * self.arrowSize,
cos(angle + pi - pi / 3) * self.arrowSize);
destArrowP1 = self.destPoint + QtCore.QPointF(sin(angle - pi / 3) * self.arrowSize,
cos(angle - pi / 3) * self.arrowSize)
destArrowP2 = self.destPoint + QtCore.QPointF(sin(angle - pi + pi / 3) * self.arrowSize,
cos(angle - pi + pi / 3) * self.arrowSize)
painter.setBrush(QtCore.Qt.black)
painter.drawPolygon(QtGui.QPolygonF([line.p1(), sourceArrowP1, sourceArrowP2]))
painter.drawPolygon(QtGui.QPolygonF([line.p2(), destArrowP1, destArrowP2]))
class Node(QtGui.QGraphicsItem):
Type = QtGui.QGraphicsItem.UserType + 1
def __init__(self, graphWidget):
super(Node, self).__init__()
self.graph = graphWidget
self.edgeList = []
self.newPos = QtCore.QPointF()
self.setFlag(QtGui.QGraphicsItem.ItemIsMovable)
self.setFlag(QtGui.QGraphicsItem.ItemSendsGeometryChanges)
self.setCacheMode(QtGui.QGraphicsItem.DeviceCoordinateCache)
self.setZValue(1)
def type(self):
return Node.Type
def addEdge(self, edge):
self.edgeList.append(edge)
edge.adjust()
def edges(self):
return self.edgeList
def calculateForces(self):
if not self.scene() or self.scene().mouseGrabberItem() is self:
self.newPos = self.pos()
return
# Sum up all forces pushing this item away.
xvel = 0.0
yvel = 0.0
for item in self.scene().items():
if not isinstance(item, Node):
continue
line = QtCore.QLineF(self.mapFromItem(item, 0, 0),
QtCore.QPointF(0, 0))
dx = line.dx()
dy = line.dy()
l = 2.0 * (dx * dx + dy * dy)
if l > 0:
xvel += (dx * 150.0) / l
yvel += (dy * 150.0) / l
# Now subtract all forces pulling items together.
weight = (len(self.edgeList) + 1) * 10.0
for edge in self.edgeList:
if edge.sourceNode() is self:
pos = self.mapFromItem(edge.destNode(), 0, 0)
else:
pos = self.mapFromItem(edge.sourceNode(), 0, 0)
xvel += pos.x() / weight
yvel += pos.y() / weight
if QtCore.qAbs(xvel) < 0.1 and QtCore.qAbs(yvel) < 0.1:
xvel = yvel = 0.0
sceneRect = self.scene().sceneRect()
self.newPos = self.pos() + QtCore.QPointF(xvel, yvel)
self.newPos.setX(min(max(self.newPos.x(), sceneRect.left() + 10), sceneRect.right() - 10))
self.newPos.setY(min(max(self.newPos.y(), sceneRect.top() + 10), sceneRect.bottom() - 10))
def advance(self):
if self.newPos == self.pos():
return False
self.setPos(self.newPos)
return True
def boundingRect(self):
adjust = 2.0
return QtCore.QRectF(-10 - adjust, -10 - adjust, 23 + adjust,
23 + adjust)
def shape(self):
path = QtGui.QPainterPath()
path.addEllipse(-10, -10, 20, 20)
return path
def paint(self, painter, option, widget):
painter.setPen(QtCore.Qt.NoPen)
painter.setBrush(QtCore.Qt.darkGray)
painter.drawEllipse(-7, -7, 20, 20)
gradient = QtGui.QRadialGradient(-3, -3, 10)
if option.state & QtGui.QStyle.State_Sunken:
gradient.setCenter(3, 3)
gradient.setFocalPoint(3, 3)
gradient.setColorAt(1, QtGui.QColor(QtCore.Qt.yellow).light(120))
gradient.setColorAt(0, QtGui.QColor(QtCore.Qt.darkYellow).light(120))
else:
gradient.setColorAt(0, QtCore.Qt.yellow)
gradient.setColorAt(1, QtCore.Qt.darkYellow)
painter.setBrush(QtGui.QBrush(gradient))
painter.setPen(QtGui.QPen(QtCore.Qt.black, 0))
painter.drawEllipse(-10, -10, 20, 20)
def itemChange(self, change, value):
if change == QtGui.QGraphicsItem.ItemPositionHasChanged:
for edge in self.edgeList:
edge.adjust()
self.graph.itemMoved()
return super(Node, self).itemChange(change, value)
def mousePressEvent(self, event):
self.update()
super(Node, self).mousePressEvent(event)
def mouseReleaseEvent(self, event):
self.update()
super(Node, self).mouseReleaseEvent(event)
class GraphWidget(QtGui.QGraphicsView):
def __init__(self):
super(GraphWidget, self).__init__()
self.timerId = 0
scene = QtGui.QGraphicsScene(self)
#~ scene.setItemIndexMethod(QtGui.QGraphicsScene.NoIndex)
scene.setSceneRect(-200, -200, 400, 400)
self.setScene(scene)
self.setCacheMode(QtGui.QGraphicsView.CacheBackground)
self.setViewportUpdateMode(QtGui.QGraphicsView.BoundingRectViewportUpdate)
self.setRenderHint(QtGui.QPainter.Antialiasing)
self.setTransformationAnchor(QtGui.QGraphicsView.AnchorUnderMouse)
self.setResizeAnchor(QtGui.QGraphicsView.AnchorViewCenter)
node1 = Node(self)
node2 = Node(self)
node3 = Node(self)
node4 = Node(self)
self.centerNode = Node(self)
node6 = Node(self)
node7 = Node(self)
node8 = Node(self)
node9 = Node(self)
scene.addItem(node1)
scene.addItem(node2)
scene.addItem(node3)
scene.addItem(node4)
scene.addItem(self.centerNode)
scene.addItem(node6)
scene.addItem(node7)
scene.addItem(node8)
scene.addItem(node9)
scene.addItem(Edge(node1, node2))
scene.addItem(Edge(node2, node3))
scene.addItem(Edge(node2, self.centerNode))
scene.addItem(Edge(node3, node6))
scene.addItem(Edge(node4, node1))
scene.addItem(Edge(node4, self.centerNode))
scene.addItem(Edge(self.centerNode, node6))
scene.addItem(Edge(self.centerNode, node8))
scene.addItem(Edge(node6, node9))
scene.addItem(Edge(node7, node4))
scene.addItem(Edge(node8, node7))
scene.addItem(Edge(node9, node8))
node1.setPos(-50, -50)
node2.setPos(0, -50)
node3.setPos(50, -50)
node4.setPos(-50, 0)
self.centerNode.setPos(0, 0)
node6.setPos(50, 0)
node7.setPos(-50, 50)
node8.setPos(0, 50)
node9.setPos(50, 50)
self.scale(0.8, 0.8)
self.setMinimumSize(400, 400)
self.setWindowTitle("Elastic Nodes")
def itemMoved(self):
if not self.timerId:
self.timerId = self.startTimer(1000 / 100)
def keyPressEvent(self, event):
key = event.key()
if key == QtCore.Qt.Key_Up:
self.centerNode.moveBy(0, -20)
elif key == QtCore.Qt.Key_Down:
self.centerNode.moveBy(0, 20)
elif key == QtCore.Qt.Key_Left:
self.centerNode.moveBy(-20, 0)
elif key == QtCore.Qt.Key_Right:
self.centerNode.moveBy(20, 0)
elif key == QtCore.Qt.Key_Plus:
self.scaleView(1.2)
elif key == QtCore.Qt.Key_Minus:
self.scaleView(1 / 1.2)
elif key == QtCore.Qt.Key_Space or key == QtCore.Qt.Key_Enter:
for item in self.scene().items():
if isinstance(item, Node):
item.setPos(-150 + QtCore.qrand() % 300, -150 + QtCore.qrand() % 300)
else:
super(GraphWidget, self).keyPressEvent(event)
def timerEvent(self, event):
nodes = [item for item in self.scene().items() if isinstance(item, Node)]
for node in nodes:
node.calculateForces()
itemsMoved = False
for node in nodes:
if node.advance():
itemsMoved = True
if not itemsMoved:
self.killTimer(self.timerId)
self.timerId = 0
def wheelEvent(self, event):
self.scaleView(math.pow(2.0, -event.delta() / 240.0))
def drawBackground(self, painter, rect):
# Shadow.
sceneRect = self.sceneRect()
rightShadow = QtCore.QRectF(sceneRect.right(), sceneRect.top() + 5, 5,
sceneRect.height())
bottomShadow = QtCore.QRectF(sceneRect.left() + 5, sceneRect.bottom(),
sceneRect.width(), 5)
if rightShadow.intersects(rect) or rightShadow.contains(rect):
painter.fillRect(rightShadow, QtCore.Qt.darkGray)
if bottomShadow.intersects(rect) or bottomShadow.contains(rect):
painter.fillRect(bottomShadow, QtCore.Qt.darkGray)
# Fill.
gradient = QtGui.QLinearGradient(sceneRect.topLeft(),
sceneRect.bottomRight())
gradient.setColorAt(0, QtCore.Qt.white)
gradient.setColorAt(1, QtCore.Qt.lightGray)
painter.fillRect(rect.intersect(sceneRect), QtGui.QBrush(gradient))
painter.setBrush(QtCore.Qt.NoBrush)
painter.drawRect(sceneRect)
# Text.
textRect = QtCore.QRectF(sceneRect.left() + 4, sceneRect.top() + 4,
sceneRect.width() - 4, sceneRect.height() - 4)
message = "Click and drag the nodes around, and zoom with the " \
"mouse wheel or the '+' and '-' keys"
font = painter.font()
font.setBold(True)
font.setPointSize(14)
painter.setFont(font)
painter.setPen(QtCore.Qt.lightGray)
painter.drawText(textRect.translated(2, 2), message)
painter.setPen(QtCore.Qt.black)
painter.drawText(textRect, message)
def scaleView(self, scaleFactor):
factor = self.matrix().scale(scaleFactor, scaleFactor).mapRect(QtCore.QRectF(0, 0, 1, 1)).width()
if factor < 0.07 or factor > 100:
return
self.scale(scaleFactor, scaleFactor)
if __name__ == '__main__':
import sys
app = QtGui.QApplication(sys.argv)
QtCore.qsrand(QtCore.QTime(0,0,0).secsTo(QtCore.QTime.currentTime()))
widget = GraphWidget()
widget.show()
sys.exit(app.exec_())
epigrass-2.4.7/Epigrass/epgeditor.py 0000664 0000000 0000000 00000020120 12772733376 017426 0 ustar root root 0000000 0000000 #!/usr/bin/env python
# -*- coding: utf-8 -*-
try:
from PyQt4 import QtCore, QtGui
# from PyQt4.QtGui import *
except ImportError:
print "Please install PyQT 4"
from Epigrass.Ui_epgeditor import Ui_MainWindow
from Epigrass.Ui_about4 import Ui_aboutDialog as aboutDialog
import ConfigParser
import StringIO
import epigrass_rc
class Editor(QtGui.QMainWindow,Ui_MainWindow):
def __init__(self, argv):
QtGui.QWidget.__init__(self)
self.setupUi(self)
self.cp = ConfigParser.SafeConfigParser()
if len(argv) <2:
self.fname = ''
else:
self.fname = argv[1]
self.fillTree(self.fname)
QtCore.QObject.connect(self.exitButton,QtCore.SIGNAL("clicked()"),self.close)
self.editing = None
self.helpBrowser.setSource(QtCore.QUrl("qrc:/HelpEpg.html"))
def checkScript(self):
"""
Checks the loaded script for required headers and variables
"""
self.fixed = sections = {'TRANSPORTATION MODEL':{'stochastic':0, 'speed':0, 'dotransp':1},
'THE WORLD':{'sites':'', 'shapefile':'', 'encoding':'', 'edges':''},
'SIMULATION AND OUTPUT':{'steps':50, 'siterep':[], 'report':0, 'replicas':0, 'randseed':0, 'outdir':'', 'mysqlout':0, 'batch':[]},
'MODEL PARAMETERS':{'w':0, 'r':1, 'p':0, 'e':1, 'delta':0, 'beta':0, 'b':0, 'alpha':1},
'INITIAL CONDITIONS':{'s':'N', 'i':0, 'e':0},
'EPIDEMIOLOGICAL MODEL':{'modtype':'SIR'},
'EPIDEMIC EVENTS':{'vaccinate':[], 'seed':[], 'quarantine':[]}}
for i in sections.items():
try:
assert (self.cp.has_section(i[0]))
for v in i[1].items():
try:
self.cp.get(i[0], v[0])
except:
QtGui.QMessageBox.information(None,
self.trUtf8("Required variable missing"),
self.trUtf8("""Variable %s was missing. Variable created and value set to default"""%v))
self.cp.set(i[0], v[0],str(v[1]))
except AssertionError:
QtGui.QMessageBox.information(None,
self.trUtf8("Required section missing"),
self.trUtf8("""Section %s was missing. It was added to your file with default values for its variables."""%i[0]))
self.cp.add_section(i[0])
for j in i[1].items():
self.cp.set (i[0],j[0] , str(j[1]))
def fillTree(self, fname):
"""
Fills the tree from the configuration file's
contents.
Returns a ConfigParser object
"""
self.treeWidget.clear()
self.cp.read(fname)
self.checkScript()
self.updateViewer()
for sec in self.cp.sections():
topitem = QtGui.QTreeWidgetItem(self.treeWidget)
topitem.setText(0, sec)
topitem.setText(1, "---")
topitem.setText(2, "Section Header")
self.treeWidget.addTopLevelItem(topitem)
for opt in self.cp.options(sec):
chitem = QtGui.QTreeWidgetItem(topitem)
chitem.setText(0, opt)
pos = self.cp.get(sec,opt).find('#')
if pos >=0:
value = self.cp.get(sec,opt)[:pos]
comment = self.cp.get(sec,opt)[pos:]
else:
value = self.cp.get(sec,opt)
comment = "variable"
chitem.setText(1, value)
chitem.setText(2, comment)
def updateViewer(self):
vf = StringIO.StringIO()
self.cp.write(vf)
self.epgView.setPlainText(vf.getvalue())
vf.close()
@QtCore.pyqtSignature("")
def on_action_About_activated(self):
QtGui.QMessageBox.about(None,
self.trUtf8("About .EPG Editor"),
self.trUtf8("""This editor is for creating or modifying .epg files."""))
@QtCore.pyqtSignature("")
def on_actionAbout_Epigrass_activated(self):
aboutD = QtGui.QDialog()
ab = aboutDialog()
ab.setupUi(aboutD)
aboutD.show()
aboutD.exec_()
@QtCore.pyqtSignature("")
def on_action_Open_epg_File_activated(self):
# print "clicked"
fname = str(QtGui.QFileDialog.getOpenFileName(\
None,
self.trUtf8("Open .epg File"),
QtCore.QString(),
self.trUtf8("*.epg"),
None))
if fname:
self.fillTree(fname)
self.fname = fname
@QtCore.pyqtSignature("")
def on_action_New_activated(self):
fname = QtGui.QInputDialog.getText(\
None,
self.trUtf8("File Name"),
self.trUtf8("Enter a name for you new .epg file:"),
QtGui.QLineEdit.Normal)
print fname
if fname[1]:
fname = str(fname[0])
if not fname.endswith('.epg'):
fname+='.epg'
self.fillTree(fname)
@QtCore.pyqtSignature("")
def on_addVButton_clicked(self):
"""
Add a new variable to the current section
"""
item = QtGui.QInputDialog.getItem(\
None,
self.trUtf8("Choose Section"),
self.trUtf8("Select a section to which you want to add a variable:"),
self.fixed.keys(),
0, True)
if item[1]:
sec = str(item[0])
resp = QtGui.QInputDialog.getText(\
None,
self.trUtf8("Variable Name"),
self.trUtf8("Enter the name of the variable to be created"),
QtGui.QLineEdit.Normal)
if resp[1]:
nam = str(resp[0])
self.cp.set(sec, nam, '')
self.updateViewer()
# print sec, type(sec)
secit = self.treeWidget.findItems(sec, QtCore.Qt.MatchExactly, 0)[0]
child = QtGui.QTreeWidgetItem(secit)
child.setText(0, nam)
secit.addChild(child)
self.treeWidget.setCurrentItem(child)
self.treeWidget.scrollToItem(child)
self.on_treeWidget_itemDoubleClicked(child, 1)
# print sec, nam
@QtCore.pyqtSignature("")
def on_action_Help_activated(self):
self.tabWidget.setCurrentIndex(2)
@QtCore.pyqtSignature("")
def on_action_Exit_activated(self):
self.close()
@QtCore.pyqtSignature("")
def on_action_Save_activated(self):
if not self.fname:
self.fname = str(QtGui.QFileDialog.getSaveFileName(\
None,
self.trUtf8("Save File as"),
self.fname,
self.trUtf8("*.epg"),
None)
)
fo = open(self.fname, 'w')
self.cp.write(fo)
fo.close()
@QtCore.pyqtSignature("QTreeWidgetItem *, int")
def on_treeWidget_itemDoubleClicked(self, it, col):
# print it, col
if not it.parent():
return #cannot edit sections
else:
if col == 0 and (str(it.text(0)) in self.fixed[str(it.parent().text(0))]):
return#cannot edit required variables names
self.editing=(it, col)
self.treeWidget.openPersistentEditor(it, col)
@QtCore.pyqtSignature("")
def on_treeWidget_itemSelectionChanged(self):
if self.editing:
if str(self.editing[0].text(2)).startswith('#'): #Keep comments if they exist.
self.cp.set(str(self.editing[0].parent().text(0)),str(self.editing[0].text(0)) , str(self.editing[0].text(1))+'\t'+str(self.editing[0].text(2)))
else:
self.cp.set(str(self.editing[0].parent().text(0)),str(self.editing[0].text(0)) , str(self.editing[0].text(1)))
self.treeWidget.closePersistentEditor(*self.editing)
self.editing = None
self.on_action_Save_activated()
self.updateViewer()
def main():
import sys
app = QtGui.QApplication(sys.argv)
Form = Editor(sys.argv)
Form.show()
sys.exit(app.exec_())
if __name__ == "__main__":
main()
epigrass-2.4.7/Epigrass/epgeditor.py.bak 0000664 0000000 0000000 00000020120 12720633740 020145 0 ustar root root 0000000 0000000 #!/usr/bin/env python
# -*- coding: utf-8 -*-
try:
from PyQt4 import QtCore, QtGui
# from PyQt4.QtGui import *
except ImportError:
print "Please install PyQT 4"
from Epigrass.Ui_epgeditor import Ui_MainWindow
from Epigrass.Ui_about4 import Ui_aboutDialog as aboutDialog
import ConfigParser
import StringIO
import epigrass_rc
class Editor(QtGui.QMainWindow,Ui_MainWindow):
def __init__(self, argv):
QtGui.QWidget.__init__(self)
self.setupUi(self)
self.cp = ConfigParser.SafeConfigParser()
if len(argv) <2:
self.fname = ''
else:
self.fname = argv[1]
self.fillTree(self.fname)
QtCore.QObject.connect(self.exitButton,QtCore.SIGNAL("clicked()"),self.close)
self.editing = None
self.helpBrowser.setSource(QtCore.QUrl("qrc:/HelpEpg.html"))
def checkScript(self):
"""
Checks the loaded script for required headers and variables
"""
self.fixed = sections = {'TRANSPORTATION MODEL':{'stochastic':0, 'speed':0, 'dotransp':1},
'THE WORLD':{'sites':'', 'shapefile':'', 'encoding':'', 'edges':''},
'SIMULATION AND OUTPUT':{'steps':50, 'siterep':[], 'report':0, 'replicas':0, 'randseed':0, 'outdir':'', 'mysqlout':0, 'batch':[]},
'MODEL PARAMETERS':{'w':0, 'r':1, 'p':0, 'e':1, 'delta':0, 'beta':0, 'b':0, 'alpha':1},
'INITIAL CONDITIONS':{'s':'N', 'i':0, 'e':0},
'EPIDEMIOLOGICAL MODEL':{'modtype':'SIR'},
'EPIDEMIC EVENTS':{'vaccinate':[], 'seed':[], 'quarantine':[]}}
for i in sections.items():
try:
assert (self.cp.has_section(i[0]))
for v in i[1].items():
try:
self.cp.get(i[0], v[0])
except:
QtGui.QMessageBox.information(None,
self.trUtf8("Required variable missing"),
self.trUtf8("""Variable %s was missing. Variable created and value set to default"""%v))
self.cp.set(i[0], v[0],str(v[1]))
except AssertionError:
QtGui.QMessageBox.information(None,
self.trUtf8("Required section missing"),
self.trUtf8("""Section %s was missing. It was added to your file with default values for its variables."""%i[0]))
self.cp.add_section(i[0])
for j in i[1].items():
self.cp.set (i[0],j[0] , str(j[1]))
def fillTree(self, fname):
"""
Fills the tree from the configuration file's
contents.
Returns a ConfigParser object
"""
self.treeWidget.clear()
self.cp.read(fname)
self.checkScript()
self.updateViewer()
for sec in self.cp.sections():
topitem = QtGui.QTreeWidgetItem(self.treeWidget)
topitem.setText(0, sec)
topitem.setText(1, "---")
topitem.setText(2, "Section Header")
self.treeWidget.addTopLevelItem(topitem)
for opt in self.cp.options(sec):
chitem = QtGui.QTreeWidgetItem(topitem)
chitem.setText(0, opt)
pos = self.cp.get(sec,opt).find('#')
if pos >=0:
value = self.cp.get(sec,opt)[:pos]
comment = self.cp.get(sec,opt)[pos:]
else:
value = self.cp.get(sec,opt)
comment = "variable"
chitem.setText(1, value)
chitem.setText(2, comment)
def updateViewer(self):
vf = StringIO.StringIO()
self.cp.write(vf)
self.epgView.setPlainText(vf.getvalue())
vf.close()
@QtCore.pyqtSignature("")
def on_action_About_activated(self):
QtGui.QMessageBox.about(None,
self.trUtf8("About .EPG Editor"),
self.trUtf8("""This editor is for creating or modifying .epg files."""))
@QtCore.pyqtSignature("")
def on_actionAbout_Epigrass_activated(self):
aboutD = QtGui.QDialog()
ab = aboutDialog()
ab.setupUi(aboutD)
aboutD.show()
aboutD.exec_()
@QtCore.pyqtSignature("")
def on_action_Open_epg_File_activated(self):
# print "clicked"
fname = str(QtGui.QFileDialog.getOpenFileName(\
None,
self.trUtf8("Open .epg File"),
QtCore.QString(),
self.trUtf8("*.epg"),
None))
if fname:
self.fillTree(fname)
self.fname = fname
@QtCore.pyqtSignature("")
def on_action_New_activated(self):
fname = QtGui.QInputDialog.getText(\
None,
self.trUtf8("File Name"),
self.trUtf8("Enter a name for you new .epg file:"),
QtGui.QLineEdit.Normal)
print fname
if fname[1]:
fname = str(fname[0])
if not fname.endswith('.epg'):
fname+='.epg'
self.fillTree(fname)
@QtCore.pyqtSignature("")
def on_addVButton_clicked(self):
"""
Add a new variable to the current section
"""
item = QtGui.QInputDialog.getItem(\
None,
self.trUtf8("Choose Section"),
self.trUtf8("Select a section to which you want to add a variable:"),
self.fixed.keys(),
0, True)
if item[1]:
sec = str(item[0])
resp = QtGui.QInputDialog.getText(\
None,
self.trUtf8("Variable Name"),
self.trUtf8("Enter the name of the variable to be created"),
QtGui.QLineEdit.Normal)
if resp[1]:
nam = str(resp[0])
self.cp.set(sec, nam, '')
self.updateViewer()
# print sec, type(sec)
secit = self.treeWidget.findItems(sec, QtCore.Qt.MatchExactly, 0)[0]
child = QtGui.QTreeWidgetItem(secit)
child.setText(0, nam)
secit.addChild(child)
self.treeWidget.setCurrentItem(child)
self.treeWidget.scrollToItem(child)
self.on_treeWidget_itemDoubleClicked(child, 1)
# print sec, nam
@QtCore.pyqtSignature("")
def on_action_Help_activated(self):
self.tabWidget.setCurrentIndex(2)
@QtCore.pyqtSignature("")
def on_action_Exit_activated(self):
self.close()
@QtCore.pyqtSignature("")
def on_action_Save_activated(self):
if not self.fname:
self.fname = str(QtGui.QFileDialog.getSaveFileName(\
None,
self.trUtf8("Save File as"),
self.fname,
self.trUtf8("*.epg"),
None)
)
fo = open(self.fname, 'w')
self.cp.write(fo)
fo.close()
@QtCore.pyqtSignature("QTreeWidgetItem *, int")
def on_treeWidget_itemDoubleClicked(self, it, col):
# print it, col
if not it.parent():
return #cannot edit sections
else:
if col == 0 and (str(it.text(0)) in self.fixed[str(it.parent().text(0))]):
return#cannot edit required variables names
self.editing=(it, col)
self.treeWidget.openPersistentEditor(it, col)
@QtCore.pyqtSignature("")
def on_treeWidget_itemSelectionChanged(self):
if self.editing:
if str(self.editing[0].text(2)).startswith('#'): #Keep comments if they exist.
self.cp.set(str(self.editing[0].parent().text(0)),str(self.editing[0].text(0)) , str(self.editing[0].text(1))+'\t'+str(self.editing[0].text(2)))
else:
self.cp.set(str(self.editing[0].parent().text(0)),str(self.editing[0].text(0)) , str(self.editing[0].text(1)))
self.treeWidget.closePersistentEditor(*self.editing)
self.editing = None
self.on_action_Save_activated()
self.updateViewer()
def main():
import sys
app = QtGui.QApplication(sys.argv)
Form = Editor(sys.argv)
Form.show()
sys.exit(app.exec_())
if __name__ == "__main__":
main()
epigrass-2.4.7/Epigrass/epiRTplay.py 0000664 0000000 0000000 00000007415 12772733376 017371 0 ustar root root 0000000 0000000 #!/usr/bin/env python
#program to animate simulations in Real Time using Pyglet
import cPickle, glob, os, epigdal
from math import *
from pyglet import font
from pyglet import clock
from pyglet import window
from pyglet import image
from pyglet.gl import *
from pyglet.window import mouse
from pyglet.window import event
from pyglet.window import key
from numpy import *
from matplotlib import cm
from matplotlib.colors import rgb2hex
import primitives
import gdal,locale, ogr
class Viewer:
"""
Pyglet OpenGL cotext to display epidemic dynamics
"""
def __init__(self,graph, shpfname, geocfield, var="incidence"):
self .graph = graph
self.var = var
if graph:
self.nodes = dict([(n.geocode, n) for n in graph.site_list])
self.win = window.Window(visible=False)
self.win.set_caption('Model Dynamics')
self.polygons = self.drawMap(shpfname, geocfield)
self.colmap = cm.get_cmap("jet",100)
def Show(self, timestep):
"""
Shows the window and runs an update cycle.
"""
if not self.win.visible:
self.win.set_visible(True)
self.win.dispatch_events()
glClear(GL_COLOR_BUFFER_BIT | GL_DEPTH_BUFFER_BIT)
for pol in self.polygons.items():
color = self.colmap(self.nodes[pol[0]].__getattribute__(self.var)[timestep])
pol[1].color = color
pol[1].render()
self.win.flip()
def drawMap(self, fname, geocfield):
"""
Draws the polygons of the model
fname: shapefile with the polygons
"""
#Get the polygons
g = ogr.Open (fname)
L = g.GetLayer(0)
N = 0
pl = {}#polygon patch dictionary (by geocode)
feat = L.GetNextFeature()
while feat is not None:
try:
gc = feat.GetFieldAsInteger(geocfield)
except:
gc = 0
field_count = L.GetLayerDefn().GetFieldCount()
geo = feat.GetGeometryRef()
if geo.GetGeometryCount()<2:
g1 = geo.GetGeometryRef( 0 )
x =[g1.GetX(i) for i in xrange(g1.GetPointCount()) ]
y =[g1.GetY(i) for i in xrange(g1.GetPointCount()) ]
polv=zip(x, y) #Vertices do poligono
poligono = primitives.Polygon(polv) #Definimos o poligono
pl[gc]=poligono
for c in range( geo.GetGeometryCount()):
ring = geo.GetGeometryRef ( c )
for cnt in range( ring.GetGeometryCount()):
g1 = ring.GetGeometryRef( cnt )
x =[g1.GetX(i) for i in range(g1.GetPointCount()) ]
y =[g1.GetY(i) for i in range(g1.GetPointCount()) ]
polv=zip(x, y) #Vertices do poligono
poligono = primitives.Polygon(polv, color=(.3,0.2,0.5,.7)) #Definimos o poligono
pl[gc]=poligono
feat = L.GetNextFeature()
return pl
def animReplay(self,var):
"""
replays the animation for the given graph
- data: time series from database
- pos: column number of variable to animate
- ax: is the axis containing the polygons
- pl is the polygon dictionary
"""
for step in xrange(0, self.graph.maxstep):
self.show(step)
if __name__ == "__main__":
Display=Viewer(None,'riozonas_LatLong.shp', 'geocode' )
Display.win.set_visible(True)
while not Display.win.has_exit:
Display.win.dispatch_events()
glClear(GL_COLOR_BUFFER_BIT | GL_DEPTH_BUFFER_BIT)
[pol[1].render() for pol in Display.polygons.items()]
print "show"
Display.win.flip()
epigrass-2.4.7/Epigrass/epiRTplay.py.bak 0000664 0000000 0000000 00000007415 12720633740 020110 0 ustar root root 0000000 0000000 #!/usr/bin/env python
#program to animate simulations in Real Time using Pyglet
import cPickle, glob, os, epigdal
from math import *
from pyglet import font
from pyglet import clock
from pyglet import window
from pyglet import image
from pyglet.gl import *
from pyglet.window import mouse
from pyglet.window import event
from pyglet.window import key
from numpy import *
from matplotlib import cm
from matplotlib.colors import rgb2hex
import primitives
import gdal,locale, ogr
class Viewer:
"""
Pyglet OpenGL cotext to display epidemic dynamics
"""
def __init__(self,graph, shpfname, geocfield, var="incidence"):
self .graph = graph
self.var = var
if graph:
self.nodes = dict([(n.geocode, n) for n in graph.site_list])
self.win = window.Window(visible=False)
self.win.set_caption('Model Dynamics')
self.polygons = self.drawMap(shpfname, geocfield)
self.colmap = cm.get_cmap("jet",100)
def Show(self, timestep):
"""
Shows the window and runs an update cycle.
"""
if not self.win.visible:
self.win.set_visible(True)
self.win.dispatch_events()
glClear(GL_COLOR_BUFFER_BIT | GL_DEPTH_BUFFER_BIT)
for pol in self.polygons.items():
color = self.colmap(self.nodes[pol[0]].__getattribute__(self.var)[timestep])
pol[1].color = color
pol[1].render()
self.win.flip()
def drawMap(self, fname, geocfield):
"""
Draws the polygons of the model
fname: shapefile with the polygons
"""
#Get the polygons
g = ogr.Open (fname)
L = g.GetLayer(0)
N = 0
pl = {}#polygon patch dictionary (by geocode)
feat = L.GetNextFeature()
while feat is not None:
try:
gc = feat.GetFieldAsInteger(geocfield)
except:
gc = 0
field_count = L.GetLayerDefn().GetFieldCount()
geo = feat.GetGeometryRef()
if geo.GetGeometryCount()<2:
g1 = geo.GetGeometryRef( 0 )
x =[g1.GetX(i) for i in xrange(g1.GetPointCount()) ]
y =[g1.GetY(i) for i in xrange(g1.GetPointCount()) ]
polv=zip(x, y) #Vertices do poligono
poligono = primitives.Polygon(polv) #Definimos o poligono
pl[gc]=poligono
for c in range( geo.GetGeometryCount()):
ring = geo.GetGeometryRef ( c )
for cnt in range( ring.GetGeometryCount()):
g1 = ring.GetGeometryRef( cnt )
x =[g1.GetX(i) for i in range(g1.GetPointCount()) ]
y =[g1.GetY(i) for i in range(g1.GetPointCount()) ]
polv=zip(x, y) #Vertices do poligono
poligono = primitives.Polygon(polv, color=(.3,0.2,0.5,.7)) #Definimos o poligono
pl[gc]=poligono
feat = L.GetNextFeature()
return pl
def animReplay(self,var):
"""
replays the animation for the given graph
- data: time series from database
- pos: column number of variable to animate
- ax: is the axis containing the polygons
- pl is the polygon dictionary
"""
for step in xrange(0, self.graph.maxstep):
self.show(step)
if __name__ == "__main__":
Display=Viewer(None,'riozonas_LatLong.shp', 'geocode' )
Display.win.set_visible(True)
while not Display.win.has_exit:
Display.win.dispatch_events()
glClear(GL_COLOR_BUFFER_BIT | GL_DEPTH_BUFFER_BIT)
[pol[1].render() for pol in Display.polygons.items()]
print "show"
Display.win.flip()
epigrass-2.4.7/Epigrass/epigdal.py 0000664 0000000 0000000 00000063121 13006131351 017031 0 ustar root root 0000000 0000000 """
This module uses the GDAL and OGR Library to read maps in vaious formats and
export the results of Epigrass simulations to the formats supported by these libraries
copyright 2007,2012 by Flavio Codeco Coelho
Licensed under the GPL.
"""
import locale, os, pylab
from osgeo import ogr, osr, gdal
from xml.dom import minidom, Node
from matplotlib.colors import rgb2hex, LogNorm
from matplotlib.colors import Normalize
from matplotlib import cm
from numpy import array
from zipfile import ZipFile
import json
class World:
def __init__(self, filename, namefield, geocfield, outdir='.'):
'''
Instantiate a world object.
Filename points to a file supported by OGR
'''
self.geocfield = geocfield
self.namefield = namefield
self.outdir = outdir
try:
self.ds = ogr.Open(filename)
except AttributeError:
raise AttributeError("Could not open the Shapefile {}. Please check if the path is correct.".format(filename))
self.name = self.ds.GetName()
self.driver = self.ds.GetDriver()
layer = self.ds.GetLayer()
if layer.GetSpatialRef() is None:
self.in_spatial_ref = osr.SpatialReference()
self.in_spatial_ref.ImportFromEPSG(4326)
else:
epsg = layer.GetEPSG()
self.in_spatial_ref = osr.SpatialReference()
self.in_spatial_ref.ImportFromEPSG(epsg)
self.out_spatial_ref = osr.SpatialReference()
self.out_spatial_ref.ImportFromEPSG(4326)
self.coord_trans = osr.CoordinateTransformation(self.in_spatial_ref, self.out_spatial_ref)
self.centroids = [] # centroid list (x,y,z) tuples
self.centdict = {} # keys are geocode, values are (x,y,z) tuples
self.geomdict = {} # keys are geocode, values are geometries
self.namedict = {} # keys are geocode, values are locality names
self.nlist = [] # nodelist: feature objects
self.nodesource = False # True if Node datasource has been created
self.edgesource = False # True if Edge datasource has been created
self.datasource = False # True if Data datasource has been created
self.layerlist = self.get_layer_list()
def get_layer_list(self):
"""
returns a list with the
available layers by name
"""
nlay = self.ds.GetLayerCount()
ln = []
for i in xrange(nlay):
l = self.ds.GetLayer(i)
ln.append(l.GetName())
return ln
def draw_layer(self, L):
'''
Draws a polygon layer using pylab
'''
N = 0
L.ResetReading()
feat = L.GetNextFeature()
while feat is not None:
field_count = L.GetLayerDefn().GetFieldCount()
geo = feat.GetGeometryRef()
if geo.GetGeometryCount() < 2:
g1 = geo.GetGeometryRef(0)
x = [g1.GetX(i) for i in range(g1.GetPointCount())]
y = [g1.GetY(i) for i in range(g1.GetPointCount())]
pylab.plot(x, y, '-', hold=True)
for c in range(geo.GetGeometryCount()):
ring = geo.GetGeometryRef(c)
for cnt in range(ring.GetGeometryCount()):
g1 = ring.GetGeometryRef(cnt)
x = [g1.GetX(i) for i in range(g1.GetPointCount())]
y = [g1.GetY(i) for i in range(g1.GetPointCount())]
pylab.plot(x, y, '-', hold=True)
feat = L.GetNextFeature()
pylab.xlabel("Longitude")
pylab.ylabel("Latitude")
pylab.grid(True)
pylab.show()
def get_node_list(self, l):
'''
Updates self.centdict with centroid coordinates and self.nlist with layer features
l is an OGR layer.
'''
self.nlist = []
f = l.GetNextFeature()
while f is not None:
g = f.GetGeometryRef()
g.Transform(self.coord_trans) # Transforming to EPSG4326 coordinate system
self.geomdict[f.GetFieldAsInteger(self.geocfield)] = g
try:
c = g.Centroid()
self.nlist.append(f)
self.centdict[f.GetFieldAsInteger(self.geocfield)] = (c.GetX(), c.GetY(), c.GetZ())
self.namedict[f.GetFieldAsInteger(self.geocfield)] = f.GetField(self.namefield)
except: # in case feature is not a polygon
print f.GetFID(), g.GetGeometryType()
f = l.GetNextFeature()
# print (2600501 in self.centdict)
def create_node_layer(self):
"""
Creates a new shape file to represent network nodes.
The node layer will be based on the centroids of the
polygons belonging to the map layer associated with this
world instance.
namefield - name of the field containing polygon name
geocfield - name of the field containing geocode
"""
# Creates a new shape file to hold the data
if os.path.exists(os.path.join(self.outdir, 'Nodes.shp')):
os.remove(os.path.join(self.outdir, 'Nodes.shp'))
os.remove(os.path.join(self.outdir, 'Nodes.shx'))
os.remove(os.path.join(self.outdir, 'Nodes.dbf'))
if not self.nodesource:
dsn = self.driver.CreateDataSource(os.path.join(self.outdir, 'Nodes.shp'))
self.nodesource = dsn
nl = dsn.CreateLayer("nodes", geom_type=ogr.wkbPoint)
# Create the fields
fi1 = ogr.FieldDefn("name")
fi2 = ogr.FieldDefn("geocode", field_type=ogr.OFTInteger)
fi3 = ogr.FieldDefn("x", field_type=ogr.OFTString)
fi4 = ogr.FieldDefn("y", field_type=ogr.OFTString)
nl.CreateField(fi1)
nl.CreateField(fi2)
nl.CreateField(fi3)
nl.CreateField(fi4)
# Add the features (points)
for f in self.nlist:
gc = f.GetFieldAsInteger(self.geocfield)
x = self.centdict[gc][0]
y = self.centdict[gc][1]
fe = ogr.Feature(nl.GetLayerDefn())
name = f.GetField(self.namefield)
fe.SetField('name', f.GetField(self.namefield))
fe.SetField('geocode', gc)
fe.SetField('x', str(x))
fe.SetField('y', str(y))
pt = ogr.Geometry(type=ogr.wkbPoint)
pt.AddPoint(x, y)
fe.SetGeometryDirectly(pt)
nl.CreateFeature(fe)
nl.SyncToDisk()
self.out_spatial_ref.MorphToESRI()
with open('Nodes.prj', 'w') as fobj:
fobj.write(self.out_spatial_ref.ExportToWkt())
def create_edge_layer(self, elist):
"""
Creates a new layer with edge information.
elist is a list of tuples:
(sgeoc,dgeoc,fsd,fds)
"""
# Creates a new shape file to hold the data
if os.path.exists(os.path.join(self.outdir, 'Edges.shp')):
os.remove(os.path.join(self.outdir, 'Edges.shp'))
os.remove(os.path.join(self.outdir, 'Edges.shx'))
os.remove(os.path.join(self.outdir, 'Edges.dbf'))
if not self.edgesource:
dse = self.driver.CreateDataSource(os.path.join(self.outdir, 'Edges.shp'))
self.edgesource = dse
el = dse.CreateLayer("edges", geom_type=ogr.wkbLineString)
# Create the fields
fi1 = ogr.FieldDefn("s_geocode", field_type=ogr.OFTInteger)
fi2 = ogr.FieldDefn("d_geocode", field_type=ogr.OFTInteger)
fi3 = ogr.FieldDefn("flowSD", field_type=ogr.OFTReal)
fi3.SetPrecision(12)
fi4 = ogr.FieldDefn("flowDS", field_type=ogr.OFTReal)
fi4.SetPrecision(12)
el.CreateField(fi1)
el.CreateField(fi2)
el.CreateField(fi3)
el.CreateField(fi4)
# Add the features (lines)
for e in elist:
# print "setting edge fields"
fe = ogr.Feature(el.GetLayerDefn())
fe.SetField('s_geocode', e[0])
fe.SetField('d_geocode', e[1])
fe.SetField('flowSD', float(e[2]))
fe.SetField('flowSD', float(e[3]))
line = ogr.Geometry(type=ogr.wkbLineString)
try:
# print "creating edge lines"
line.AddPoint(self.centdict[int(e[0])][0], self.centdict[int(e[0])][1])
line.AddPoint(self.centdict[int(e[1])][0], self.centdict[int(e[1])][1])
fe.SetGeometryDirectly(line)
el.CreateFeature(fe)
except: # node not in centdict
pass
el.SyncToDisk()
self.out_spatial_ref.MorphToESRI()
with open('Edges.prj', 'w') as fobj:
fobj.write(self.out_spatial_ref.ExportToWkt())
def create_data_layer(self, varlist, data):
"""
Creates a new shape to contain data about nodes.
varlist is the list of fields names associated with
the nodes.
data is a list of lists whose first element is the geocode
and the remaining elements are values of the fields, in the
same order as they appear in varlist.
"""
data = array(data)
# building normalizers for each variable, except geocode
norms = [Normalize(c.min(), c.max()) for c in data[:, 1:].T]
if os.path.exists(os.path.join(self.outdir, 'Data.shp')):
os.remove(os.path.join(self.outdir, 'Data.shp'))
os.remove(os.path.join(self.outdir, 'Data.shx'))
os.remove(os.path.join(self.outdir, 'Data.dbf'))
# Creates a new shape file to hold the data
if not self.datasource:
dsd = self.driver.CreateDataSource(os.path.join(self.outdir, 'Data.shp'))
self.datasource = dsd
dl = dsd.CreateLayer("sim_results", geom_type=ogr.wkbPolygon)
# Create the fields
fi1 = ogr.FieldDefn("geocode", field_type=ogr.OFTInteger)
fin = ogr.FieldDefn("name", field_type=ogr.OFTString)
fic = ogr.FieldDefn("colors", field_type=ogr.OFTString)
dl.CreateField(fi1)
dl.CreateField(fin)
dl.CreateField(fic) # json array with colors
for v in varlist:
# print "creating data fields"
fi = ogr.FieldDefn(v, field_type=ogr.OFTReal)
fi.SetPrecision(12)
dl.CreateField(fi)
# Add the features (points)
for l in data:
# print l
# Iterate over the lines of the data matrix.
hexcolors = [self.get_hex_color(norms[i](v)) for i, v in enumerate(l[1:])]
gc = int(l[0])
try:
geom = self.geomdict[gc]
except KeyError: # Geocode not in polygon dictionary
raise KeyError("Geocode %s not in polygon dictionary\n{}" % gc)
if geom.GetGeometryType() != 3: continue
# print geom.GetGeometryCount()
fe = ogr.Feature(dl.GetLayerDefn())
fe.SetField('geocode', gc)
fe.SetField('name', self.namedict[gc])
fe.SetField('colors', str(hexcolors))
for v, d in zip(varlist, l[1:]):
# print v,d
fe.SetField(v, float(d))
# Add the geometry
# print "cloning geometry"
clone = geom.Clone()
# print geom
# print "setting geometry"
fe.SetGeometry(clone)
# print "creating geom"
dl.CreateFeature(fe)
dl.SyncToDisk()
self.out_spatial_ref.MorphToESRI()
with open('Data.prj', 'w') as fobj:
fobj.write(self.out_spatial_ref.ExportToWkt())
self.save_data_geojson(dl)
def get_hex_color(self, value):
cols = cm.get_cmap("YlOrRd", 256)
rgba = cols(value * 256)
bgrcol = list(rgba[:-1]) # rgb(list)
bgrcol.reverse() # turn it into bgr
hexcol = "#80" + rgb2hex(bgrcol)[1:] # abgr Alpha set to 128
return hexcol
def save_data_geojson(self, dl, namefield=None):
"""
Creates a GeoJSON file containin the polygon layer and results of the simulation
:Parameters:
:parameter dl: datalayer to save
"""
print "==> saving to GeoJSON"
spatial_reference = dl.GetSpatialRef()
feature_collection = {"type": "FeatureCollection",
"features": []
}
# if spatial_reference is not None:
# with open("data.crs", "wb") as f:
# f.write(spatial_reference.ExportToProj4())
#
# feature_collection["crs"] = {"type": "link",
# "properties": {
# "href": "data.crs",
# "type": "proj4"
# }
# }
if namefield is None:
namefield = self.namefield
dl.ResetReading()
fe = dl.GetNextFeature()
# print fe
while fe is not None:
# print namefield
fi = fe.GetField(namefield)
# print fi,type(fi)
try:
fi = fi.decode('utf8', 'ignore')
except AttributeError:
fi = '' # name is None
fe.SetField(namefield, str(fi))
feature = json.loads(fe.ExportToJson())
feature['properties']['colors'] = eval(feature['properties']['colors'])
feature_collection["features"].append(feature)
fe = dl.GetNextFeature()
with open(os.path.join(self.outdir, 'data.json'), 'w') as f:
json.dump(feature_collection, f)
def gen_sites_file(self, fname):
"""
This method generate a sites
csv file from the nodes extracted from the
map.
"""
with open(fname, "w") as f:
for fe in self.nlist:
gc = fe.GetFieldAsInteger(self.geocfield)
x = self.centdict[gc][0]
y = self.centdict[gc][1]
name = fe.GetField(self.namefield)
line = "%s,%s,%s,%s\n" % (x, y, name, gc)
# fe.SetField('name',f.GetField(self.namefield))
f.write(line)
def close_sources(self):
"""
Close the data sources so that data is flushed and and files are closed
"""
if self.nodesource:
self.nodesource.Destroy()
if self.edgesource:
self.edgesource.Destroy()
if self.datasource:
self.datasource.Destroy()
class AnimatedKML(object):
"""
Creates animated KML based on layer given
"""
def __init__(self, kmlfile, extrude=1):
"""
kmlfile: File containing the layer over which the animation will be built. it must contain polygons. Placemarks should contain a tag geocode
extrude: if True the polygons will be extruded according to values in the timeseries data.
"""
self.extrude = extrude
self.fname = kmlfile
self.kmlDoc = minidom.parse(kmlfile)
self.doc = self.kmlDoc.getElementsByTagName("Document")[0]
ufElems = self.kmlDoc.getElementsByTagName("Placemark")
self.pmdict = {}
for e in ufElems:
nel = e.getElementsByTagName("name")[0]
name = self._get_text(nel.childNodes).split('-')[0]
self.pmdict[name] = e
def _get_text(self, nodelist):
"""
Returns the text of a xml text node
"""
rc = []
for node in nodelist:
if node.nodeType == node.TEXT_NODE:
rc.append(node.data)
return ''.join(rc)
def add_data(self, data):
"""
Add time-series data for the localities: [(geocode,time,value),...]
"""
vals = array([i[2] for i in data])
norm = Normalize(vals.min(), vals.max())
for i, d in enumerate(data):
# print i, " of ", len(data)
pm = self.pmdict[d[0]]
# clone placemark to receive new data
pm_newtime = pm.cloneNode(1)
# Renaming placemark
on = pm_newtime.getElementsByTagName('name')[0]
nn = self.kmlDoc.createElement('name')
nn.appendChild(self.kmlDoc.createTextNode(d[0] + '-' + str(d[1])))
pm_newtime.replaceChild(nn, on)
nl = pm_newtime.childNodes
# extrude polygon
pol = pm_newtime.getElementsByTagName('Polygon')[0]
alt = self.kmlDoc.createElement('altitudeMode')
alt.appendChild(self.kmlDoc.createTextNode('relativeToGround'))
ex = self.kmlDoc.createElement('extrude')
ex.appendChild(self.kmlDoc.createTextNode('1'))
ts = self.kmlDoc.createElement('tessellate')
ts.appendChild(self.kmlDoc.createTextNode('1'))
pol.appendChild(alt)
pol.appendChild(ex)
pol.appendChild(ts)
lr = pm_newtime.getElementsByTagName('LinearRing')[0]
nlr = self.extrude_polygon(lr, d[2])
ob = pm_newtime.getElementsByTagName('outerBoundaryIs')[0]
# ob.replaceChild(nlr, lr)
ob.removeChild(lr)
ob.appendChild(nlr)
# set polygon style
col = rgb2hex(cm.jet(norm(d[2]))[:3]) + 'ff'
st = pm_newtime.getElementsByTagName('Style')[0] # style
nst = self.set_polygon_style(st, col)
pm_newtime.removeChild(st)
pm_newtime.appendChild(nst)
# add timestamp
ts = self.kmlDoc.createElement('TimeStamp')
w = self.kmlDoc.createElement('when')
w.appendChild(self.kmlDoc.createTextNode(str(d[1])))
ts.appendChild(w)
pm_newtime.appendChild(ts)
self.doc.appendChild(pm_newtime)
for pm in self.pmdict.itervalues():
self.doc.removeChild(pm)
self.pmdict = {}
def extrude_polygon(self, lr, alt):
"""
Adds altitude to the coordinates of the linear ring.
"""
c = lr.getElementsByTagName('coordinates')[0]
nc = self.kmlDoc.createElement('coordinates')
ctext = self._get_text(c.childNodes)
nctext = ' '.join([p + ',' + str(alt * 100) for p in ctext.split(' ')])
nc.appendChild(self.kmlDoc.createTextNode(nctext))
alt = self.kmlDoc.createElement('altitudeMode')
alt.appendChild(self.kmlDoc.createTextNode('relativeToGround'))
# altoff = self.kmlDoc.createElement('altitudeOffset')
# altoff.appendChild(self.kmlDoc.createTextNode(str(d[2]*1000)))
ex = self.kmlDoc.createElement('extrude')
ex.appendChild(self.kmlDoc.createTextNode('1'))
ts = self.kmlDoc.createElement('tessellate')
ts.appendChild(self.kmlDoc.createTextNode('1'))
lr.replaceChild(nc, c)
lr.appendChild(alt)
if self.extrude:
lr.appendChild(ex)
lr.appendChild(ts)
# lr.appendChild(altoff)
return lr
def set_polygon_style(self, style, color):
st = style
pst = st.getElementsByTagName('PolyStyle')[0] # polygon style
pst1 = self.kmlDoc.createElement('PolyStyle')
pfill = self.kmlDoc.createElement('fill')
pcol = self.kmlDoc.createElement('color')
pfill.appendChild(self.kmlDoc.createTextNode('1'))
pcol.appendChild(self.kmlDoc.createTextNode(color))
pst1.appendChild(pfill)
pst1.appendChild(pcol)
st.replaceChild(pst1, pst)
return st
def save(self, fname=''):
"""
saves the new document
"""
dir = os.path.split(self.fname)[0]
if not fname:
fname = self.fname.split('.')[0] + '_animation'
else:
fname = os.path.join(dir, fname)
# ld = zlib.compress(self.kmlDoc.toxml('utf-8'))
with open(fname + '.kml', 'w') as f:
f.write(self.kmlDoc.toprettyxml(indent=' ', encoding='utf-8'))
# Now zip the kml to generate the kmz
with ZipFile(fname + '.kmz', 'w', allowZip64=True) as kmz:
kmz.write(fname + '.kml')
os.unlink(fname + '.kml')
class KmlGenerator:
"""
Generate a KML file for displaying data on
Google Maps/Earth
"""
def __init__(self):
self.doc = None
self.dnode = None # document node in the DOM
self.genRoot()
def genRoot(self):
"""
Generate a KML file root.
"""
self.kmldoc = doc = minidom.Document()
kml = doc.createElement("kml")
kml.setAttribute("xmlns", "http://earth.google.com/kml/2.1")
doc.appendChild(kml)
d = doc.createElement("Document")
kml.appendChild(d)
nel = doc.createElement("name")
name = doc.createTextNode("KML Epigrass data file")
nel.appendChild(name)
d.appendChild(nel)
desc = doc.createElement("description")
d.appendChild(desc)
desc.appendChild(doc.createTextNode("Polygons with data"))
self.dnode = d
def get_hex_color(self, value):
jet = cm.get_cmap("jet", 50)
rgba = jet(value * 50)
bgrcol = list(rgba[:-1]) # rgb(list)
bgrcol.reverse() # turn it into bgr
hexcol = "#80" + rgb2hex(bgrcol)[1:] # abgr Alpha set to 128
return hexcol
def addNodes(self, layer, names=None):
"""
Adds a node to the document.
d is the document element KML dom object.
layer is a data layer with polygons and the results of a simulation as features
names is a dictionary of names indexed by geocode(int)
"""
doc = self.dnode
layer.ResetReading()
while 1:
f = layer.GetNextFeature()
if not f: # exit after the last feature
break
prevalence = float(f.GetField("prevalence"))
hexcol = self.get_hex_color(prevalence)
g = f.GetGeometryRef()
if g.GetGeometryType() == 3:
geoc = f.GetFieldAsInteger("geocode")
if not names:
name = ""
else:
try:
name = str(geoc) + "-" + names[geoc]
except KeyError:
print geoc
name = ""
description = "Prevalence: %s;\nTotal cases: %s;\nImported Cases: %s;" % (
prevalence, f.GetField("totalcases"), f.GetField("arrivals"))
locale.setlocale(locale.LC_ALL, "C") # avoids conversion of decimal points
gml = g.ExportToGML() # extract the coordinates from the GML representation
coords = gml.split('')[1].split(' ')[0]
coords = " ".join([i + ",0" for i in coords.split(" ")]) # add z coordinate
# create the kml elements
# placemark and sub elements
pm = self.kmldoc.createElement("Placemark")
nm = self.kmldoc.createElement("name")
nm.appendChild(self.kmldoc.createTextNode(name))
desc = self.kmldoc.createElement("description")
desc.appendChild(self.kmldoc.createTextNode(description))
pm.appendChild(nm)
pm.appendChild(desc)
# style and subelements
st = self.kmldoc.createElement("Style")
pm.appendChild(st)
ps = self.kmldoc.createElement("PolyStyle")
color = self.kmldoc.createElement("color")
color.appendChild(self.kmldoc.createTextNode(hexcol))
ps.appendChild(color)
fill = self.kmldoc.createElement("fill")
fill.appendChild(self.kmldoc.createTextNode("1"))
ps.appendChild(fill)
outline = self.kmldoc.createElement("outline")
outline.appendChild(self.kmldoc.createTextNode("1"))
ps.appendChild(outline)
st.appendChild(ps)
doc.appendChild(pm)
# Multigeometry
mg = self.kmldoc.createElement("MultiGeometry")
pm.appendChild(mg)
polygon = self.kmldoc.createElement("Polygon")
mg.appendChild(polygon)
ob = self.kmldoc.createElement("outerBoundaryIs")
polygon.appendChild(ob)
linr = self.kmldoc.createElement("LinearRing")
ob.appendChild(linr)
coordin = self.kmldoc.createElement("coordinates")
linr.appendChild(coordin)
coordin.appendChild(self.kmldoc.createTextNode(coords))
def writeToFile(self, dir):
"""
Writes the kml file to disk
"""
fullpath = os.path.join(dir, "Data.kml")
f = open(fullpath, "w")
f.write(self.kmldoc.toxml())
f.close()
def gdal_error_handler(err_class, err_num, err_msg):
errtype = {
gdal.CE_None: 'None',
gdal.CE_Debug: 'Debug',
gdal.CE_Warning: 'Warning',
gdal.CE_Failure: 'Failure',
gdal.CE_Fatal: 'Fatal'
}
err_msg = err_msg.replace('\n', ' ')
err_class = errtype.get(err_class, 'None')
print 'Error Number: %s' % (err_num)
print 'Error Type: %s' % (err_class)
print 'Error Message: %s' % (err_msg)
# install error handler
gdal.PushErrorHandler(gdal_error_handler)
if __name__ == "__main__":
# opening data source
w = World('riozonas_LatLong.shp', 'nome_zonas', 'zona_trafe')
layer = w.ds.GetLayerByName(w.layerlist[0])
w.get_node_list(layer)
w.draw_layer(layer)
w.save_data_geojson(layer)
w.create_node_layer()
w.nodesource.Destroy() # flush data to disk
## k = KmlGenerator()
## k.addNodes(w.datasource.GetLayer(0))
## k.writeToFile()
epigrass-2.4.7/Epigrass/epigdal.py.bak 0000664 0000000 0000000 00000057706 12772727035 017624 0 ustar root root 0000000 0000000 """
This module uses the GDAL and OGR Library to read maps in vaious formats and
export the results of Epigrass simulations to the formats supported by these libraries
copyright 2007,2012 by Flavio Codeco Coelho
Licensed under the GPL.
"""
import locale, os, pylab
from osgeo import ogr
from xml.dom import minidom, Node
from matplotlib.colors import rgb2hex, LogNorm
from matplotlib.colors import Normalize
from matplotlib import cm
from numpy import array
from zipfile import ZipFile
import json
class World:
def __init__(self, filename, namefield, geocfield, outdir='.'):
'''
Instantiate a world object.
Filename points to a file supported by OGR
'''
self.geocfield = geocfield
self.namefield = namefield
self.outdir = outdir
try:
self.ds = ogr.Open(filename)
except AttributeError as e:
raise AttributeError("Could not open the Shapefile {}. Please check if the path is correct.")
self.name = self.ds.GetName()
self.driver = self.ds.GetDriver()
self.centroids = []#centroid list (x,y,z) tuples
self.centdict = {} #keys are geocode, values are (x,y,z) tuples
self.geomdict = {} #keys are geocode, values are geometries
self.namedict = {} #keys are geocode, values are locality names
self.nlist = [] #nodelist: feature objects
self.nodesource = False #True if Node datasource has been created
self.edgesource = False #True if Edge datasource has been created
self.datasource = False #True if Data datasource has been created
self.layerlist = self.get_layer_list()
def get_layer_list(self):
"""
returns a list with the
available layers by name
"""
nlay = self.ds.GetLayerCount()
ln = []
for i in range(nlay):
l = self.ds.GetLayer(i)
ln.append(l.GetName())
return ln
def draw_layer(self, L):
'''
Draws a polygon layer using pylab
'''
N = 0
L.ResetReading()
feat = L.GetNextFeature()
while feat is not None:
field_count = L.GetLayerDefn().GetFieldCount()
geo = feat.GetGeometryRef()
if geo.GetGeometryCount() < 2:
g1 = geo.GetGeometryRef(0)
x = [g1.GetX(i) for i in range(g1.GetPointCount())]
y = [g1.GetY(i) for i in range(g1.GetPointCount())]
pylab.plot(x, y, '-', hold=True)
for c in range(geo.GetGeometryCount()):
ring = geo.GetGeometryRef(c)
for cnt in range(ring.GetGeometryCount()):
g1 = ring.GetGeometryRef(cnt)
x = [g1.GetX(i) for i in range(g1.GetPointCount())]
y = [g1.GetY(i) for i in range(g1.GetPointCount())]
pylab.plot(x, y, '-', hold=True)
feat = L.GetNextFeature()
pylab.xlabel("Longitude")
pylab.ylabel("Latitude")
pylab.grid(True)
pylab.show()
def get_node_list(self, l):
'''
Updates self.centdict with centroid coordinates and self.nlist with layer features
l is an OGR layer.
'''
self.nlist = []
f = l.GetNextFeature()
while f is not None:
g = f.GetGeometryRef()
self.geomdict[f.GetFieldAsInteger(self.geocfield)] = g
try:
c = g.Centroid()
self.nlist.append(f)
self.centdict[f.GetFieldAsInteger(self.geocfield)] = (c.GetX(), c.GetY(), c.GetZ())
self.namedict[f.GetFieldAsInteger(self.geocfield)] = f.GetField(self.namefield)
except: #in case feature is not a polygon
print f.GetFID(), g.GetGeometryType()
f = l.GetNextFeature()
#print (2600501 in self.centdict)
def create_node_layer(self):
"""
Creates a new shape file to represent network nodes.
The node layer will be based on the centroids of the
polygons belonging to the map layer associated with this
world instance.
namefield - name of the field containing polygon name
geocfield - name of the field containing geocode
"""
# Creates a new shape file to hold the data
if os.path.exists(os.path.join(self.outdir, 'Nodes.shp')):
os.remove(os.path.join(self.outdir, 'Nodes.shp'))
os.remove(os.path.join(self.outdir, 'Nodes.shx'))
os.remove(os.path.join(self.outdir, 'Nodes.dbf'))
if not self.nodesource:
dsn = self.driver.CreateDataSource(os.path.join(self.outdir, 'Nodes.shp'))
self.nodesource = dsn
nl = dsn.CreateLayer("nodes", geom_type=ogr.wkbPoint)
#Create the fields
fi1 = ogr.FieldDefn("name")
fi2 = ogr.FieldDefn("geocode", field_type=ogr.OFTInteger)
fi3 = ogr.FieldDefn("x", field_type=ogr.OFTString)
fi4 = ogr.FieldDefn("y", field_type=ogr.OFTString)
nl.CreateField(fi1)
nl.CreateField(fi2)
nl.CreateField(fi3)
nl.CreateField(fi4)
#Add the features (points)
for f in self.nlist:
gc = f.GetFieldAsInteger(self.geocfield)
x = self.centdict[gc][0]
y = self.centdict[gc][1]
fe = ogr.Feature(nl.GetLayerDefn())
name = f.GetField(self.namefield)
fe.SetField('name', f.GetField(self.namefield))
fe.SetField('geocode', gc)
fe.SetField('x', str(x))
fe.SetField('y', str(y))
pt = ogr.Geometry(type=ogr.wkbPoint)
pt.AddPoint(x, y)
fe.SetGeometryDirectly(pt)
nl.CreateFeature(fe)
nl.SyncToDisk()
def create_edge_layer(self, elist):
"""
Creates a new layer with edge information.
elist is a list of tuples:
(sgeoc,dgeoc,fsd,fds)
"""
# Creates a new shape file to hold the data
if os.path.exists(os.path.join(self.outdir, 'Edges.shp')):
os.remove(os.path.join(self.outdir, 'Edges.shp'))
os.remove(os.path.join(self.outdir, 'Edges.shx'))
os.remove(os.path.join(self.outdir, 'Edges.dbf'))
if not self.edgesource:
dse = self.driver.CreateDataSource(os.path.join(self.outdir, 'Edges.shp'))
self.edgesource = dse
el = dse.CreateLayer("edges", geom_type=ogr.wkbLineString)
#Create the fields
fi1 = ogr.FieldDefn("s_geocode", field_type=ogr.OFTInteger)
fi2 = ogr.FieldDefn("d_geocode", field_type=ogr.OFTInteger)
fi3 = ogr.FieldDefn("flowSD", field_type=ogr.OFTReal)
fi3.SetPrecision(12)
fi4 = ogr.FieldDefn("flowDS", field_type=ogr.OFTReal)
fi4.SetPrecision(12)
el.CreateField(fi1)
el.CreateField(fi2)
el.CreateField(fi3)
el.CreateField(fi4)
#Add the features (lines)
for e in elist:
#print "setting edge fields"
fe = ogr.Feature(el.GetLayerDefn())
fe.SetField('s_geocode', e[0])
fe.SetField('d_geocode', e[1])
fe.SetField('flowSD', float(e[2]))
fe.SetField('flowSD', float(e[3]))
line = ogr.Geometry(type=ogr.wkbLineString)
try:
#print "creating edge lines"
line.AddPoint(self.centdict[int(e[0])][0], self.centdict[int(e[0])][1])
line.AddPoint(self.centdict[int(e[1])][0], self.centdict[int(e[1])][1])
fe.SetGeometryDirectly(line)
el.CreateFeature(fe)
except: #node not in centdict
pass
el.SyncToDisk()
def create_data_layer(self, varlist, data):
"""
Creates a new shape to contain data about nodes.
varlist is the list of fields names associated with
the nodes.
data is a list of lists whose first element is the geocode
and the remaining elements are values of the fields, in the
same order as they appear in varlist.
"""
data = array(data)
# building normalizers for each variable, except geocode
norms = [Normalize(c.min(), c.max()) for c in data[:, 1:].T]
if os.path.exists(os.path.join(self.outdir, 'Data.shp')):
os.remove(os.path.join(self.outdir, 'Data.shp'))
os.remove(os.path.join(self.outdir, 'Data.shx'))
os.remove(os.path.join(self.outdir, 'Data.dbf'))
# Creates a new shape file to hold the data
if not self.datasource:
dsd = self.driver.CreateDataSource(os.path.join(self.outdir, 'Data.shp'))
self.datasource = dsd
dl = dsd.CreateLayer("sim_results", geom_type=ogr.wkbPolygon)
#Create the fields
fi1 = ogr.FieldDefn("geocode", field_type=ogr.OFTInteger)
fin = ogr.FieldDefn("name", field_type=ogr.OFTString)
fic = ogr.FieldDefn("colors", field_type=ogr.OFTString)
dl.CreateField(fi1)
dl.CreateField(fin)
dl.CreateField(fic) #json array with colors
for v in varlist:
#print "creating data fields"
fi = ogr.FieldDefn(v, field_type=ogr.OFTReal)
fi.SetPrecision(12)
dl.CreateField(fi)
#Add the features (points)
for l in data:
# print l
#Iterate over the lines of the data matrix.
hexcolors = [self.get_hex_color(norms[i](v)) for i, v in enumerate(l[1:])]
gc = l[0]
try:
geom = self.geomdict[gc]
except KeyError: #Geocode not in polygon dictionary
raise KeyError("Geocode %s not in polygon dictionary" % gc)
if geom.GetGeometryType() != 3: continue
#print geom.GetGeometryCount()
fe = ogr.Feature(dl.GetLayerDefn())
fe.SetField('geocode', gc)
fe.SetField('name', self.namedict[gc])
fe.SetField('colors', str(hexcolors))
for v, d in zip(varlist, l[1:]):
#print v,d
fe.SetField(v, float(d))
#Add the geometry
#print "cloning geometry"
clone = geom.Clone()
#print geom
#print "setting geometry"
fe.SetGeometry(clone)
#print "creating geom"
dl.CreateFeature(fe)
dl.SyncToDisk()
self.save_data_geojson(dl)
def get_hex_color(self, value):
cols = cm.get_cmap("YlOrRd", 256)
rgba = cols(value * 256)
bgrcol = list(rgba[:-1]) #rgb(list)
bgrcol.reverse() #turn it into bgr
hexcol = "#80" + rgb2hex(bgrcol)[1:] #abgr Alpha set to 128
return hexcol
def save_data_geojson(self, dl, namefield=None):
"""
Creates a GeoJSON file containin the polygon layer and results of the simulation
:Parameters:
:parameter dl: datalayer to save
"""
print "==> saving to GeoJSON"
spatial_reference = dl.GetSpatialRef()
feature_collection = {"type": "FeatureCollection",
"features": []
}
# if spatial_reference is not None:
# with open("data.crs", "wb") as f:
# f.write(spatial_reference.ExportToProj4())
#
# feature_collection["crs"] = {"type": "link",
# "properties": {
# "href": "data.crs",
# "type": "proj4"
# }
# }
if namefield is None:
namefield = self.namefield
dl.ResetReading()
fe = dl.GetNextFeature()
# print fe
while fe is not None:
# print namefield
fi = fe.GetField('name')
# print fi,type(fi)
try:
fi = fi.decode('utf8', 'ignore')
except AttributeError:
fi = '' #name is None
fe.SetField('name', str(fi))
feature = json.loads(fe.ExportToJson())
feature['properties']['colors'] = eval(feature['properties']['colors'])
feature_collection["features"].append(feature)
fe = dl.GetNextFeature()
with open(os.path.join(self.outdir, 'data.json'), 'w') as f:
json.dump(feature_collection, f)
def gen_sites_file(self, fname):
"""
This method generate a sites
csv file from the nodes extracted from the
map.
"""
with open(fname, "w") as f:
for fe in self.nlist:
gc = fe.GetFieldAsInteger(self.geocfield)
x = self.centdict[gc][0]
y = self.centdict[gc][1]
name = fe.GetField(self.namefield)
line = "%s,%s,%s,%s\n" % (x, y, name, gc)
#fe.SetField('name',f.GetField(self.namefield))
f.write(line)
def close_sources(self):
"""
Close the data sources so that data is flushed and and files are closed
"""
if self.nodesource:
self.nodesource.Destroy()
#print "closed node files"
if self.edgesource:
self.edgesource.Destroy()
#print "closed edge files"
if self.datasource:
self.datasource.Destroy()
#print "closed data files"
class AnimatedKML(object):
"""
Creates animated KML based on layer given
"""
def __init__(self, kmlfile, extrude=1):
"""
kmlfile: File containing the layer over which the animation will be built. it must contain polygons. Placemarks should contain a tag geocode
extrude: if True the polygons will be extruded according to values in the timeseries data.
"""
self.extrude = extrude
self.fname = kmlfile
self.kmlDoc = minidom.parse(kmlfile)
self.doc = self.kmlDoc.getElementsByTagName("Document")[0]
ufElems = self.kmlDoc.getElementsByTagName("Placemark")
self.pmdict = {}
for e in ufElems:
nel = e.getElementsByTagName("name")[0]
name = self._get_text(nel.childNodes).split('-')[0]
self.pmdict[name] = e
def _get_text(self, nodelist):
"""
Returns the text of a xml text node
"""
rc = []
for node in nodelist:
if node.nodeType == node.TEXT_NODE:
rc.append(node.data)
return ''.join(rc)
def add_data(self, data):
"""
Add time-series data for the localities: [(geocode,time,value),...]
"""
vals = array([i[2] for i in data])
norm = Normalize(vals.min(), vals.max())
for i, d in enumerate(data):
# print i, " of ", len(data)
pm = self.pmdict[d[0]]
#clone placemark to receive new data
pm_newtime = pm.cloneNode(1)
# Renaming placemark
on = pm_newtime.getElementsByTagName('name')[0]
nn = self.kmlDoc.createElement('name')
nn.appendChild(self.kmlDoc.createTextNode(d[0] + '-' + str(d[1])))
pm_newtime.replaceChild(nn, on)
nl = pm_newtime.childNodes
#extrude polygon
pol = pm_newtime.getElementsByTagName('Polygon')[0]
alt = self.kmlDoc.createElement('altitudeMode')
alt.appendChild(self.kmlDoc.createTextNode('relativeToGround'))
ex = self.kmlDoc.createElement('extrude')
ex.appendChild(self.kmlDoc.createTextNode('1'))
ts = self.kmlDoc.createElement('tessellate')
ts.appendChild(self.kmlDoc.createTextNode('1'))
pol.appendChild(alt)
pol.appendChild(ex)
pol.appendChild(ts)
lr = pm_newtime.getElementsByTagName('LinearRing')[0]
nlr = self.extrude_polygon(lr, d[2])
ob = pm_newtime.getElementsByTagName('outerBoundaryIs')[0]
# ob.replaceChild(nlr, lr)
ob.removeChild(lr)
ob.appendChild(nlr)
#set polygon style
col = rgb2hex(cm.jet(norm(d[2]))[:3]) + 'ff'
st = pm_newtime.getElementsByTagName('Style')[0] #style
nst = self.set_polygon_style(st, col)
pm_newtime.removeChild(st)
pm_newtime.appendChild(nst)
#add timestamp
ts = self.kmlDoc.createElement('TimeStamp')
w = self.kmlDoc.createElement('when')
w.appendChild(self.kmlDoc.createTextNode(str(d[1])))
ts.appendChild(w)
pm_newtime.appendChild(ts)
self.doc.appendChild(pm_newtime)
for pm in self.pmdict.itervalues():
self.doc.removeChild(pm)
self.pmdict = {}
def extrude_polygon(self, lr, alt):
"""
Adds altitude to the coordinates of the linear ring.
"""
c = lr.getElementsByTagName('coordinates')[0]
nc = self.kmlDoc.createElement('coordinates')
ctext = self._get_text(c.childNodes)
nctext = ' '.join([p + ',' + str(alt * 100) for p in ctext.split(' ')])
nc.appendChild(self.kmlDoc.createTextNode(nctext))
alt = self.kmlDoc.createElement('altitudeMode')
alt.appendChild(self.kmlDoc.createTextNode('relativeToGround'))
# altoff = self.kmlDoc.createElement('altitudeOffset')
# altoff.appendChild(self.kmlDoc.createTextNode(str(d[2]*1000)))
ex = self.kmlDoc.createElement('extrude')
ex.appendChild(self.kmlDoc.createTextNode('1'))
ts = self.kmlDoc.createElement('tessellate')
ts.appendChild(self.kmlDoc.createTextNode('1'))
lr.replaceChild(nc, c)
lr.appendChild(alt)
if self.extrude:
lr.appendChild(ex)
lr.appendChild(ts)
# lr.appendChild(altoff)
return lr
def set_polygon_style(self, style, color):
st = style
pst = st.getElementsByTagName('PolyStyle')[0] #polygon style
pst1 = self.kmlDoc.createElement('PolyStyle')
pfill = self.kmlDoc.createElement('fill')
pcol = self.kmlDoc.createElement('color')
pfill.appendChild(self.kmlDoc.createTextNode('1'))
pcol.appendChild(self.kmlDoc.createTextNode(color))
pst1.appendChild(pfill)
pst1.appendChild(pcol)
st.replaceChild(pst1, pst)
return st
def save(self, fname=''):
"""
saves the new document
"""
dir = os.path.split(self.fname)[0]
if not fname:
fname = self.fname.split('.')[0] + '_animation'
else:
fname = os.path.join(dir, fname)
# ld = zlib.compress(self.kmlDoc.toxml('utf-8'))
with open(fname + '.kml', 'w') as f:
f.write(self.kmlDoc.toprettyxml(indent=' ', encoding='utf-8'))
# Now zip the kml to generate the kmz
with ZipFile(fname + '.kmz', 'w', allowZip64=True) as kmz:
kmz.write(fname + '.kml')
os.unlink(fname + '.kml')
class KmlGenerator:
"""
Generate a KML file for displaying data on
Google Maps/Earth
"""
def __init__(self):
self.doc = None
self.dnode = None #document node in the DOM
self.genRoot()
def genRoot(self):
"""
Generate a KML file root.
"""
self.kmldoc = doc = minidom.Document()
kml = doc.createElement("kml")
kml.setAttribute("xmlns", "http://earth.google.com/kml/2.1")
doc.appendChild(kml)
d = doc.createElement("Document")
kml.appendChild(d)
nel = doc.createElement("name")
name = doc.createTextNode("KML Epigrass data file")
nel.appendChild(name)
d.appendChild(nel)
desc = doc.createElement("description")
d.appendChild(desc)
desc.appendChild(doc.createTextNode("Polygons with data"))
self.dnode = d
def get_hex_color(self, value):
jet = cm.get_cmap("jet", 50)
rgba = jet(value * 50)
bgrcol = list(rgba[:-1]) #rgb(list)
bgrcol.reverse() #turn it into bgr
hexcol = "#80" + rgb2hex(bgrcol)[1:] #abgr Alpha set to 128
return hexcol
def addNodes(self, layer, names=None):
"""
Adds a node to the document.
d is the document element KML dom object.
layer is a layer with polygons
names is a dictionary of names indexed by geocode(int)
"""
doc = self.dnode
layer.ResetReading()
while 1:
f = layer.GetNextFeature()
if not f:#exit after the last feature
break
prevalence = float(f.GetField("prevalence"))
hexcol = self.get_hex_color(prevalence)
g = f.GetGeometryRef()
if g.GetGeometryType() == 3:
geoc = f.GetFieldAsInteger("geocode")
if not names:
name = ""
else:
try:
name = str(geoc) + "-" + names[geoc]
except KeyError:
print geoc
name = ""
description = "Prevalence: %s;\nTotal cases: %s;\nImported Cases: %s;" % (
prevalence, f.GetField("totalcases"), f.GetField("arrivals"))
locale.setlocale(locale.LC_ALL, "C") #avoids conversion of decimal points
gml = g.ExportToGML() #extract the coordinates from the GML representation
coords = gml.split('')[1].split(' ')[0]
coords = " ".join([i + ",0" for i in coords.split(" ")]) #add z coordinate
#create the kml elements
#placemark and sub elements
pm = self.kmldoc.createElement("Placemark")
nm = self.kmldoc.createElement("name")
nm.appendChild(self.kmldoc.createTextNode(name))
desc = self.kmldoc.createElement("description")
desc.appendChild(self.kmldoc.createTextNode(description))
pm.appendChild(nm)
pm.appendChild(desc)
#style and subelements
st = self.kmldoc.createElement("Style")
pm.appendChild(st)
ps = self.kmldoc.createElement("PolyStyle")
color = self.kmldoc.createElement("color")
color.appendChild(self.kmldoc.createTextNode(hexcol))
ps.appendChild(color)
fill = self.kmldoc.createElement("fill")
fill.appendChild(self.kmldoc.createTextNode("1"))
ps.appendChild(fill)
outline = self.kmldoc.createElement("outline")
outline.appendChild(self.kmldoc.createTextNode("1"))
ps.appendChild(outline)
st.appendChild(ps)
doc.appendChild(pm)
#Multigeometry
mg = self.kmldoc.createElement("MultiGeometry")
pm.appendChild(mg)
polygon = self.kmldoc.createElement("Polygon")
mg.appendChild(polygon)
ob = self.kmldoc.createElement("outerBoundaryIs")
polygon.appendChild(ob)
linr = self.kmldoc.createElement("LinearRing")
ob.appendChild(linr)
coordin = self.kmldoc.createElement("coordinates")
linr.appendChild(coordin)
coordin.appendChild(self.kmldoc.createTextNode(coords))
def writeToFile(self, dir):
"""
Writes the kml file to disk
"""
fullpath = os.path.join(dir, "Data.kml")
f = open(fullpath, "w")
f.write(self.kmldoc.toxml())
f.close()
if __name__ == "__main__":
# opening data source
w = World('riozonas_LatLong.shp', 'nome_zonas', 'zona_trafe')
layer = w.ds.GetLayerByName(w.layerlist[0])
w.get_node_list(layer)
w.draw_layer(layer)
w.save_data_geojson(layer)
w.create_node_layer()
w.nodesource.Destroy() #flush data to disk
## k = KmlGenerator()
## k.addNodes(w.datasource.GetLayer(0))
## k.writeToFile()
epigrass-2.4.7/Epigrass/epigrass.py 0000775 0000000 0000000 00000067764 12777657147 017323 0 ustar root root 0000000 0000000 #!/usr/bin/env python
# -*- coding: utf-8 -*-
import logging, os
import logging.handlers
LOG_FILENAME = os.path.join(os.environ['HOME'], 'epigrass_errors.out')
epigrassLogger = logging.getLogger('epigrassLogger')
epigrassLogger.setLevel(logging.ERROR)
handler = logging.handlers.RotatingFileHandler(LOG_FILENAME, maxBytes=20000, backupCount=1)
epigrassLogger.addHandler(handler)
try:
from PyQt4 import QtCore, QtGui
from PyQt4.QtGui import *
except ImportError:
epigrassLogger.error("Please install PyQT 4")
print "Please install PyQT 4"
from manager import *
from threading import Thread, Condition
import threading, subprocess, glob
from Ui_cpanel4new import Ui_MainWindow
from Ui_about4 import Ui_aboutDialog as aboutDialog
import sys, ConfigParser, string, copy, commands, getpass
import epiplay as epi
import spread, dgraph
class MainWindow_Impl(QtGui.QMainWindow, Ui_MainWindow):
sequenceNumber = 1
windowList = []
def __init__(self):
QtGui.QMainWindow.__init__(self, None)
self.app = app
self.QtCore = QtCore
self.setupUi(self)
#determining the user's home directory
home = os.curdir # Default
if 'HOME' in os.environ:
home = os.environ['HOME']
elif os.name == 'posix':
home = os.path.expanduser("~/")
elif os.name == 'nt':
if 'HOMEPATH' in os.environ:
if 'HOMEDRIVE' in os.environ:
home = os.environ['HOMEDRIVE'] + os.environ['HOMEPATH']
else:
home = os.environ['HOMEPATH']
self.home = home
self.epigrassrc = os.path.join(home, ".epigrassrc")
# set Translation
self.curdir = os.getcwd()
self.rootdir = os.getcwd()
if os.access(self.epigrassrc, os.F_OK):
try:
self.conf = self.loadRcFile(self.epigrassrc)
lang = self.conf['settings.language']
except:
lang = ''
#print lang
else:
lang = ''
tr = QtCore.QTranslator(app)
loadLang(app, tr, lang)
# Overload connections
self.connect(self.editButton, QtCore.SIGNAL("released()"), self.editScript)
self.connect(self.chooseButton, QtCore.SIGNAL("released()"), self.chooseScript)
self.connect(self.buttonExit, QtCore.SIGNAL("released()"), self.onExit)
self.connect(self.buttonRun, QtCore.SIGNAL("released()"), self.onRun)#Thread)
self.connect(self.buttonHelp, QtCore.SIGNAL("released()"), self.onHelp)
self.connect(self.dbBackup, QtCore.SIGNAL("released()"), self.onDbBackup)
self.connect(self.dbInfo, QtCore.SIGNAL("released()"), self.onDbInfo)
# self.connect(self.repOpen,QtCore.SIGNAL("released()"),self.onRepOpen)
self.connect(self.playButton, QtCore.SIGNAL("released()"), self.onPlayButton)
# self.connect(self.playButton_2D,QtCore.SIGNAL("released()"),self.onPlayButton_2D)
self.connect(self.dbscanButton, QtCore.SIGNAL("released()"), self.onVisual)
self.connect(self.consensusButton, QtCore.SIGNAL("released()"), self.onConsensus)
self.connect(self.tableList, QtCore.SIGNAL("activated(int)"), self.getVariables)
self.connect(self.dbType, QtCore.SIGNAL("activated(int)"), self.setBackend)
QtCore.QMetaObject.connectSlotsByName(self)
self.upGUITimer = QtCore.QTimer()
self.connect(self.upGUITimer, QtCore.SIGNAL("timeout()"), app.processEvents)
self.upGUITimer.start(100)
usern = getpass.getuser() #Get the user name
#check if rc file exists if not, creates one
if not os.access(self.epigrassrc, os.F_OK):
self.initRc()
else:#read existing configuration file
self.conf = self.loadRcFile(self.epigrassrc)
self.fillGui(self.conf)
self.sim = None
def openGraphDisplay(self, shp='', namefield='', geocfield='', nlist=[], elist=[]):
"""
Starts the Qt map display
shp: shapefile fname
"""
self.graphDisplay = dgraph.MapWindow()
self.windowList.append(self.graphDisplay)
#self.graphDisplay.move(self.x()+40, self.y()+40)
if shp:
self.graphDisplay.drawMap(shp, namefield, geocfield)
else:
self.graphDisplay.drawGraph(nlist, elist)
self.graphDisplay.show()
def initRc(self):
"""
Initializes the epigrassrc file.
"""
usern = getpass.getuser() #Get the user name
f = open(self.epigrassrc, 'w')
rcskel = ['#EpiGrass Configuration File',
'[model]',
'script=script.epg',
'[database]',
'backend=sqlite',
'host=localhost',
'port=3306',
'user=epigrass',
'[settings]',
'name=John Doe',
'editor=kate',
'pdfviewer=kghostview',
'language=en'
]
for i in rcskel:
f.write(i)
f.write('\n')
f.close()
#fills the gui with default values
self.conf = self.loadRcFile(self.epigrassrc)
self.fillGui(self.conf)
os.chdir(self.curdir)
def updateRc(self):
"""
Updates the epigrassrc file with the contents of the configuration
dictionary.
"""
usern = getpass.getuser() #Get the user name
if os.access(self.epigrassrc, os.F_OK):
os.remove(self.epigrassrc)
f = open(self.epigrassrc, 'w')
rcskel = ['#EpiGrass Configuration File',
'[model]',
'script=%s' % self.conf['model.script'],
'[database]',
'backend=%s' % self.conf['database.backend'],
'host=%s' % self.conf['database.host'],
'port=%s' % self.conf['database.port'],
'user=%s' % self.conf['database.user'],
'[settings]',
'name=%s' % self.conf['settings.name'],
'editor=%s' % self.conf['settings.editor'],
'pdfviewer=%s' % self.conf['settings.pdfviewer'],
'language=%s' % self.conf['settings.language']
]
for i in rcskel:
f.write(i)
f.write('\n')
f.close()
def loadRcFile(self, fname, config={}):
"""
Loads epigrassrc.
Returns a dictionary with keys of the form
. and the corresponding values.
"""
config = config.copy()
cp = ConfigParser.SafeConfigParser()
cp.read(fname)
for sec in cp.sections():
name = string.lower(sec)
for opt in cp.options(sec):
config[name + "." + string.lower(opt)] = string.strip(cp.get(sec, opt))
os.chdir(self.curdir)
return config
def fillGui(self, conf):
"""
Fill the gui fields from configuration dictionary conf.
"""
if self.conf['settings.language'] == 'pt_BR':
self.langCombo.setCurrentIndex(1)
elif self.conf['settings.language'] == 'fr':
self.langCombo.setCurrentIndex(2)
elif self.conf['settings.language'] == 'ru':
self.langCombo.setCurrentIndex(3)
elif self.conf['settings.language'] == 'es':
self.langCombo.setCurrentIndex(4)
else:
self.langCombo.setCurrentIndex(0)
try:
self.scriptNameEdit.setText(conf['model.script'])
self.hostnEdit.setText(conf['database.host'])
self.portEdit.setText(conf['database.port'])
self.uidEdit.setText(conf['database.user'])
self.unameEdit.setText(conf['settings.name'])
self.editorEdit.setText(conf['settings.editor'])
self.pdfEdit.setText(conf['settings.pdfviewer'])
except KeyError, v:
V = v.__str__().split('.')
QMessageBox.information(None,
self.trUtf8("Syntax Error"),
self.trUtf8("""Please check file .epigrassrc for missing %s keyword
from section %s """ % (V[1], V[0])))
## usern = pwd.getpwuid(os.getuid())[0] #Get the user name
## os.system('rm /home/'+usern+'.epigrassrc')
## self.initRc()
def checkConf(self):
"""
Check if the configuration dictionary is complete
"""
if not self.conf:
self.initRc()
for i in self.conf.items():
if not i[1]:
QMessageBox.information(None,
self.trUtf8("Incomplete Configuration"),
self.trUtf8("""Please enter a value for %s.""" % i[0]),
self.trUtf8("&OK"))
return 0
return 1
def editScript(self):
"""
Opens the model script with the user's preferred editor.
"""
if self.editorEdit.text() and self.scriptNameEdit.text():
ed = str(self.editorEdit.text())
scr = str(self.scriptNameEdit.text())
os.system('%s %s' % (ed, scr))
else:
QMessageBox.warning(None,
self.trUtf8("Editor or Script not selected"),
self.trUtf8("""Please make sure you have selected both
an editor and your model's script."""),
self.trUtf8("&OK"))
def chooseScript(self):
"""
starts the file selction dialog for the script.
"""
scrname = QFileDialog.getOpenFileName( \
None,
self.trUtf8("Select your Model's Script"),
QtCore.QString(),
self.trUtf8("*.epg"),
None)
# scrname = QFileDialog.getOpenFileName(\
# QtCore.QString.null,
# self.trUtf8("*.epg"),
# None, None,
# self.trUtf8("Select your Model's Script"),
# None, 1)
self.scriptNameEdit.setText(scrname)
self.conf['model.script'] = scrname
def readGui(self):
"""
Gets the info from the GUI into the configuration dictionary.
"""
self.conf['model.script'] = str(self.scriptNameEdit.text())
self.conf['database.host'] = str(self.hostnEdit.text())
self.conf['database.port'] = int(str(self.portEdit.text()))
self.conf['database.user'] = str(self.uidEdit.text())
self.conf['database.backend'] = str(self.dbType.currentText()).lower()
self.conf['settings.name'] = unicode(str(self.unameEdit.text()))
self.conf['settings.editor'] = str(self.editorEdit.text())
self.conf['settings.pdfviewer'] = str(self.pdfEdit.text())
os.chdir(os.path.split(self.conf['model.script'])[0])
#print os.getcwd()
if int(self.langCombo.currentIndex()) == 1:
self.conf['settings.language'] = 'pt_BR'
elif int(self.langCombo.currentIndex()) == 2:
self.conf['settings.language'] = 'fr'
elif int(self.langCombo.currentIndex()) == 3:
self.conf['settings.language'] = 'ru'
elif int(self.langCombo.currentIndex()) == 4:
self.conf['settings.language'] = 'es'
else:
self.conf['settings.language'] = 'en'
def onRun(self):
"""
starts the simulation when the run button is pressed
"""
self.stepLCD.display(0)
self.tabWidget.setCurrentIndex(2)
self.readGui()
self.updateRc()
if self.checkConf():
if not self.dbType.currentIndex():
if not self.pwEdit.text():
QMessageBox.warning(None,
self.trUtf8("Missing Database Password"),
self.trUtf8("""Please enter password for MySQL database."""))
return
self.buttonRun.setEnabled(0)
self.sim = S = simulate(fname=self.conf['model.script'], host=self.conf['database.host'],
port=int(self.conf['database.port']),
db='epigrass', user=self.conf['database.user'], password=str(self.pwEdit.text()),
backend=str(self.dbType.currentText()).lower())
S.gui = self
# if S.shapefile:
# self.openGraphDisplay(S.shapefile[0], S.shapefile[1],S.shapefile[2] )
self.RT = RunThread(S)
# QtCore.QObject.connect(self.RT,QtCore.SIGNAL("drawStep"), self.graphDisplay.drawStep)
if not S.replicas:
self.RT.start()
self.buttonRun.setEnabled(1)
else: #Repeated runs
self.repRuns(S)
self.buttonRun.setEnabled(1)
# In case of a batch
if S.Batch:
self.textEdit1.insertPlainText(self.trUtf8('Simulation Started.'))
# run the batch list
for i in S.Batch:
#Makes sure it comes back to original directory before opening models in the batch list
os.chdir(self.sim.dir)
# Generates the simulation object
self.sim = T = simulate(fname=i, host=self.conf['database.host'],
port=int(self.conf['database.port']),
db='epigrass', user=self.conf['database.user'],
password=str(self.pwEdit.text()),
backend=str(self.dbType.currentText()).lower())
T.gui = self
print 'starting model %s' % i
T.start() # Start the simulation
self.textEdit1.insertPlainText('Done!')
self.buttonRun.setEnabled(1)
#print 'Agora...'
spread.Spread(self.sim.g, self.sim.outdir, self.sim.encoding)
#spdisp.display()
else:
self.buttonRun.setEnabled(1)
return
def repRuns(self, S):
"""
Do repeated runs
"""
nseeds = S.seed[0][2] #number o individual to be used as seeds
randseed = S.randomize_seeds
print "replicas type", randseed
if randseed:
seeds = S.randomizeSeed(randseed)
reps = S.replicas
for i in xrange(reps):
print "Starting replica number %s" % i
self.textEdit1.insertPlainText("Starting replica number %s" % i)
self.sim = S = simulate(fname=self.conf['model.script'], host=self.conf['database.host'],
port=int(self.conf['database.port']),
db='epigrass', user=self.conf['database.user'], password=str(self.pwEdit.text()),
backend=str(str(self.dbType.currentText()).lower()))
S.gui = self
if randseed:
S.setSeed(seeds[i], nseeds)
S.round = i
S.shpout = False
S.start()
del S, self.sim
# if S.Rep: #Generate report if necessary
# rep = Rp.report(S)
# self.textEdit1.insertPlainText('Report generation started.')
# rep.Assemble(S.Rep)
# del S
def onDbBackup(self):
"""
Dumps the epigrass databse to an sql file.
"""
if self.conf['database.host'] != 'localhost':
QMessageBox.warning(None,
self.trUtf8("Non-local Database Server"),
self.trUtf8("""Currently, the database backup function only
works on local database servers."""),
self.trUtf8("&OK"))
os.system('mysqldump -u %s -p%s --opt epigrass > epigrass.sql' % (str(self.uidEdit.text()), self.pwEdit.text()))
QMessageBox.information(None,
self.trUtf8("Restore Instructions:"),
self.trUtf8("""The epigrass database has been Backed up
to a file named "epigrass.sql".
This file is in you current working directory.
To restore the database type:
epigrass.sql > mysql"""),
self.trUtf8("&OK"))
def onDbInfo(self):
pass
def onHelp(self):
"""
Opens the userguide
"""
aboutD = QtGui.QDialog()
ab = aboutDialog()
ab.setupUi(aboutD)
aboutD.show()
aboutD.exec_()
# if os.path.exists('/usr/share/epigrass/docs/Epigrass.pdf'):
# try:
# os.system('%s /usr/share/epigrass/docs/Epigrass.pdf'%str(self.pdfEdit.text()))
# except:
# QMessageBox.warning(None,
# self.trUtf8("Help not available"),
# self.trUtf8("""Could not open user guide.
# Please make sure your chosen PDF viewer is installed."""),
# self.trUtf8("&OK"))
def onRepOpen(self):
"""
Opens the report PDF
"""
out = commands.getstatusoutput('%s %s' % (self.conf['settings.pdfviewer'], self.sim.repname))
if out[0] != 0:
QMessageBox.warning(None,
self.trUtf8("No Report"),
self.trUtf8("""Could not open the report.
Make sure you have generated it."""),
self.trUtf8("&OK"))
def find_data_dirs(self):
print "scanning"
basedir = self.rootdir
os.chdir(basedir)
datadirs = [] #list of outdata directories
while datadirs == []:
basedir = str(QFileDialog.getExistingDirectory( \
None,
self.trUtf8("Select a Directory"),
QtCore.QString(),
QFileDialog.Options(QFileDialog.ShowDirsOnly)))
os.chdir(basedir)
datadirs = [d for d in glob.glob("outdata-*") if os.path.isdir(d)] #list of outdata directories
return basedir, datadirs
def onVisual(self):
"""
Scan the epigrass database an shows available simulations.
"""
basedir, datadirs = self.find_data_dirs()
if self.dbType.currentIndex() == 0:
if not self.pwEdit.text():
QMessageBox.warning(None,
self.trUtf8("Missing Database Password"),
self.trUtf8(
"""Please enter the password for the MySQL database in the first tab."""))
return
# for SQLite databases check for the existence os the database file.
elif self.dbType.currentIndex() == 1:
print "sqlite"
if len(datadirs) > 1:
datadir = str(QtGui.QInputDialog.getItem( \
None,
self.trUtf8("Please Select Database to Open"),
self.trUtf8("Database"),
datadirs,
0, False)[0])
elif len(datadirs) == 0:
QtGui.QMessageBox.critical(None,
self.trUtf8("Invalid Folder"),
self.trUtf8(
"""This directory does not contain a model outdata subdirectory. """),
QtGui.QMessageBox.StandardButtons( \
QtGui.QMessageBox.Abort))
else:
datadir = datadirs[0]
print basedir
print datadir
fulldatadir = os.path.join(basedir, datadir)
os.chdir(fulldatadir)
print os.getcwd()
if not os.path.exists('Epigrass.sqlite'):
QtGui.QMessageBox.warning(None,
self.trUtf8("No Database found"),
self.trUtf8("""Please try again"""),
QtGui.QMessageBox.StandardButtons( \
QtGui.QMessageBox.Ok))
os.chdir(basedir)
print os.getcwd()
self.Display = epi.viewer(host=str(self.hostnEdit.text()), port=int(str(self.portEdit.text())),
db='epigrass', user=str(self.uidEdit.text()), pw=str(self.pwEdit.text()),
backend=self.conf['database.backend'], gui=self)
os.chdir(fulldatadir)
for s in self.Display.tables:
if s.endswith('_meta'):
self.tableList.insertItem(0, s[:-5])
#check for available maps
maplist = [i for i in os.listdir(os.getcwd()) if i.endswith('.shp')]
for m in maplist:
self.mapList.insertItem(0, m)
def getVariables(self):
"""
Fill the variables list whenever a table is selected in the table list
"""
self.variableList.clear()
table = str(self.tableList.currentText())
self.vars = self.Display.getFields(table)
for s in self.vars:
if s not in ['id', 'name', 'geocode', 'lat', 'longit', 'time']:
self.variableList.insertItem(0, s)
#TODO: read meta-info from table and show in the tooltip
# self.tableList.setToolTip('')
def onPlayButton(self):
"""
Calls the epiplay module to replay the epidemic from a database table.
"""
#get variable to animate and its position in the database
var = str(self.variableList.currentText())
pos = self.vars.index(var)
r = self.rateSpinBox.value()
table = str(self.tableList.currentText())
if self.Display.shapefile:
mapa = self.Display.shapefile[0]
else:
mapa = None
modname = table.split('_')[0] #self.sim.modelName.split('/')[-1]
#change to the outdata directory
if not os.path.split(os.getcwd())[1].startswith("outdata"):
os.chdir("outdata-" + modname)
nodes, am = self.Display.readNodes(modname, table)
if not nodes:
QMessageBox.warning(None,
self.trUtf8("Empty Table"),
self.trUtf8("""You have selected an empty table.
Please select another table from the menu."""))
return
numbnodes = len(nodes)
data = self.Display.readData(table)
edata = self.Display.readEdges(table)
# os.chdir(self.rootdir)
numbsteps = len(data) / numbnodes
self.Display.viewGraph(nodes, am, var, mapa)
self.Display.anim(data, edata, numbsteps, pos, r)
#Future(self.Display.keyin,data,edata,numbsteps,pos,r)
#self.Display.keyin(data,edata,numbsteps,pos,r)
def onConsensus(self):
"""
Build the consensus tree
"""
modelpath = os.path.split(self.conf['model.script'])[0]
print type(modelpath)
path = QFileDialog.getExistingDirectory( \
self.trUtf8(modelpath),
None, None,
self.trUtf8("Select Directory with Tree Files (epipath*.csv)"),
1, 1)
cutoff = QInputDialog.getDouble( \
self.trUtf8("Branch Support"),
self.trUtf8("Enter minimum branch support level to display:"),
50.0, 0.0, 100.0, 1)
cons = spread.Consensus(str(path), cutoff)
def setBackend(self):
"""
activate/deactivate db spec groupbox
"""
self.backend = self.conf['database.backend'] = str(self.dbType.currentText()).lower()
#print self.backend
if self.dbType.currentIndex():
self.dbSpecGroupBox.setEnabled(0)
self.dbBackup.setEnabled(0)
else:
self.dbSpecGroupBox.setEnabled(1)
self.dbBackup.setEnabled(1)
def onExit(self):
"""
Close the gui
"""
self.close()
class Future:
"""
By David Perry - http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/84317
To run a function in a separate thread, simply put it in a Future:
>>> A=Future(longRunningFunction, arg1, arg2 ...)
It will continue on its merry way until you need the result of your function.
You can read the result by calling the Future like a function, for example:
>>> print A()
If the Future has completed executing, the call returns immediately.
If it is still running, then the call blocks until the function completes.
The result of the function is stored in the Future, so subsequent calls to
it return immediately.
A few caveats:
Since one wouldn't expect to be able to change the result of a function,
Futures are not meant to be mutable. This is enforced by requiring the
Future to be "called", rather than directly reading __result. If desired,
stronger enforcement of this rule can be achieved by playing
with __getattr__ and __setattr__.
The Future only runs the function once, no matter how many times you
read it. You will have to re-create the Future if you want to re-run your
function; for example, if the function is sensitive to the time of day.
For more information on Futures, and other useful parallel programming
constructs, read Gregory V. Wilson's _Practical Parallel Programming_.
"""
def __init__(self, func, *param):
# Constructor
self.__done = 0
self.__result = None
self.__status = 'working'
self.__C = Condition() # Notify on this Condition when result is ready
# Run the actual function in a separate thread
self.__T = Thread(target=self.Wrapper, args=(func, param))
self.__T.setName("FutureThread")
self.__T.start()
def __repr__(self):
return ''
def __call__(self):
self.__C.acquire()
while self.__done == 0:
self.__C.wait()
self.__C.release()
# We deepcopy __result to prevent accidental tampering with it.
a = copy.deepcopy(self.__result)
return a
def Wrapper(self, func, param):
# Run the actual function, and let us housekeep around it
self.__C.acquire()
try:
self.__result = func(*param)
except:
self.__result = "Exception raised within Future"
self.__done = 1
self.__status = `self.__result`
self.__C.notify()
self.__C.release()
def loadLang(app, tr, lang):
"""
loads the language based on the user's choice.
"""
if lang == 'pt_BR':
tr.load('manager_pt_BR', '.')
app.installTranslator(tr)
elif lang == 'fr':
tr.load('epigrass_fr', '.')
app.installTranslator(tr)
elif lang == 'es':
tr.load('epigrass_es', '.')
app.installTranslator(tr)
elif lang == 'ru':
tr.load('epigrass_ru_RU', '.')
app.installTranslator(tr)
else:
pass
def main():
global app
app = QtGui.QApplication(sys.argv)
w = MainWindow_Impl()
w.show()
sys.exit(app.exec_())
class RunThread(QtCore.QThread):
"""
Worker Thread to run the simulation in a separate thread in order to allow the updating of the GUI to take place
"""
def __init__(self, sim, parent=None):
QtCore.QThread.__init__(self, parent)
self.mutex = QtCore.QMutex()
self.condition = QtCore.QWaitCondition()
self.sim = sim
def __del__(self):
self.mutex.lock()
self.condition.wakeOne()
self.mutex.unlock()
self.wait()
def go(self):
locker = QtCore.QMutexLocker(self.mutex)
self.start()
def run(self):
self.sim.start()
self.mutex.lock()
self.condition.wait(self.mutex)
self.mutex.unlock()
if __name__ == "__main__":
main()
epigrass-2.4.7/Epigrass/epigrass.py.bak 0000775 0000000 0000000 00000067714 12727601517 020033 0 ustar root root 0000000 0000000 #!/usr/bin/env python
# -*- coding: utf-8 -*-
import logging, os
import logging.handlers
LOG_FILENAME = os.path.join(os.environ['HOME'], 'epigrass_errors.out')
epigrassLogger = logging.getLogger('epigrassLogger')
epigrassLogger.setLevel(logging.ERROR)
handler = logging.handlers.RotatingFileHandler(LOG_FILENAME, maxBytes=20000, backupCount=1)
epigrassLogger.addHandler(handler)
try:
from PyQt4 import QtCore, QtGui
from PyQt4.QtGui import *
except ImportError:
epigrassLogger.error("Please install PyQT 4")
print "Please install PyQT 4"
from manager import *
import threading, subprocess, glob
from Ui_cpanel4new import Ui_MainWindow
from Ui_about4 import Ui_aboutDialog as aboutDialog
import sys, ConfigParser, string, copy, commands, getpass
import epiplay as epi
import spread, dgraph
class MainWindow_Impl(QtGui.QMainWindow, Ui_MainWindow):
sequenceNumber = 1
windowList = []
def __init__(self):
QtGui.QMainWindow.__init__(self, None)
self.app = app
self.QtCore = QtCore
self.setupUi(self)
#determining the user's home directory
home = os.curdir # Default
if 'HOME' in os.environ:
home = os.environ['HOME']
elif os.name == 'posix':
home = os.path.expanduser("~/")
elif os.name == 'nt':
if 'HOMEPATH' in os.environ:
if 'HOMEDRIVE' in os.environ:
home = os.environ['HOMEDRIVE'] + os.environ['HOMEPATH']
else:
home = os.environ['HOMEPATH']
self.home = home
self.epigrassrc = os.path.join(home, ".epigrassrc")
# set Translation
self.curdir = os.getcwd()
self.rootdir = os.getcwd()
if os.access(self.epigrassrc, os.F_OK):
try:
self.conf = self.loadRcFile(self.epigrassrc)
lang = self.conf['settings.language']
except:
lang = ''
#print lang
else:
lang = ''
tr = QtCore.QTranslator(app)
loadLang(app, tr, lang)
# Overload connections
self.connect(self.editButton, QtCore.SIGNAL("released()"), self.editScript)
self.connect(self.chooseButton, QtCore.SIGNAL("released()"), self.chooseScript)
self.connect(self.buttonExit, QtCore.SIGNAL("released()"), self.onExit)
self.connect(self.buttonRun, QtCore.SIGNAL("released()"), self.onRun)#Thread)
self.connect(self.buttonHelp, QtCore.SIGNAL("released()"), self.onHelp)
self.connect(self.dbBackup, QtCore.SIGNAL("released()"), self.onDbBackup)
self.connect(self.dbInfo, QtCore.SIGNAL("released()"), self.onDbInfo)
# self.connect(self.repOpen,QtCore.SIGNAL("released()"),self.onRepOpen)
self.connect(self.playButton, QtCore.SIGNAL("released()"), self.onPlayButton)
# self.connect(self.playButton_2D,QtCore.SIGNAL("released()"),self.onPlayButton_2D)
self.connect(self.dbscanButton, QtCore.SIGNAL("released()"), self.onVisual)
self.connect(self.consensusButton, QtCore.SIGNAL("released()"), self.onConsensus)
self.connect(self.tableList, QtCore.SIGNAL("activated(int)"), self.getVariables)
self.connect(self.dbType, QtCore.SIGNAL("activated(int)"), self.setBackend)
QtCore.QMetaObject.connectSlotsByName(self)
self.upGUITimer = QtCore.QTimer()
self.connect(self.upGUITimer, QtCore.SIGNAL("timeout()"), app.processEvents)
self.upGUITimer.start(100)
usern = getpass.getuser() #Get the user name
#check if rc file exists if not, creates one
if not os.access(self.epigrassrc, os.F_OK):
self.initRc()
else:#read existing configuration file
self.conf = self.loadRcFile(self.epigrassrc)
self.fillGui(self.conf)
self.sim = None
def openGraphDisplay(self, shp='', namefield='', geocfield='', nlist=[], elist=[]):
"""
Starts the Qt map display
shp: shapefile fname
"""
self.graphDisplay = dgraph.MapWindow()
self.windowList.append(self.graphDisplay)
#self.graphDisplay.move(self.x()+40, self.y()+40)
if shp:
self.graphDisplay.drawMap(shp, namefield, geocfield)
else:
self.graphDisplay.drawGraph(nlist, elist)
self.graphDisplay.show()
def initRc(self):
"""
Initializes the epigrassrc file.
"""
usern = getpass.getuser() #Get the user name
f = open(self.epigrassrc, 'w')
rcskel = ['#EpiGrass Configuration File',
'[model]',
'script=script.epg',
'[database]',
'backend=sqlite',
'host=localhost',
'port=3306',
'user=epigrass',
'[settings]',
'name=John Doe',
'editor=kate',
'pdfviewer=kghostview',
'language=en'
]
for i in rcskel:
f.write(i)
f.write('\n')
f.close()
#fills the gui with default values
self.conf = self.loadRcFile(self.epigrassrc)
self.fillGui(self.conf)
os.chdir(self.curdir)
def updateRc(self):
"""
Updates the epigrassrc file with the contents of the configuration
dictionary.
"""
usern = getpass.getuser() #Get the user name
if os.access(self.epigrassrc, os.F_OK):
os.remove(self.epigrassrc)
f = open(self.epigrassrc, 'w')
rcskel = ['#EpiGrass Configuration File',
'[model]',
'script=%s' % self.conf['model.script'],
'[database]',
'backend=%s' % self.conf['database.backend'],
'host=%s' % self.conf['database.host'],
'port=%s' % self.conf['database.port'],
'user=%s' % self.conf['database.user'],
'[settings]',
'name=%s' % self.conf['settings.name'],
'editor=%s' % self.conf['settings.editor'],
'pdfviewer=%s' % self.conf['settings.pdfviewer'],
'language=%s' % self.conf['settings.language']
]
for i in rcskel:
f.write(i)
f.write('\n')
f.close()
def loadRcFile(self, fname, config={}):
"""
Loads epigrassrc.
Returns a dictionary with keys of the form
. and the corresponding values.
"""
config = config.copy()
cp = ConfigParser.SafeConfigParser()
cp.read(fname)
for sec in cp.sections():
name = string.lower(sec)
for opt in cp.options(sec):
config[name + "." + string.lower(opt)] = string.strip(cp.get(sec, opt))
os.chdir(self.curdir)
return config
def fillGui(self, conf):
"""
Fill the gui fields from configuration dictionary conf.
"""
if self.conf['settings.language'] == 'pt_BR':
self.langCombo.setCurrentIndex(1)
elif self.conf['settings.language'] == 'fr':
self.langCombo.setCurrentIndex(2)
elif self.conf['settings.language'] == 'ru':
self.langCombo.setCurrentIndex(3)
elif self.conf['settings.language'] == 'es':
self.langCombo.setCurrentIndex(4)
else:
self.langCombo.setCurrentIndex(0)
try:
self.scriptNameEdit.setText(conf['model.script'])
self.hostnEdit.setText(conf['database.host'])
self.portEdit.setText(conf['database.port'])
self.uidEdit.setText(conf['database.user'])
self.unameEdit.setText(conf['settings.name'])
self.editorEdit.setText(conf['settings.editor'])
self.pdfEdit.setText(conf['settings.pdfviewer'])
except KeyError, v:
V = v.__str__().split('.')
QMessageBox.information(None,
self.trUtf8("Syntax Error"),
self.trUtf8("""Please check file .epigrassrc for missing %s keyword
from section %s """ % (V[1], V[0])))
## usern = pwd.getpwuid(os.getuid())[0] #Get the user name
## os.system('rm /home/'+usern+'.epigrassrc')
## self.initRc()
def checkConf(self):
"""
Check if the configuration dictionary is complete
"""
if not self.conf:
self.initRc()
for i in self.conf.items():
if not i[1]:
QMessageBox.information(None,
self.trUtf8("Incomplete Configuration"),
self.trUtf8("""Please enter a value for %s.""" % i[0]),
self.trUtf8("&OK"))
return 0
return 1
def editScript(self):
"""
Opens the model script with the user's preferred editor.
"""
if self.editorEdit.text() and self.scriptNameEdit.text():
ed = str(self.editorEdit.text())
scr = str(self.scriptNameEdit.text())
os.system('%s %s' % (ed, scr))
else:
QMessageBox.warning(None,
self.trUtf8("Editor or Script not selected"),
self.trUtf8("""Please make sure you have selected both
an editor and your model's script."""),
self.trUtf8("&OK"))
def chooseScript(self):
"""
starts the file selction dialog for the script.
"""
scrname = QFileDialog.getOpenFileName( \
None,
self.trUtf8("Select your Model's Script"),
QtCore.QString(),
self.trUtf8("*.epg"),
None)
# scrname = QFileDialog.getOpenFileName(\
# QtCore.QString.null,
# self.trUtf8("*.epg"),
# None, None,
# self.trUtf8("Select your Model's Script"),
# None, 1)
self.scriptNameEdit.setText(scrname)
self.conf['model.script'] = scrname
def readGui(self):
"""
Gets the info from the GUI into the configuration dictionary.
"""
self.conf['model.script'] = str(self.scriptNameEdit.text())
self.conf['database.host'] = str(self.hostnEdit.text())
self.conf['database.port'] = int(str(self.portEdit.text()))
self.conf['database.user'] = str(self.uidEdit.text())
self.conf['database.backend'] = str(self.dbType.currentText()).lower()
self.conf['settings.name'] = unicode(str(self.unameEdit.text()))
self.conf['settings.editor'] = str(self.editorEdit.text())
self.conf['settings.pdfviewer'] = str(self.pdfEdit.text())
os.chdir(os.path.split(self.conf['model.script'])[0])
#print os.getcwd()
if int(self.langCombo.currentIndex()) == 1:
self.conf['settings.language'] = 'pt_BR'
elif int(self.langCombo.currentIndex()) == 2:
self.conf['settings.language'] = 'fr'
elif int(self.langCombo.currentIndex()) == 3:
self.conf['settings.language'] = 'ru'
elif int(self.langCombo.currentIndex()) == 4:
self.conf['settings.language'] = 'es'
else:
self.conf['settings.language'] = 'en'
def onRun(self):
"""
starts the simulation when the run button is pressed
"""
self.stepLCD.display(0)
self.tabWidget.setCurrentIndex(2)
self.readGui()
self.updateRc()
if self.checkConf():
if not self.dbType.currentIndex():
if not self.pwEdit.text():
QMessageBox.warning(None,
self.trUtf8("Missing Database Password"),
self.trUtf8("""Please enter password for MySQL database."""))
return
self.buttonRun.setEnabled(0)
self.sim = S = simulate(fname=self.conf['model.script'], host=self.conf['database.host'],
port=int(self.conf['database.port']),
db='epigrass', user=self.conf['database.user'], password=str(self.pwEdit.text()),
backend=str(self.dbType.currentText()).lower())
S.gui = self
# if S.shapefile:
# self.openGraphDisplay(S.shapefile[0], S.shapefile[1],S.shapefile[2] )
self.RT = RunThread(S)
# QtCore.QObject.connect(self.RT,QtCore.SIGNAL("drawStep"), self.graphDisplay.drawStep)
if not S.replicas:
self.RT.start()
self.buttonRun.setEnabled(1)
else: #Repeated runs
self.repRuns(S)
self.buttonRun.setEnabled(1)
# In case of a batch
if S.Batch:
self.textEdit1.insertPlainText(self.trUtf8('Simulation Started.'))
# run the batch list
for i in S.Batch:
#Makes sure it comes back to original directory before opening models in the batch list
os.chdir(self.sim.dir)
# Generates the simulation object
self.sim = T = simulate(fname=i, host=self.conf['database.host'],
port=int(self.conf['database.port']),
db='epigrass', user=self.conf['database.user'],
password=str(self.pwEdit.text()),
backend=str(self.dbType.currentText()).lower())
T.gui = self
print 'starting model %s' % i
T.start() # Start the simulation
self.textEdit1.insertPlainText('Done!')
self.buttonRun.setEnabled(1)
#print 'Agora...'
spread.Spread(self.sim.g, self.sim.outdir, self.sim.encoding)
#spdisp.display()
else:
self.buttonRun.setEnabled(1)
return
def repRuns(self, S):
"""
Do repeated runs
"""
nseeds = S.seed[0][2] #number o individual to be used as seeds
randseed = S.randomize_seeds
print "replicas type", randseed
if randseed:
seeds = S.randomizeSeed(randseed)
reps = S.replicas
for i in xrange(reps):
print "Starting replica number %s" % i
self.textEdit1.insertPlainText("Starting replica number %s" % i)
self.sim = S = simulate(fname=self.conf['model.script'], host=self.conf['database.host'],
port=int(self.conf['database.port']),
db='epigrass', user=self.conf['database.user'], password=str(self.pwEdit.text()),
backend=str(str(self.dbType.currentText()).lower()))
S.gui = self
if randseed:
S.setSeed(seeds[i], nseeds)
S.round = i
S.shpout = False
S.start()
del S, self.sim
# if S.Rep: #Generate report if necessary
# rep = Rp.report(S)
# self.textEdit1.insertPlainText('Report generation started.')
# rep.Assemble(S.Rep)
# del S
def onDbBackup(self):
"""
Dumps the epigrass databse to an sql file.
"""
if self.conf['database.host'] != 'localhost':
QMessageBox.warning(None,
self.trUtf8("Non-local Database Server"),
self.trUtf8("""Currently, the database backup function only
works on local database servers."""),
self.trUtf8("&OK"))
os.system('mysqldump -u %s -p%s --opt epigrass > epigrass.sql' % (str(self.uidEdit.text()), self.pwEdit.text()))
QMessageBox.information(None,
self.trUtf8("Restore Instructions:"),
self.trUtf8("""The epigrass database has been Backed up
to a file named "epigrass.sql".
This file is in you current working directory.
To restore the database type:
epigrass.sql > mysql"""),
self.trUtf8("&OK"))
def onDbInfo(self):
pass
def onHelp(self):
"""
Opens the userguide
"""
aboutD = QtGui.QDialog()
ab = aboutDialog()
ab.setupUi(aboutD)
aboutD.show()
aboutD.exec_()
# if os.path.exists('/usr/share/epigrass/docs/Epigrass.pdf'):
# try:
# os.system('%s /usr/share/epigrass/docs/Epigrass.pdf'%str(self.pdfEdit.text()))
# except:
# QMessageBox.warning(None,
# self.trUtf8("Help not available"),
# self.trUtf8("""Could not open user guide.
# Please make sure your chosen PDF viewer is installed."""),
# self.trUtf8("&OK"))
def onRepOpen(self):
"""
Opens the report PDF
"""
out = commands.getstatusoutput('%s %s' % (self.conf['settings.pdfviewer'], self.sim.repname))
if out[0] != 0:
QMessageBox.warning(None,
self.trUtf8("No Report"),
self.trUtf8("""Could not open the report.
Make sure you have generated it."""),
self.trUtf8("&OK"))
def find_data_dirs(self):
print "scanning"
basedir = self.rootdir
os.chdir(basedir)
datadirs = [] #list of outdata directories
while datadirs == []:
basedir = str(QFileDialog.getExistingDirectory( \
None,
self.trUtf8("Select a Directory"),
QtCore.QString(),
QFileDialog.Options(QFileDialog.ShowDirsOnly)))
os.chdir(basedir)
datadirs = [d for d in glob.glob("outdata-*") if os.path.isdir(d)] #list of outdata directories
return basedir, datadirs
def onVisual(self):
"""
Scan the epigrass database an shows available simulations.
"""
basedir, datadirs = self.find_data_dirs()
if self.dbType.currentIndex() == 0:
if not self.pwEdit.text():
QMessageBox.warning(None,
self.trUtf8("Missing Database Password"),
self.trUtf8(
"""Please enter the password for the MySQL database in the first tab."""))
return
# for SQLite databases check for the existence os the database file.
elif self.dbType.currentIndex() == 1:
print "sqlite"
if len(datadirs) > 1:
datadir = str(QtGui.QInputDialog.getItem( \
None,
self.trUtf8("Please Select Database to Open"),
self.trUtf8("Database"),
datadirs,
0, False)[0])
elif len(datadirs) == 0:
QtGui.QMessageBox.critical(None,
self.trUtf8("Invalid Folder"),
self.trUtf8(
"""This directory does not contain a model outdata subdirectory. """),
QtGui.QMessageBox.StandardButtons( \
QtGui.QMessageBox.Abort))
else:
datadir = datadirs[0]
print basedir
print datadir
fulldatadir = os.path.join(basedir, datadir)
os.chdir(fulldatadir)
print os.getcwd()
if not os.path.exists('Epigrass.sqlite'):
QtGui.QMessageBox.warning(None,
self.trUtf8("No Database found"),
self.trUtf8("""Please try again"""),
QtGui.QMessageBox.StandardButtons( \
QtGui.QMessageBox.Ok))
os.chdir(basedir)
print os.getcwd()
self.Display = epi.viewer(host=str(self.hostnEdit.text()), port=int(str(self.portEdit.text())),
db='epigrass', user=str(self.uidEdit.text()), pw=str(self.pwEdit.text()),
backend=self.conf['database.backend'], gui=self)
os.chdir(fulldatadir)
for s in self.Display.tables:
if s.endswith('_meta'):
self.tableList.insertItem(0, s[:-5])
#check for available maps
maplist = [i for i in os.listdir(os.getcwd()) if i.endswith('.shp')]
for m in maplist:
self.mapList.insertItem(0, m)
def getVariables(self):
"""
Fill the variables list whenever a table is selected in the table list
"""
self.variableList.clear()
table = str(self.tableList.currentText())
self.vars = self.Display.getFields(table)
for s in self.vars:
if s not in ['id', 'name', 'geocode', 'lat', 'longit', 'time']:
self.variableList.insertItem(0, s)
#TODO: read meta-info from table and show in the tooltip
# self.tableList.setToolTip('')
def onPlayButton(self):
"""
Calls the epiplay module to replay the epidemic from a database table.
"""
#get variable to animate and its position in the database
var = str(self.variableList.currentText())
pos = self.vars.index(var)
r = self.rateSpinBox.value()
table = str(self.tableList.currentText())
if self.Display.shapefile:
mapa = self.Display.shapefile[0]
else:
mapa = None
modname = table.split('_')[0] #self.sim.modelName.split('/')[-1]
#change to the outdata directory
if not os.path.split(os.getcwd())[1].startswith("outdata"):
os.chdir("outdata-" + modname)
nodes, am = self.Display.readNodes(modname, table)
if not nodes:
QMessageBox.warning(None,
self.trUtf8("Empty Table"),
self.trUtf8("""You have selected an empty table.
Please select another table from the menu."""))
return
numbnodes = len(nodes)
data = self.Display.readData(table)
edata = self.Display.readEdges(table)
# os.chdir(self.rootdir)
numbsteps = len(data) / numbnodes
self.Display.viewGraph(nodes, am, var, mapa)
self.Display.anim(data, edata, numbsteps, pos, r)
#Future(self.Display.keyin,data,edata,numbsteps,pos,r)
#self.Display.keyin(data,edata,numbsteps,pos,r)
def onConsensus(self):
"""
Build the consensus tree
"""
modelpath = os.path.split(self.conf['model.script'])[0]
print type(modelpath)
path = QFileDialog.getExistingDirectory( \
self.trUtf8(modelpath),
None, None,
self.trUtf8("Select Directory with Tree Files (epipath*.csv)"),
1, 1)
cutoff = QInputDialog.getDouble( \
self.trUtf8("Branch Support"),
self.trUtf8("Enter minimum branch support level to display:"),
50.0, 0.0, 100.0, 1)
cons = spread.Consensus(str(path), cutoff)
def setBackend(self):
"""
activate/deactivate db spec groupbox
"""
self.backend = self.conf['database.backend'] = str(self.dbType.currentText()).lower()
#print self.backend
if self.dbType.currentIndex():
self.dbSpecGroupBox.setEnabled(0)
self.dbBackup.setEnabled(0)
else:
self.dbSpecGroupBox.setEnabled(1)
self.dbBackup.setEnabled(1)
def onExit(self):
"""
Close the gui
"""
self.close()
class Future:
"""
By David Perry - http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/84317
To run a function in a separate thread, simply put it in a Future:
>>> A=Future(longRunningFunction, arg1, arg2 ...)
It will continue on its merry way until you need the result of your function.
You can read the result by calling the Future like a function, for example:
>>> print A()
If the Future has completed executing, the call returns immediately.
If it is still running, then the call blocks until the function completes.
The result of the function is stored in the Future, so subsequent calls to
it return immediately.
A few caveats:
Since one wouldn't expect to be able to change the result of a function,
Futures are not meant to be mutable. This is enforced by requiring the
Future to be "called", rather than directly reading __result. If desired,
stronger enforcement of this rule can be achieved by playing
with __getattr__ and __setattr__.
The Future only runs the function once, no matter how many times you
read it. You will have to re-create the Future if you want to re-run your
function; for example, if the function is sensitive to the time of day.
For more information on Futures, and other useful parallel programming
constructs, read Gregory V. Wilson's _Practical Parallel Programming_.
"""
def __init__(self, func, *param):
# Constructor
self.__done = 0
self.__result = None
self.__status = 'working'
self.__C = Condition() # Notify on this Condition when result is ready
# Run the actual function in a separate thread
self.__T = Thread(target=self.Wrapper, args=(func, param))
self.__T.setName("FutureThread")
self.__T.start()
def __repr__(self):
return ''
def __call__(self):
self.__C.acquire()
while self.__done == 0:
self.__C.wait()
self.__C.release()
# We deepcopy __result to prevent accidental tampering with it.
a = copy.deepcopy(self.__result)
return a
def Wrapper(self, func, param):
# Run the actual function, and let us housekeep around it
self.__C.acquire()
try:
self.__result = func(*param)
except:
self.__result = "Exception raised within Future"
self.__done = 1
self.__status = `self.__result`
self.__C.notify()
self.__C.release()
def loadLang(app, tr, lang):
"""
loads the language based on the user's choice.
"""
if lang == 'pt_BR':
tr.load('manager_pt_BR', '.')
app.installTranslator(tr)
elif lang == 'fr':
tr.load('epigrass_fr', '.')
app.installTranslator(tr)
elif lang == 'es':
tr.load('epigrass_es', '.')
app.installTranslator(tr)
elif lang == 'ru':
tr.load('epigrass_ru_RU', '.')
app.installTranslator(tr)
else:
pass
def main():
global app
app = QtGui.QApplication(sys.argv)
w = MainWindow_Impl()
w.show()
sys.exit(app.exec_())
class RunThread(QtCore.QThread):
"""
Worker Thread to run the simulation in a separate thread in order to allow the updating of the GUI to take place
"""
def __init__(self, sim, parent=None):
QtCore.QThread.__init__(self, parent)
self.mutex = QtCore.QMutex()
self.condition = QtCore.QWaitCondition()
self.sim = sim
def __del__(self):
self.mutex.lock()
self.condition.wakeOne()
self.mutex.unlock()
self.wait()
def go(self):
locker = QtCore.QMutexLocker(self.mutex)
self.start()
def run(self):
self.sim.start()
self.mutex.lock()
self.condition.wait(self.mutex)
self.mutex.unlock()
if __name__ == "__main__":
main()
epigrass-2.4.7/Epigrass/epigrass.qrc 0000664 0000000 0000000 00000000535 12720633740 017411 0 ustar root root 0000000 0000000
egicon.png
HelpEpg.html
graph.png
application-exit.png
openedges.png
openshape.png
document-save.png
document-save-as.png
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* . e p g *.epg Editor " S o b r e . E P G E d i t o r About .EPG Editor Editor E l e g i r s e c c i n Choose Section Editor ` I n t r o d u z c a u n n o m b r e p a r a e l n u e v o f i c h e r o . e p g : #Enter a name for you new .epg file: Editor V I n t r o d u z c a e l n o m b r e d e l a v a r i a b l e a c r e a r ,Enter the name of the variable to be created Editor " N o m b r e d e a r c h i v o File Name Editor * A b r i r u n f i c h e r o . e p g Open .epg File Editor P L a s e c c i n r e q u e r i d a n o s e h a e n c o n t r a d o Required section missing Editor @ V a r i a b l e r e q u e r i d a n o e n c o n t r a d a Required variable missing Editor & S a l v a r a r c h i v o c o m o Save File as Editor L a s e c c i n r e q u e r i d a n o s e h a e n c o n t r a d o . S e h a a a d i d o a l a r c h i v o c o n l o s v a l o r e s p o r d e f e c t o p a r a s u s v a r i a b l e s . XSection %s was missing. It was added to your file with default values for its variables. Editor v S e l e c c i o n a l a s e c c i n a l a q u e q u i e r a a a d i r u n a v a r i a b l e : 5Select a section to which you want to add a variable: Editor h E s t e e d i t o r e s p a r a c r e a r o m o d i f i c a r a r c h i v o s . e p g . 4This editor is for creating or modifying .epg files. Editor L a v a r i a b l e % s n o s e h a e n c o n t r a d o . L a v a r i a b l e c r e a d a t e n d r l o s v a l o r e s p o r d e f e c t o BVariable %s was missing. Variable created and value set to default Editor * N o m b r e d e l a v a r i a b l e
Variable Name Editor V i s t a g e o g r f i c a Geographical View Form Replay Form , R e p r e s e n t a r s i m u l a c i n Simulation Display Form
P a r a r Stop Form " S e r i e s t e m p o r a l e s Time Series Form P u l s a r y a r r a s t r a r s o b r e l o s n o d o s , h a c e r z o o m c o n l a r u e d a d e l r a t n o l a s t e c l a s " + " o " - " VClick and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys GraphWidget V i s t a d e r e d Network View GraphWidget & S a l i r &Exit MainPanel & A y u d a &Help MainPanel & E j e c u t a r &Run MainPanel 3 3 0 6 3306 MainPanel
A l t + E Alt+E MainPanel
A l t + R Alt+R MainPanel . P o r c e n t a j e d e a n i m a c i n Animation rate MainPanel $ C o p i a d e s e g u r i d a d Backup MainPanel $ P o r t u g s B r a s i l e o Brazilian portuguese MainPanel C S V CSV MainPanel E l e g i r Choose MainPanel v P u l s a r p a r a v e r u n a p e q u e a d e s c r i p c i n d e l a B a s e d e D a t o s ;Click here for a short description of the epigrass database MainPanel ~ P u l s a r p a r a r e a l i z a r u n a c o p i a d e s e g u r i d a d d e l a B a s e d e D a t o s +Click here to backup the epigrass database MainPanel : P u l s a r p a r a s a l i r d e E p i g r a s s Click here to leave Epigrass MainPanel h P u l s a r p a r a a b r i r l a g u i a d e u s u a r i o e n e l n a v e g a d o r 3Click here to open the userguide in the web browser MainPanel D P u l s a r p a r a c o m e n z a r l a s i m u l a c i n #Click here to start your simulation MainPanel " A r b o l d e c o n s e n s o Consensus Tree MainPanel B a s e d e D a t o s Database MainPanel D E s p e c i f i c a c i n d e l a b a s e d e d a t o s Database Specification MainPanel n C o n t r a s e a d e u s u a r i o p a r a l a b a s e d e d a t o s i n t r o d u c i d a (Database password for the userid entered MainPanel , T i p o d e b a s e d e d a t o s : Database type: MainPanel E d i t a r Edit MainPanel e d i t o r Editor MainPanel I n g l s English MainPanel B I n d i c a t u e d i t o r d e P D F p r e f e r i d o +Enter the name of your preferred PDF viewer MainPanel Z I n t r o d u c i r e l p u e r t o d e e s c u c h a d e l s e r v i d o r . &Enter the port the server listens to. MainPanel d E s c r i b a s u n o m b r e c o m p l e t o . S e a a d i r a l I n f o r m e . 7Enter your full name. This will be added to the report. MainPanel F I n d i c a t u e d i t o r d e t e x t o p r e f e r i d o Enter your preferred text editor MainPanel 8 P a n e l d e c o n t r o l d e E p i g r a s s Epigrass Control Panel MainPanel F 1 F1 MainPanel F r a n c s French MainPanel
H o s t : Host: MainPanel I n f o r m a c i n Info MainPanel I d i o m a Language MainPanel $ M a p a s d i s p o n i b l e s : Maps available: MainPanel 2 e s p e c i f i c a c i n d e l m o d e l o Model Specification MainPanel
M y S Q L MySQL MainPanel N o m b r e Name MainPanel N o h a y m a p a s No map MainPanel
A b r i r Open MainPanel V i s o r d e P D F
PDF Viewer MainPanel C o n t r a s e a : Password: MainPanel P u e r t o : Port: MainPanel P r o g r e s o : Progress: MainPanel I n f o r m e Report MainPanel * O p c i o n e s d e e j e c u c i n Run Options MainPanel S Q L i t e SQLite MainPanel 2 E s c a n e a r l a B a s e d e D a t o s Scan DB MainPanel $ N o m b r e d e l s c r i p t : Script Name: MainPanel J S e l e c c i o n a r u n a s i m u l a c i n a l m a c e n a d a #Select a database stored simulation MainPanel S e l e c c i o n a u n d i r e c t o r i o c o n f i c h e r o s d e r b o l p a r a c o n s t r u i r e l c o n s e n s o . 9Select a directory with tree-files to build consensus on. MainPanel " S e l e c i o n a r u n m a r Select a map MainPanel j S e l e c c i o n a r l a v a r i a b l e a v i s u a l i z a r e n l a s i m u l a c i n -Select a variable to display in the animation MainPanel : S e l e c c i o n a i d i o m a p a r a l a G U I Select the language for the GUI MainPanel L S e l e c c i o n a e l t i p o d e t u b a s e d e d a t o s Select your database type MainPanel A j u s t e s Settings MainPanel . E s t a d o d e l a S i m u l a c i n Simulation Status MainPanel $ P a s o d e s i m u l a c i n Simulation step MainPanel , S i m u l a c i n a l m a c e n a d a : Simulations stored: MainPanel , A r b o l e s d e p r o p a g a c i n Spread Trees MainPanel * C o m e n z a r a n i m a c i n 2 D Start 2D animation MainPanel * C o m e n z a r a n i m a c i n 3 D Start 3D animation MainPanel ` E s t e e s e l U r l d e t u s e r v i d o r d e b a s e s d e d a t o s . (This is the url of your database server. MainPanel E s t e e s e l I d d e u s u s a r i o p a r a a c c e d e r a l s e r v i d o r d e b a s e s d e d a t o s 4This is the userid for accessing the database server MainPanel I d d e u s u a r i o : Userid: MainPanel U t i l i d a d e s Utilities MainPanel , V a r i a b l e a v i s u a l i z a r : Variable to display: MainPanel V i s u a l i z a c i n
Visualization MainPanel l o c a l h o s t localhost MainPanel E s c r i b e e l n o m b r e d e t u s c r i p t o p r e s i o n a e l b o t n e l e g i r a l a d e r e c h a p a r a s e l e c c i o n a r u n o . Xwrite the name of the your script or press the choose button on the right to select one. MainPanel & S o b r e &About
MainWindow & S a l i r &Exit
MainWindow & A y u d a &Help
MainWindow & N u e v o &New
MainWindow & & A b r i r a r c h i v o . e p g &Open .epg File
MainWindow & R e f r e s c a r &Refresh
MainWindow & E j e c u t a r &Run
MainWindow & G u a r d a r &Save
MainWindow E d i t o r . E P G .EPG Editor
MainWindow 3 3 0 6 3306
MainWindow < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > L e a v e t h e e d i t o r . < / p > < / b o d y > < / h t m l > qLeave the editor.
MainWindow < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > S a v e f i l e < / p > < / b o d y > < / h t m l > iSave file
MainWindow S o b r e & E P G About &Epigrass
MainWindow A a d i r v a r i a b l e Add variable
MainWindow
A l t + E Alt+E
MainWindow
A l t + R Alt+R
MainWindow . P o r c e n t a j e d e a n i m a c i n Animation rate
MainWindow A u t o & R e f r e s c o
Auto-&Refresh
MainWindow $ C o p i a d e s e g u r i d a d Backup
MainWindow $ P o r t u g s B r a s i l e o Brazilian portuguese
MainWindow C S V CSV
MainWindow E l e g i r Choose
MainWindow P u l s a r y a r r a s t r a r s o b r e l o s n o d o s c o n e l r a t n , y h a c e r z o o m c o n l a r u e d a d e l r a t n o l a s t e c l a s " + " y " - " VClick and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys
MainWindow v P u l s a r p a r a v e r u n a p e q u e a d e s c r i p c i n d e l a B a s e d e D a t o s ;Click here for a short description of the epigrass database
MainWindow ~ P u l s a r p a r a r e a l i z a r u n a c o p i a d e s e g u r i d a d d e l a B a s e d e D a t o s +Click here to backup the epigrass database
MainWindow : P u l s a r p a r a s a l i r d e E p i g r a s s Click here to leave Epigrass
MainWindow h P u l s a r p a r a a b r i r l a g u i a d e u s u a r i o e n e l n a v e g a d o r 3Click here to open the userguide in the web browser
MainWindow D P u l s a r p a r a c o m e n z a r l a s i m u l a c i n #Click here to start your simulation
MainWindow " A r b o l d e c o n s e n s o Consensus Tree
MainWindow C t r l + N Ctrl+N
MainWindow C t r l + O Ctrl+O
MainWindow C t r l + R Ctrl+R
MainWindow C t r l + 5 Ctrl+S
MainWindow C t r l + X Ctrl+X
MainWindow B a s e d e D a t o s Database
MainWindow D E s p e c i f i c a c i n d e l a b a s e d e d a t o s Database Specification
MainWindow n C o n t r a s e a d e u s u a r i o p a r a l a b a s e d e d a t o s i n t r o d u c i d a (Database password for the userid entered
MainWindow , T i p o d e b a s e d e d a t o s : Database type:
MainWindow D e s c r i p c i n Description
MainWindow S a & l i d a E&xit
MainWindow E d i t a r Edit
MainWindow E d i t o r Editor
MainWindow I n g l s English
MainWindow B I n d i c a t u e d i t o r d e P D F p r e f e r i d o +Enter the name of your preferred PDF viewer
MainWindow Z I n t r o d u c i r e l p u e r t o d e e s c u c h a d e l s e r v i d o r . &Enter the port the server listens to.
MainWindow d E s c r i b a s u n o m b r e c o m p l e t o . S e a a d i r a l I n f o r m e . 7Enter your full name. This will be added to the report.
MainWindow F I n d i c a t u e d i t o r d e t e x t o p r e f e r i d o Enter your preferred text editor
MainWindow E p i g r a s s Epigrass
MainWindow
S a l i r Exit
MainWindow F 1 F1
MainWindow A r c h i v o File
MainWindow F r a n c s French
MainWindow
A y u d a Help
MainWindow
H o s t : Host:
MainWindow I n f o r m a c i n Info
MainWindow I d i o m a Language
MainWindow $ M a p a s d i s p o n i b l e s : Maps available:
MainWindow 2 e s p e c i f i c a c i n d e l m o d e l o Model Specification
MainWindow
M y S Q L MySQL
MainWindow N o m b r e Name
MainWindow N o h a y m a p a s No map
MainWindow
A b r i r Open
MainWindow V i s o r d e P D F
PDF Viewer
MainWindow C o n t r a s e a : Password:
MainWindow P u e r t o : Port:
MainWindow P r o g r e s o : Progress:
MainWindow I n f o r m e Report
MainWindow * O p c i o n e s d e e j e c u c i n Run Options
MainWindow S Q L i t e SQLite
MainWindow 2 E s c a n e a r l a B a s e d e D a t o s Scan DB
MainWindow $ N o m b r e d e l s c r i p t : Script Name:
MainWindow J S e l e c c i o n a r u n a s i m u l a c i n a l m a c e n a d a #Select a database stored simulation
MainWindow S e l e c c i o n a u n d i r e c t o r i o c o n f i c h e r o s d e r b o l p a r a c o n s t r u i r e l c o n s e n s o . 9Select a directory with tree-files to build consensus on.
MainWindow " S e l e c i o n a r u n m a r Select a map
MainWindow j S e l e c c i o n a r l a v a r i a b l e a v i s u a l i z a r e n l a s i m u l a c i n -Select a variable to display in the animation
MainWindow : S e l e c c i o n a i d i o m a p a r a l a G U I Select the language for the GUI
MainWindow L S e l e c c i o n a e l t i p o d e t u b a s e d e d a t o s Select your database type
MainWindow A j u s t e s Settings
MainWindow * V i s u a l i z a r S i m u l a c i n Simulation Display
MainWindow . E s t a d o d e l a S i m u l a c i n Simulation Status
MainWindow $ P a s o d e s i m u l a c i n Simulation step
MainWindow , S i m u l a c i n a l m a c e n a d a : Simulations stored:
MainWindow E s p a o l Spanish
MainWindow , A r b o l e s d e p r o p a g a c i n Spread Trees
MainWindow Start animation
MainWindow ` E s t e e s e l U r l d e t u s e r v i d o r d e b a s e s d e d a t o s . (This is the url of your database server.
MainWindow E s t e e s e l I d d e u s u s a r i o p a r a a c c e d e r a l s e r v i d o r d e b a s e s d e d a t o s 4This is the userid for accessing the database server
MainWindow " p a s o s p o r s e g u n d o Time steps per second
MainWindow U s o d e A y u d a
Usage help
MainWindow I d d e u s u a r i o : Userid:
MainWindow U t i l i d a d e s Utilities
MainWindow
V a l o r Value
MainWindow V a r i a b l e Variable
MainWindow , V a r i a b l e a v i s u a l i z a r : Variable to display:
MainWindow
V i s o r Viewer
MainWindow V i s u a l i z a c i n
Visualization
MainWindow l o c a l h o s t localhost
MainWindow E s c r i b e e l n o m b r e d e t u s c r i p t o p r e s i o n a e l b o t n e l e g i r a l a d e r e c h a p a r a s e l e c c i o n a r u n o . Xwrite the name of the your script or press the choose button on the right to select one.
MainWindow & O K &OK MainWindow_Impl
* . e p g *.epg MainWindow_Impl . S o p o r t e d e r a m i f i c a c i n Branch Support MainWindow_Impl x N o s e p u e d e a b r i r e l i n f o r m e . A s e g u r e s e d e h a b e r l o g e n e r a d o . ;Could not open the report.
Make sure you have generated it. MainWindow_Impl A c t u a l m e n t e , l a f u n c i n d e c o p i a d e s g u r i d a d s l o f u n c i o n a e n s e r v i d o r e s l o c a l e s . ]Currently, the database backup function only
works on local database servers. MainWindow_Impl : E d i t o r o s c r i p t n o e n c o n t r a d o Editor or Script not selected MainWindow_Impl T a b l a v a c i a Empty Table MainWindow_Impl r I n t r o d u z c a e l n i v e l m n i m o d e s o p o r t e d e r a m a s a m o s t r a r : .Enter minimum branch support level to display: MainWindow_Impl 0 C o n f i g u r a c i n i n c o m p l e t a Incomplete Configuration MainWindow_Impl J C o n t r a s e a d e B a s e d e d a t o s n o v l i d a Missing Database Password MainWindow_Impl N o h a y i n f o r m e s No Report MainWindow_Impl D S e r v i d o r d e B A s e d e d a t o s n o l o c a l Non-local Database Server MainWindow_Impl P o r f a v o r , c o m p r o b a r e l a r c h i v o . e p i g r a s s r c p o r n o e n c o t r a r s e l a c l a v e % s d e l a s e c c i n % s UPlease check file .epigrassrc for missing %s keyword
from section %s MainWindow_Impl L P o r f a v o r i n t r o d u c i r u n v a l o r p a r a % s . Please enter a value for %s. MainWindow_Impl P o r f a v o r , i n t r o d u z c a l a c o n t r a s e a p a r a l a B a s e d e D a t o s M y S Q L . )Please enter password for MySQL database. MainWindow_Impl P o r f a v o r i n t r o d u z c a l a c o n t r a s e a p a r a l a b a s e d e d a t o s M y S Q L e n e l p r i m e r e s p a c i o . BPlease enter the password for the MySQL database in the first tab. MainWindow_Impl P o r f a v o r , a s e g u r e s e d e h a b e r s e l e c c i o n a d o u n e d i t o r y e l s c r i p t d e l m o d e l o . JPlease make sure you have selected both
an editor and your model's script. MainWindow_Impl < I n s t r u c c i o n e s d e r e s t a u r a c i n : Restore Instructions: MainWindow_Impl S e l e c c i o n e e l d i r e c t o r i o c o n l o s a r c h i v o s d e r b o l ( e p i p a t h * . c s v ) /Select Directory with Tree Files (epipath*.csv) MainWindow_Impl > S e l e c c i o n e s u s c r i p t d e l m o d e l o Select your Model's Script MainWindow_Impl " E r r o r d e S i n t a x i s Syntax Error MainWindow_Impl L a B a s e d e d a t o s d e E p i g r a s s h a s i d o r e s p a l d a d a a u n a r c h i v o d e n o m b r e " e p i g r a s s . s q l " . e s t e a r c h i v o e s e l a c t u a l d i r e c t o r i o d e t r a b a j o . P a r a r e s t a u r a r l a b a s e d e d a t o s e s c r i b e : e p i g r a s s . s q l > m y s q l The epigrass database has been Backed up
to a file named "epigrass.sql".
This file is in you current working directory.
To restore the database type:
epigrass.sql > mysql MainWindow_Impl H a s e l e c c i o n a d o u n a t a b l a v a c i a . P o r f a v o r , s e l e c c i o n e o t r a t a b l a d e l m e n . LYou have selected an empty table.
Please select another table from the menu. MainWindow_Impl 8 G N U G E N E R A L P U B L I C L I C E N S E V e r s i o n 2 , J u n e 1 9 9 1 C o p y r i g h t ( C ) 1 9 8 9 , 1 9 9 1 F r e e S o f t w a r e F o u n d a t i o n , I n c . 5 9 T e m p l e P l a c e , S u i t e 3 3 0 , B o s t o n , M A 0 2 1 1 1 - 1 3 0 7 U S A E v e r y o n e i s p e r m i t t e d t o c o p y a n d d i s t r i b u t e v e r b a t i m c o p i e s o f t h i s l i c e n s e d o c u m e n t , b u t c h a n g i n g i t i s n o t a l l o w e d . P r e a m b l e T h e l i c e n s e s f o r m o s t s o f t w a r e a r e d e s i g n e d t o t a k e a w a y y o u r f r e e d o m t o s h a r e a n d c h a n g e i t . B y c o n t r a s t , t h e G N U G e n e r a l P u b l i c L i c e n s e i s i n t e n d e d t o g u a r a n t e e y o u r f r e e d o m t o s h a r e a n d c h a n g e f r e e s o f t w a r e - - t o m a k e s u r e t h e s o f t w a r e i s f r e e f o r a l l i t s u s e r s . T h i s G e n e r a l P u b l i c L i c e n s e a p p l i e s t o m o s t o f t h e F r e e S o f t w a r e F o u n d a t i o n ' s s o f t w a r e a n d t o a n y o t h e r p r o g r a m w h o s e a u t h o r s c o m m i t t o u s i n g i t . ( S o m e o t h e r F r e e S o f t w a r e F o u n d a t i o n s o f t w a r e i s c o v e r e d b y t h e G N U L i b r a r y G e n e r a l P u b l i c L i c e n s e i n s t e a d . ) Y o u c a n a p p l y i t t o y o u r p r o g r a m s , t o o . W h e n w e s p e a k o f f r e e s o f t w a r e , w e a r e r e f e r r i n g t o f r e e d o m , n o t p r i c e . O u r G e n e r a l P u b l i c L i c e n s e s a r e d e s i g n e d t o m a k e s u r e t h a t y o u h a v e t h e f r e e d o m t o d i s t r i b u t e c o p i e s o f f r e e s o f t w a r e ( a n d c h a r g e f o r t h i s s e r v i c e i f y o u w i s h ) , t h a t y o u r e c e i v e s o u r c e c o d e o r c a n g e t i t i f y o u w a n t i t , t h a t y o u c a n c h a n g e t h e s o f t w a r e o r u s e p i e c e s o f i t i n n e w f r e e p r o g r a m s ; a n d t h a t y o u k n o w y o u c a n d o t h e s e t h i n g s . T o p r o t e c t y o u r r i g h t s , w e n e e d t o m a k e r e s t r i c t i o n s t h a t f o r b i d a n y o n e t o d e n y y o u t h e s e r i g h t s o r t o a s k y o u t o s u r r e n d e r t h e r i g h t s . T h e s e r e s t r i c t i o n s t r a n s l a t e t o c e r t a i n r e s p o n s i b i l i t i e s f o r y o u i f y o u d i s t r i b u t e c o p i e s o f t h e s o f t w a r e , o r i f y o u m o d i f y i t . F o r e x a m p l e , i f y o u d i s t r i b u t e c o p i e s o f s u c h a p r o g r a m , w h e t h e r g r a t i s o r f o r a f e e , y o u m u s t g i v e t h e r e c i p i e n t s a l l t h e r i g h t s t h a t y o u h a v e . Y o u m u s t m a k e s u r e t h a t t h e y , t o o , r e c e i v e o r c a n g e t t h e s o u r c e c o d e . A n d y o u m u s t s h o w t h e m t h e s e t e r m s s o t h e y k n o w t h e i r r i g h t s . W e p r o t e c t y o u r r i g h t s w i t h t w o s t e p s : ( 1 ) c o p y r i g h t t h e s o f t w a r e , a n d ( 2 ) o f f e r y o u t h i s l i c e n s e w h i c h g i v e s y o u l e g a l p e r m i s s i o n t o c o p y , d i s t r i b u t e a n d / o r m o d i f y t h e s o f t w a r e . A l s o , f o r e a c h a u t h o r ' s p r o t e c t i o n a n d o u r s , w e w a n t t o m a k e c e r t a i n t h a t e v e r y o n e u n d e r s t a n d s t h a t t h e r e i s n o w a r r a n t y f o r t h i s f r e e s o f t w a r e . I f t h e s o f t w a r e i s m o d i f i e d b y s o m e o n e e l s e a n d p a s s e d o n , w e w a n t i t s r e c i p i e n t s t o k n o w t h a t w h a t t h e y h a v e i s n o t t h e o r i g i n a l , s o t h a t a n y p r o b l e m s i n t r o d u c e d b y o t h e r s w i l l n o t r e f l e c t o n t h e o r i g i n a l a u t h o r s ' r e p u t a t i o n s . F i n a l l y , a n y f r e e p r o g r a m i s t h r e a t e n e d c o n s t a n t l y b y s o f t w a r e p a t e n t s . W e w i s h t o a v o i d t h e d a n g e r t h a t r e d i s t r i b u t o r s o f a f r e e p r o g r a m w i l l i n d i v i d u a l l y o b t a i n p a t e n t l i c e n s e s , i n e f f e c t m a k i n g t h e p r o g r a m p r o p r i e t a r y . T o p r e v e n t t h i s , w e h a v e m a d e i t c l e a r t h a t a n y p a t e n t m u s t b e l i c e n s e d f o r e v e r y o n e ' s f r e e u s e o r n o t l i c e n s e d a t a l l . T h e p r e c i s e t e r m s a n d c o n d i t i o n s f o r c o p y i n g , d i s t r i b u t i o n a n d m o d i f i c a t i o n f o l l o w . G N U G E N E R A L P U B L I C L I C E N S E T E R M S A N D C O N D I T I O N S F O R C O P Y I N G , D I S T R I B U T I O N A N D M O D I F I C A T I O N 0 . T h i s L i c e n s e a p p l i e s t o a n y p r o g r a m o r o t h e r w o r k w h i c h c o n t a i n s a n o t i c e p l a c e d b y t h e c o p y r i g h t h o l d e r s a y i n g i t m a y b e d i s t r i b u t e d u n d e r t h e t e r m s o f t h i s G e n e r a l P u b l i c L i c e n s e . T h e " P r o g r a m " , b e l o w , r e f e r s t o a n y s u c h p r o g r a m o r w o r k , a n d a " w o r k b a s e d o n t h e P r o g r a m " m e a n s e i t h e r t h e P r o g r a m o r a n y d e r i v a t i v e w o r k u n d e r c o p y r i g h t l a w : t h a t i s t o s a y , a w o r k c o n t a i n i n g t h e P r o g r a m o r a p o r t i o n o f i t , e i t h e r v e r b a t i m o r w i t h m o d i f i c a t i o n s a n d / o r t r a n s l a t e d i n t o a n o t h e r l a n g u a g e . ( H e r e i n a f t e r , t r a n s l a t i o n i s i n c l u d e d w i t h o u t l i m i t a t i o n i n t h e t e r m " m o d i f i c a t i o n " . ) E a c h l i c e n s e e i s a d d r e s s e d a s " y o u " . A c t i v i t i e s o t h e r t h a n c o p y i n g , d i s t r i b u t i o n a n d m o d i f i c a t i o n a r e n o t c o v e r e d b y t h i s L i c e n s e ; t h e y a r e o u t s i d e i t s s c o p e . T h e a c t o f r u n n i n g t h e P r o g r a m i s n o t r e s t r i c t e d , a n d t h e o u t p u t f r o m t h e P r o g r a m i s c o v e r e d o n l y i f i t s c o n t e n t s c o n s t i t u t e a w o r k b a s e d o n t h e P r o g r a m ( i n d e p e n d e n t o f h a v i n g b e e n m a d e b y r u n n i n g t h e P r o g r a m ) . W h e t h e r t h a t i s t r u e d e p e n d s o n w h a t t h e P r o g r a m d o e s . 1 . Y o u m a y c o p y a n d d i s t r i b u t e v e r b a t i m c o p i e s o f t h e P r o g r a m ' s s o u r c e c o d e a s y o u r e c e i v e i t , i n a n y m e d i u m , p r o v i d e d t h a t y o u c o n s p i c u o u s l y a n d a p p r o p r i a t e l y p u b l i s h o n e a c h c o p y a n a p p r o p r i a t e c o p y r i g h t n o t i c e a n d d i s c l a i m e r o f w a r r a n t y ; k e e p i n t a c t a l l t h e n o t i c e s t h a t r e f e r t o t h i s L i c e n s e a n d t o t h e a b s e n c e o f a n y w a r r a n t y ; a n d g i v e a n y o t h e r r e c i p i e n t s o f t h e P r o g r a m a c o p y o f t h i s L i c e n s e a l o n g w i t h t h e P r o g r a m . Y o u m a y c h a r g e a f e e f o r t h e p h y s i c a l a c t o f t r a n s f e r r i n g a c o p y , a n d y o u m a y a t y o u r o p t i o n o f f e r w a r r a n t y p r o t e c t i o n i n e x c h a n g e f o r a f e e . 2 . Y o u m a y m o d i f y y o u r c o p y o r c o p i e s o f t h e P r o g r a m o r a n y p o r t i o n o f i t , t h u s f o r m i n g a w o r k b a s e d o n t h e P r o g r a m , a n d c o p y a n d d i s t r i b u t e s u c h m o d i f i c a t i o n s o r w o r k u n d e r t h e t e r m s o f S e c t i o n 1 a b o v e , p r o v i d e d t h a t y o u a l s o m e e t a l l o f t h e s e c o n d i t i o n s : a ) Y o u m u s t c a u s e t h e m o d i f i e d f i l e s t o c a r r y p r o m i n e n t n o t i c e s s t a t i n g t h a t y o u c h a n g e d t h e f i l e s a n d t h e d a t e o f a n y c h a n g e . b ) Y o u m u s t c a u s e a n y w o r k t h a t y o u d i s t r i b u t e o r p u b l i s h , t h a t i n w h o l e o r i n p a r t c o n t a i n s o r i s d e r i v e d f r o m t h e P r o g r a m o r a n y p a r t t h e r e o f , t o b e l i c e n s e d a s a w h o l e a t n o c h a r g e t o a l l t h i r d p a r t i e s u n d e r t h e t e r m s o f t h i s L i c e n s e . c ) I f t h e m o d i f i e d p r o g r a m n o r m a l l y r e a d s c o m m a n d s i n t e r a c t i v e l y w h e n r u n , y o u m u s t c a u s e i t , w h e n s t a r t e d r u n n i n g f o r s u c h i n t e r a c t i v e u s e i n t h e m o s t o r d i n a r y w a y , t o p r i n t o r d i s p l a y a n a n n o u n c e m e n t i n c l u d i n g a n a p p r o p r i a t e c o p y r i g h t n o t i c e a n d a n o t i c e t h a t t h e r e i s n o w a r r a n t y ( o r e l s e , s a y i n g t h a t y o u p r o v i d e a w a r r a n t y ) a n d t h a t u s e r s m a y r e d i s t r i b u t e t h e p r o g r a m u n d e r t h e s e c o n d i t i o n s , a n d t e l l i n g t h e u s e r h o w t o v i e w a c o p y o f t h i s L i c e n s e . ( E x c e p t i o n : i f t h e P r o g r a m i t s e l f i s i n t e r a c t i v e b u t d o e s n o t n o r m a l l y p r i n t s u c h a n a n n o u n c e m e n t , y o u r w o r k b a s e d o n t h e P r o g r a m i s n o t r e q u i r e d t o p r i n t a n a n n o u n c e m e n t . ) T h e s e r e q u i r e m e n t s a p p l y t o t h e m o d i f i e d w o r k a s a w h o l e . I f i d e n t i f i a b l e s e c t i o n s o f t h a t w o r k a r e n o t d e r i v e d f r o m t h e P r o g r a m , a n d c a n b e r e a s o n a b l y c o n s i d e r e d i n d e p e n d e n t a n d s e p a r a t e w o r k s i n t h e m s e l v e s , t h e n t h i s L i c e n s e , a n d i t s t e r m s , d o n o t a p p l y t o t h o s e s e c t i o n s w h e n y o u d i s t r i b u t e t h e m a s s e p a r a t e w o r k s . B u t w h e n y o u d i s t r i b u t e t h e s a m e s e c t i o n s a s p a r t o f a w h o l e w h i c h i s a w o r k b a s e d o n t h e P r o g r a m , t h e d i s t r i b u t i o n o f t h e w h o l e m u s t b e o n t h e t e r m s o f t h i s L i c e n s e , w h o s e p e r m i s s i o n s f o r o t h e r l i c e n s e e s e x t e n d t o t h e e n t i r e w h o l e , a n d t h u s t o e a c h a n d e v e r y p a r t r e g a r d l e s s o f w h o w r o t e i t . T h u s , i t i s n o t t h e i n t e n t o f t h i s s e c t i o n t o c l a i m r i g h t s o r c o n t e s t y o u r r i g h t s t o w o r k w r i t t e n e n t i r e l y b y y o u ; r a t h e r , t h e i n t e n t i s t o e x e r c i s e t h e r i g h t t o c o n t r o l t h e d i s t r i b u t i o n o f d e r i v a t i v e o r c o l l e c t i v e w o r k s b a s e d o n t h e P r o g r a m . I n a d d i t i o n , m e r e a g g r e g a t i o n o f a n o t h e r w o r k n o t b a s e d o n t h e P r o g r a m w i t h t h e P r o g r a m ( o r w i t h a w o r k b a s e d o n t h e P r o g r a m ) o n a v o l u m e o f a s t o r a g e o r d i s t r i b u t i o n m e d i u m d o e s n o t b r i n g t h e o t h e r w o r k u n d e r t h e s c o p e o f t h i s L i c e n s e . 3 . Y o u m a y c o p y a n d d i s t r i b u t e t h e P r o g r a m ( o r a w o r k b a s e d o n i t , u n d e r S e c t i o n 2 ) i n o b j e c t c o d e o r e x e c u t a b l e f o r m u n d e r t h e t e r m s o f S e c t i o n s 1 a n d 2 a b o v e p r o v i d e d t h a t y o u a l s o d o o n e o f t h e f o l l o w i n g : a ) A c c o m p a n y i t w i t h t h e c o m p l e t e c o r r e s p o n d i n g m a c h i n e - r e a d a b l e s o u r c e c o d e , w h i c h m u s t b e d i s t r i b u t e d u n d e r t h e t e r m s o f S e c t i o n s 1 a n d 2 a b o v e o n a m e d i u m c u s t o m a r i l y u s e d f o r s o f t w a r e i n t e r c h a n g e ; o r , b ) A c c o m p a n y i t w i t h a w r i t t e n o f f e r , v a l i d f o r a t l e a s t t h r e e y e a r s , t o g i v e a n y t h i r d p a r t y , f o r a c h a r g e n o m o r e t h a n y o u r c o s t o f p h y s i c a l l y p e r f o r m i n g s o u r c e d i s t r i b u t i o n , a c o m p l e t e m a c h i n e - r e a d a b l e c o p y o f t h e c o r r e s p o n d i n g s o u r c e c o d e , t o b e d i s t r i b u t e d u n d e r t h e t e r m s o f S e c t i o n s 1 a n d 2 a b o v e o n a m e d i u m c u s t o m a r i l y u s e d f o r s o f t w a r e i n t e r c h a n g e ; o r , c ) A c c o m p a n y i t w i t h t h e i n f o r m a t i o n y o u r e c e i v e d a s t o t h e o f f e r t o d i s t r i b u t e c o r r e s p o n d i n g s o u r c e c o d e . ( T h i s a l t e r n a t i v e i s a l l o w e d o n l y f o r n o n c o m m e r c i a l d i s t r i b u t i o n a n d o n l y i f y o u r e c e i v e d t h e p r o g r a m i n o b j e c t c o d e o r e x e c u t a b l e f o r m w i t h s u c h a n o f f e r , i n a c c o r d w i t h S u b s e c t i o n b a b o v e . ) T h e s o u r c e c o d e f o r a w o r k m e a n s t h e p r e f e r r e d f o r m o f t h e w o r k f o r m a k i n g m o d i f i c a t i o n s t o i t . F o r a n e x e c u t a b l e w o r k , c o m p l e t e s o u r c e c o d e m e a n s a l l t h e s o u r c e c o d e f o r a l l m o d u l e s i t c o n t a i n s , p l u s a n y a s s o c i a t e d i n t e r f a c e d e f i n i t i o n f i l e s , p l u s t h e s c r i p t s u s e d t o c o n t r o l c o m p i l a t i o n a n d i n s t a l l a t i o n o f t h e e x e c u t a b l e . H o w e v e r , a s a s p e c i a l e x c e p t i o n , t h e s o u r c e c o d e d i s t r i b u t e d n e e d n o t i n c l u d e a n y t h i n g t h a t i s n o r m a l l y d i s t r i b u t e d ( i n e i t h e r s o u r c e o r b i n a r y f o r m ) w i t h t h e m a j o r c o m p o n e n t s ( c o m p i l e r , k e r n e l , a n d s o o n ) o f t h e o p e r a t i n g s y s t e m o n w h i c h t h e e x e c u t a b l e r u n s , u n l e s s t h a t c o m p o n e n t i t s e l f a c c o m p a n i e s t h e e x e c u t a b l e . I f d i s t r i b u t i o n o f e x e c u t a b l e o r o b j e c t c o d e i s m a d e b y o f f e r i n g a c c e s s t o c o p y f r o m a d e s i g n a t e d p l a c e , t h e n o f f e r i n g e q u i v a l e n t a c c e s s t o c o p y t h e s o u r c e c o d e f r o m t h e s a m e p l a c e c o u n t s a s d i s t r i b u t i o n o f t h e s o u r c e c o d e , e v e n t h o u g h t h i r d p a r t i e s a r e n o t c o m p e l l e d t o c o p y t h e s o u r c e a l o n g w i t h t h e o b j e c t c o d e . 4 . Y o u m a y n o t c o p y , m o d i f y , s u b l i c e n s e , o r d i s t r i b u t e t h e P r o g r a m e x c e p t a s e x p r e s s l y p r o v i d e d u n d e r t h i s L i c e n s e . A n y a t t e m p t o t h e r w i s e t o c o p y , m o d i f y , s u b l i c e n s e o r d i s t r i b u t e t h e P r o g r a m i s v o i d , a n d w i l l a u t o m a t i c a l l y t e r m i n a t e y o u r r i g h t s u n d e r t h i s L i c e n s e . H o w e v e r , p a r t i e s w h o h a v e r e c e i v e d c o p i e s , o r r i g h t s , f r o m y o u u n d e r t h i s L i c e n s e w i l l n o t h a v e t h e i r l i c e n s e s t e r m i n a t e d s o l o n g a s s u c h p a r t i e s r e m a i n i n f u l l c o m p l i a n c e . 5 . Y o u a r e n o t r e q u i r e d t o a c c e p t t h i s L i c e n s e , s i n c e y o u h a v e n o t s i g n e d i t . H o w e v e r , n o t h i n g e l s e g r a n t s y o u p e r m i s s i o n t o m o d i f y o r d i s t r i b u t e t h e P r o g r a m o r i t s d e r i v a t i v e w o r k s . T h e s e a c t i o n s a r e p r o h i b i t e d b y l a w i f y o u d o n o t a c c e p t t h i s L i c e n s e . T h e r e f o r e , b y m o d i f y i n g o r d i s t r i b u t i n g t h e P r o g r a m ( o r a n y w o r k b a s e d o n t h e P r o g r a m ) , y o u i n d i c a t e y o u r a c c e p t a n c e o f t h i s L i c e n s e t o d o s o , a n d a l l i t s t e r m s a n d c o n d i t i o n s f o r c o p y i n g , d i s t r i b u t i n g o r m o d i f y i n g t h e P r o g r a m o r w o r k s b a s e d o n i t . 6 . E a c h t i m e y o u r e d i s t r i b u t e t h e P r o g r a m ( o r a n y w o r k b a s e d o n t h e P r o g r a m ) , t h e r e c i p i e n t a u t o m a t i c a l l y r e c e i v e s a l i c e n s e f r o m t h e o r i g i n a l l i c e n s o r t o c o p y , d i s t r i b u t e o r m o d i f y t h e P r o g r a m s u b j e c t t o t h e s e t e r m s a n d c o n d i t i o n s . Y o u m a y n o t i m p o s e a n y f u r t h e r r e s t r i c t i o n s o n t h e r e c i p i e n t s ' e x e r c i s e o f t h e r i g h t s g r a n t e d h e r e i n . Y o u a r e n o t r e s p o n s i b l e f o r e n f o r c i n g c o m p l i a n c e b y t h i r d p a r t i e s t o t h i s L i c e n s e . 7 . I f , a s a c o n s e q u e n c e o f a c o u r t j u d g m e n t o r a l l e g a t i o n o f p a t e n t i n f r i n g e m e n t o r f o r a n y o t h e r r e a s o n ( n o t l i m i t e d t o p a t e n t i s s u e s ) , c o n d i t i o n s a r e i m p o s e d o n y o u ( w h e t h e r b y c o u r t o r d e r , a g r e e m e n t o r o t h e r w i s e ) t h a t c o n t r a d i c t t h e c o n d i t i o n s o f t h i s L i c e n s e , t h e y d o n o t e x c u s e y o u f r o m t h e c o n d i t i o n s o f t h i s L i c e n s e . I f y o u c a n n o t d i s t r i b u t e s o a s t o s a t i s f y s i m u l t a n e o u s l y y o u r o b l i g a t i o n s u n d e r t h i s L i c e n s e a n d a n y o t h e r p e r t i n e n t o b l i g a t i o n s , t h e n a s a c o n s e q u e n c e y o u m a y n o t d i s t r i b u t e t h e P r o g r a m a t a l l . F o r e x a m p l e , i f a p a t e n t l i c e n s e w o u l d n o t p e r m i t r o y a l t y - f r e e r e d i s t r i b u t i o n o f t h e P r o g r a m b y a l l t h o s e w h o r e c e i v e c o p i e s d i r e c t l y o r i n d i r e c t l y t h r o u g h y o u , t h e n t h e o n l y w a y y o u c o u l d s a t i s f y b o t h i t a n d t h i s L i c e n s e w o u l d b e t o r e f r a i n e n t i r e l y f r o m d i s t r i b u t i o n o f t h e P r o g r a m . I f a n y p o r t i o n o f t h i s s e c t i o n i s h e l d i n v a l i d o r u n e n f o r c e a b l e u n d e r a n y p a r t i c u l a r c i r c u m s t a n c e , t h e b a l a n c e o f t h e s e c t i o n i s i n t e n d e d t o a p p l y a n d t h e s e c t i o n a s a w h o l e i s i n t e n d e d t o a p p l y i n o t h e r c i r c u m s t a n c e s . I t i s n o t t h e p u r p o s e o f t h i s s e c t i o n t o i n d u c e y o u t o i n f r i n g e a n y p a t e n t s o r o t h e r p r o p e r t y r i g h t c l a i m s o r t o c o n t e s t v a l i d i t y o f a n y s u c h c l a i m s ; t h i s s e c t i o n h a s t h e s o l e p u r p o s e o f p r o t e c t i n g t h e i n t e g r i t y o f t h e f r e e s o f t w a r e d i s t r i b u t i o n s y s t e m , w h i c h i s i m p l e m e n t e d b y p u b l i c l i c e n s e p r a c t i c e s . M a n y p e o p l e h a v e m a d e g e n e r o u s c o n t r i b u t i o n s t o t h e w i d e r a n g e o f s o f t w a r e d i s t r i b u t e d t h r o u g h t h a t s y s t e m i n r e l i a n c e o n c o n s i s t e n t a p p l i c a t i o n o f t h a t s y s t e m ; i t i s u p t o t h e a u t h o r / d o n o r t o d e c i d e i f h e o r s h e i s w i l l i n g t o d i s t r i b u t e s o f t w a r e t h r o u g h a n y o t h e r s y s t e m a n d a l i c e n s e e c a n n o t i m p o s e t h a t c h o i c e . T h i s s e c t i o n i s i n t e n d e d t o m a k e t h o r o u g h l y c l e a r w h a t i s b e l i e v e d t o b e a c o n s e q u e n c e o f t h e r e s t o f t h i s L i c e n s e . 8 . I f t h e d i s t r i b u t i o n a n d / o r u s e o f t h e P r o g r a m i s r e s t r i c t e d i n c e r t a i n c o u n t r i e s e i t h e r b y p a t e n t s o r b y c o p y r i g h t e d i n t e r f a c e s , t h e o r i g i n a l c o p y r i g h t h o l d e r w h o p l a c e s t h e P r o g r a m u n d e r t h i s L i c e n s e m a y a d d a n e x p l i c i t g e o g r a p h i c a l d i s t r i b u t i o n l i m i t a t i o n e x c l u d i n g t h o s e c o u n t r i e s , s o t h a t d i s t r i b u t i o n i s p e r m i t t e d o n l y i n o r a m o n g c o u n t r i e s n o t t h u s e x c l u d e d . I n s u c h c a s e , t h i s L i c e n s e i n c o r p o r a t e s t h e l i m i t a t i o n a s i f w r i t t e n i n t h e b o d y o f t h i s L i c e n s e . 9 . T h e F r e e S o f t w a r e F o u n d a t i o n m a y p u b l i s h r e v i s e d a n d / o r n e w v e r s i o n s o f t h e G e n e r a l P u b l i c L i c e n s e f r o m t i m e t o t i m e . S u c h n e w v e r s i o n s w i l l b e s i m i l a r i n s p i r i t t o t h e p r e s e n t v e r s i o n , b u t m a y d i f f e r i n d e t a i l t o a d d r e s s n e w p r o b l e m s o r c o n c e r n s . E a c h v e r s i o n i s g i v e n a d i s t i n g u i s h i n g v e r s i o n n u m b e r . I f t h e P r o g r a m s p e c i f i e s a v e r s i o n n u m b e r o f t h i s L i c e n s e w h i c h a p p l i e s t o i t a n d " a n y l a t e r v e r s i o n " , y o u h a v e t h e o p t i o n o f f o l l o w i n g t h e t e r m s a n d c o n d i t i o n s e i t h e r o f t h a t v e r s i o n o r o f a n y l a t e r v e r s i o n p u b l i s h e d b y t h e F r e e S o f t w a r e F o u n d a t i o n . I f t h e P r o g r a m d o e s n o t s p e c i f y a v e r s i o n n u m b e r o f t h i s L i c e n s e , y o u m a y c h o o s e a n y v e r s i o n e v e r p u b l i s h e d b y t h e F r e e S o f t w a r e F o u n d a t i o n . 1 0 . I f y o u w i s h t o i n c o r p o r a t e p a r t s o f t h e P r o g r a m i n t o o t h e r f r e e p r o g r a m s w h o s e d i s t r i b u t i o n c o n d i t i o n s a r e d i f f e r e n t , w r i t e t o t h e a u t h o r t o a s k f o r p e r m i s s i o n . F o r s o f t w a r e w h i c h i s c o p y r i g h t e d b y t h e F r e e S o f t w a r e F o u n d a t i o n , w r i t e t o t h e F r e e S o f t w a r e F o u n d a t i o n ; w e s o m e t i m e s m a k e e x c e p t i o n s f o r t h i s . O u r d e c i s i o n w i l l b e g u i d e d b y t h e t w o g o a l s o f p r e s e r v i n g t h e f r e e s t a t u s o f a l l d e r i v a t i v e s o f o u r f r e e s o f t w a r e a n d o f p r o m o t i n g t h e s h a r i n g a n d r e u s e o f s o f t w a r e g e n e r a l l y . N O W A R R A N T Y 1 1 . B E C A U S E T H E P R O G R A M I S L I C E N S E D F R E E O F C H A R G E , T H E R E I S N O W A R R A N T Y F O R T H E P R O G R A M , T O T H E E X T E N T P E R M I T T E D B Y A P P L I C A B L E L A W . E X C E P T W H E N O T H E R W I S E S T A T E D I N W R I T I N G T H E C O P Y R I G H T H O L D E R S A N D / O R O T H E R P A R T I E S P R O V I D E T H E P R O G R A M " A S I S " W I T H O U T W A R R A N T Y O F A N Y K I N D , E I T H E R E X P R E S S E D O R I M P L I E D , I N C L U D I N G , B U T N O T L I M I T E D T O , T H E I M P L I E D W A R R A N T I E S O F M E R C H A N T A B I L I T Y A N D F I T N E S S F O R A P A R T I C U L A R P U R P O S E . T H E E N T I R E R I S K A S T O T H E Q U A L I T Y A N D P E R F O R M A N C E O F T H E P R O G R A M I S W I T H Y O U . S H O U L D T H E P R O G R A M P R O V E D E F E C T I V E , Y O U A S S U M E T H E C O S T O F A L L N E C E S S A R Y S E R V I C I N G , R E P A I R O R C O R R E C T I O N . 1 2 . I N N O E V E N T U N L E S S R E Q U I R E D B Y A P P L I C A B L E L A W O R A G R E E D T O I N W R I T I N G W I L L A N Y C O P Y R I G H T H O L D E R , O R A N Y O T H E R P A R T Y W H O M A Y M O D I F Y A N D / O R R E D I S T R I B U T E T H E P R O G R A M A S P E R M I T T E D A B O V E , B E L I A B L E T O Y O U F O R D A M A G E S , I N C L U D I N G A N Y G E N E R A L , S P E C I A L , I N C I D E N T A L O R C O N S E Q U E N T I A L D A M A G E S A R I S I N G O U T O F T H E U S E O R I N A B I L I T Y T O U S E T H E P R O G R A M ( I N C L U D I N G B U T N O T L I M I T E D T O L O S S O F D A T A O R D A T A B E I N G R E N D E R E D I N A C C U R A T E O R L O S S E S S U S T A I N E D B Y Y O U O R T H I R D P A R T I E S O R A F A I L U R E O F T H E P R O G R A M T O O P E R A T E W I T H A N Y O T H E R P R O G R A M S ) , E V E N I F S U C H H O L D E R O R O T H E R P A R T Y H A S B E E N A D V I S E D O F T H E P O S S I B I L I T Y O F S U C H D A M A G E S . E N D O F T E R M S A N D C O N D I T I O N S H o w t o A p p l y T h e s e T e r m s t o Y o u r N e w P r o g r a m s I f y o u d e v e l o p a n e w p r o g r a m , a n d y o u w a n t i t t o b e o f t h e g r e a t e s t p o s s i b l e u s e t o t h e p u b l i c , t h e b e s t w a y t o a c h i e v e t h i s i s t o m a k e i t f r e e s o f t w a r e w h i c h e v e r y o n e c a n r e d i s t r i b u t e a n d c h a n g e u n d e r t h e s e t e r m s . T o d o s o , a t t a c h t h e f o l l o w i n g n o t i c e s t o t h e p r o g r a m . I t i s s a f e s t t o a t t a c h t h e m t o t h e s t a r t o f e a c h s o u r c e f i l e t o m o s t e f f e c t i v e l y c o n v e y t h e e x c l u s i o n o f w a r r a n t y ; a n d e a c h f i l e s h o u l d h a v e a t l e a s t t h e " c o p y r i g h t " l i n e a n d a p o i n t e r t o w h e r e t h e f u l l n o t i c e i s f o u n d . < o n e l i n e t o g i v e t h e p r o g r a m ' s n a m e a n d a b r i e f i d e a o f w h a t i t d o e s . > C o p y r i g h t ( C ) < y e a r > < n a m e o f a u t h o r > T h i s p r o g r a m i s f r e e s o f t w a r e ; y o u c a n r e d i s t r i b u t e i t a n d / o r m o d i f y i t u n d e r t h e t e r m s o f t h e G N U G e n e r a l P u b l i c L i c e n s e a s p u b l i s h e d b y t h e F r e e S o f t w a r e F o u n d a t i o n ; e i t h e r v e r s i o n 2 o f t h e L i c e n s e , o r ( a t y o u r o p t i o n ) a n y l a t e r v e r s i o n . T h i s p r o g r a m i s d i s t r i b u t e d i n t h e h o p e t h a t i t w i l l b e u s e f u l , b u t W I T H O U T A N Y W A R R A N T Y ; w i t h o u t e v e n t h e i m p l i e d w a r r a n t y o f M E R C H A N T A B I L I T Y o r F I T N E S S F O R A P A R T I C U L A R P U R P O S E . S e e t h e G N U G e n e r a l P u b l i c L i c e n s e f o r m o r e d e t a i l s . Y o u s h o u l d h a v e r e c e i v e d a c o p y o f t h e G N U G e n e r a l P u b l i c L i c e n s e a l o n g w i t h t h i s p r o g r a m ; i f n o t , w r i t e t o t h e F r e e S o f t w a r e F o u n d a t i o n , I n c . , 5 9 T e m p l e P l a c e , S u i t e 3 3 0 , B o s t o n , M A 0 2 1 1 1 - 1 3 0 7 U S A A l s o a d d i n f o r m a t i o n o n h o w t o c o n t a c t y o u b y e l e c t r o n i c a n d p a p e r m a i l . I f t h e p r o g r a m i s i n t e r a c t i v e , m a k e i t o u t p u t a s h o r t n o t i c e l i k e t h i s w h e n i t s t a r t s i n a n i n t e r a c t i v e m o d e : G n o m o v i s i o n v e r s i o n 6 9 , C o p y r i g h t ( C ) y e a r n a m e o f a u t h o r G n o m o v i s i o n c o m e s w i t h A B S O L U T E L Y N O W A R R A N T Y ; f o r d e t a i l s t y p e ` s h o w w ' . T h i s i s f r e e s o f t w a r e , a n d y o u a r e w e l c o m e t o r e d i s t r i b u t e i t u n d e r c e r t a i n c o n d i t i o n s ; t y p e ` s h o w c ' f o r d e t a i l s . T h e h y p o t h e t i c a l c o m m a n d s ` s h o w w ' a n d ` s h o w c ' s h o u l d s h o w t h e a p p r o p r i a t e p a r t s o f t h e G e n e r a l P u b l i c L i c e n s e . O f c o u r s e , t h e c o m m a n d s y o u u s e m a y b e c a l l e d s o m e t h i n g o t h e r t h a n ` s h o w w ' a n d ` s h o w c ' ; t h e y c o u l d e v e n b e m o u s e - c l i c k s o r m e n u i t e m s - - w h a t e v e r s u i t s y o u r p r o g r a m . Y o u s h o u l d a l s o g e t y o u r e m p l o y e r ( i f y o u w o r k a s a p r o g r a m m e r ) o r y o u r s c h o o l , i f a n y , t o s i g n a " c o p y r i g h t d i s c l a i m e r " f o r t h e p r o g r a m , i f n e c e s s a r y . H e r e i s a s a m p l e ; a l t e r t h e n a m e s : Y o y o d y n e , I n c . , h e r e b y d i s c l a i m s a l l c o p y r i g h t i n t e r e s t i n t h e p r o g r a m ` G n o m o v i s i o n ' ( w h i c h m a k e s p a s s e s a t c o m p i l e r s ) w r i t t e n b y J a m e s H a c k e r . < s i g n a t u r e o f T y C o o n > , 1 A p r i l 1 9 8 9 T y C o o n , P r e s i d e n t o f V i c e T h i s G e n e r a l P u b l i c L i c e n s e d o e s n o t p e r m i t i n c o r p o r a t i n g y o u r p r o g r a m i n t o p r o p r i e t a r y p r o g r a m s . I f y o u r p r o g r a m i s a s u b r o u t i n e l i b r a r y , y o u m a y c o n s i d e r i t m o r e u s e f u l t o p e r m i t l i n k i n g p r o p r i e t a r y a p p l i c a t i o n s w i t h t h e l i b r a r y . I f t h i s i s w h a t y o u w a n t t o d o , u s e t h e G N U L i b r a r y G e n e r a l P u b l i c L i c e n s e i n s t e a d o f t h i s L i c e n s e . Fx GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
The licenses for most software are designed to take away your
freedom to share and change it. By contrast, the GNU General Public
License is intended to guarantee your freedom to share and change free
software--to make sure the software is free for all its users. This
General Public License applies to most of the Free Software
Foundation's software and to any other program whose authors commit to
using it. (Some other Free Software Foundation software is covered by
the GNU Library General Public License instead.) You can apply it to
your programs, too.
When we speak of free software, we are referring to freedom, not
price. Our General Public Licenses are designed to make sure that you
have the freedom to distribute copies of free software (and charge for
this service if you wish), that you receive source code or can get it
if you want it, that you can change the software or use pieces of it
in new free programs; and that you know you can do these things.
To protect your rights, we need to make restrictions that forbid
anyone to deny you these rights or to ask you to surrender the rights.
These restrictions translate to certain responsibilities for you if you
distribute copies of the software, or if you modify it.
For example, if you distribute copies of such a program, whether
gratis or for a fee, you must give the recipients all the rights that
you have. You must make sure that they, too, receive or can get the
source code. And you must show them these terms so they know their
rights.
We protect your rights with two steps: (1) copyright the software, and
(2) offer you this license which gives you legal permission to copy,
distribute and/or modify the software.
Also, for each author's protection and ours, we want to make certain
that everyone understands that there is no warranty for this free
software. If the software is modified by someone else and passed on, we
want its recipients to know that what they have is not the original, so
that any problems introduced by others will not reflect on the original
authors' reputations.
Finally, any free program is threatened constantly by software
patents. We wish to avoid the danger that redistributors of a free
program will individually obtain patent licenses, in effect making the
program proprietary. To prevent this, we have made it clear that any
patent must be licensed for everyone's free use or not licensed at all.
The precise terms and conditions for copying, distribution and
modification follow.
GNU GENERAL PUBLIC LICENSE
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
0. This License applies to any program or other work which contains
a notice placed by the copyright holder saying it may be distributed
under the terms of this General Public License. The "Program", below,
refers to any such program or work, and a "work based on the Program"
means either the Program or any derivative work under copyright law:
that is to say, a work containing the Program or a portion of it,
either verbatim or with modifications and/or translated into another
language. (Hereinafter, translation is included without limitation in
the term "modification".) Each licensee is addressed as "you".
Activities other than copying, distribution and modification are not
covered by this License; they are outside its scope. The act of
running the Program is not restricted, and the output from the Program
is covered only if its contents constitute a work based on the
Program (independent of having been made by running the Program).
Whether that is true depends on what the Program does.
1. You may copy and distribute verbatim copies of the Program's
source code as you receive it, in any medium, provided that you
conspicuously and appropriately publish on each copy an appropriate
copyright notice and disclaimer of warranty; keep intact all the
notices that refer to this License and to the absence of any warranty;
and give any other recipients of the Program a copy of this License
along with the Program.
You may charge a fee for the physical act of transferring a copy, and
you may at your option offer warranty protection in exchange for a fee.
2. You may modify your copy or copies of the Program or any portion
of it, thus forming a work based on the Program, and copy and
distribute such modifications or work under the terms of Section 1
above, provided that you also meet all of these conditions:
a) You must cause the modified files to carry prominent notices
stating that you changed the files and the date of any change.
b) You must cause any work that you distribute or publish, that in
whole or in part contains or is derived from the Program or any
part thereof, to be licensed as a whole at no charge to all third
parties under the terms of this License.
c) If the modified program normally reads commands interactively
when run, you must cause it, when started running for such
interactive use in the most ordinary way, to print or display an
announcement including an appropriate copyright notice and a
notice that there is no warranty (or else, saying that you provide
a warranty) and that users may redistribute the program under
these conditions, and telling the user how to view a copy of this
License. (Exception: if the Program itself is interactive but
does not normally print such an announcement, your work based on
the Program is not required to print an announcement.)
These requirements apply to the modified work as a whole. If
identifiable sections of that work are not derived from the Program,
and can be reasonably considered independent and separate works in
themselves, then this License, and its terms, do not apply to those
sections when you distribute them as separate works. But when you
distribute the same sections as part of a whole which is a work based
on the Program, the distribution of the whole must be on the terms of
this License, whose permissions for other licensees extend to the
entire whole, and thus to each and every part regardless of who wrote it.
Thus, it is not the intent of this section to claim rights or contest
your rights to work written entirely by you; rather, the intent is to
exercise the right to control the distribution of derivative or
collective works based on the Program.
In addition, mere aggregation of another work not based on the Program
with the Program (or with a work based on the Program) on a volume of
a storage or distribution medium does not bring the other work under
the scope of this License.
3. You may copy and distribute the Program (or a work based on it,
under Section 2) in object code or executable form under the terms of
Sections 1 and 2 above provided that you also do one of the following:
a) Accompany it with the complete corresponding machine-readable
source code, which must be distributed under the terms of Sections
1 and 2 above on a medium customarily used for software interchange; or,
b) Accompany it with a written offer, valid for at least three
years, to give any third party, for a charge no more than your
cost of physically performing source distribution, a complete
machine-readable copy of the corresponding source code, to be
distributed under the terms of Sections 1 and 2 above on a medium
customarily used for software interchange; or,
c) Accompany it with the information you received as to the offer
to distribute corresponding source code. (This alternative is
allowed only for noncommercial distribution and only if you
received the program in object code or executable form with such
an offer, in accord with Subsection b above.)
The source code for a work means the preferred form of the work for
making modifications to it. For an executable work, complete source
code means all the source code for all modules it contains, plus any
associated interface definition files, plus the scripts used to
control compilation and installation of the executable. However, as a
special exception, the source code distributed need not include
anything that is normally distributed (in either source or binary
form) with the major components (compiler, kernel, and so on) of the
operating system on which the executable runs, unless that component
itself accompanies the executable.
If distribution of executable or object code is made by offering
access to copy from a designated place, then offering equivalent
access to copy the source code from the same place counts as
distribution of the source code, even though third parties are not
compelled to copy the source along with the object code.
4. You may not copy, modify, sublicense, or distribute the Program
except as expressly provided under this License. Any attempt
otherwise to copy, modify, sublicense or distribute the Program is
void, and will automatically terminate your rights under this License.
However, parties who have received copies, or rights, from you under
this License will not have their licenses terminated so long as such
parties remain in full compliance.
5. You are not required to accept this License, since you have not
signed it. However, nothing else grants you permission to modify or
distribute the Program or its derivative works. These actions are
prohibited by law if you do not accept this License. Therefore, by
modifying or distributing the Program (or any work based on the
Program), you indicate your acceptance of this License to do so, and
all its terms and conditions for copying, distributing or modifying
the Program or works based on it.
6. Each time you redistribute the Program (or any work based on the
Program), the recipient automatically receives a license from the
original licensor to copy, distribute or modify the Program subject to
these terms and conditions. You may not impose any further
restrictions on the recipients' exercise of the rights granted herein.
You are not responsible for enforcing compliance by third parties to
this License.
7. If, as a consequence of a court judgment or allegation of patent
infringement or for any other reason (not limited to patent issues),
conditions are imposed on you (whether by court order, agreement or
otherwise) that contradict the conditions of this License, they do not
excuse you from the conditions of this License. If you cannot
distribute so as to satisfy simultaneously your obligations under this
License and any other pertinent obligations, then as a consequence you
may not distribute the Program at all. For example, if a patent
license would not permit royalty-free redistribution of the Program by
all those who receive copies directly or indirectly through you, then
the only way you could satisfy both it and this License would be to
refrain entirely from distribution of the Program.
If any portion of this section is held invalid or unenforceable under
any particular circumstance, the balance of the section is intended to
apply and the section as a whole is intended to apply in other
circumstances.
It is not the purpose of this section to induce you to infringe any
patents or other property right claims or to contest validity of any
such claims; this section has the sole purpose of protecting the
integrity of the free software distribution system, which is
implemented by public license practices. Many people have made
generous contributions to the wide range of software distributed
through that system in reliance on consistent application of that
system; it is up to the author/donor to decide if he or she is willing
to distribute software through any other system and a licensee cannot
impose that choice.
This section is intended to make thoroughly clear what is believed to
be a consequence of the rest of this License.
8. If the distribution and/or use of the Program is restricted in
certain countries either by patents or by copyrighted interfaces, the
original copyright holder who places the Program under this License
may add an explicit geographical distribution limitation excluding
those countries, so that distribution is permitted only in or among
countries not thus excluded. In such case, this License incorporates
the limitation as if written in the body of this License.
9. The Free Software Foundation may publish revised and/or new versions
of the General Public License from time to time. Such new versions will
be similar in spirit to the present version, but may differ in detail to
address new problems or concerns.
Each version is given a distinguishing version number. If the Program
specifies a version number of this License which applies to it and "any
later version", you have the option of following the terms and conditions
either of that version or of any later version published by the Free
Software Foundation. If the Program does not specify a version number of
this License, you may choose any version ever published by the Free Software
Foundation.
10. If you wish to incorporate parts of the Program into other free
programs whose distribution conditions are different, write to the author
to ask for permission. For software which is copyrighted by the Free
Software Foundation, write to the Free Software Foundation; we sometimes
make exceptions for this. Our decision will be guided by the two goals
of preserving the free status of all derivatives of our free software and
of promoting the sharing and reuse of software generally.
NO WARRANTY
11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
REPAIR OR CORRECTION.
12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
Copyright (C)
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) year name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.
aboutDialog & C e r r a r &Close aboutDialog
This is Epigrass version 2.0a1 website
aboutDialog E
GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License.
aboutDialog
Translations:
French:
Yann Chemin
Spanish:
Naco Serrano
aboutDialog
Developers:
Flávio Codeço Coelho
aboutDialog < b > E p i g r a s s < / b > : < b > E P I < / b > d e m i o l o g i c a l < b > G < / b > e o - < b > R < / b > e f e r e n c e d < b > A < / b > n a l y s i s a n d < b > S < / b > i m u l a t i o n < b > S < / b > y s t e m |Epigrass :
EPI demiological
G eo-R eferenced
A nalysis and
S imulation
S ystem aboutDialog < h 1 > D e s a r r o l l a d o r e s : < / h 1 > F l & a a c u t e ; v i o C o d e & c c e d i l ; o C o e l h o < b r > C l & a a c u t e ; u d i a T o r r e s C o d e & c c e d i l ; o `Developers:
Flávio Codeço CoelhoTranslations:
French:
Yann Chemin
aboutDialog
8 < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > E p i g r a s s < / s p a n > : < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > E P I < / s p a n > d e m i o l o g i c a l < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > G < / s p a n > e o - < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > R < / s p a n > e f e r e n c e d < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > A < / s p a n > n a l y s i s a n d < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > S < / s p a n > i m u l a t i o n < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > S < / s p a n > y s t e m < / p > < / b o d y > < / h t m l > $Epigrass :
EPI demiological
G eo-R eferenced
A nalysis and
S imulation
S ystem
aboutDialog < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > T h i s i s E p i g r a s s v e r s i o n 1 . 5 . 0 < b r / > < b r / > M o r e i n f o r m a t i o n a b o u t E p i g r a s s c a n b e f o u n d a t t h e e p i g r a s s < / s p a n > < a h r e f = " h t t p : / / e p i g r a s s . s o u r c e f o r g e . n e t " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; t e x t - d e c o r a t i o n : u n d e r l i n e ; c o l o r : # 0 0 0 0 f f ; " > w e b s i t e < / s p a n > < / a > < / p > < / b o d y > < / h t m l > uThis is Epigrass version 1.5.0 website
aboutDialog $ < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > G N U G E N E R A L P U B L I C L I C E N S E V e r s i o n 2 , J u n e 1 9 9 1 C o p y r i g h t ( C ) 1 9 8 9 , 1 9 9 1 F r e e S o f t w a r e F o u n d a t i o n , I n c . 5 9 T e m p l e P l a c e , S u i t e 3 3 0 , B o s t o n , M A 0 2 1 1 1 - 1 3 0 7 U S A E v e r y o n e i s p e r m i t t e d t o c o p y a n d d i s t r i b u t e v e r b a t i m c o p i e s o f t h i s l i c e n s e d o c u m e n t , b u t c h a n g i n g i t i s n o t a l l o w e d . P r e a m b l e T h e l i c e n s e s f o r m o s t s o f t w a r e a r e d e s i g n e d t o t a k e a w a y y o u r f r e e d o m t o s h a r e a n d c h a n g e i t . B y c o n t r a s t , t h e G N U G e n e r a l P u b l i c L i c e n s e i s i n t e n d e d t o g u a r a n t e e y o u r f r e e d o m t o s h a r e a n d c h a n g e f r e e s o f t w a r e - - t o m a k e s u r e t h e s o f t w a r e i s f r e e f o r a l l i t s u s e r s . T h i s G e n e r a l P u b l i c L i c e n s e a p p l i e s t o m o s t o f t h e F r e e S o f t w a r e F o u n d a t i o n ' s s o f t w a r e a n d t o a n y o t h e r p r o g r a m w h o s e a u t h o r s c o m m i t t o u s i n g i t . ( S o m e o t h e r F r e e S o f t w a r e F o u n d a t i o n s o f t w a r e i s c o v e r e d b y t h e G N U L i b r a r y G e n e r a l P u b l i c L i c e n s e i n s t e a d . ) Y o u c a n a p p l y i t t o y o u r p r o g r a m s , t o o . W h e n w e s p e a k o f f r e e s o f t w a r e , w e a r e r e f e r r i n g t o f r e e d o m , n o t p r i c e . O u r G e n e r a l P u b l i c L i c e n s e s a r e d e s i g n e d t o m a k e s u r e t h a t y o u h a v e t h e f r e e d o m t o d i s t r i b u t e c o p i e s o f f r e e s o f t w a r e ( a n d c h a r g e f o r t h i s s e r v i c e i f y o u w i s h ) , t h a t y o u r e c e i v e s o u r c e c o d e o r c a n g e t i t i f y o u w a n t i t , t h a t y o u c a n c h a n g e t h e s o f t w a r e o r u s e p i e c e s o f i t i n n e w f r e e p r o g r a m s ; a n d t h a t y o u k n o w y o u c a n d o t h e s e t h i n g s . T o p r o t e c t y o u r r i g h t s , w e n e e d t o m a k e r e s t r i c t i o n s t h a t f o r b i d a n y o n e t o d e n y y o u t h e s e r i g h t s o r t o a s k y o u t o s u r r e n d e r t h e r i g h t s . T h e s e r e s t r i c t i o n s t r a n s l a t e t o c e r t a i n r e s p o n s i b i l i t i e s f o r y o u i f y o u d i s t r i b u t e c o p i e s o f t h e s o f t w a r e , o r i f y o u m o d i f y i t . F o r e x a m p l e , i f y o u d i s t r i b u t e c o p i e s o f s u c h a p r o g r a m , w h e t h e r g r a t i s o r f o r a f e e , y o u m u s t g i v e t h e r e c i p i e n t s a l l t h e r i g h t s t h a t y o u h a v e . Y o u m u s t m a k e s u r e t h a t t h e y , t o o , r e c e i v e o r c a n g e t t h e s o u r c e c o d e . A n d y o u m u s t s h o w t h e m t h e s e t e r m s s o t h e y k n o w t h e i r r i g h t s . W e p r o t e c t y o u r r i g h t s w i t h t w o s t e p s : ( 1 ) c o p y r i g h t t h e s o f t w a r e , a n d ( 2 ) o f f e r y o u t h i s l i c e n s e w h i c h g i v e s y o u l e g a l p e r m i s s i o n t o c o p y , d i s t r i b u t e a n d / o r m o d i f y t h e s o f t w a r e . A l s o , f o r e a c h a u t h o r ' s p r o t e c t i o n a n d o u r s , w e w a n t t o m a k e c e r t a i n t h a t e v e r y o n e u n d e r s t a n d s t h a t t h e r e i s n o w a r r a n t y f o r t h i s f r e e s o f t w a r e . I f t h e s o f t w a r e i s m o d i f i e d b y s o m e o n e e l s e a n d p a s s e d o n , w e w a n t i t s r e c i p i e n t s t o k n o w t h a t w h a t t h e y h a v e i s n o t t h e o r i g i n a l , s o t h a t a n y p r o b l e m s i n t r o d u c e d b y o t h e r s w i l l n o t r e f l e c t o n t h e o r i g i n a l a u t h o r s ' r e p u t a t i o n s . F i n a l l y , a n y f r e e p r o g r a m i s t h r e a t e n e d c o n s t a n t l y b y s o f t w a r e p a t e n t s . W e w i s h t o a v o i d t h e d a n g e r t h a t r e d i s t r i b u t o r s o f a f r e e p r o g r a m w i l l i n d i v i d u a l l y o b t a i n p a t e n t l i c e n s e s , i n e f f e c t m a k i n g t h e p r o g r a m p r o p r i e t a r y . T o p r e v e n t t h i s , w e h a v e m a d e i t c l e a r t h a t a n y p a t e n t m u s t b e l i c e n s e d f o r e v e r y o n e ' s f r e e u s e o r n o t l i c e n s e d a t a l l . T h e p r e c i s e t e r m s a n d c o n d i t i o n s f o r c o p y i n g , d i s t r i b u t i o n a n d m o d i f i c a t i o n f o l l o w . G N U G E N E R A L P U B L I C L I C E N S E T E R M S A N D C O N D I T I O N S F O R C O P Y I N G , D I S T R I B U T I O N A N D M O D I F I C A T I O N 0 . T h i s L i c e n s e a p p l i e s t o a n y p r o g r a m o r o t h e r w o r k w h i c h c o n t a i n s a n o t i c e p l a c e d b y t h e c o p y r i g h t h o l d e r s a y i n g i t m a y b e d i s t r i b u t e d u n d e r t h e t e r m s o f t h i s G e n e r a l P u b l i c L i c e n s e . T h e " P r o g r a m " , b e l o w , r e f e r s t o a n y s u c h p r o g r a m o r w o r k , a n d a " w o r k b a s e d o n t h e P r o g r a m " m e a n s e i t h e r t h e P r o g r a m o r a n y d e r i v a t i v e w o r k u n d e r c o p y r i g h t l a w : t h a t i s t o s a y , a w o r k c o n t a i n i n g t h e P r o g r a m o r a p o r t i o n o f i t , e i t h e r v e r b a t i m o r w i t h m o d i f i c a t i o n s a n d / o r t r a n s l a t e d i n t o a n o t h e r l a n g u a g e . ( H e r e i n a f t e r , t r a n s l a t i o n i s i n c l u d e d w i t h o u t l i m i t a t i o n i n t h e t e r m " m o d i f i c a t i o n " . ) E a c h l i c e n s e e i s a d d r e s s e d a s " y o u " . A c t i v i t i e s o t h e r t h a n c o p y i n g , d i s t r i b u t i o n a n d m o d i f i c a t i o n a r e n o t c o v e r e d b y t h i s L i c e n s e ; t h e y a r e o u t s i d e i t s s c o p e . T h e a c t o f r u n n i n g t h e P r o g r a m i s n o t r e s t r i c t e d , a n d t h e o u t p u t f r o m t h e P r o g r a m i s c o v e r e d o n l y i f i t s c o n t e n t s c o n s t i t u t e a w o r k b a s e d o n t h e P r o g r a m ( i n d e p e n d e n t o f h a v i n g b e e n m a d e b y r u n n i n g t h e P r o g r a m ) . W h e t h e r t h a t i s t r u e d e p e n d s o n w h a t t h e P r o g r a m d o e s . 1 . Y o u m a y c o p y a n d d i s t r i b u t e v e r b a t i m c o p i e s o f t h e P r o g r a m ' s s o u r c e c o d e a s y o u r e c e i v e i t , i n a n y m e d i u m , p r o v i d e d t h a t y o u c o n s p i c u o u s l y a n d a p p r o p r i a t e l y p u b l i s h o n e a c h c o p y a n a p p r o p r i a t e c o p y r i g h t n o t i c e a n d d i s c l a i m e r o f w a r r a n t y ; k e e p i n t a c t a l l t h e n o t i c e s t h a t r e f e r t o t h i s L i c e n s e a n d t o t h e a b s e n c e o f a n y w a r r a n t y ; a n d g i v e a n y o t h e r r e c i p i e n t s o f t h e P r o g r a m a c o p y o f t h i s L i c e n s e a l o n g w i t h t h e P r o g r a m . Y o u m a y c h a r g e a f e e f o r t h e p h y s i c a l a c t o f t r a n s f e r r i n g a c o p y , a n d y o u m a y a t y o u r o p t i o n o f f e r w a r r a n t y p r o t e c t i o n i n e x c h a n g e f o r a f e e . 2 . Y o u m a y m o d i f y y o u r c o p y o r c o p i e s o f t h e P r o g r a m o r a n y p o r t i o n o f i t , t h u s f o r m i n g a w o r k b a s e d o n t h e P r o g r a m , a n d c o p y a n d d i s t r i b u t e s u c h m o d i f i c a t i o n s o r w o r k u n d e r t h e t e r m s o f S e c t i o n 1 a b o v e , p r o v i d e d t h a t y o u a l s o m e e t a l l o f t h e s e c o n d i t i o n s : a ) Y o u m u s t c a u s e t h e m o d i f i e d f i l e s t o c a r r y p r o m i n e n t n o t i c e s s t a t i n g t h a t y o u c h a n g e d t h e f i l e s a n d t h e d a t e o f a n y c h a n g e . b ) Y o u m u s t c a u s e a n y w o r k t h a t y o u d i s t r i b u t e o r p u b l i s h , t h a t i n w h o l e o r i n p a r t c o n t a i n s o r i s d e r i v e d f r o m t h e P r o g r a m o r a n y p a r t t h e r e o f , t o b e l i c e n s e d a s a w h o l e a t n o c h a r g e t o a l l t h i r d p a r t i e s u n d e r t h e t e r m s o f t h i s L i c e n s e . c ) I f t h e m o d i f i e d p r o g r a m n o r m a l l y r e a d s c o m m a n d s i n t e r a c t i v e l y w h e n r u n , y o u m u s t c a u s e i t , w h e n s t a r t e d r u n n i n g f o r s u c h i n t e r a c t i v e u s e i n t h e m o s t o r d i n a r y w a y , t o p r i n t o r d i s p l a y a n a n n o u n c e m e n t i n c l u d i n g a n a p p r o p r i a t e c o p y r i g h t n o t i c e a n d a n o t i c e t h a t t h e r e i s n o w a r r a n t y ( o r e l s e , s a y i n g t h a t y o u p r o v i d e a w a r r a n t y ) a n d t h a t u s e r s m a y r e d i s t r i b u t e t h e p r o g r a m u n d e r t h e s e c o n d i t i o n s , a n d t e l l i n g t h e u s e r h o w t o v i e w a c o p y o f t h i s L i c e n s e . ( E x c e p t i o n : i f t h e P r o g r a m i t s e l f i s i n t e r a c t i v e b u t d o e s n o t n o r m a l l y p r i n t s u c h a n a n n o u n c e m e n t , y o u r w o r k b a s e d o n t h e P r o g r a m i s n o t r e q u i r e d t o p r i n t a n a n n o u n c e m e n t . ) T h e s e r e q u i r e m e n t s a p p l y t o t h e m o d i f i e d w o r k a s a w h o l e . I f i d e n t i f i a b l e s e c t i o n s o f t h a t w o r k a r e n o t d e r i v e d f r o m t h e P r o g r a m , a n d c a n b e r e a s o n a b l y c o n s i d e r e d i n d e p e n d e n t a n d s e p a r a t e w o r k s i n t h e m s e l v e s , t h e n t h i s L i c e n s e , a n d i t s t e r m s , d o n o t a p p l y t o t h o s e s e c t i o n s w h e n y o u d i s t r i b u t e t h e m a s s e p a r a t e w o r k s . B u t w h e n y o u d i s t r i b u t e t h e s a m e s e c t i o n s a s p a r t o f a w h o l e w h i c h i s a w o r k b a s e d o n t h e P r o g r a m , t h e d i s t r i b u t i o n o f t h e w h o l e m u s t b e o n t h e t e r m s o f t h i s L i c e n s e , w h o s e p e r m i s s i o n s f o r o t h e r l i c e n s e e s e x t e n d t o t h e e n t i r e w h o l e , a n d t h u s t o e a c h a n d e v e r y p a r t r e g a r d l e s s o f w h o w r o t e i t . T h u s , i t i s n o t t h e i n t e n t o f t h i s s e c t i o n t o c l a i m r i g h t s o r c o n t e s t y o u r r i g h t s t o w o r k w r i t t e n e n t i r e l y b y y o u ; r a t h e r , t h e i n t e n t i s t o e x e r c i s e t h e r i g h t t o c o n t r o l t h e d i s t r i b u t i o n o f d e r i v a t i v e o r c o l l e c t i v e w o r k s b a s e d o n t h e P r o g r a m . I n a d d i t i o n , m e r e a g g r e g a t i o n o f a n o t h e r w o r k n o t b a s e d o n t h e P r o g r a m w i t h t h e P r o g r a m ( o r w i t h a w o r k b a s e d o n t h e P r o g r a m ) o n a v o l u m e o f a s t o r a g e o r d i s t r i b u t i o n m e d i u m d o e s n o t b r i n g t h e o t h e r w o r k u n d e r t h e s c o p e o f t h i s L i c e n s e . 3 . Y o u m a y c o p y a n d d i s t r i b u t e t h e P r o g r a m ( o r a w o r k b a s e d o n i t , u n d e r S e c t i o n 2 ) i n o b j e c t c o d e o r e x e c u t a b l e f o r m u n d e r t h e t e r m s o f S e c t i o n s 1 a n d 2 a b o v e p r o v i d e d t h a t y o u a l s o d o o n e o f t h e f o l l o w i n g : a ) A c c o m p a n y i t w i t h t h e c o m p l e t e c o r r e s p o n d i n g m a c h i n e - r e a d a b l e s o u r c e c o d e , w h i c h m u s t b e d i s t r i b u t e d u n d e r t h e t e r m s o f S e c t i o n s 1 a n d 2 a b o v e o n a m e d i u m c u s t o m a r i l y u s e d f o r s o f t w a r e i n t e r c h a n g e ; o r , b ) A c c o m p a n y i t w i t h a w r i t t e n o f f e r , v a l i d f o r a t l e a s t t h r e e y e a r s , t o g i v e a n y t h i r d p a r t y , f o r a c h a r g e n o m o r e t h a n y o u r c o s t o f p h y s i c a l l y p e r f o r m i n g s o u r c e d i s t r i b u t i o n , a c o m p l e t e m a c h i n e - r e a d a b l e c o p y o f t h e c o r r e s p o n d i n g s o u r c e c o d e , t o b e d i s t r i b u t e d u n d e r t h e t e r m s o f S e c t i o n s 1 a n d 2 a b o v e o n a m e d i u m c u s t o m a r i l y u s e d f o r s o f t w a r e i n t e r c h a n g e ; o r , c ) A c c o m p a n y i t w i t h t h e i n f o r m a t i o n y o u r e c e i v e d a s t o t h e o f f e r t o d i s t r i b u t e c o r r e s p o n d i n g s o u r c e c o d e . ( T h i s a l t e r n a t i v e i s a l l o w e d o n l y f o r n o n c o m m e r c i a l d i s t r i b u t i o n a n d o n l y i f y o u r e c e i v e d t h e p r o g r a m i n o b j e c t c o d e o r e x e c u t a b l e f o r m w i t h s u c h a n o f f e r , i n a c c o r d w i t h S u b s e c t i o n b a b o v e . ) T h e s o u r c e c o d e f o r a w o r k m e a n s t h e p r e f e r r e d f o r m o f t h e w o r k f o r m a k i n g m o d i f i c a t i o n s t o i t . F o r a n e x e c u t a b l e w o r k , c o m p l e t e s o u r c e c o d e m e a n s a l l t h e s o u r c e c o d e f o r a l l m o d u l e s i t c o n t a i n s , p l u s a n y a s s o c i a t e d i n t e r f a c e d e f i n i t i o n f i l e s , p l u s t h e s c r i p t s u s e d t o c o n t r o l c o m p i l a t i o n a n d i n s t a l l a t i o n o f t h e e x e c u t a b l e . H o w e v e r , a s a s p e c i a l e x c e p t i o n , t h e s o u r c e c o d e d i s t r i b u t e d n e e d n o t i n c l u d e a n y t h i n g t h a t i s n o r m a l l y d i s t r i b u t e d ( i n e i t h e r s o u r c e o r b i n a r y f o r m ) w i t h t h e m a j o r c o m p o n e n t s ( c o m p i l e r , k e r n e l , a n d s o o n ) o f t h e o p e r a t i n g s y s t e m o n w h i c h t h e e x e c u t a b l e r u n s , u n l e s s t h a t c o m p o n e n t i t s e l f a c c o m p a n i e s t h e e x e c u t a b l e . I f d i s t r i b u t i o n o f e x e c u t a b l e o r o b j e c t c o d e i s m a d e b y o f f e r i n g a c c e s s t o c o p y f r o m a d e s i g n a t e d p l a c e , t h e n o f f e r i n g e q u i v a l e n t a c c e s s t o c o p y t h e s o u r c e c o d e f r o m t h e s a m e p l a c e c o u n t s a s d i s t r i b u t i o n o f t h e s o u r c e c o d e , e v e n t h o u g h t h i r d p a r t i e s a r e n o t c o m p e l l e d t o c o p y t h e s o u r c e a l o n g w i t h t h e o b j e c t c o d e . 4 . Y o u m a y n o t c o p y , m o d i f y , s u b l i c e n s e , o r d i s t r i b u t e t h e P r o g r a m e x c e p t a s e x p r e s s l y p r o v i d e d u n d e r t h i s L i c e n s e . A n y a t t e m p t o t h e r w i s e t o c o p y , m o d i f y , s u b l i c e n s e o r d i s t r i b u t e t h e P r o g r a m i s v o i d , a n d w i l l a u t o m a t i c a l l y t e r m i n a t e y o u r r i g h t s u n d e r t h i s L i c e n s e . H o w e v e r , p a r t i e s w h o h a v e r e c e i v e d c o p i e s , o r r i g h t s , f r o m y o u u n d e r t h i s L i c e n s e w i l l n o t h a v e t h e i r l i c e n s e s t e r m i n a t e d s o l o n g a s s u c h p a r t i e s r e m a i n i n f u l l c o m p l i a n c e . 5 . Y o u a r e n o t r e q u i r e d t o a c c e p t t h i s L i c e n s e , s i n c e y o u h a v e n o t s i g n e d i t . H o w e v e r , n o t h i n g e l s e g r a n t s y o u p e r m i s s i o n t o m o d i f y o r d i s t r i b u t e t h e P r o g r a m o r i t s d e r i v a t i v e w o r k s . T h e s e a c t i o n s a r e p r o h i b i t e d b y l a w i f y o u d o n o t a c c e p t t h i s L i c e n s e . T h e r e f o r e , b y m o d i f y i n g o r d i s t r i b u t i n g t h e P r o g r a m ( o r a n y w o r k b a s e d o n t h e P r o g r a m ) , y o u i n d i c a t e y o u r a c c e p t a n c e o f t h i s L i c e n s e t o d o s o , a n d a l l i t s t e r m s a n d c o n d i t i o n s f o r c o p y i n g , d i s t r i b u t i n g o r m o d i f y i n g t h e P r o g r a m o r w o r k s b a s e d o n i t . 6 . E a c h t i m e y o u r e d i s t r i b u t e t h e P r o g r a m ( o r a n y w o r k b a s e d o n t h e P r o g r a m ) , t h e r e c i p i e n t a u t o m a t i c a l l y r e c e i v e s a l i c e n s e f r o m t h e o r i g i n a l l i c e n s o r t o c o p y , d i s t r i b u t e o r m o d i f y t h e P r o g r a m s u b j e c t t o t h e s e t e r m s a n d c o n d i t i o n s . Y o u m a y n o t i m p o s e a n y f u r t h e r r e s t r i c t i o n s o n t h e r e c i p i e n t s ' e x e r c i s e o f t h e r i g h t s g r a n t e d h e r e i n . Y o u a r e n o t r e s p o n s i b l e f o r e n f o r c i n g c o m p l i a n c e b y t h i r d p a r t i e s t o t h i s L i c e n s e . 7 . I f , a s a c o n s e q u e n c e o f a c o u r t j u d g m e n t o r a l l e g a t i o n o f p a t e n t i n f r i n g e m e n t o r f o r a n y o t h e r r e a s o n ( n o t l i m i t e d t o p a t e n t i s s u e s ) , c o n d i t i o n s a r e i m p o s e d o n y o u ( w h e t h e r b y c o u r t o r d e r , a g r e e m e n t o r o t h e r w i s e ) t h a t c o n t r a d i c t t h e c o n d i t i o n s o f t h i s L i c e n s e , t h e y d o n o t e x c u s e y o u f r o m t h e c o n d i t i o n s o f t h i s L i c e n s e . I f y o u c a n n o t d i s t r i b u t e s o a s t o s a t i s f y s i m u l t a n e o u s l y y o u r o b l i g a t i o n s u n d e r t h i s L i c e n s e a n d a n y o t h e r p e r t i n e n t o b l i g a t i o n s , t h e n a s a c o n s e q u e n c e y o u m a y n o t d i s t r i b u t e t h e P r o g r a m a t a l l . F o r e x a m p l e , i f a p a t e n t l i c e n s e w o u l d n o t p e r m i t r o y a l t y - f r e e r e d i s t r i b u t i o n o f t h e P r o g r a m b y a l l t h o s e w h o r e c e i v e c o p i e s d i r e c t l y o r i n d i r e c t l y t h r o u g h y o u , t h e n t h e o n l y w a y y o u c o u l d s a t i s f y b o t h i t a n d t h i s L i c e n s e w o u l d b e t o r e f r a i n e n t i r e l y f r o m d i s t r i b u t i o n o f t h e P r o g r a m . I f a n y p o r t i o n o f t h i s s e c t i o n i s h e l d i n v a l i d o r u n e n f o r c e a b l e u n d e r a n y p a r t i c u l a r c i r c u m s t a n c e , t h e b a l a n c e o f t h e s e c t i o n i s i n t e n d e d t o a p p l y a n d t h e s e c t i o n a s a w h o l e i s i n t e n d e d t o a p p l y i n o t h e r c i r c u m s t a n c e s . I t i s n o t t h e p u r p o s e o f t h i s s e c t i o n t o i n d u c e y o u t o i n f r i n g e a n y p a t e n t s o r o t h e r p r o p e r t y r i g h t c l a i m s o r t o c o n t e s t v a l i d i t y o f a n y s u c h c l a i m s ; t h i s s e c t i o n h a s t h e s o l e p u r p o s e o f p r o t e c t i n g t h e i n t e g r i t y o f t h e f r e e s o f t w a r e d i s t r i b u t i o n s y s t e m , w h i c h i s i m p l e m e n t e d b y p u b l i c l i c e n s e p r a c t i c e s . M a n y p e o p l e h a v e m a d e g e n e r o u s c o n t r i b u t i o n s t o t h e w i d e r a n g e o f s o f t w a r e d i s t r i b u t e d t h r o u g h t h a t s y s t e m i n r e l i a n c e o n c o n s i s t e n t a p p l i c a t i o n o f t h a t s y s t e m ; i t i s u p t o t h e a u t h o r / d o n o r t o d e c i d e i f h e o r s h e i s w i l l i n g t o d i s t r i b u t e s o f t w a r e t h r o u g h a n y o t h e r s y s t e m a n d a l i c e n s e e c a n n o t i m p o s e t h a t c h o i c e . T h i s s e c t i o n i s i n t e n d e d t o m a k e t h o r o u g h l y c l e a r w h a t i s b e l i e v e d t o b e a c o n s e q u e n c e o f t h e r e s t o f t h i s L i c e n s e . 8 . I f t h e d i s t r i b u t i o n a n d / o r u s e o f t h e P r o g r a m i s r e s t r i c t e d i n c e r t a i n c o u n t r i e s e i t h e r b y p a t e n t s o r b y c o p y r i g h t e d i n t e r f a c e s , t h e o r i g i n a l c o p y r i g h t h o l d e r w h o p l a c e s t h e P r o g r a m u n d e r t h i s L i c e n s e m a y a d d a n e x p l i c i t g e o g r a p h i c a l d i s t r i b u t i o n l i m i t a t i o n e x c l u d i n g t h o s e c o u n t r i e s , s o t h a t d i s t r i b u t i o n i s p e r m i t t e d o n l y i n o r a m o n g c o u n t r i e s n o t t h u s e x c l u d e d . I n s u c h c a s e , t h i s L i c e n s e i n c o r p o r a t e s t h e l i m i t a t i o n a s i f w r i t t e n i n t h e b o d y o f t h i s L i c e n s e . 9 . T h e F r e e S o f t w a r e F o u n d a t i o n m a y p u b l i s h r e v i s e d a n d / o r n e w v e r s i o n s o f t h e G e n e r a l P u b l i c L i c e n s e f r o m t i m e t o t i m e . S u c h n e w v e r s i o n s w i l l b e s i m i l a r i n s p i r i t t o t h e p r e s e n t v e r s i o n , b u t m a y d i f f e r i n d e t a i l t o a d d r e s s n e w p r o b l e m s o r c o n c e r n s . E a c h v e r s i o n i s g i v e n a d i s t i n g u i s h i n g v e r s i o n n u m b e r . I f t h e P r o g r a m s p e c i f i e s a v e r s i o n n u m b e r o f t h i s L i c e n s e w h i c h a p p l i e s t o i t a n d " a n y l a t e r v e r s i o n " , y o u h a v e t h e o p t i o n o f f o l l o w i n g t h e t e r m s a n d c o n d i t i o n s e i t h e r o f t h a t v e r s i o n o r o f a n y l a t e r v e r s i o n p u b l i s h e d b y t h e F r e e S o f t w a r e F o u n d a t i o n . I f t h e P r o g r a m d o e s n o t s p e c i f y a v e r s i o n n u m b e r o f t h i s L i c e n s e , y o u m a y c h o o s e a n y v e r s i o n e v e r p u b l i s h e d b y t h e F r e e S o f t w a r e F o u n d a t i o n . 1 0 . I f y o u w i s h t o i n c o r p o r a t e p a r t s o f t h e P r o g r a m i n t o o t h e r f r e e p r o g r a m s w h o s e d i s t r i b u t i o n c o n d i t i o n s a r e d i f f e r e n t , w r i t e t o t h e a u t h o r t o a s k f o r p e r m i s s i o n . F o r s o f t w a r e w h i c h i s c o p y r i g h t e d b y t h e F r e e S o f t w a r e F o u n d a t i o n , w r i t e t o t h e F r e e S o f t w a r e F o u n d a t i o n ; w e s o m e t i m e s m a k e e x c e p t i o n s f o r t h i s . O u r d e c i s i o n w i l l b e g u i d e d b y t h e t w o g o a l s o f p r e s e r v i n g t h e f r e e s t a t u s o f a l l d e r i v a t i v e s o f o u r f r e e s o f t w a r e a n d o f p r o m o t i n g t h e s h a r i n g a n d r e u s e o f s o f t w a r e g e n e r a l l y . N O W A R R A N T Y 1 1 . B E C A U S E T H E P R O G R A M I S L I C E N S E D F R E E O F C H A R G E , T H E R E I S N O W A R R A N T Y F O R T H E P R O G R A M , T O T H E E X T E N T P E R M I T T E D B Y A P P L I C A B L E L A W . E X C E P T W H E N O T H E R W I S E S T A T E D I N W R I T I N G T H E C O P Y R I G H T H O L D E R S A N D / O R O T H E R P A R T I E S P R O V I D E T H E P R O G R A M " A S I S " W I T H O U T W A R R A N T Y O F A N Y K I N D , E I T H E R E X P R E S S E D O R I M P L I E D , I N C L U D I N G , B U T N O T L I M I T E D T O , T H E I M P L I E D W A R R A N T I E S O F M E R C H A N T A B I L I T Y A N D F I T N E S S F O R A P A R T I C U L A R P U R P O S E . T H E E N T I R E R I S K A S T O T H E Q U A L I T Y A N D P E R F O R M A N C E O F T H E P R O G R A M I S W I T H Y O U . S H O U L D T H E P R O G R A M P R O V E D E F E C T I V E , Y O U A S S U M E T H E C O S T O F A L L N E C E S S A R Y S E R V I C I N G , R E P A I R O R C O R R E C T I O N . 1 2 . I N N O E V E N T U N L E S S R E Q U I R E D B Y A P P L I C A B L E L A W O R A G R E E D T O I N W R I T I N G W I L L A N Y C O P Y R I G H T H O L D E R , O R A N Y O T H E R P A R T Y W H O M A Y M O D I F Y A N D / O R R E D I S T R I B U T E T H E P R O G R A M A S P E R M I T T E D A B O V E , B E L I A B L E T O Y O U F O R D A M A G E S , I N C L U D I N G A N Y G E N E R A L , S P E C I A L , I N C I D E N T A L O R C O N S E Q U E N T I A L D A M A G E S A R I S I N G O U T O F T H E U S E O R I N A B I L I T Y T O U S E T H E P R O G R A M ( I N C L U D I N G B U T N O T L I M I T E D T O L O S S O F D A T A O R D A T A B E I N G R E N D E R E D I N A C C U R A T E O R L O S S E S S U S T A I N E D B Y Y O U O R T H I R D P A R T I E S O R A F A I L U R E O F T H E P R O G R A M T O O P E R A T E W I T H A N Y O T H E R P R O G R A M S ) , E V E N I F S U C H H O L D E R O R O T H E R P A R T Y H A S B E E N A D V I S E D O F T H E P O S S I B I L I T Y O F S U C H D A M A G E S . E N D O F T E R M S A N D C O N D I T I O N S H o w t o A p p l y T h e s e T e r m s t o Y o u r N e w P r o g r a m s I f y o u d e v e l o p a n e w p r o g r a m , a n d y o u w a n t i t t o b e o f t h e g r e a t e s t p o s s i b l e u s e t o t h e p u b l i c , t h e b e s t w a y t o a c h i e v e t h i s i s t o m a k e i t f r e e s o f t w a r e w h i c h e v e r y o n e c a n r e d i s t r i b u t e a n d c h a n g e u n d e r t h e s e t e r m s . T o d o s o , a t t a c h t h e f o l l o w i n g n o t i c e s t o t h e p r o g r a m . I t i s s a f e s t t o a t t a c h t h e m t o t h e s t a r t o f e a c h s o u r c e f i l e t o m o s t e f f e c t i v e l y c o n v e y t h e e x c l u s i o n o f w a r r a n t y ; a n d e a c h f i l e s h o u l d h a v e a t l e a s t t h e " c o p y r i g h t " l i n e a n d a p o i n t e r t o w h e r e t h e f u l l n o t i c e i s f o u n d . C o p y r i g h t ( C ) T h i s p r o g r a m i s f r e e s o f t w a r e ; y o u c a n r e d i s t r i b u t e i t a n d / o r m o d i f y i t u n d e r t h e t e r m s o f t h e G N U G e n e r a l P u b l i c L i c e n s e a s p u b l i s h e d b y t h e F r e e S o f t w a r e F o u n d a t i o n ; e i t h e r v e r s i o n 2 o f t h e L i c e n s e , o r ( a t y o u r o p t i o n ) a n y l a t e r v e r s i o n . T h i s p r o g r a m i s d i s t r i b u t e d i n t h e h o p e t h a t i t w i l l b e u s e f u l , b u t W I T H O U T A N Y W A R R A N T Y ; w i t h o u t e v e n t h e i m p l i e d w a r r a n t y o f M E R C H A N T A B I L I T Y o r F I T N E S S F O R A P A R T I C U L A R P U R P O S E . S e e t h e G N U G e n e r a l P u b l i c L i c e n s e f o r m o r e d e t a i l s . Y o u s h o u l d h a v e r e c e i v e d a c o p y o f t h e G N U G e n e r a l P u b l i c L i c e n s e a l o n g w i t h t h i s p r o g r a m ; i f n o t , w r i t e t o t h e F r e e S o f t w a r e F o u n d a t i o n , I n c . , 5 9 T e m p l e P l a c e , S u i t e 3 3 0 , B o s t o n , M A 0 2 1 1 1 - 1 3 0 7 U S A A l s o a d d i n f o r m a t i o n o n h o w t o c o n t a c t y o u b y e l e c t r o n i c a n d p a p e r m a i l . I f t h e p r o g r a m i s i n t e r a c t i v e , m a k e i t o u t p u t a s h o r t n o t i c e l i k e t h i s w h e n i t s t a r t s i n a n i n t e r a c t i v e m o d e : G n o m o v i s i o n v e r s i o n 6 9 , C o p y r i g h t ( C ) y e a r n a m e o f a u t h o r G n o m o v i s i o n c o m e s w i t h A B S O L U T E L Y N O W A R R A N T Y ; f o r d e t a i l s t y p e ` s h o w w ' . T h i s i s f r e e s o f t w a r e , a n d y o u a r e w e l c o m e t o r e d i s t r i b u t e i t u n d e r c e r t a i n c o n d i t i o n s ; t y p e ` s h o w c ' f o r d e t a i l s . T h e h y p o t h e t i c a l c o m m a n d s ` s h o w w ' a n d ` s h o w c ' s h o u l d s h o w t h e a p p r o p r i a t e p a r t s o f t h e G e n e r a l P u b l i c L i c e n s e . O f c o u r s e , t h e c o m m a n d s y o u u s e m a y b e c a l l e d s o m e t h i n g o t h e r t h a n ` s h o w w ' a n d ` s h o w c ' ; t h e y c o u l d e v e n b e m o u s e - c l i c k s o r m e n u i t e m s - - w h a t e v e r s u i t s y o u r p r o g r a m . Y o u s h o u l d a l s o g e t y o u r e m p l o y e r ( i f y o u w o r k a s a p r o g r a m m e r ) o r y o u r s c h o o l , i f a n y , t o s i g n a " c o p y r i g h t d i s c l a i m e r " f o r t h e p r o g r a m , i f n e c e s s a r y . H e r e i s a s a m p l e ; a l t e r t h e n a m e s : Y o y o d y n e , I n c . , h e r e b y d i s c l a i m s a l l c o p y r i g h t i n t e r e s t i n t h e p r o g r a m ` G n o m o v i s i o n ' ( w h i c h m a k e s p a s s e s a t c o m p i l e r s ) w r i t t e n b y J a m e s H a c k e r . , 1 A p r i l 1 9 8 9 T y C o o n , P r e s i d e n t o f V i c e T h i s G e n e r a l P u b l i c L i c e n s e d o e s n o t p e r m i t i n c o r p o r a t i n g y o u r p r o g r a m i n t o p r o p r i e t a r y p r o g r a m s . I f y o u r p r o g r a m i s a s u b r o u t i n e l i b r a r y , y o u m a y c o n s i d e r i t m o r e u s e f u l t o p e r m i t l i n k i n g p r o p r i e t a r y a p p l i c a t i o n s w i t h t h e l i b r a r y . I f t h i s i s w h a t y o u w a n t t o d o , u s e t h e G N U L i b r a r y G e n e r a l P u b l i c L i c e n s e i n s t e a d o f t h i s L i c e n s e . < / p > < / b o d y > < / h t m l > EGNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License.
aboutDialog < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 1 6 p x ; m a r g i n - b o t t o m : 1 2 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; f o n t - s i z e : x - l a r g e ; f o n t - w e i g h t : 6 0 0 ; " > < s p a n s t y l e = " f o n t - s i z e : x - l a r g e ; " > T r a d u c c i o n e s : < / s p a n > < / p > < p s t y l e = " m a r g i n - t o p : 1 4 p x ; m a r g i n - b o t t o m : 1 2 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; f o n t - s i z e : l a r g e ; f o n t - w e i g h t : 6 0 0 ; " > < s p a n s t y l e = " f o n t - s i z e : l a r g e ; " > F r a n c s : < / s p a n > < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > Y a n n C h e m i n < / p > < p s t y l e = " m a r g i n - t o p : 1 4 p x ; m a r g i n - b o t t o m : 1 2 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; f o n t - s i z e : l a r g e ; f o n t - w e i g h t : 6 0 0 ; " > < s p a n s t y l e = " f o n t - s i z e : l a r g e ; " > E s p a o l : < / s p a n > < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > I g n a c i o S e r r a n o A y l l n < / p > < / b o d y > < / h t m l > Translations:
French:
Yann Chemin
aboutDialog < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 1 8 p x ; m a r g i n - b o t t o m : 1 2 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; f o n t - s i z e : x x - l a r g e ; f o n t - w e i g h t : 6 0 0 ; " > < s p a n s t y l e = " f o n t - s i z e : x x - l a r g e ; " > D e v e l o p e r s : < / s p a n > < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > F l v i o C o d e o C o e l h o < b r / > C l u d i a T o r r e s C o d e o < / p > < / b o d y > < / h t m l > lDevelopers:
Flávio Codeço Coelho
aboutDialog < s p a n s t y l e = " f o n t - w e i g h t : b o l d ; " > E s t a e s l a v e r s i n d e E p i g r a s s 1 . 5 . 0 < b r > < b r > P a r a m s i n f o r m a c i n s o b r e E p i g r a s s M o r e i n f o r m a t i o n a b o u t E p i g r a s s c a n b e f o u n d a t t h e e p i g r a s s < a h r e f = " h t t p : / / e p i g r a s s . s o u r c e f o r g e . n e t " > w e b s i t e < / a > < / s p a n > This is Epigrass version
1.5.0website aboutDialog
S o b r e About aboutDialog S o b r e E p i g r a s s About Epigrass aboutDialog A g r a d e c i m i e n t o s Acknowledgements aboutDialog
A l t + C Alt+C aboutDialog A u t o r e s Authors aboutDialog L i c e n c i a License aboutDialog P a r a u s a r E p i g g r a s s h a d e e s t a r d e a c u e r d o c o n l o s t r m i n o s d e l a l i c e n c i a 3To use Epigrass you have to agree with this license aboutDialog epigrass-2.4.7/Epigrass/epigrass_es.ts 0000664 0000000 0000000 00000455336 12727601517 017762 0 ustar root root 0000000 0000000
Editor
Required variable missing
Variable requerida no encontrada
Variable %s was missing. Variable created and value set to default
La variable %s no se ha encontrado. La variable creada tendrá los valores por defecto
Required section missing
La sección requerida no se ha encontrado
Section %s was missing. It was added to your file with default values for its variables.
La sección requerida no se ha encontrado. Se ha añadido al archivo con los valores por defecto para sus variables.
About .EPG Editor
Sobre .EPG Editor
This editor is for creating or modifying .epg files.
Este editor es para crear o modificar archivos .epg.
Open .epg File
Abrir un fichero .epg
*.epg
*.epg
File Name
Nombre de archivo
Enter a name for you new .epg file:
Introduzca un nombre para el nuevo fichero .epg:
Choose Section
Elegir sección
Select a section to which you want to add a variable:
Selecciona la sección a la que quiera añadir una variable:
Variable Name
Nombre de la variable
Enter the name of the variable to be created
Introduzca el nombre de la variable a crear
Save File as
Salvar archivo como
Form
Simulation Display
Representar simulación
Geographical View
Vista geográfica
Time Series
Series temporales
Stop
Parar
Replay
GraphWidget
Network View
Vista de red
Click and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys
Pulsar y arrastrar sobre los nodos, hacer zoom con la rueda del ratón o las teclas "+" o "-"
MainPanel
Epigrass Control Panel
Panel de control de Epigrass
Run Options
Opciones de ejecución
Model Specification
especificación del modelo
Script Name:
Nombre del script:
write the name of the your script or press the choose button on the right to select one.
Escribe el nombre de tu script o presiona el botón elegir a la derecha para seleccionar uno.
Choose
Elegir
Edit
Editar
Database type:
Tipo de base de datos:
Select your database type
Selecciona el tipo de tu base de datos
MySQL
MySQL
SQLite
SQLite
CSV
CSV
Database Specification
Especificación de la base de datos
Host:
Host:
Port:
Puerto:
This is the url of your database server.
Este es el Url de tu servidor de bases de datos.
localhost
localhost
Enter the port the server listens to.
Introducir el puerto de escucha del servidor.
3306
3306
Userid:
Id de usuario:
Password:
Contraseña:
This is the userid for accessing the database server
Este es el Id de ususario para acceder al servidor de bases de datos
Database password for the userid entered
Contraseña de usuario para la base de datos introducida
Settings
Ajustes
Name
Nombre
Enter your full name. This will be added to the report.
Escriba su nombre completo. Se añadirá al Informe.
Editor
editor
Enter your preferred text editor
Indica tu editor de texto preferido
PDF Viewer
Visor de PDF
Enter the name of your preferred PDF viewer
Indica tu editor de PDF preferido
Language
Idioma
Select the language for the GUI
Selecciona idioma para la GUI
English
Inglés
Brazilian portuguese
Portugés Brasileño
French
Francés
Utilities
Utilidades
Simulation Status
Estado de la Simulación
Database
Base de Datos
Click here to backup the epigrass database
Pulsar para realizar una copia de seguridad de la Base de Datos
Backup
Copia de seguridad
Click here for a short description of the epigrass database
Pulsar para ver una pequeña descripción de la Base de Datos
Info
Información
Report
Informe
Open
Abrir
Visualization
Visualización
Simulations stored:
Simulación almacenada:
Select a database stored simulation
Seleccionar una simulación almacenada
Variable to display:
Variable a visualizar:
Select a variable to display in the animation
Seleccionar la variable a visualizar en la simulación
Maps available:
Mapas disponibles:
Select a map
Selecionar un mar
No map
No hay mapas
Scan DB
Escanear la Base de Datos
Animation rate
Porcentaje de animación
Start 2D animation
Comenzar animación 2D
Start 3D animation
Comenzar animación 3D
Spread Trees
Arboles de propagación
Select a directory with tree-files to build consensus on.
Selecciona un directorio con ficheros de árbol para construir el consenso.
Consensus Tree
Arbol de consenso
Progress:
Progreso:
Simulation step
Paso de simulación
Click here to open the userguide in the web browser
Pulsar para abrir la guia de usuario en el navegador
&Help
&Ayuda
F1
F1
Click here to start your simulation
Pulsar para comenzar la simulación
&Run
&Ejecutar
Alt+R
Alt+R
Click here to leave Epigrass
Pulsar para salir de Epigrass
&Exit
&Salir
Alt+E
Alt+E
MainWindow
.EPG Editor
Editor .EPG
Editor
Editor
Variable
Variable
Value
Valor
Description
Descripción
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Save file</p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Save file</p></body></html>
Add variable
Añadir variable
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Leave the editor.</p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Leave the editor.</p></body></html>
Exit
Salir
Viewer
Visor
Help
Ayuda
Usage help
Uso de Ayuda
File
Archivo
&Help
&Ayuda
F1
F1
&About
&Sobre
About &Epigrass
Sobre &EPG
Auto-&Refresh
Auto&Refresco
&Open .epg File
&Abrir archivo .epg
Ctrl+O
Ctrl+O
&Save
&Guardar
Ctrl+S
Ctrl+5
E&xit
Sa&lida
Ctrl+X
Ctrl+X
&Refresh
&Refrescar
Ctrl+R
Ctrl+R
&New
&Nuevo
Ctrl+N
Ctrl+N
Simulation Display
Visualizar Simulación
Click and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys
Pulsar y arrastrar sobre los nodos con el ratón , y hacer zoom con la rueda del ratón o las teclas "+" y"-"
Epigrass
Epigrass
Run Options
Opciones de ejecución
Model Specification
especificación del modelo
Choose
Elegir
Script Name:
Nombre del script:
write the name of the your script or press the choose button on the right to select one.
Escribe el nombre de tu script o presiona el botón elegir a la derecha para seleccionar uno.
Edit
Editar
Database Specification
Especificación de la base de datos
Host:
Host:
Enter the port the server listens to.
Introducir el puerto de escucha del servidor.
3306
3306
Port:
Puerto:
Database password for the userid entered
Contraseña de usuario para la base de datos introducida
Password:
Contraseña:
Userid:
Id de usuario:
This is the url of your database server.
Este es el Url de tu servidor de bases de datos.
localhost
localhost
This is the userid for accessing the database server
Este es el Id de ususario para acceder al servidor de bases de datos
Database type:
Tipo de base de datos:
Select your database type
Selecciona el tipo de tu base de datos
MySQL
MySQL
SQLite
SQLite
CSV
CSV
Settings
Ajustes
Enter your full name. This will be added to the report.
Escriba su nombre completo. Se añadirá al Informe.
Language
Idioma
Select the language for the GUI
Selecciona idioma para la GUI
English
Inglés
Brazilian portuguese
Portugés Brasileño
French
Francés
Spanish
Español
PDF Viewer
Visor de PDF
Name
Nombre
Enter your preferred text editor
Indica tu editor de texto preferido
Enter the name of your preferred PDF viewer
Indica tu editor de PDF preferido
Utilities
Utilidades
Simulation Status
Estado de la Simulación
Database
Base de Datos
Click here to backup the epigrass database
Pulsar para realizar una copia de seguridad de la Base de Datos
Backup
Copia de seguridad
Click here for a short description of the epigrass database
Pulsar para ver una pequeña descripción de la Base de Datos
Info
Información
Report
Informe
Open
Abrir
Visualization
Visualización
Spread Trees
Arboles de propagación
Select a directory with tree-files to build consensus on.
Selecciona un directorio con ficheros de árbol para construir el consenso.
Consensus Tree
Arbol de consenso
Simulations stored:
Simulación almacenada:
Select a database stored simulation
Seleccionar una simulación almacenada
Variable to display:
Variable a visualizar:
Select a variable to display in the animation
Seleccionar la variable a visualizar en la simulación
Maps available:
Mapas disponibles:
Select a map
Selecionar un mar
No map
No hay mapas
Scan DB
Escanear la Base de Datos
Animation rate
Porcentaje de animación
Time steps per second
pasos por segundo
Start animation
Progress:
Progreso:
Simulation step
Paso de simulación
Click here to open the userguide in the web browser
Pulsar para abrir la guia de usuario en el navegador
Click here to start your simulation
Pulsar para comenzar la simulación
&Run
&Ejecutar
Alt+R
Alt+R
Click here to leave Epigrass
Pulsar para salir de Epigrass
&Exit
&Salir
Alt+E
Alt+E
MainWindow_Impl
Syntax Error
Error de Sintaxis
Please check file .epigrassrc for missing %s keyword
from section %s
Por favor, comprobar el archivo .epigrassrc por no encotrarse la clave %s de la sección %s
Incomplete Configuration
Configuración incompleta
Please enter a value for %s.
Por favor introducir un valor para %s.
&OK
&OK
Editor or Script not selected
Editor o script no encontrado
Please make sure you have selected both
an editor and your model's script.
Por favor, asegurese de haber seleccionado un editor y el script del modelo.
Select your Model's Script
Seleccione su script del modelo
*.epg
*.epg
Missing Database Password
Contraseña de Base de datos no válida
Please enter password for MySQL database.
Por favor, introduzca la contraseña para la Base de Datos MySQL.
Non-local Database Server
Servidor de BAse de datos no local
Currently, the database backup function only
works on local database servers.
Actualmente, la función de copia de sguridad sólo funciona en servidores locales.
Restore Instructions:
Instrucciones de restauración:
The epigrass database has been Backed up
to a file named "epigrass.sql".
This file is in you current working directory.
To restore the database type:
epigrass.sql > mysql
La Base de datos de Epigrass ha sido respaldada a un archivo de nombre "epigrass.sql". este archivo es el actual directorio de trabajo. Para restaurar la base de datos escribe: epigrass.sql >mysql
No Report
No hay informes
Could not open the report.
Make sure you have generated it.
No se puede abrir el informe. Asegurese de haberlo generado.
Please enter the password for the MySQL database in the first tab.
Por favor introduzca la contraseña para la base de datos MySQLen el primer espacio.
Empty Table
Tabla vacia
You have selected an empty table.
Please select another table from the menu.
Ha seleccionado una tabla vacia. Por favor, seleccione otra tabla del menú.
Select Directory with Tree Files (epipath*.csv)
Seleccione el directorio con los archivos de árbol (epipath* .csv)
Branch Support
Soporte de ramificación
Enter minimum branch support level to display:
Introduzca el nivel mínimo de soporte de ramas a mostrar:
aboutDialog
About Epigrass
Sobre Epigrass
About
Sobre
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">This is Epigrass version 1.5.0<br /><br />More information about Epigrass can be found at the epigrass </span><a href="http://epigrass.sourceforge.net"><span style=" font-weight:600; text-decoration: underline; color:#0000ff;">website</span></a></p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">This is Epigrass version 1.5.0<br /><br />More information about Epigrass can be found at the epigrass </span><a href="http://epigrass.sourceforge.net"><span style=" font-weight:600; text-decoration: underline; color:#0000ff;">website</span></a></p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">Epigrass</span>: </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">EPI</span>demiological </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">G</span>eo-<span style=" font-weight:600;">R</span>eferenced </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">A</span>nalysis and </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>imulation </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>ystem</p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">Epigrass</span>: </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">EPI</span>demiological </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">G</span>eo-<span style=" font-weight:600;">R</span>eferenced </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">A</span>nalysis and </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>imulation </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>ystem</p></body></html>
Authors
Autores
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:18px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:xx-large; font-weight:600;"><span style=" font-size:xx-large;">Developers:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Flávio Codeço Coelho<br />Cláudia Torres Codeço </p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:18px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:xx-large; font-weight:600;"><span style=" font-size:xx-large;">Developers:</span></p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Flávio Codeço Coelho<br />Cláudia Torres Codeço </p></body></html>
Acknowledgements
Agradecimientos
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:16px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:x-large; font-weight:600;"><span style=" font-size:x-large;">Translations:</span></p>
<p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">French:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Yann Chemin </p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:16px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:x-large; font-weight:600;"><span style=" font-size:x-large;">Traducciones:</span></p><p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">Francés:</span></p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Yann Chemin </p><p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">Español:</span></p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Ignacio Serrano Ayllón </p></body></html>
License
Licencia
To use Epigrass you have to agree with this license
Para usar Epiggrass ha de estar de acuerdo con los términos de la licencia
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p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. </p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. </p></body></html>
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<span style="font-weight: bold;">This is Epigrass version
1.5.0<br>
<br>
More information about Epigrass can be found at the epigrass <a
href="http://epigrass.sourceforge.net">website</a></span>
<span style="font-weight: bold;">Esta es la versión de Epigrass1.5.0<br><br>Para más información sobre Epigrass More information about Epigrass can be found at the epigrass <a href="http://epigrass.sourceforge.net">website</a></span>
<h1>Developers:</h1>
Flávio Codeço Coelho<br>
Cláudia Torres Codeço
<h1>Desarrolladores:</h1>Flávio Codeço Coelho<br>Cláudia Torres Codeço
<h2>Translations:</h2>
<h3>French:</h3>
Yann Chemin
<h2>Traducciones:</h2><h3>Francés:</h3>Yann Chemin<h3>Español:</h3>Ignacio Serrano Ayllón
<b>Epigrass</b>:
<b>EPI</b>demiological
<b>G</b>eo-<b>R</b>eferenced
<b>A</b>nalysis and
<b>S</b>imulation
<b>S</b>ystem
<b>Epigrass</b>:<b>EPI</b>demiological <b>G</b>eo-<b>R</b>eferenced <b>A</b>nalysis and <b>S</b>imulation <b>S</b>ystem
GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
The licenses for most software are designed to take away your
freedom to share and change it. By contrast, the GNU General Public
License is intended to guarantee your freedom to share and change free
software--to make sure the software is free for all its users. This
General Public License applies to most of the Free Software
Foundation's software and to any other program whose authors commit to
using it. (Some other Free Software Foundation software is covered by
the GNU Library General Public License instead.) You can apply it to
your programs, too.
When we speak of free software, we are referring to freedom, not
price. Our General Public Licenses are designed to make sure that you
have the freedom to distribute copies of free software (and charge for
this service if you wish), that you receive source code or can get it
if you want it, that you can change the software or use pieces of it
in new free programs; and that you know you can do these things.
To protect your rights, we need to make restrictions that forbid
anyone to deny you these rights or to ask you to surrender the rights.
These restrictions translate to certain responsibilities for you if you
distribute copies of the software, or if you modify it.
For example, if you distribute copies of such a program, whether
gratis or for a fee, you must give the recipients all the rights that
you have. You must make sure that they, too, receive or can get the
source code. And you must show them these terms so they know their
rights.
We protect your rights with two steps: (1) copyright the software, and
(2) offer you this license which gives you legal permission to copy,
distribute and/or modify the software.
Also, for each author's protection and ours, we want to make certain
that everyone understands that there is no warranty for this free
software. If the software is modified by someone else and passed on, we
want its recipients to know that what they have is not the original, so
that any problems introduced by others will not reflect on the original
authors' reputations.
Finally, any free program is threatened constantly by software
patents. We wish to avoid the danger that redistributors of a free
program will individually obtain patent licenses, in effect making the
program proprietary. To prevent this, we have made it clear that any
patent must be licensed for everyone's free use or not licensed at all.
The precise terms and conditions for copying, distribution and
modification follow.
GNU GENERAL PUBLIC LICENSE
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
0. This License applies to any program or other work which contains
a notice placed by the copyright holder saying it may be distributed
under the terms of this General Public License. The "Program", below,
refers to any such program or work, and a "work based on the Program"
means either the Program or any derivative work under copyright law:
that is to say, a work containing the Program or a portion of it,
either verbatim or with modifications and/or translated into another
language. (Hereinafter, translation is included without limitation in
the term "modification".) Each licensee is addressed as "you".
Activities other than copying, distribution and modification are not
covered by this License; they are outside its scope. The act of
running the Program is not restricted, and the output from the Program
is covered only if its contents constitute a work based on the
Program (independent of having been made by running the Program).
Whether that is true depends on what the Program does.
1. You may copy and distribute verbatim copies of the Program's
source code as you receive it, in any medium, provided that you
conspicuously and appropriately publish on each copy an appropriate
copyright notice and disclaimer of warranty; keep intact all the
notices that refer to this License and to the absence of any warranty;
and give any other recipients of the Program a copy of this License
along with the Program.
You may charge a fee for the physical act of transferring a copy, and
you may at your option offer warranty protection in exchange for a fee.
2. You may modify your copy or copies of the Program or any portion
of it, thus forming a work based on the Program, and copy and
distribute such modifications or work under the terms of Section 1
above, provided that you also meet all of these conditions:
a) You must cause the modified files to carry prominent notices
stating that you changed the files and the date of any change.
b) You must cause any work that you distribute or publish, that in
whole or in part contains or is derived from the Program or any
part thereof, to be licensed as a whole at no charge to all third
parties under the terms of this License.
c) If the modified program normally reads commands interactively
when run, you must cause it, when started running for such
interactive use in the most ordinary way, to print or display an
announcement including an appropriate copyright notice and a
notice that there is no warranty (or else, saying that you provide
a warranty) and that users may redistribute the program under
these conditions, and telling the user how to view a copy of this
License. (Exception: if the Program itself is interactive but
does not normally print such an announcement, your work based on
the Program is not required to print an announcement.)
These requirements apply to the modified work as a whole. If
identifiable sections of that work are not derived from the Program,
and can be reasonably considered independent and separate works in
themselves, then this License, and its terms, do not apply to those
sections when you distribute them as separate works. But when you
distribute the same sections as part of a whole which is a work based
on the Program, the distribution of the whole must be on the terms of
this License, whose permissions for other licensees extend to the
entire whole, and thus to each and every part regardless of who wrote it.
Thus, it is not the intent of this section to claim rights or contest
your rights to work written entirely by you; rather, the intent is to
exercise the right to control the distribution of derivative or
collective works based on the Program.
In addition, mere aggregation of another work not based on the Program
with the Program (or with a work based on the Program) on a volume of
a storage or distribution medium does not bring the other work under
the scope of this License.
3. You may copy and distribute the Program (or a work based on it,
under Section 2) in object code or executable form under the terms of
Sections 1 and 2 above provided that you also do one of the following:
a) Accompany it with the complete corresponding machine-readable
source code, which must be distributed under the terms of Sections
1 and 2 above on a medium customarily used for software interchange; or,
b) Accompany it with a written offer, valid for at least three
years, to give any third party, for a charge no more than your
cost of physically performing source distribution, a complete
machine-readable copy of the corresponding source code, to be
distributed under the terms of Sections 1 and 2 above on a medium
customarily used for software interchange; or,
c) Accompany it with the information you received as to the offer
to distribute corresponding source code. (This alternative is
allowed only for noncommercial distribution and only if you
received the program in object code or executable form with such
an offer, in accord with Subsection b above.)
The source code for a work means the preferred form of the work for
making modifications to it. For an executable work, complete source
code means all the source code for all modules it contains, plus any
associated interface definition files, plus the scripts used to
control compilation and installation of the executable. However, as a
special exception, the source code distributed need not include
anything that is normally distributed (in either source or binary
form) with the major components (compiler, kernel, and so on) of the
operating system on which the executable runs, unless that component
itself accompanies the executable.
If distribution of executable or object code is made by offering
access to copy from a designated place, then offering equivalent
access to copy the source code from the same place counts as
distribution of the source code, even though third parties are not
compelled to copy the source along with the object code.
4. You may not copy, modify, sublicense, or distribute the Program
except as expressly provided under this License. Any attempt
otherwise to copy, modify, sublicense or distribute the Program is
void, and will automatically terminate your rights under this License.
However, parties who have received copies, or rights, from you under
this License will not have their licenses terminated so long as such
parties remain in full compliance.
5. You are not required to accept this License, since you have not
signed it. However, nothing else grants you permission to modify or
distribute the Program or its derivative works. These actions are
prohibited by law if you do not accept this License. Therefore, by
modifying or distributing the Program (or any work based on the
Program), you indicate your acceptance of this License to do so, and
all its terms and conditions for copying, distributing or modifying
the Program or works based on it.
6. Each time you redistribute the Program (or any work based on the
Program), the recipient automatically receives a license from the
original licensor to copy, distribute or modify the Program subject to
these terms and conditions. You may not impose any further
restrictions on the recipients' exercise of the rights granted herein.
You are not responsible for enforcing compliance by third parties to
this License.
7. If, as a consequence of a court judgment or allegation of patent
infringement or for any other reason (not limited to patent issues),
conditions are imposed on you (whether by court order, agreement or
otherwise) that contradict the conditions of this License, they do not
excuse you from the conditions of this License. If you cannot
distribute so as to satisfy simultaneously your obligations under this
License and any other pertinent obligations, then as a consequence you
may not distribute the Program at all. For example, if a patent
license would not permit royalty-free redistribution of the Program by
all those who receive copies directly or indirectly through you, then
the only way you could satisfy both it and this License would be to
refrain entirely from distribution of the Program.
If any portion of this section is held invalid or unenforceable under
any particular circumstance, the balance of the section is intended to
apply and the section as a whole is intended to apply in other
circumstances.
It is not the purpose of this section to induce you to infringe any
patents or other property right claims or to contest validity of any
such claims; this section has the sole purpose of protecting the
integrity of the free software distribution system, which is
implemented by public license practices. Many people have made
generous contributions to the wide range of software distributed
through that system in reliance on consistent application of that
system; it is up to the author/donor to decide if he or she is willing
to distribute software through any other system and a licensee cannot
impose that choice.
This section is intended to make thoroughly clear what is believed to
be a consequence of the rest of this License.
8. If the distribution and/or use of the Program is restricted in
certain countries either by patents or by copyrighted interfaces, the
original copyright holder who places the Program under this License
may add an explicit geographical distribution limitation excluding
those countries, so that distribution is permitted only in or among
countries not thus excluded. In such case, this License incorporates
the limitation as if written in the body of this License.
9. The Free Software Foundation may publish revised and/or new versions
of the General Public License from time to time. Such new versions will
be similar in spirit to the present version, but may differ in detail to
address new problems or concerns.
Each version is given a distinguishing version number. If the Program
specifies a version number of this License which applies to it and "any
later version", you have the option of following the terms and conditions
either of that version or of any later version published by the Free
Software Foundation. If the Program does not specify a version number of
this License, you may choose any version ever published by the Free Software
Foundation.
10. If you wish to incorporate parts of the Program into other free
programs whose distribution conditions are different, write to the author
to ask for permission. For software which is copyrighted by the Free
Software Foundation, write to the Free Software Foundation; we sometimes
make exceptions for this. Our decision will be guided by the two goals
of preserving the free status of all derivatives of our free software and
of promoting the sharing and reuse of software generally.
NO WARRANTY
11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
REPAIR OR CORRECTION.
12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) <year> <name of author>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) year name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
<signature of Ty Coon>, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.
GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away yourfreedom to share and change it. By contrast, the GNU General PublicLicense is intended to guarantee your freedom to share and change freesoftware--to make sure the software is free for all its users. ThisGeneral Public License applies to most of the Free SoftwareFoundation's software and to any other program whose authors commit tousing it. (Some other Free Software Foundation software is covered bythe GNU Library General Public License instead.) You can apply it toyour programs, too. When we speak of free software, we are referring to freedom, notprice. Our General Public Licenses are designed to make sure that youhave the freedom to distribute copies of free software (and charge forthis service if you wish), that you receive source code or can get itif you want it, that you can change the software or use pieces of itin new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbidanyone to deny you these rights or to ask you to surrender the rights.These restrictions translate to certain responsibilities for you if youdistribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whethergratis or for a fee, you must give the recipients all the rights thatyou have. You must make sure that they, too, receive or can get thesource code. And you must show them these terms so they know theirrights. We protect your rights with two steps: (1) copyright the software, and(2) offer you this license which gives you legal permission to copy,distribute and/or modify the software. Also, for each author's protection and ours, we want to make certainthat everyone understands that there is no warranty for this freesoftware. If the software is modified by someone else and passed on, wewant its recipients to know that what they have is not the original, sothat any problems introduced by others will not reflect on the originalauthors' reputations. Finally, any free program is threatened constantly by softwarepatents. We wish to avoid the danger that redistributors of a freeprogram will individually obtain patent licenses, in effect making theprogram proprietary. To prevent this, we have made it clear that anypatent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution andmodification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which containsa notice placed by the copyright holder saying it may be distributedunder the terms of this General Public License. The "Program", below,refers to any such program or work, and a "work based on the Program"means either the Program or any derivative work under copyright law:that is to say, a work containing the Program or a portion of it,either verbatim or with modifications and/or translated into anotherlanguage. (Hereinafter, translation is included without limitation inthe term "modification".) Each licensee is addressed as "you".Activities other than copying, distribution and modification are notcovered by this License; they are outside its scope. The act ofrunning the Program is not restricted, and the output from the Programis covered only if its contents constitute a work based on theProgram (independent of having been made by running the Program).Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program'ssource code as you receive it, in any medium, provided that youconspicuously and appropriately publish on each copy an appropriatecopyright notice and disclaimer of warranty; keep intact all thenotices that refer to this License and to the absence of any warranty;and give any other recipients of the Program a copy of this Licensealong with the Program.You may charge a fee for the physical act of transferring a copy, andyou may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portionof it, thus forming a work based on the Program, and copy anddistribute such modifications or work under the terms of Section 1above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.)These requirements apply to the modified work as a whole. Ifidentifiable sections of that work are not derived from the Program,and can be reasonably considered independent and separate works inthemselves, then this License, and its terms, do not apply to thosesections when you distribute them as separate works. But when youdistribute the same sections as part of a whole which is a work basedon the Program, the distribution of the whole must be on the terms ofthis License, whose permissions for other licensees extend to theentire whole, and thus to each and every part regardless of who wrote it.Thus, it is not the intent of this section to claim rights or contestyour rights to work written entirely by you; rather, the intent is toexercise the right to control the distribution of derivative orcollective works based on the Program.In addition, mere aggregation of another work not based on the Programwith the Program (or with a work based on the Program) on a volume ofa storage or distribution medium does not bring the other work underthe scope of this License. 3. You may copy and distribute the Program (or a work based on it,under Section 2) in object code or executable form under the terms ofSections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.)The source code for a work means the preferred form of the work formaking modifications to it. For an executable work, complete sourcecode means all the source code for all modules it contains, plus anyassociated interface definition files, plus the scripts used tocontrol compilation and installation of the executable. However, as aspecial exception, the source code distributed need not includeanything that is normally distributed (in either source or binaryform) with the major components (compiler, kernel, and so on) of theoperating system on which the executable runs, unless that componentitself accompanies the executable.If distribution of executable or object code is made by offeringaccess to copy from a designated place, then offering equivalentaccess to copy the source code from the same place counts asdistribution of the source code, even though third parties are notcompelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Programexcept as expressly provided under this License. Any attemptotherwise to copy, modify, sublicense or distribute the Program isvoid, and will automatically terminate your rights under this License.However, parties who have received copies, or rights, from you underthis License will not have their licenses terminated so long as suchparties remain in full compliance. 5. You are not required to accept this License, since you have notsigned it. However, nothing else grants you permission to modify ordistribute the Program or its derivative works. These actions areprohibited by law if you do not accept this License. Therefore, bymodifying or distributing the Program (or any work based on theProgram), you indicate your acceptance of this License to do so, andall its terms and conditions for copying, distributing or modifyingthe Program or works based on it. 6. Each time you redistribute the Program (or any work based on theProgram), the recipient automatically receives a license from theoriginal licensor to copy, distribute or modify the Program subject tothese terms and conditions. You may not impose any furtherrestrictions on the recipients' exercise of the rights granted herein.You are not responsible for enforcing compliance by third parties tothis License. 7. If, as a consequence of a court judgment or allegation of patentinfringement or for any other reason (not limited to patent issues),conditions are imposed on you (whether by court order, agreement orotherwise) that contradict the conditions of this License, they do notexcuse you from the conditions of this License. If you cannotdistribute so as to satisfy simultaneously your obligations under thisLicense and any other pertinent obligations, then as a consequence youmay not distribute the Program at all. For example, if a patentlicense would not permit royalty-free redistribution of the Program byall those who receive copies directly or indirectly through you, thenthe only way you could satisfy both it and this License would be torefrain entirely from distribution of the Program.If any portion of this section is held invalid or unenforceable underany particular circumstance, the balance of the section is intended toapply and the section as a whole is intended to apply in othercircumstances.It is not the purpose of this section to induce you to infringe anypatents or other property right claims or to contest validity of anysuch claims; this section has the sole purpose of protecting theintegrity of the free software distribution system, which isimplemented by public license practices. Many people have madegenerous contributions to the wide range of software distributedthrough that system in reliance on consistent application of thatsystem; it is up to the author/donor to decide if he or she is willingto distribute software through any other system and a licensee cannotimpose that choice.This section is intended to make thoroughly clear what is believed tobe a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted incertain countries either by patents or by copyrighted interfaces, theoriginal copyright holder who places the Program under this Licensemay add an explicit geographical distribution limitation excludingthose countries, so that distribution is permitted only in or amongcountries not thus excluded. In such case, this License incorporatesthe limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versionsof the General Public License from time to time. Such new versions willbe similar in spirit to the present version, but may differ in detail toaddress new problems or concerns.Each version is given a distinguishing version number. If the Programspecifies a version number of this License which applies to it and "anylater version", you have the option of following the terms and conditionseither of that version or of any later version published by the FreeSoftware Foundation. If the Program does not specify a version number ofthis License, you may choose any version ever published by the Free SoftwareFoundation. 10. If you wish to incorporate parts of the Program into other freeprograms whose distribution conditions are different, write to the authorto ask for permission. For software which is copyrighted by the FreeSoftware Foundation, write to the Free Software Foundation; we sometimesmake exceptions for this. Our decision will be guided by the two goalsof preserving the free status of all derivatives of our free software andof promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTYFOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHENOTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIESPROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSEDOR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OFMERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK ASTO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THEPROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITINGWILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/ORREDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISINGOUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITEDTO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BYYOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHERPROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THEPOSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatestpossible use to the public, the best way to achieve this is to make itfree software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safestto attach them to the start of each source file to most effectivelyconvey the exclusion of warranty; and each file should have at leastthe "copyright" line and a pointer to where the full notice is found. <one line to give the program's name and a brief idea of what it does.> Copyright (C) <year> <name of author> This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USAAlso add information on how to contact you by electronic and paper mail.If the program is interactive, make it output a short notice like thiswhen it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details.The hypothetical commands `show w' and `show c' should show the appropriateparts of the General Public License. Of course, the commands you use maybe called something other than `show w' and `show c'; they could even bemouse-clicks or menu items--whatever suits your program.You should also get your employer (if you work as a programmer) or yourschool, if any, to sign a "copyright disclaimer" for the program, ifnecessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. <signature of Ty Coon>, 1 April 1989 Ty Coon, President of ViceThis General Public License does not permit incorporating your program intoproprietary programs. If your program is a subroutine library, you mayconsider it more useful to permit linking proprietary applications with thelibrary. If this is what you want to do, use the GNU Library GeneralPublic License instead of this License.
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">This is Epigrass version 2.0a1<br /><br />More information about Epigrass can be found at the epigrass </span><a href="http://epigrass.sourceforge.net"><span style=" font-weight:600; text-decoration: underline; color:#0057ae;">website</span></a></p></body></html>
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p style=" margin-top:18px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:xx-large; font-weight:600;"><span style=" font-size:xx-large;">Developers:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Flávio Codeço Coelho<br />Cláudia Torres Codeço </p></body></html>
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<p style=" margin-top:16px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:x-large; font-weight:600;"><span style=" font-size:x-large;">Translations:</span></p>
<p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">French:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Yann Chemin </p>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:12pt; font-weight:600;">Spanish:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-weight:600;"><span style=" font-weight:400;">Naco Serrano</span></p></body></html>
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<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. </p></body></html>
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M y S Q L MySQL MainPanel N o m Name MainPanel P a s d e c a r t e No map MainPanel O u v r i r Open MainPanel " V i s u a l i s a t e u r P D F
PDF Viewer MainPanel M o t d e p a s s e : Password: MainPanel
P o r t : Port: MainPanel P r o g r e s s i o n : Progress: MainPanel R a p p o r t Report MainPanel ( O p t i o n s d e l a n c e m e n t Run Options MainPanel S Q L i t e SQLite MainPanel D R e c h e r c h e r d a n s l a B a s e d e d o n n e s Scan DB MainPanel N o m d u S c r i p t : Script Name: MainPanel f S l e c t i o n n e z u n e s i m u l a t i o n d a n s l a b a s e d e d o n n e s #Select a database stored simulation MainPanel S l e c t i o n n e z u n r p e r t o i r e a v e c f i c h i e r s d ' a r b o r e s c e n c e p o u r y c o n s t r u i r e l a c o n c o r d a n c e . 9Select a directory with tree-files to build consensus on. MainPanel , S l e c t i o n n e z u n e c a r t e Select a map MainPanel f S l e c t i o n n e z u n e v a r i a b l e v i s u a l i s e r e n a n i m a t i o n -Select a variable to display in the animation MainPanel j S l e c t i o n n e z v o t r e l a n g u a g e d ' i n t e r f a c e d ' u t i l i s a t e u r Select the language for the GUI MainPanel T S l e c t i o n n e z v o t r e t y p e d e b a s e d e d o n n e s Select your database type MainPanel P a r a m t r e s Settings MainPanel * E t a t d e l a s i m u l a t i o n Simulation Status MainPanel & E t a p e d e s i m u l a t i o n Simulation step MainPanel H S i m u l a t i o n s d a n s l a b a s e d e d o n n e s : Simulations stored: MainPanel ( D v e l o p p e l e s A r b r e s Spread Trees MainPanel Start 2D animation MainPanel Start 3D animation MainPanel P C e c i e s t l ' U R L d e v o t r e b a s e d e d o n n e s . (This is the url of your database server. MainPanel z C e c i e s t l ' i d e n t i f i a n t d ' u t i l i s a t e u r d e v o t r e b a s e d e d o n n e s 4This is the userid for accessing the database server MainPanel 4 I d e n t i f i a n t d ' u t i l i s a t e u r : Userid: MainPanel U t i l i t a i r e s Utilities MainPanel , V a r i a b l e v i s u a l i s e r : Variable to display: MainPanel V i s u a l i s e r
Visualization MainPanel l o c a l h o s t localhost MainPanel E c r i v e z l e n o m d e v o t r e s c r i p t o u a p p u y e z l e b o u t t o n " c h o i s i r " s u r v o t r e d r o i t e p o u r e n s e l e c t i o n n e r u n . Xwrite the name of the your script or press the choose button on the right to select one. MainPanel & A p r o p o s &About
MainWindow & S o r t i r &Exit
MainWindow
& A i d e &Help
MainWindow &New
MainWindow &Open .epg File
MainWindow &Refresh
MainWindow & L a n c e r &Run
MainWindow &Save
MainWindow E d i t e u r d e . E P G .EPG Editor
MainWindow 3 3 0 6 3306
MainWindow qLeave the editor.
MainWindow iSave file
MainWindow ( A p r o p o s d ' & E p i g r a s s About &Epigrass
MainWindow Add variable
MainWindow
A l t + E Alt+E
MainWindow
A l t + R Alt+R
MainWindow Animation rate
MainWindow
Auto-&Refresh
MainWindow S a u v e g a r d e Backup
MainWindow ( P o r t u g u a i s B r s i l i e n Brazilian portuguese
MainWindow C S V CSV
MainWindow C h o i s i r Choose
MainWindow VClick and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys
MainWindow C l i q u e z i c i p o u r u n e c o u r t e d e s c r i p t i o n d e l a b a s e d e d o n n e s d ' E p i g r a s s ;Click here for a short description of the epigrass database
MainWindow C l i q u e z i c i p o u r u n e s a u v e g a r d e d e l a b a s e d e d o n n e s d ' E p i g r a s s +Click here to backup the epigrass database
MainWindow D C l i q u e z i c i p o u r s o r t i r d ' E p i g r a s s Click here to leave Epigrass
MainWindow C l i q u e z i c i p o u r o u v r i r l e m a n u e l d ' u t i l i s a t e u r d a n s l e n a v i g a t e u r d ' I n t e r n e t 3Click here to open the userguide in the web browser
MainWindow T C l i q u e z i c i p o u r d e m a r r e r v o t r e s i m u l a t i o n #Click here to start your simulation
MainWindow ( A r b r e d e c o n c o r d a n c e Consensus Tree
MainWindow Ctrl+N
MainWindow C t r l + O Ctrl+O
MainWindow C t r l + R Ctrl+R
MainWindow C t r l + S Ctrl+S
MainWindow Ctrl+X
MainWindow B a s e d e d o n n e s Database
MainWindow : P a r a m t r e s d e b a s e d e d o n n e s Database Specification
MainWindow M o t d e p a s s e d e b a s e d e d o n n e s e n t r p o u r l ' i d e n t i t d e l ' u t l i s a t e u r (Database password for the userid entered
MainWindow 0 T y p e d e b a s e d e d o n n e s : Database type:
MainWindow Description
MainWindow E&xit
MainWindow E d i t e z Edit
MainWindow E d i t e u r Editor
MainWindow A n g l a i s English
MainWindow f E n t r e z l e n o m d e v o t r e v i s u a l i s a t e u r d e P D F p r f r +Enter the name of your preferred PDF viewer
MainWindow F E n t r e z l e p o r t d ' c o u t e d u s e r v e u r . &Enter the port the server listens to.
MainWindow h E n t r e z v o t r e n o m c o m p l e t . C e s e r a a j o u t a u r a p p o r t . 7Enter your full name. This will be added to the report.
MainWindow J E n t r e z v o t r e d i t e u r d e t e x t e p r f r Enter your preferred text editor
MainWindow Epigrass
MainWindow S o r t i r Exit
MainWindow F 1 F1
MainWindow File
MainWindow F r a n a i s French
MainWindow A i d e Help
MainWindow C e n t r e s e r v e u r : Host:
MainWindow I n f o r m a t i o n Info
MainWindow L a n g u e Language
MainWindow & C a r t e s d i s p o n i b l e s : Maps available:
MainWindow ( P a r a m t r e s d u m o d l e Model Specification
MainWindow
M y S Q L MySQL
MainWindow N o m Name
MainWindow P a s d e c a r t e No map
MainWindow O u v r i r Open
MainWindow " V i s u a l i s a t e u r P D F
PDF Viewer
MainWindow M o t d e p a s s e : Password:
MainWindow
P o r t : Port:
MainWindow P r o g r e s s i o n : Progress:
MainWindow R a p p o r t Report
MainWindow ( O p t i o n s d e l a n c e m e n t Run Options
MainWindow S Q L i t e SQLite
MainWindow D R e c h e r c h e r d a n s l a B a s e d e d o n n e s Scan DB
MainWindow N o m d u S c r i p t : Script Name:
MainWindow f S l e c t i o n n e z u n e s i m u l a t i o n d a n s l a b a s e d e d o n n e s #Select a database stored simulation
MainWindow S l e c t i o n n e z u n r p e r t o i r e a v e c f i c h i e r s d ' a r b o r e s c e n c e p o u r y c o n s t r u i r e l a c o n c o r d a n c e . 9Select a directory with tree-files to build consensus on.
MainWindow , S l e c t i o n n e z u n e c a r t e Select a map
MainWindow f S l e c t i o n n e z u n e v a r i a b l e v i s u a l i s e r e n a n i m a t i o n -Select a variable to display in the animation
MainWindow j S l e c t i o n n e z v o t r e l a n g u a g e d ' i n t e r f a c e d ' u t i l i s a t e u r Select the language for the GUI
MainWindow T S l e c t i o n n e z v o t r e t y p e d e b a s e d e d o n n e s Select your database type
MainWindow P a r a m t r e s Settings
MainWindow Simulation Display
MainWindow * E t a t d e l a s i m u l a t i o n Simulation Status
MainWindow & E t a p e d e s i m u l a t i o n Simulation step
MainWindow H S i m u l a t i o n s d a n s l a b a s e d e d o n n e s : Simulations stored:
MainWindow Spanish
MainWindow ( D v e l o p p e l e s A r b r e s Spread Trees
MainWindow Start animation
MainWindow P C e c i e s t l ' U R L d e v o t r e b a s e d e d o n n e s . (This is the url of your database server.
MainWindow z C e c i e s t l ' i d e n t i f i a n t d ' u t i l i s a t e u r d e v o t r e b a s e d e d o n n e s 4This is the userid for accessing the database server
MainWindow Time steps per second
MainWindow
Usage help
MainWindow 4 I d e n t i f i a n t d ' u t i l i s a t e u r : Userid:
MainWindow U t i l i t a i r e s Utilities
MainWindow Value
MainWindow V a r i a b l e Variable
MainWindow , V a r i a b l e v i s u a l i s e r : Variable to display:
MainWindow V i s u a l i s a t e u r Viewer
MainWindow V i s u a l i s e r
Visualization
MainWindow l o c a l h o s t localhost
MainWindow E c r i v e z l e n o m d e v o t r e s c r i p t o u a p p u y e z l e b o u t t o n " c h o i s i r " s u r v o t r e d r o i t e p o u r e n s e l e c t i o n n e r u n . Xwrite the name of the your script or press the choose button on the right to select one.
MainWindow & O K &OK MainWindow_Impl
* . e p g *.epg MainWindow_Impl . S o u t i e n d e r a m i f i c a t i o n Branch Support MainWindow_Impl I m p o s s i b l e d ' o u v r i r l e r a p p o r t .
A s s u r e z - v o u s q u e v o u s l ' a v e z c r . ;Could not open the report.
Make sure you have generated it. MainWindow_Impl R P o u r l ' i n s t a n t , l a s a u v e g a r d e d e l a b a s e d e d o n n e s
f o n c t i o n n e s e u l e m e n t s u r s e r v e u r s l o c a u x . ]Currently, the database backup function only
works on local database servers. MainWindow_Impl N E d i t e u r o u S c r i p t n ' e s t p a s s l e c t i o n n Editor or Script not selected MainWindow_Impl * T a b l e d e d o n n e s v i d e Empty Table MainWindow_Impl E n t r e z l e n i v e a u m i n i m u m d e s o u t i e n d e r a m i f i c a t i o n v i s u a l i s e r : .Enter minimum branch support level to display: MainWindow_Impl 0 C o n f i g u r a t i o n I n c o m p l t e Incomplete Configuration MainWindow_Impl P M o t d e p a s s e d e b a s e d e d o n n e s m a n q u a n t Missing Database Password MainWindow_Impl P a s d e R a p p o r t No Report MainWindow_Impl 2 B a s e d e d o n n e s n o n - l o c a l Non-local Database Server MainWindow_Impl UPlease check file .epigrassrc for missing %s keyword
from section %s MainWindow_Impl Please enter a value for %s. MainWindow_Impl )Please enter password for MySQL database. MainWindow_Impl BPlease enter the password for the MySQL database in the first tab. MainWindow_Impl S V P a s s u r e z - v o u s q u e v o u s a v e z s l e c t i o n n e z e n s e m b l e
u n d i t e u r e t l e s c r i p t d e v o t r e m o d l e . JPlease make sure you have selected both
an editor and your model's script. MainWindow_Impl 4 R e c u p r e l e s i n s t r u c t i o n s : Restore Instructions: MainWindow_Impl S l e c t i o n n e z u n r p e r t o i r e a v e c f i c h i e r s d ' a r b o r e s c e n c e ( e p i p a t h * . c s v ) /Select Directory with Tree Files (epipath*.csv) MainWindow_Impl N S l e c t i o n n e z l e S c r i p t d e v o t r e M o d l e Select your Model's Script MainWindow_Impl " E r r e u r d e s y n t a x e Syntax Error MainWindow_Impl L a s a u v e g a r d e d e l a b a s e d e d o n n e s E p i g r a s s a t f a i t e
d a n s u n f i c h i e r a p p e l " e p i g r a s s . s q l " .
C e f i c h i e r e s t d a n s v o t r e r p e r t o i r e d e t r a v a i l a c t u e l .
P o u r r c u p r e r l a b a s e d e d o n n e s , c r i v e z :
e p i g r a s s . s q l > m y s q l The epigrass database has been Backed up
to a file named "epigrass.sql".
This file is in you current working directory.
To restore the database type:
epigrass.sql > mysql MainWindow_Impl V o u s a v e z s e l e c t i o n n u n e t a b l e d e d o n n e s v i d e .
S V P s e l e c t i o n n e z u n e a u t r e t a b l e d e d o n n e s p a r t i r d u m e n u . LYou have selected an empty table.
Please select another table from the menu. MainWindow_Impl Fx GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
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To protect your rights, we need to make restrictions that forbid
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We protect your rights with two steps: (1) copyright the software, and
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GNU GENERAL PUBLIC LICENSE
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
0. This License applies to any program or other work which contains
a notice placed by the copyright holder saying it may be distributed
under the terms of this General Public License. The "Program", below,
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the term "modification".) Each licensee is addressed as "you".
Activities other than copying, distribution and modification are not
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You may charge a fee for the physical act of transferring a copy, and
you may at your option offer warranty protection in exchange for a fee.
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END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
Copyright (C)
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) year name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.
aboutDialog & F e r m e r &Close aboutDialog
This is Epigrass version 2.0a1 website
aboutDialog E
GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License.
aboutDialog
Translations:
French:
Yann Chemin
Spanish:
Naco Serrano
aboutDialog
Developers:
Flávio Codeço Coelho
aboutDialog X < b > E p i g r a s s < / b > : ( n e w l i n e )
< b > E P I < / b > d m i o l o g i c a l ( n e w l i n e )
< b > G < / b > o - < b > R < / b > f e r e n c ( n e w l i n e )
< b > A < / b > n a l y s e e t ( n e w l i n e )
< b > S < / b > i m u l a t i o n ( n e w l i n e )
< b > S < / b > y s t m e |Epigrass :
EPI demiological
G eo-R eferenced
A nalysis and
S imulation
S ystem aboutDialog < h 1 > D v e l o p p e u r s : < / h 1 > ( n e w l i n e )
F l & a a c u t e ; v i o C o d e & c c e d i l ; o C o e l h o < b r > ( n e w l i n e )
C l & a a c u t e ; u d i a T o r r e s C o d e & c c e d i l ; o ( n e w l i n e ) `Developers:
Flávio Codeço CoelhoTranslations:
French:
Yann Chemin
aboutDialog $Epigrass :
EPI demiological
G eo-R eferenced
A nalysis and
S imulation
S ystem
aboutDialog uThis is Epigrass version 1.5.0 website
aboutDialog EGNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License.
aboutDialog Translations:
French:
Yann Chemin
aboutDialog lDevelopers:
Flávio Codeço Coelho
aboutDialog This is Epigrass version
1.5.0website aboutDialog A p r o p o s About aboutDialog & A p r o p o s d ' E p i g r a s s About Epigrass aboutDialog R e m e r c i e m e n t s Acknowledgements aboutDialog
A l t + C Alt+C aboutDialog A u t e u r s Authors aboutDialog L i c e n c e License aboutDialog r P o u r u t i l i s e r E p i g r a s s , v o u s d e v e z a c c e p t e r c e t t e l i c e n c e 3To use Epigrass you have to agree with this license aboutDialog epigrass-2.4.7/Epigrass/epigrass_fr.ts 0000664 0000000 0000000 00000334176 12720633740 017754 0 ustar root root 0000000 0000000
Editor
Required variable missing
Variable %s was missing. Variable created and value set to default
Required section missing
Section %s was missing. It was added to your file with default values for its variables.
Open .epg File
*.epg
*.epg
About .EPG Editor
A propos d'Editeur de .EPG
This editor is for creating or modifying .epg files.
File Name
Enter a name for you new .epg file:
Choose Section
Select a section to which you want to add a variable:
Variable Name
Nom de variable
Enter the name of the variable to be created
Save File as
Form
Simulation Display
Geographical View
Time Series
Replay
Stop
GraphWidget
Network View
Click and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys
MainPanel
Epigrass Control Panel
Panneau de Controle d'Epigrass
&Help
&Aide
F1
F1
Click here to open the userguide in the web browser
Cliquez ici pour ouvrir le manuel d'utilisateur dans le navigateur d'Internet
&Run
&Lancer
Alt+R
Alt+R
Click here to start your simulation
Cliquez ici pour demarrer votre simulation
&Exit
&Sortir
Alt+E
Alt+E
Click here to leave Epigrass
Cliquez ici pour sortir d'Epigrass
Progress:
Progression:
Simulation step
Etape de simulation
Model Specification
Paramètres du modèle
Script Name:
Nom du Script:
write the name of the your script or press the choose button on the right to select one.
Ecrivez le nom de votre script ou appuyez le boutton "choisir" sur votre droite pour en selectionner un.
Choose
Choisir
Edit
Editez
Database type:
Type de base de données:
MySQL
MySQL
SQLite
SQLite
Select your database type
Sélectionnez votre type de base de données
Database Specification
Paramètres de base de données
Host:
Centre serveur:
3306
3306
Enter the port the server listens to.
Entrez le port d'écoute du serveur.
Port:
Port:
Database password for the userid entered
Mot de passe de base de données entré pour l'identité de l'utlisateur
Password:
Mot de passe:
Userid:
Identifiant d'utilisateur:
localhost
localhost
This is the url of your database server.
Ceci est l'URL de votre base de données.
This is the userid for accessing the database server
Ceci est l'identifiant d'utilisateur de votre base de données
Run Options
Options de lancement
Editor
Editeur
Name
Nom
Enter your full name. This will be added to the report.
Entrez votre nom complet. Ce sera ajouté au rapport.
Enter your preferred text editor
Entrez votre éditeur de texte préféré
Brazilian portuguese
Portuguais Brésilien
Select the language for the GUI
Sélectionnez votre language d'interface d'utilisateur
Language
Langue
Enter the name of your preferred PDF viewer
Entrez le nom de votre visualisateur de PDF préféré
PDF Viewer
Visualisateur PDF
Settings
Paramètres
Open
Ouvrir
Simulation Status
Etat de la simulation
Database
Base de données
Report
Rapport
Info
Information
Click here for a short description of the epigrass database
Cliquez ici pour une courte description de la base de données d'Epigrass
Backup
Sauvegarde
Click here to backup the epigrass database
Cliquez ici pour une sauvegarde de la base de données d'Epigrass
Utilities
Utilitaires
Consensus Tree
Arbre de concordance
Select a directory with tree-files to build consensus on.
Sélectionnez un répertoire avec fichiers d'arborescence pour y construire la concordance.
Spread Trees
Développe les Arbres
Maps available:
Cartes disponibles:
Variable to display:
Variable à visualiser:
Select a database stored simulation
Sélectionnez une simulation dans la base de données
Scan DB
Rechercher dans la Base de données
Simulations stored:
Simulations dans la base de données:
No map
Pas de carte
Select a map
Sélectionnez une carte
Select a variable to display in the animation
Sélectionnez une variable à visualiser en animation
Visualization
Visualiser
English
Anglais
French
Français
CSV
CSV
Animation rate
Start 2D animation
Start 3D animation
MainWindow
Simulation Display
Click and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys
.EPG Editor
Editeur de .EPG
Editor
Editeur
Variable
Variable
Value
Description
Open
Ouvrir
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Save file</p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Leave the editor.</p></body></html>
Exit
Sortir
Viewer
Visualisateur
Help
Aide
Usage help
File
&Help
&Aide
F1
F1
&About
&A propos
About &Epigrass
A propos d'&Epigrass
Auto-&Refresh
&Open .epg File
Ctrl+O
Ctrl+O
&Save
Ctrl+S
Ctrl+S
E&xit
&Refresh
Ctrl+R
Ctrl+R
Add variable
Ctrl+X
&New
Ctrl+N
Epigrass
Run Options
Options de lancement
Model Specification
Paramètres du modèle
Choose
Choisir
Script Name:
Nom du Script:
write the name of the your script or press the choose button on the right to select one.
Ecrivez le nom de votre script ou appuyez le boutton "choisir" sur votre droite pour en selectionner un.
Edit
Editez
Database Specification
Paramètres de base de données
Host:
Centre serveur:
Enter the port the server listens to.
Entrez le port d'écoute du serveur.
3306
3306
Port:
Port:
Database password for the userid entered
Mot de passe de base de données entré pour l'identité de l'utlisateur
Password:
Mot de passe:
Userid:
Identifiant d'utilisateur:
This is the url of your database server.
Ceci est l'URL de votre base de données.
localhost
localhost
This is the userid for accessing the database server
Ceci est l'identifiant d'utilisateur de votre base de données
Database type:
Type de base de données:
Select your database type
Sélectionnez votre type de base de données
MySQL
MySQL
SQLite
SQLite
CSV
CSV
Settings
Paramètres
Enter your full name. This will be added to the report.
Entrez votre nom complet. Ce sera ajouté au rapport.
Language
Langue
Select the language for the GUI
Sélectionnez votre language d'interface d'utilisateur
English
Anglais
Brazilian portuguese
Portuguais Brésilien
French
Français
Spanish
PDF Viewer
Visualisateur PDF
Name
Nom
Enter your preferred text editor
Entrez votre éditeur de texte préféré
Enter the name of your preferred PDF viewer
Entrez le nom de votre visualisateur de PDF préféré
Utilities
Utilitaires
Simulation Status
Etat de la simulation
Database
Base de données
Click here to backup the epigrass database
Cliquez ici pour une sauvegarde de la base de données d'Epigrass
Backup
Sauvegarde
Click here for a short description of the epigrass database
Cliquez ici pour une courte description de la base de données d'Epigrass
Info
Information
Report
Rapport
Visualization
Visualiser
Spread Trees
Développe les Arbres
Select a directory with tree-files to build consensus on.
Sélectionnez un répertoire avec fichiers d'arborescence pour y construire la concordance.
Consensus Tree
Arbre de concordance
Simulations stored:
Simulations dans la base de données:
Select a database stored simulation
Sélectionnez une simulation dans la base de données
Variable to display:
Variable à visualiser:
Select a variable to display in the animation
Sélectionnez une variable à visualiser en animation
Maps available:
Cartes disponibles:
Select a map
Sélectionnez une carte
No map
Pas de carte
Scan DB
Rechercher dans la Base de données
Animation rate
Time steps per second
Start animation
Progress:
Progression:
Simulation step
Etape de simulation
Click here to open the userguide in the web browser
Cliquez ici pour ouvrir le manuel d'utilisateur dans le navigateur d'Internet
Click here to start your simulation
Cliquez ici pour demarrer votre simulation
&Run
&Lancer
Alt+R
Alt+R
Click here to leave Epigrass
Cliquez ici pour sortir d'Epigrass
&Exit
&Sortir
Alt+E
Alt+E
MainWindow_Impl
Syntax Error
Erreur de syntaxe
Please check file .epigrassrc for missing %s keyword
from section %s
Incomplete Configuration
Configuration Incomplète
Please enter a value for %s.
&OK
&OK
Editor or Script not selected
Editeur ou Script n'est pas sélectionné
Please make sure you have selected both
an editor and your model's script.
SVP assurez-vous que vous avez sélectionnez ensemble
un éditeur et le script de votre modèle.
Select your Model's Script
Sélectionnez le Script de votre Modèle
*.epg
*.epg
Missing Database Password
Mot de passe de base de données manquant
Please enter password for MySQL database.
Non-local Database Server
Base de données non-local
Currently, the database backup function only
works on local database servers.
Pour l'instant, la sauvegarde de la base de données
fonctionne seulement sur serveurs locaux.
Restore Instructions:
Recupère les instructions:
The epigrass database has been Backed up
to a file named "epigrass.sql".
This file is in you current working directory.
To restore the database type:
epigrass.sql > mysql
La sauvegarde de la base de données Epigrass a été faite
dans un fichier appelé "epigrass.sql".
Ce fichier est dans votre répertoire de travail actuel.
Pour récupérer la base de données, écrivez:
epigrass.sql > mysql
No Report
Pas de Rapport
Could not open the report.
Make sure you have generated it.
Impossible d'ouvrir le rapport.
Assurez-vous que vous l'avez créé.
Please enter the password for the MySQL database in the first tab.
Empty Table
Table de données vide
You have selected an empty table.
Please select another table from the menu.
Vous avez selectionné une table de données vide.
SVP selectionnez une autre table de données à partir du menu.
Select Directory with Tree Files (epipath*.csv)
Sélectionnez un répertoire avec fichiers d'arborescence (epipath*.csv)
Branch Support
Soutien de ramification
Enter minimum branch support level to display:
Entrez le niveau minimum de soutien de ramification à visualiser:
aboutDialog
About Epigrass
A propos d'Epigrass
<b>Epigrass</b>:
<b>EPI</b>demiological
<b>G</b>eo-<b>R</b>eferenced
<b>A</b>nalysis and
<b>S</b>imulation
<b>S</b>ystem
<b>Epigrass</b>:(new line)
<b>EPI</b>démiological (new line)
<b>G</b>éo-<b>R</b>éferencé (new line)
<b>A</b>nalyse et (new line)
<b>S</b>imulation (new line)
<b>S</b>ystème
About
A propos
<h1>Developers:</h1>
Flávio Codeço Coelho<br>
Cláudia Torres Codeço
<h1>Développeurs:</h1>(new line)
Flávio Codeço Coelho<br>(new line)
Cláudia Torres Codeço(new line)
Authors
Auteurs
<h2>Translations:</h2>
<h3>French:</h3>
Yann Chemin
<h2>Traductions:</h2>(new line)
<h3>Français:</h3>(new line)
Yann Chemin(new line)
Acknowledgements
Remerciements
To use Epigrass you have to agree with this license
Pour utiliser Epigrass, vous devez accepter cette licence
License
Licence
&Close
&Fermer
Alt+C
Alt+C
GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
The licenses for most software are designed to take away your
freedom to share and change it. By contrast, the GNU General Public
License is intended to guarantee your freedom to share and change free
software--to make sure the software is free for all its users. This
General Public License applies to most of the Free Software
Foundation's software and to any other program whose authors commit to
using it. (Some other Free Software Foundation software is covered by
the GNU Library General Public License instead.) You can apply it to
your programs, too.
When we speak of free software, we are referring to freedom, not
price. Our General Public Licenses are designed to make sure that you
have the freedom to distribute copies of free software (and charge for
this service if you wish), that you receive source code or can get it
if you want it, that you can change the software or use pieces of it
in new free programs; and that you know you can do these things.
To protect your rights, we need to make restrictions that forbid
anyone to deny you these rights or to ask you to surrender the rights.
These restrictions translate to certain responsibilities for you if you
distribute copies of the software, or if you modify it.
For example, if you distribute copies of such a program, whether
gratis or for a fee, you must give the recipients all the rights that
you have. You must make sure that they, too, receive or can get the
source code. And you must show them these terms so they know their
rights.
We protect your rights with two steps: (1) copyright the software, and
(2) offer you this license which gives you legal permission to copy,
distribute and/or modify the software.
Also, for each author's protection and ours, we want to make certain
that everyone understands that there is no warranty for this free
software. If the software is modified by someone else and passed on, we
want its recipients to know that what they have is not the original, so
that any problems introduced by others will not reflect on the original
authors' reputations.
Finally, any free program is threatened constantly by software
patents. We wish to avoid the danger that redistributors of a free
program will individually obtain patent licenses, in effect making the
program proprietary. To prevent this, we have made it clear that any
patent must be licensed for everyone's free use or not licensed at all.
The precise terms and conditions for copying, distribution and
modification follow.
GNU GENERAL PUBLIC LICENSE
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
0. This License applies to any program or other work which contains
a notice placed by the copyright holder saying it may be distributed
under the terms of this General Public License. The "Program", below,
refers to any such program or work, and a "work based on the Program"
means either the Program or any derivative work under copyright law:
that is to say, a work containing the Program or a portion of it,
either verbatim or with modifications and/or translated into another
language. (Hereinafter, translation is included without limitation in
the term "modification".) Each licensee is addressed as "you".
Activities other than copying, distribution and modification are not
covered by this License; they are outside its scope. The act of
running the Program is not restricted, and the output from the Program
is covered only if its contents constitute a work based on the
Program (independent of having been made by running the Program).
Whether that is true depends on what the Program does.
1. You may copy and distribute verbatim copies of the Program's
source code as you receive it, in any medium, provided that you
conspicuously and appropriately publish on each copy an appropriate
copyright notice and disclaimer of warranty; keep intact all the
notices that refer to this License and to the absence of any warranty;
and give any other recipients of the Program a copy of this License
along with the Program.
You may charge a fee for the physical act of transferring a copy, and
you may at your option offer warranty protection in exchange for a fee.
2. You may modify your copy or copies of the Program or any portion
of it, thus forming a work based on the Program, and copy and
distribute such modifications or work under the terms of Section 1
above, provided that you also meet all of these conditions:
a) You must cause the modified files to carry prominent notices
stating that you changed the files and the date of any change.
b) You must cause any work that you distribute or publish, that in
whole or in part contains or is derived from the Program or any
part thereof, to be licensed as a whole at no charge to all third
parties under the terms of this License.
c) If the modified program normally reads commands interactively
when run, you must cause it, when started running for such
interactive use in the most ordinary way, to print or display an
announcement including an appropriate copyright notice and a
notice that there is no warranty (or else, saying that you provide
a warranty) and that users may redistribute the program under
these conditions, and telling the user how to view a copy of this
License. (Exception: if the Program itself is interactive but
does not normally print such an announcement, your work based on
the Program is not required to print an announcement.)
These requirements apply to the modified work as a whole. If
identifiable sections of that work are not derived from the Program,
and can be reasonably considered independent and separate works in
themselves, then this License, and its terms, do not apply to those
sections when you distribute them as separate works. But when you
distribute the same sections as part of a whole which is a work based
on the Program, the distribution of the whole must be on the terms of
this License, whose permissions for other licensees extend to the
entire whole, and thus to each and every part regardless of who wrote it.
Thus, it is not the intent of this section to claim rights or contest
your rights to work written entirely by you; rather, the intent is to
exercise the right to control the distribution of derivative or
collective works based on the Program.
In addition, mere aggregation of another work not based on the Program
with the Program (or with a work based on the Program) on a volume of
a storage or distribution medium does not bring the other work under
the scope of this License.
3. You may copy and distribute the Program (or a work based on it,
under Section 2) in object code or executable form under the terms of
Sections 1 and 2 above provided that you also do one of the following:
a) Accompany it with the complete corresponding machine-readable
source code, which must be distributed under the terms of Sections
1 and 2 above on a medium customarily used for software interchange; or,
b) Accompany it with a written offer, valid for at least three
years, to give any third party, for a charge no more than your
cost of physically performing source distribution, a complete
machine-readable copy of the corresponding source code, to be
distributed under the terms of Sections 1 and 2 above on a medium
customarily used for software interchange; or,
c) Accompany it with the information you received as to the offer
to distribute corresponding source code. (This alternative is
allowed only for noncommercial distribution and only if you
received the program in object code or executable form with such
an offer, in accord with Subsection b above.)
The source code for a work means the preferred form of the work for
making modifications to it. For an executable work, complete source
code means all the source code for all modules it contains, plus any
associated interface definition files, plus the scripts used to
control compilation and installation of the executable. However, as a
special exception, the source code distributed need not include
anything that is normally distributed (in either source or binary
form) with the major components (compiler, kernel, and so on) of the
operating system on which the executable runs, unless that component
itself accompanies the executable.
If distribution of executable or object code is made by offering
access to copy from a designated place, then offering equivalent
access to copy the source code from the same place counts as
distribution of the source code, even though third parties are not
compelled to copy the source along with the object code.
4. You may not copy, modify, sublicense, or distribute the Program
except as expressly provided under this License. Any attempt
otherwise to copy, modify, sublicense or distribute the Program is
void, and will automatically terminate your rights under this License.
However, parties who have received copies, or rights, from you under
this License will not have their licenses terminated so long as such
parties remain in full compliance.
5. You are not required to accept this License, since you have not
signed it. However, nothing else grants you permission to modify or
distribute the Program or its derivative works. These actions are
prohibited by law if you do not accept this License. Therefore, by
modifying or distributing the Program (or any work based on the
Program), you indicate your acceptance of this License to do so, and
all its terms and conditions for copying, distributing or modifying
the Program or works based on it.
6. Each time you redistribute the Program (or any work based on the
Program), the recipient automatically receives a license from the
original licensor to copy, distribute or modify the Program subject to
these terms and conditions. You may not impose any further
restrictions on the recipients' exercise of the rights granted herein.
You are not responsible for enforcing compliance by third parties to
this License.
7. If, as a consequence of a court judgment or allegation of patent
infringement or for any other reason (not limited to patent issues),
conditions are imposed on you (whether by court order, agreement or
otherwise) that contradict the conditions of this License, they do not
excuse you from the conditions of this License. If you cannot
distribute so as to satisfy simultaneously your obligations under this
License and any other pertinent obligations, then as a consequence you
may not distribute the Program at all. For example, if a patent
license would not permit royalty-free redistribution of the Program by
all those who receive copies directly or indirectly through you, then
the only way you could satisfy both it and this License would be to
refrain entirely from distribution of the Program.
If any portion of this section is held invalid or unenforceable under
any particular circumstance, the balance of the section is intended to
apply and the section as a whole is intended to apply in other
circumstances.
It is not the purpose of this section to induce you to infringe any
patents or other property right claims or to contest validity of any
such claims; this section has the sole purpose of protecting the
integrity of the free software distribution system, which is
implemented by public license practices. Many people have made
generous contributions to the wide range of software distributed
through that system in reliance on consistent application of that
system; it is up to the author/donor to decide if he or she is willing
to distribute software through any other system and a licensee cannot
impose that choice.
This section is intended to make thoroughly clear what is believed to
be a consequence of the rest of this License.
8. If the distribution and/or use of the Program is restricted in
certain countries either by patents or by copyrighted interfaces, the
original copyright holder who places the Program under this License
may add an explicit geographical distribution limitation excluding
those countries, so that distribution is permitted only in or among
countries not thus excluded. In such case, this License incorporates
the limitation as if written in the body of this License.
9. The Free Software Foundation may publish revised and/or new versions
of the General Public License from time to time. Such new versions will
be similar in spirit to the present version, but may differ in detail to
address new problems or concerns.
Each version is given a distinguishing version number. If the Program
specifies a version number of this License which applies to it and "any
later version", you have the option of following the terms and conditions
either of that version or of any later version published by the Free
Software Foundation. If the Program does not specify a version number of
this License, you may choose any version ever published by the Free Software
Foundation.
10. If you wish to incorporate parts of the Program into other free
programs whose distribution conditions are different, write to the author
to ask for permission. For software which is copyrighted by the Free
Software Foundation, write to the Free Software Foundation; we sometimes
make exceptions for this. Our decision will be guided by the two goals
of preserving the free status of all derivatives of our free software and
of promoting the sharing and reuse of software generally.
NO WARRANTY
11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
REPAIR OR CORRECTION.
12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) <year> <name of author>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) year name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
<signature of Ty Coon>, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.
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<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">This is Epigrass version 1.5.0<br /><br />More information about Epigrass can be found at the epigrass </span><a href="http://epigrass.sourceforge.net"><span style=" font-weight:600; text-decoration: underline; color:#0000ff;">website</span></a></p></body></html>
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<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">Epigrass</span>: </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">EPI</span>demiological </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">G</span>eo-<span style=" font-weight:600;">R</span>eferenced </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">A</span>nalysis and </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>imulation </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>ystem</p></body></html>
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<p style=" margin-top:18px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:xx-large; font-weight:600;"><span style=" font-size:xx-large;">Developers:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Flávio Codeço Coelho<br />Cláudia Torres Codeço </p></body></html>
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<p style=" margin-top:16px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:x-large; font-weight:600;"><span style=" font-size:x-large;">Translations:</span></p>
<p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">French:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Yann Chemin </p></body></html>
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<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. </p></body></html>
<span style="font-weight: bold;">This is Epigrass version
1.5.0<br>
<br>
More information about Epigrass can be found at the epigrass <a
href="http://epigrass.sourceforge.net">website</a></span>
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">This is Epigrass version 2.0a1<br /><br />More information about Epigrass can be found at the epigrass </span><a href="http://epigrass.sourceforge.net"><span style=" font-weight:600; text-decoration: underline; color:#0057ae;">website</span></a></p></body></html>
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'DejaVu Sans'; font-size:10pt; font-weight:400; font-style:normal;">
<p style=" margin-top:18px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:xx-large; font-weight:600;"><span style=" font-size:xx-large;">Developers:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Flávio Codeço Coelho<br />Cláudia Torres Codeço </p></body></html>
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p style=" margin-top:16px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:x-large; font-weight:600;"><span style=" font-size:x-large;">Translations:</span></p>
<p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">French:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Yann Chemin </p>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:12pt; font-weight:600;">Spanish:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-weight:600;"><span style=" font-weight:400;">Naco Serrano</span></p></body></html>
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. </p></body></html>
epigrass-2.4.7/Epigrass/epigrass_rc.py 0000664 0000000 0000000 00000142005 12772733376 017754 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Resource object code
#
# Created: Sun Sep 11 15:24:17 2011
# by: The Resource Compiler for PyQt (Qt v4.7.2)
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore
qt_resource_data = "\
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qt_resource_name = "\
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qt_resource_struct = "\
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def qInitResources():
QtCore.qRegisterResourceData(0x01, qt_resource_struct, qt_resource_name, qt_resource_data)
def qCleanupResources():
QtCore.qUnregisterResourceData(0x01, qt_resource_struct, qt_resource_name, qt_resource_data)
qInitResources()
epigrass-2.4.7/Epigrass/epigrass_rc.py.bak 0000664 0000000 0000000 00000142005 12720633740 020473 0 ustar root root 0000000 0000000 # -*- coding: utf-8 -*-
# Resource object code
#
# Created: Sun Sep 11 15:24:17 2011
# by: The Resource Compiler for PyQt (Qt v4.7.2)
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore
qt_resource_data = "\
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def qInitResources():
QtCore.qRegisterResourceData(0x01, qt_resource_struct, qt_resource_name, qt_resource_data)
def qCleanupResources():
QtCore.qUnregisterResourceData(0x01, qt_resource_struct, qt_resource_name, qt_resource_data)
qInitResources()
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MainWindow . E P G @540:B>@ .EPG Editor
MainWindow 3 3 0 6 3306
MainWindow < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " >KE>4 87 @540:B>@0 . < / p > < / b o d y > < / h t m l > qLeave the editor.
MainWindow < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " >!>E@0=8BL D09; < / p > < / b o d y > < / h t m l > iSave file
MainWindow 1 & E p i g r a s s About &Epigrass
MainWindow &>1028BL ?5@5<5==CN Add variable
MainWindow
A l t + E Alt+E
MainWindow
A l t + R Alt+R
MainWindow '0AB>B0 0=8<0F88 Animation rate
MainWindow 2B> - & 1=>2;5=85
Auto-&Refresh
MainWindow 575@2=0O :>?8O Backup
MainWindow $ P o r t u g s B r a s i l e o Brazilian portuguese
MainWindow C S V CSV
MainWindow
K1>@ Choose
MainWindow )Q;:=8B5 <KHLN 8 ?5@5428309B5 C7;0K , 8A?>;L7C9B5 A:@>; 8 :;028H8 " + " 8 " - " 4;O C25;8G5=8O VClick and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys
MainWindow r 06<8B5 745AL 4;O ?@>A<>B@0 :@0B:>3> >?8A0=8O e p i g r a s s ;Click here for a short description of the epigrass database
MainWindow h 06<8B5 745AL 4;O @575@2=>3> :>?8@>20=8O e p i g r a s s +Click here to backup the epigrass database
MainWindow < 06<8B5 4;O 2KE>40 87 E p i g r a s s Click here to leave Epigrass
MainWindow z 06<8B5 4;O ?@>A<>B@0 @C:>2>4AB20 ?>;L7>20B5;O 2 251 -1@0C75@5 3Click here to open the userguide in the web browser
MainWindow F 06<8B5 4;O 70?CA:0 0H59 A8<C;OF88 #Click here to start your simulation
MainWindow "5@52> :>=A5=ACA0 Consensus Tree
MainWindow C t r l + N Ctrl+N
MainWindow C t r l + O Ctrl+O
MainWindow C t r l + R Ctrl+R
MainWindow C t r l + 5 Ctrl+S
MainWindow C t r l + X Ctrl+X
MainWindow Database
MainWindow !?5F8D8:0F8O Database Specification
MainWindow V 0@>;L 4;O 2254Q==>3> 8<5=8 ?>;L7>20B5;O (Database password for the userid entered
MainWindow "8? : Database type:
MainWindow ?8A0=85 Description
MainWindow &KE>4 E&xit
MainWindow @02:0 Edit
MainWindow 540:B>@ Editor
MainWindow E n g l i s h English
MainWindow h2548B5 8<O ?@54?>GB8B5;L=>9 ?@>3@0<<K ?@>A<>B@0 P D F +Enter the name of your preferred PDF viewer
MainWindow Z2548B5 =><5@ ?>@B0 , :>B>@K9 A;CH05B A5@25@ . . &Enter the port the server listens to.
MainWindow j2548B5 0H5 ?>;=>5 8<O . => 1C45B 4>102;5=> 2 >BGQB . 7Enter your full name. This will be added to the report.
MainWindow V2548B5 ?@54?>GB8B5;L=K9 B5:AB>2K9 @540:B>@ Enter your preferred text editor
MainWindow E p i g r a s s Epigrass
MainWindow
KE>4 Exit
MainWindow F 1 F1
MainWindow $09; File
MainWindow F r a n c s French
MainWindow !?@02:0 Help
MainWindow
%>AB : Host:
MainWindow =D>@<0F8O Info
MainWindow /7K: Language
MainWindow >ABC?=K5 :0@BK : Maps available:
MainWindow &!?5F8D8:0F8O <>45;8 Model Specification
MainWindow
M y S Q L MySQL
MainWindow <O Name
MainWindow 5B :0@BK No map
MainWindow B:@KBL Open
MainWindow . @>3@0<<0 ?@>A<>B@0 P D F
PDF Viewer
MainWindow 0@>;L : Password:
MainWindow
>@B : Port:
MainWindow @>3@5AA : Progress:
MainWindow
BGQB Report
MainWindow " 0@0<5B@K 70?CA:0 Run Options
MainWindow S Q L i t e SQLite
MainWindow !:0=8@>20BL Scan DB
MainWindow 8<O A:@8?B0 : Script Name:
MainWindow >K15@8B5 , E@0=OICN A8<C;OF8N #Select a database stored simulation
MainWindow K15@8B5 48@5:B>@8N A D09;0<8 45@52L52 , =0 :>B>@KE AB@>8BAO :>=A5=ACA . 9Select a directory with tree-files to build consensus on.
MainWindow K15@8B5 :0@BC Select a map
MainWindow XK15@8B5 ?5@5<5==CN , >B>1@0605<CN 2 0=8<0F88 -Select a variable to display in the animation
MainWindow *K15@8B5 O7K: 4;O G U I Select the language for the GUI
MainWindow *K15@8B5 B8? 20H59 Select your database type
MainWindow 0AB@>9:8 Settings
MainWindow $ @>A<>B@ A8<C;OF88 Simulation Display
MainWindow &!>AB>O=85 A8<C;OF88 Simulation Status
MainWindow (03 A8<C;OF88 Simulation step
MainWindow (!8<C;OF8O A>E@0=5=0 : Simulations stored:
MainWindow E s p a o l Spanish
MainWindow *5@52LO @0A?@545;5=8O Spread Trees
MainWindow !B0@B 0=8<0F88 Start animation
MainWindow 4-B> U R L 20H53> A5@25@0 . (This is the url of your database server.
MainWindow z-B> 845=B8D8:0B>@ (8<O ?>;L7>20B5;O 4;O 4>ABC?0 : A5@25@C ) 4This is the userid for accessing the database server
MainWindow >'8A;> 2@5<5==KE H03>2 2 A5:C=4C Time steps per second
MainWindow 0!?@02:0 ?> 8A?>;L7>20=8N
Usage help
MainWindow "<O ?>;L7>20B5;O : Userid:
MainWindow #B8;8BK Utilities
MainWindow =0G5=85 Value
MainWindow 5@5<5==0O Variable
MainWindow 0 B>1@0605<0O ?5@5<5==0O : Variable to display:
MainWindow & @>3@0<<0 ?@>A<>B@0 Viewer
MainWindow 87C0;870F8O
Visualization
MainWindow l o c a l h o s t localhost
MainWindow 2548B5 8<O A:@8?B0 8;8 =06<8B5 :=>?:C "K1>@ " A?@020 , GB>1K 2K1@0BL D09; . Xwrite the name of the your script or press the choose button on the right to select one.
MainWindow & : &OK MainWindow_Impl
* . e p g *.epg MainWindow_Impl >445@6:0 25B259 Branch Support MainWindow_Impl p 52>7<>6=> >B:@KBL >BGQB .
#1548B5AL GB> >= A35=5@8@>20= . ;Could not open the report.
Make sure you have generated it. MainWindow_Impl =0AB>OI55 2@5<O DC=:F8O @575@2=>3> :>?8@>20=8O
@01>B05B B>;L:> 4;O ;>:0;L=KE A5@25@>2 . ]Currently, the database backup function only
works on local database servers. MainWindow_Impl : 540:B>@ 8;8 A:@8?B =5 2K1@0= Editor or Script not selected MainWindow_Impl CAB0O B01;8F0 Empty Table MainWindow_Impl |K15@8B5 <8=8<0;L=K9 C@>25=L ?>445@6:8 25B259 4;O >B>1@065=8O : .Enter minimum branch support level to display: MainWindow_Impl * 5?>;=0O :>=D83C@0F8O Incomplete Configuration MainWindow_Impl * BACBAB2C5B ?0@>;L Missing Database Password MainWindow_Impl 5B >BGQB0 No Report MainWindow_Impl * 5;>:0;L=K9 A5@25@ Non-local Database Server MainWindow_Impl >60;C9AB0 ?@>25@LB5 . e p i g r a s s r c p o r =0 ?@54<5B
>BACBAB28O :;NG52>3> A;>20 % s 2 A5:F88 % s UPlease check file .epigrassrc for missing %s keyword
from section %s MainWindow_Impl H >60;C9AB0 , 22548B5 7=0G5=85 4;O % s . Please enter a value for %s. MainWindow_Impl < >60;C9AB0 , 22548B5 ?0@>;L . )Please enter password for MySQL database. MainWindow_Impl l >60;C9AB0 , 22548B5 ?0@>;L M y S Q L =0 ?5@2>9 2:;04:5 . BPlease enter the password for the MySQL database in the first tab. MainWindow_Impl >60;C9AB0 C1548B5AL , GB> K 2K1@0;8
:0: @540:B>@ , B0: 8 A:@8?B 0H59 <>45;8 . JPlease make sure you have selected both
an editor and your model's script. MainWindow_Impl 4=AB@C:F88 2>AAB0=>2;5=8O : Restore Instructions: MainWindow_Impl lK15@8B5 48@5:B>@8N A D09;0<8 45@52L52 ( e p i p a t h * . c s v ) /Select Directory with Tree Files (epipath*.csv) MainWindow_Impl (K1>@ A:@8?B0 <>45;8 Select your Model's Script MainWindow_Impl *!8=B0:A8G5A:0O >H81:0 Syntax Error MainWindow_Impl P E p i g r a s s 1K;0 A:>?8@>20=0
2 D09; A 8<5=5< " e p i g r a s s . s q l " .
-B>B D09; =0E>48BAO 2 20H59 @01>G59 48@5:B>@88 .
;O 2>AAB0=>2;5=8O 22548B5 :><0=4C :
e p i g r a s s . s q l > m y s q l The epigrass database has been Backed up
to a file named "epigrass.sql".
This file is in you current working directory.
To restore the database type:
epigrass.sql > mysql MainWindow_Impl K 2K1@0;8 ?CABCN B01;8FC .
>60;C9AB0 , 2K15@8B5 4@C3CN B01;8FC 87 <5=N . LYou have selected an empty table.
Please select another table from the menu. MainWindow_Impl Fx GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
The licenses for most software are designed to take away your
freedom to share and change it. By contrast, the GNU General Public
License is intended to guarantee your freedom to share and change free
software--to make sure the software is free for all its users. This
General Public License applies to most of the Free Software
Foundation's software and to any other program whose authors commit to
using it. (Some other Free Software Foundation software is covered by
the GNU Library General Public License instead.) You can apply it to
your programs, too.
When we speak of free software, we are referring to freedom, not
price. Our General Public Licenses are designed to make sure that you
have the freedom to distribute copies of free software (and charge for
this service if you wish), that you receive source code or can get it
if you want it, that you can change the software or use pieces of it
in new free programs; and that you know you can do these things.
To protect your rights, we need to make restrictions that forbid
anyone to deny you these rights or to ask you to surrender the rights.
These restrictions translate to certain responsibilities for you if you
distribute copies of the software, or if you modify it.
For example, if you distribute copies of such a program, whether
gratis or for a fee, you must give the recipients all the rights that
you have. You must make sure that they, too, receive or can get the
source code. And you must show them these terms so they know their
rights.
We protect your rights with two steps: (1) copyright the software, and
(2) offer you this license which gives you legal permission to copy,
distribute and/or modify the software.
Also, for each author's protection and ours, we want to make certain
that everyone understands that there is no warranty for this free
software. If the software is modified by someone else and passed on, we
want its recipients to know that what they have is not the original, so
that any problems introduced by others will not reflect on the original
authors' reputations.
Finally, any free program is threatened constantly by software
patents. We wish to avoid the danger that redistributors of a free
program will individually obtain patent licenses, in effect making the
program proprietary. To prevent this, we have made it clear that any
patent must be licensed for everyone's free use or not licensed at all.
The precise terms and conditions for copying, distribution and
modification follow.
GNU GENERAL PUBLIC LICENSE
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
0. This License applies to any program or other work which contains
a notice placed by the copyright holder saying it may be distributed
under the terms of this General Public License. The "Program", below,
refers to any such program or work, and a "work based on the Program"
means either the Program or any derivative work under copyright law:
that is to say, a work containing the Program or a portion of it,
either verbatim or with modifications and/or translated into another
language. (Hereinafter, translation is included without limitation in
the term "modification".) Each licensee is addressed as "you".
Activities other than copying, distribution and modification are not
covered by this License; they are outside its scope. The act of
running the Program is not restricted, and the output from the Program
is covered only if its contents constitute a work based on the
Program (independent of having been made by running the Program).
Whether that is true depends on what the Program does.
1. You may copy and distribute verbatim copies of the Program's
source code as you receive it, in any medium, provided that you
conspicuously and appropriately publish on each copy an appropriate
copyright notice and disclaimer of warranty; keep intact all the
notices that refer to this License and to the absence of any warranty;
and give any other recipients of the Program a copy of this License
along with the Program.
You may charge a fee for the physical act of transferring a copy, and
you may at your option offer warranty protection in exchange for a fee.
2. You may modify your copy or copies of the Program or any portion
of it, thus forming a work based on the Program, and copy and
distribute such modifications or work under the terms of Section 1
above, provided that you also meet all of these conditions:
a) You must cause the modified files to carry prominent notices
stating that you changed the files and the date of any change.
b) You must cause any work that you distribute or publish, that in
whole or in part contains or is derived from the Program or any
part thereof, to be licensed as a whole at no charge to all third
parties under the terms of this License.
c) If the modified program normally reads commands interactively
when run, you must cause it, when started running for such
interactive use in the most ordinary way, to print or display an
announcement including an appropriate copyright notice and a
notice that there is no warranty (or else, saying that you provide
a warranty) and that users may redistribute the program under
these conditions, and telling the user how to view a copy of this
License. (Exception: if the Program itself is interactive but
does not normally print such an announcement, your work based on
the Program is not required to print an announcement.)
These requirements apply to the modified work as a whole. If
identifiable sections of that work are not derived from the Program,
and can be reasonably considered independent and separate works in
themselves, then this License, and its terms, do not apply to those
sections when you distribute them as separate works. But when you
distribute the same sections as part of a whole which is a work based
on the Program, the distribution of the whole must be on the terms of
this License, whose permissions for other licensees extend to the
entire whole, and thus to each and every part regardless of who wrote it.
Thus, it is not the intent of this section to claim rights or contest
your rights to work written entirely by you; rather, the intent is to
exercise the right to control the distribution of derivative or
collective works based on the Program.
In addition, mere aggregation of another work not based on the Program
with the Program (or with a work based on the Program) on a volume of
a storage or distribution medium does not bring the other work under
the scope of this License.
3. You may copy and distribute the Program (or a work based on it,
under Section 2) in object code or executable form under the terms of
Sections 1 and 2 above provided that you also do one of the following:
a) Accompany it with the complete corresponding machine-readable
source code, which must be distributed under the terms of Sections
1 and 2 above on a medium customarily used for software interchange; or,
b) Accompany it with a written offer, valid for at least three
years, to give any third party, for a charge no more than your
cost of physically performing source distribution, a complete
machine-readable copy of the corresponding source code, to be
distributed under the terms of Sections 1 and 2 above on a medium
customarily used for software interchange; or,
c) Accompany it with the information you received as to the offer
to distribute corresponding source code. (This alternative is
allowed only for noncommercial distribution and only if you
received the program in object code or executable form with such
an offer, in accord with Subsection b above.)
The source code for a work means the preferred form of the work for
making modifications to it. For an executable work, complete source
code means all the source code for all modules it contains, plus any
associated interface definition files, plus the scripts used to
control compilation and installation of the executable. However, as a
special exception, the source code distributed need not include
anything that is normally distributed (in either source or binary
form) with the major components (compiler, kernel, and so on) of the
operating system on which the executable runs, unless that component
itself accompanies the executable.
If distribution of executable or object code is made by offering
access to copy from a designated place, then offering equivalent
access to copy the source code from the same place counts as
distribution of the source code, even though third parties are not
compelled to copy the source along with the object code.
4. You may not copy, modify, sublicense, or distribute the Program
except as expressly provided under this License. Any attempt
otherwise to copy, modify, sublicense or distribute the Program is
void, and will automatically terminate your rights under this License.
However, parties who have received copies, or rights, from you under
this License will not have their licenses terminated so long as such
parties remain in full compliance.
5. You are not required to accept this License, since you have not
signed it. However, nothing else grants you permission to modify or
distribute the Program or its derivative works. These actions are
prohibited by law if you do not accept this License. Therefore, by
modifying or distributing the Program (or any work based on the
Program), you indicate your acceptance of this License to do so, and
all its terms and conditions for copying, distributing or modifying
the Program or works based on it.
6. Each time you redistribute the Program (or any work based on the
Program), the recipient automatically receives a license from the
original licensor to copy, distribute or modify the Program subject to
these terms and conditions. You may not impose any further
restrictions on the recipients' exercise of the rights granted herein.
You are not responsible for enforcing compliance by third parties to
this License.
7. If, as a consequence of a court judgment or allegation of patent
infringement or for any other reason (not limited to patent issues),
conditions are imposed on you (whether by court order, agreement or
otherwise) that contradict the conditions of this License, they do not
excuse you from the conditions of this License. If you cannot
distribute so as to satisfy simultaneously your obligations under this
License and any other pertinent obligations, then as a consequence you
may not distribute the Program at all. For example, if a patent
license would not permit royalty-free redistribution of the Program by
all those who receive copies directly or indirectly through you, then
the only way you could satisfy both it and this License would be to
refrain entirely from distribution of the Program.
If any portion of this section is held invalid or unenforceable under
any particular circumstance, the balance of the section is intended to
apply and the section as a whole is intended to apply in other
circumstances.
It is not the purpose of this section to induce you to infringe any
patents or other property right claims or to contest validity of any
such claims; this section has the sole purpose of protecting the
integrity of the free software distribution system, which is
implemented by public license practices. Many people have made
generous contributions to the wide range of software distributed
through that system in reliance on consistent application of that
system; it is up to the author/donor to decide if he or she is willing
to distribute software through any other system and a licensee cannot
impose that choice.
This section is intended to make thoroughly clear what is believed to
be a consequence of the rest of this License.
8. If the distribution and/or use of the Program is restricted in
certain countries either by patents or by copyrighted interfaces, the
original copyright holder who places the Program under this License
may add an explicit geographical distribution limitation excluding
those countries, so that distribution is permitted only in or among
countries not thus excluded. In such case, this License incorporates
the limitation as if written in the body of this License.
9. The Free Software Foundation may publish revised and/or new versions
of the General Public License from time to time. Such new versions will
be similar in spirit to the present version, but may differ in detail to
address new problems or concerns.
Each version is given a distinguishing version number. If the Program
specifies a version number of this License which applies to it and "any
later version", you have the option of following the terms and conditions
either of that version or of any later version published by the Free
Software Foundation. If the Program does not specify a version number of
this License, you may choose any version ever published by the Free Software
Foundation.
10. If you wish to incorporate parts of the Program into other free
programs whose distribution conditions are different, write to the author
to ask for permission. For software which is copyrighted by the Free
Software Foundation, write to the Free Software Foundation; we sometimes
make exceptions for this. Our decision will be guided by the two goals
of preserving the free status of all derivatives of our free software and
of promoting the sharing and reuse of software generally.
NO WARRANTY
11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS
TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
REPAIR OR CORRECTION.
12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
Copyright (C)
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) year name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.
aboutDialog &0:@KBL &Close aboutDialog
This is Epigrass version 2.0a1 website
aboutDialog E
GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. 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It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License.
aboutDialog
Translations:
French:
Yann Chemin
Spanish:
Naco Serrano
aboutDialog
Developers:
Flávio Codeço Coelho
aboutDialog < b > E p i g r a s s < / b > : < b > E P I < / b > d e m i o l o g i c a l < b > G < / b > e o - < b > R < / b > e f e r e n c e d < b > A < / b > n a l y s i s a n d < b > S < / b > i m u l a t i o n < b > S < / b > y s t e m |Epigrass :
EPI demiological
G eo-R eferenced
A nalysis and
S imulation
S ystem aboutDialog < h 1 > D e s a r r o l l a d o r e s : < / h 1 > F l & a a c u t e ; v i o C o d e & c c e d i l ; o C o e l h o < b r > C l & a a c u t e ; u d i a T o r r e s C o d e & c c e d i l ; o `Developers:
Flávio Codeço CoelhoTranslations:
French:
Yann Chemin
aboutDialog
8 < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > E p i g r a s s < / s p a n > : < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > E P I < / s p a n > d e m i o l o g i c a l < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > G < / s p a n > e o - < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > R < / s p a n > e f e r e n c e d < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > A < / s p a n > n a l y s i s a n d < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > S < / s p a n > i m u l a t i o n < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " > S < / s p a n > y s t e m < / p > < / b o d y > < / h t m l > $Epigrass :
EPI demiological
G eo-R eferenced
A nalysis and
S imulation
S ystem
aboutDialog < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; " >-B> E p i g r a s s 25@A88 2 . 0 . b 1 < b r / > < b r / >>;LH5 8=D>@<0F88 >1 E p i g r a s s <>6=> =09B8 =0 A09B5 < / s p a n > < a h r e f = " h t t p : / / e p i g r a s s . s o u r c e f o r g e . n e t " > < s p a n s t y l e = " f o n t - w e i g h t : 6 0 0 ; t e x t - d e c o r a t i o n : u n d e r l i n e ; c o l o r : # 0 0 0 0 f f ; " > h t t p : / / e p i g r a s s . s o u r c e f o r g e . n e t < / s p a n > < / a > < / p > < / b o d y > < / h t m l > uThis is Epigrass version 1.5.0 website
aboutDialog T < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " >
G N U G E N E R A L P U B L I C L I C E N S E5@A8O 2 , 8N=L 1 9 9 13 . C o p y r i g h t ( C ) 1 9 8 9 , 1 9 9 1 F r e e S o f t w a r e F o u n d a t i o n , I n c . 5 9 T e m p l e P l a c e - S u i t e 3 3 0 , B o s t o n , M A 0 2 1 1 1 - 1 3 0 7 , U S A064K9 2?@025 :>?8@>20BL 8 @0A?@>AB@0=OBL M:75<?;O@K =0AB>OI59 8F5=788 157 2=5A5=8O 87<5=5=89 2 55 B5:AB . @50<1C;0 . >;LH8=AB2> ;8F5=789 =0 ?@>3@0<<=>5 >15A?5G5=85 ;8H0 eB 20A ?@020 @0A?@>AB@0=OBL 8 2=>A8BL 87<5=5=8O 2 MB> ?@>3@0<<=>5 >15A?5G5=85 . !B0=40@B=0O 1I5AB25==0O 8F5=78O G N U , =0?@>B82 , @07@01>B0=0 A F5;LN 30@0=B8@>20BL 20< ?@02> A>2<5AB=> 8A?>;L7>20BL 8 2=>A8BL 87<5=5=8O 2 A2>1>4=>5 ?@>3@0<<=>5 >15A?5G5=85 , B .5 . >15A?5G8BL A2>1>4=K9 4>ABC? : ?@>3@0<<=><C >15A?5G5=8N 4;O 2A5E ?>;L7>20B5;59 . #A;>28O =0AB>OI59 !B0=40@B=>9 1I5AB25==>9 8F5=788 ?@8<5=ONBAO : 1>;LH59 G0AB8 ?@>3@0<<=>3> >15A?5G5=8O F r e e S o f t w a r e F o u n d a t i o n , 0 B0:65 : ;N1><C 4@C3><C ?@>3@0<<=><C >15A?5G5=8N ?> 65;0=8N 53> 02B>@0 . 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A;CG05 5A;8 ?@>872545=85 2 2845 >1J5:B=>3> :>40 8;8 2 8A?>;=O5<>9 D>@<5 @0A?@>AB@0=O5BAO ?CB5< ?@54>AB02;5=8O 4>ABC?0 4;O :>?8@>20=8O 53> 87 >?@545;5==>3> <5AB0 , >15A?5G5=85 @02=>F5==>3> 4>ABC?0 4;O :>?8@>20=8O 8AE>4=>3> B5:AB0 87 MB>3> 65 <5AB0 C4>2;5B2>@O5B B@51>20=8O< @0A?@>AB@0=5=8O 8AE>4=>3> B5:AB0 , 4065 5A;8 B@5BL8 ;8F0 ?@8 MB>< =5 >1O70=K :>?8@>20BL 8AE>4=K9 B5:AB 2<5AB5 A >1J5:B=K< :>4>< ?@>872545=8O . 4 . 8F5=780B 2?@025 2>A?@>872>48BL , <>48D8F8@>20BL , @0A?@>AB@0=OBL 8;8 ?5@54020BL ?@020 =0 8A?>;L7>20=85 @>3@0<<K B>;L:> =0 CA;>28OE =0AB>OI59 8F5=788 . N1>5 2>A?@>872545=85 , <>48D8:0F8O , @0A?@>AB@0=5=85 8;8 ?5@540G0 ?@02 =0 8=KE CA;>28OE O2;ONBAO =5459AB28B5;L=K<8 8 02B><0B8G5A:8 254CB : @0AB>@65=8N =0AB>OI59 8F5=788 8 ?@5:@0I5=8N 2A5E ?@02 8F5=780B0 , ?@54>AB02;5==KE 5<C =0AB>OI59 8F5=7859 . @8 MB>< ?@020 B@5BL8E ;8F , :>B>@K< 8F5=780B 2 A>>B25BAB288 A =0AB>OI59 8F5=7859 ?5@540; M:75<?;O@K @>3@0<<K 8;8 ?@020 =0 =55 , A>E@0=ONBAO 2 A8;5 ?@8 CA;>288 ?>;=>3> A>1;N45=8O 8<8 =0AB>OI59 8F5=788 . 5 . 8F5=780B =5 >1O70= ?@8A>548=OBLAO : =0AB>OI59 8F5=788 , ?>A:>;L:C >= 55 =5 ?>4?8A0; . 4=0:> B>;L:> =0AB>OI0O 8F5=78O ?@54>AB02;O5B ?@02> @0A?@>AB@0=OBL 8;8 <>48D8F8@>20BL @>3@0<<C 8;8 ?@>872545=85 , ?@>872>4=>5 >B @>3@0<<K . >4>1=K5 459AB28O =0@CH0NB 459AB2CNI55 70:>=>40B5;LAB2> , 5A;8 >=8 =5 >ACI5AB2;ONBAO 2 A>>B25BAB288 A =0AB>OI59 8F5=7859 . A;8 8F5=780B 2=5A 87<5=5=8O 8;8 >ACI5AB28; @0A?@>AB@0=5=85 M:75<?;O@>2 @>3@0<<K 8;8 ?@>872545=8O , ?@>872>4=>3> >B @>3@0<<K , 8F5=780B B5< A0<K< ?>4B25@48; A2>5 ?@8A>548=5=85 : =0AB>OI59 8F5=788 2 F5;>< , 2:;NG0O CA;>28O , >?@545;ONI85 ?>@O4>: 2>A?@>872545=8O , @0A?@>AB@0=5=8O 8;8 <>48D8:0F88 @>3@0<<K 8;8 ?@>872545=8O , ?@>872>4=>3> >B @>3@0<<K . 6 . @8 @0A?@>AB@0=5=88 M:75<?;O@>2 @>3@0<<K 8;8 ?@>872545=8O , ?@>872>4=>3> >B @>3@0<<K , ?5@2>=0G0;L=K9 ;8F5=780@ 02B><0B8G5A:8 ?5@5405B ?@8>1@5B0B5;N B0:>3> M:75<?;O@0 ?@02> 2>A?@>872>48BL , @0A?@>AB@0=OBL 8 <>48D8F8@>20BL @>3@0<<C 2 A>>B25BAB288 A CA;>28O<8 =0AB>OI59 8F5=788 . 8F5=780B =5 2?@025 >3@0=8G820BL :0:8< -;81> A?>A>1>< >ACI5AB2;5=85 ?@8>1@5B0B5;O<8 ?>;CG5==KE 8<8 ?@02 . 8F5=780B =5 =5A5B >B25BAB25==>AB8 70 =5A>1;N45=85 CA;>289 =0AB>OI59 8F5=788 B@5BL8<8 ;8F0<8 . 7 . 8F5=780B =5 >A2>1>6405BAO >B 8A?>;=5=8O >1O70B5;LAB2 2 A>>B25BAB288 A =0AB>OI59 8F5=7859 2 A;CG05 , 5A;8 2 @57C;LB0B5 @5H5=8O AC40 8;8 70O2;5=8O > =0@CH5=88 8A:;NG8B5;L=KE ?@02 8;8 2 A2O78 A =0ABC?;5=85< 8=KE >1AB>OB5;LAB2 , =5 A2O70==KE =5?>A@54AB25==> A =0@CH5=85< 8A:;NG8B5;L=KE ?@02 , =0 8F5=780B0 =0 >A=>20=88 @5H5=8O AC40 , 4>3>2>@0 8;8 8=>< >A=>20=88 2>7;>65=K >1O70B5;LAB20 , :>B>@K5 ?@>B82>@5G0B CA;>28O< =0AB>OI59 8F5=788 . MB>< A;CG05 8F5=780B =5 2?@025 @0A?@>AB@0=OBL M:75<?;O@K @>3@0<<K , 5A;8 >= =5 <>65B >4=>2@5<5==> 8A?>;=8BL CA;>28O =0AB>OI59 8F5=788 8 2>7;>65==K5 =0 =53> C:070==K< 2KH5 A?>A>1>< >1O70B5;LAB20 . 0?@8<5@ , 5A;8 ?> CA;>28O< ;8F5=78>==>3> A>3;0H5=8O AC1;8F5=780B0< =5 <>65B 1KBL ?@54>AB02;5=> ?@02> 15A?;0B=>3> @0A?@>AB@0=5=8O M:75<?;O@>2 @>3@0<<K , :>B>@K5 >=8 ?@8>1@5;8 =0?@O<CN 8;8 G5@57 B@5BL8E ;8F C 8F5=780B0 , B> 2 MB>< A;CG05 8F5=780B >1O70= >B:070BLAO >B @0A?@>AB@0=5=8O M:75<?;O@>2 @>3@0<<K .A;8 ;N1>5 ?>;>65=85 =0AB>OI53> ?C=:B0 ?@8 =0ABC?;5=88 :>=:@5B=KE >1AB>OB5;LAB2 1C45B ?@87=0=> =5459AB28B5;L=K< 8;8 =5?@8<5=8<K< , =0AB>OI89 ?C=:B ?@8<5=O5BAO 70 8A:;NG5=85< B0:>3> ?>;>65=8O . 0AB>OI89 ?C=:B ?@8<5=O5BAO 2 F5;>< ?@8 ?@5:@0I5=88 2KH5C:070==KE >1AB>OB5;LAB2 8;8 8E >BACBAB288 .&5;LN 40==>3> ?C=:B0 =5 O2;O5BAO ?@8=C645=85 8F5=780B0 : =0@CH5=8N ?0B5=B0 8;8 70O2;5=8O =0 8=K5 ?@020 A>1AB25==>AB8 8;8 : >A?0@820=8N 459AB28B5;L=>AB8 B0:>3> 70O2;5=8O . 48=AB25==>9 F5;LN 40==>3> ?C=:B0 O2;O5BAO 70I8B0 =5?@8:>A=>25==>AB8 A8AB5<K @0A?@>AB@0=5=8O A2>1>4=>3> ?@>3@0<<=>3> >15A?5G5=8O , :>B>@0O >15A?5G8205BAO 70 AG5B >1I5AB25==>3> ;8F5=78@>20=8O . =>385 ;N48 2=5A;8 A2>9 I54@K9 2:;04 2 A>740=85 1>;LH>3> :>;8G5AB20 ?@>3@0<<=>3> >15A?5G5=8O , :>B>@>5 @0A?@>AB@0=O5BAO G5@57 40==CN A8AB5<C 2 =045645 =0 55 4;8B5;L=>5 8 ?>A;54>20B5;L=>5 ?@8<5=5=85 . 8F5=780B =5 2?@025 2K=C640BL 02B>@0 @0A?@>AB@0=OBL ?@>3@0<<=>5 >15A?5G5=85 G5@57 40==CN A8AB5<C . @02> 2K1>@0 A8AB5<K @0A?@>AB@0=5=8O ?@>3@0<<=>3> >15A?5G5=8O ?@8=04;568B 8A:;NG8B5;L=> 53> 02B>@C . 0AB>OI89 ?C=:B 7 8<55B F5;LN G5B:> >?@545;8BL B5 F5;8 , :>B>@K5 ?@5A;54CNB 2A5 >AB0;L=K5 ?>;>65=8O =0AB>OI59 8F5=788 . 8 . B>< A;CG05 5A;8 @0A?@>AB@0=5=85 8 /8;8 8A?>;L7>20=85 @>3@0<<K 2 >B45;L=KE 3>AC40@AB20E >3@0=8G5=> A>3;0H5=8O<8 2 >1;0AB8 ?0B5=B=KE 8;8 02B>@A:8E ?@02 , ?5@2>=0G0;L=K9 ?@02>>1;040B5;L , @0A?@>AB@0=ONI89 @>3@0<<C =0 CA;>28OE =0AB>OI59 8F5=788 , 2?@025 >3@0=8G8BL B5@@8B>@8N @0A?@>AB@0=5=8O @>3@0<<K , C:0702 B>;L:> B5 3>AC40@AB20 , =0 B5@@8B>@88 :>B>@KE 4>?CA:05BAO @0A?@>AB@0=5=85 @>3@0<<K 157 >3@0=8G5=89 , >1CA;>2;5==KE B0:8<8 A>3;0H5=8O<8 . MB>< A;CG05 B0:>5 C:070=85 2 >B=>H5=88 B5@@8B>@89 >?@545;5==KE 3>AC40@AB2 ?@87=05BAO >4=8< 87 CA;>289 =0AB>OI59 8F5=788 . 9 . F r e e S o f t w a r e F o u n d a t i o n <>65B ?C1;8:>20BL 8A?@02;5==K5 8 /8;8 =>2K5 25@A88 =0AB>OI59 !B0=40@B=>9 1I5AB25==>9 8F5=788 . "0:85 25@A88 <>3CB 1KBL 4>?>;=5=K @07;8G=K<8 =>@<0<8 , @53C;8@CNI8<8 ?@02>>B=>H5=8O , :>B>@K5 2>7=8:;8 ?>A;5 >?C1;8:>20=8O ?@54K4CI8E 25@A89 , >4=0:> 2 =8E 1C4CB A>E@0=5=K >A=>2=K5 ?@8=F8?K , 70:@5?;5==K5 2 =0AB>OI59 25@A88 .064>9 25@A88 ?@8A208205BAO A2>9 A>1AB25==K9 =><5@ . A;8 C:070=> , GB> @>3@0<<0 @0A?@>AB@0=O5BAO 2 A>>B25BAB288 A >?@545;5==>9 25@A859 , B .5 . C:070= 55 =><5@ , 8;8 ;N1>9 1>;55 ?>74=59 25@A859 =0AB>OI59 8F5=788 , 8F5=780B 2?@025 ?@8A>548=8BLAO : ;N1>9 87 MB8E 25@A89 8F5=788 , >?C1;8:>20==KE F r e e S o f t w a r e F o u n d a t i o n . A;8 @>3@0<<0 =5 A>45@68B B0:>3> C:070=8O =0 =><5@ 25@A88 8F5=788 8F5=780B 2?@025 ?@8A>548=8BLAO : ;N1>9 87 25@A89 8F5=788 , >?C1;8:>20==KE :>340 -;81> F r e e S o f t w a r e F o u n d a t i o n . 1 0 . A;CG05 5A;8 8F5=780B =0<5@5= 2:;NG8BL G0ABL @>3@0<<K 2 4@C3>5 A2>1>4=>5 ?@>3@0<<=>5 >15A?5G5=85 , :>B>@>5 @0A?@>AB@0=O5BAO =0 8=KE CA;>28OE , G5< 2 =0AB>OI59 8F5=788 , 5<C A;54C5B 8A?@>A8BL ?8AL<5==>5 @07@5H5=85 =0 MB> C 02B>@0 ?@>3@0<<=>3> >15A?5G5=8O . 07@5H5=85 2 >B=>H5=88 ?@>3@0<<=>3> >15A?5G5=8O , ?@020 =0 :>B>@>5 ?@8=04;560B F r e e S o f t w a r e F o u n d a t i o n , A;54C5B 8A?@0H820BL C F r e e S o f t w a r e F o u n d a t i o n . =5:>B>@KE A;CG0OE F r e e S o f t w a r e F o u n d a t i o n 45;05B 8A:;NG5=8O . @8 ?@8=OB88 @5H5=8O F r e e S o f t w a r e F o u n d a t i o n 1C45B @C:>2>4AB2>20BLAO 42C<O F5;O<8 : A>E@0=5=85 AB0BCA0 A2>1>4=>3> 4;O ;N1>3> ?@>872545=8O , ?@>872>4=>3> >B A2>1>4=>3> ?@>3@0<<=>3> >15A?5G5=8O F r e e S o f t w a r e F o u n d a t i o n 8 >15A?5G5=85 =081>;55 H8@>:>3> A>2<5AB=>3> 8A?>;L7>20=8O ?@>3@0<<=>3> >15A?5G5=8O .
"!#"!" " +% /",!" . 1 1 . ! ,# !" /)/ ! !" /"!/ ! " , " !"/."!/ " !" , -" #!"!/ + . !" /)/ !"/"!/ #! /% " !", " . ! # !, $ , " / ", " !/ % " +% /",!" , / + +% , " # +% , " ( + , " '! # #. ". " ! !" / / !" / ! , / " +% &/% , " .+ + " . ! ! , !/ + ! '!" ", !",. + , !" & " . !#' ! ##" # + !"" , ! !% + , !/ + ! "% '! !# , " ! + , !" & " . 1 2 . ! #! " / + ! ! !" !, $ , " / ", , " + $& #" / ! !" /" # #! /% !" /) & , !" ""!" !" & " #+" , .'/ ) , , + , + ! + #+" ( " '! #" "# ! $ & , #+" , ! + & " " ", & , !", "+ + ! . # + #+" ) . " / ", ! ""!" ! !" /) # " !#" ""!" !" " !#' , ! + # + !" / "% #+" . < / p > < / b o d y > < / h t m l > EGNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License.
aboutDialog < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 1 6 p x ; m a r g i n - b o t t o m : 1 2 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; f o n t - s i z e : x - l a r g e ; f o n t - w e i g h t : 6 0 0 ; " > < s p a n s t y l e = " f o n t - s i z e : x - l a r g e ; " > T r a d u c c i o n e s : < / s p a n > < / p > < p s t y l e = " m a r g i n - t o p : 1 4 p x ; m a r g i n - b o t t o m : 1 2 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; f o n t - s i z e : l a r g e ; f o n t - w e i g h t : 6 0 0 ; " > < s p a n s t y l e = " f o n t - s i z e : l a r g e ; " > F r a n c s : < / s p a n > < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > Y a n n C h e m i n < / p > < p s t y l e = " m a r g i n - t o p : 1 4 p x ; m a r g i n - b o t t o m : 1 2 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; f o n t - s i z e : l a r g e ; f o n t - w e i g h t : 6 0 0 ; " > < s p a n s t y l e = " f o n t - s i z e : l a r g e ; " > E s p a o l : < / s p a n > < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > I g n a c i o S e r r a n o A y l l n < / p > < / b o d y > < / h t m l > Translations:
French:
Yann Chemin
aboutDialog < h t m l > < h e a d > < m e t a n a m e = " q r i c h t e x t " c o n t e n t = " 1 " / > < s t y l e t y p e = " t e x t / c s s " > p , l i { w h i t e - s p a c e : p r e - w r a p ; } < / s t y l e > < / h e a d > < b o d y s t y l e = " f o n t - f a m i l y : ' S a n s S e r i f ' ; f o n t - s i z e : 1 2 p t ; f o n t - w e i g h t : 4 0 0 ; f o n t - s t y l e : n o r m a l ; " > < p s t y l e = " m a r g i n - t o p : 1 8 p x ; m a r g i n - b o t t o m : 1 2 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; f o n t - s i z e : x x - l a r g e ; f o n t - w e i g h t : 6 0 0 ; " > < s p a n s t y l e = " f o n t - s i z e : x x - l a r g e ; " > D e v e l o p e r s : < / s p a n > < / p > < p s t y l e = " m a r g i n - t o p : 0 p x ; m a r g i n - b o t t o m : 0 p x ; m a r g i n - l e f t : 0 p x ; m a r g i n - r i g h t : 0 p x ; - q t - b l o c k - i n d e n t : 0 ; t e x t - i n d e n t : 0 p x ; " > F l v i o C o d e o C o e l h o < b r / > C l u d i a T o r r e s C o d e o < / p > < / b o d y > < / h t m l > lDevelopers:
Flávio Codeço Coelho
aboutDialog < s p a n s t y l e = " f o n t - w e i g h t : b o l d ; " > E s t a e s l a v e r s i n d e E p i g r a s s 1 . 5 . 0 < b r > < b r > P a r a m s i n f o r m a c i n s o b r e E p i g r a s s M o r e i n f o r m a t i o n a b o u t E p i g r a s s c a n b e f o u n d a t t h e e p i g r a s s < a h r e f = " h t t p : / / e p i g r a s s . s o u r c e f o r g e . n e t " > w e b s i t e < / a > < / s p a n > This is Epigrass version
1.5.0website aboutDialog ?@>3@0<<5 About aboutDialog 1 E p i g r a s s About Epigrass aboutDialog !>3;0H5=8O Acknowledgements aboutDialog
A l t + C Alt+C aboutDialog 2B>@K Authors aboutDialog 8F5=78O License aboutDialog 'B>1K 8A?>;L7>20BL E p i g r a s s K 4>;6=K A>3;0A8BLAO A MB>9 ;8F5=7859 3To use Epigrass you have to agree with this license aboutDialog
) ,
epigrass-2.4.7/Epigrass/epigrass_ru_RU.ts 0000664 0000000 0000000 00000463305 12720633740 020376 0 ustar root root 0000000 0000000
Editor
Required variable missing
Обязательная переменная отсутствует
Variable %s was missing. Variable created and value set to default
Переменная %s отсутствовала. Переменная создана со значением по умолчанию
Required section missing
Обязательная секция отсутствует
Section %s was missing. It was added to your file with default values for its variables.
Секция %s отсутствовала. Она была добавлена в Ваш файл со значениями по умолчанию для всех переменных.
About .EPG Editor
О программе .EPG Editor
This editor is for creating or modifying .epg files.
Этот редактор предназначен для создания и изменения .epg файлов.
Open .epg File
Открыть .epg файл
*.epg
*.epg
File Name
Имя файла
Enter a name for you new .epg file:
Введите имя Вашего нового .epg файла:
Choose Section
Выберите секцию
Select a section to which you want to add a variable:
Выберите секцию в которую хотите добавить переменную:
Variable Name
Имя переменной
Enter the name of the variable to be created
Введите имя создаваемой переменной
Save File as
Сохранить файл как
Form
Simulation Display
Дисплей симуляции
Geographical View
Географическое изображение
Time Series
Временные ряды
Stop
Стоп
Replay
Повтор
GraphWidget
Network View
Изображение сети
Click and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys
Щёлкните и передвигайте узлы, приближайте и отдаляйте с помощью скрола или клавиш "+" и "-"
MainPanel
Epigrass Control Panel
Панель управления Epigrass
Run Options
Опции запуска
Model Specification
Спецификация модели
Script Name:
Имя скрипта:
write the name of the your script or press the choose button on the right to select one.
Введите имя скрипта или нажмите кнопку "Выбор" справа, чтобы выбрать файл.
Choose
Выбор
Edit
Правка
Database type:
Тип БД:
Select your database type
Выберите тип Вашей БД
MySQL
MySQL
SQLite
SQLite
CSV
CSV
Database Specification
Спецификация БД
Host:
Хост:
Port:
Порт:
This is the url of your database server.
Это url Вашего сервера БД.
localhost
localhost
Enter the port the server listens to.
Выберите порт, который слушает сервер.
3306
3306
Userid:
Имя пользователя:
Password:
Пароль:
This is the userid for accessing the database server
Это идентификатор (имя) пользователя для доступа к серверу БД
Database password for the userid entered
Пароль для введённого имени пользователя БД
Settings
Настройки
Name
Имя
Enter your full name. This will be added to the report.
Введите Ваше полное имя. Оно будет добавлено в отчёт.
Editor
Редактор
Enter your preferred text editor
Введите предпочтительный текстовый редактор
PDF Viewer
Программа просмотра PDF
Enter the name of your preferred PDF viewer
Введите имя предпочтительной программы просмотра PDF
Language
Язык (Language)
Select the language for the GUI
Выберите язык интервейса (GUI)
English
English
Brazilian portuguese
Brazilian portuguese
French
Francés
Utilities
Утилиты
Simulation Status
Состояние симуляции
Database
База данных
Click here to backup the epigrass database
Нажмите для резервного копирования БД epigrass
Backup
Резервная копия
Click here for a short description of the epigrass database
Нажмите для просмотра краткого описания БД epigrass
Info
Информация
Report
Отчёт
Open
Открыть
Visualization
Визуализация
Simulations stored:
Симуляция сохранена:
Select a database stored simulation
Выбор симуляции, хранящейся в БД
Variable to display:
Отображаемая переменная:
Select a variable to display in the animation
Выберите переменную, отображаемую в анимации
Maps available:
Доступные карты:
Select a map
Выбор карты
No map
Без карты
Scan DB
Сканировать БД
Animation rate
Частота анимации
Start 2D animation
Запуск 2D анимации
Start 3D animation
Запуск 3D анимации
Spread Trees
Деревья распределения
Select a directory with tree-files to build consensus on.
Выберите директорию с файлами деревьев, на которых строится консенсус.
Consensus Tree
Деревья консенсуса
Progress:
Прогресс:
Simulation step
Шаг симуляции
Click here to open the userguide in the web browser
Нажмите для просмотра руководства пользователя в веб-браузере
&Help
&Справка
F1
F1
Click here to start your simulation
Нажмите для начала симуляции
&Run
&Запуск
Alt+R
Alt+R
Click here to leave Epigrass
Нажмите для выхода из Epigrass
&Exit
&Выход
Alt+E
Alt+E
MainWindow
.EPG Editor
.EPG редактор
Editor
Редактор
Variable
Переменная
Value
Значение
Description
Описание
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Save file</p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Сохранить файл</p></body></html>
Add variable
Добавить переменную
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Leave the editor.</p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Выход из редактора.</p></body></html>
Exit
Выход
Viewer
Программа просмотра
Help
Справка
Usage help
Справка по использованию
File
Файл
&Help
&Справка
F1
F1
&About
&О программе
About &Epigrass
Об &Epigrass
Auto-&Refresh
Авто-&Обновление
&Open .epg File
&Открыть .epg файл
Ctrl+O
Ctrl+O
&Save
&Сохранить
Ctrl+S
Ctrl+5
E&xit
&Выход
Ctrl+X
Ctrl+X
&Refresh
&Обновить
Ctrl+R
Ctrl+R
&New
&Новый
Ctrl+N
Ctrl+N
Simulation Display
Просмотр симуляции
Click and drag the nodes around, and zoom with the mouse wheel or the '+' and '-' keys
Щёлкните мышью и передвигайте узлаы, используйте скрол и клавиши "+" и "-" для увеличения
Epigrass
Epigrass
Run Options
Параметры запуска
Model Specification
Спецификация модели
Choose
Выбор
Script Name:
имя скрипта:
write the name of the your script or press the choose button on the right to select one.
Введите имя скрипта или нажмите кнопку "Выбор" справа, чтобы выбрать файл.
Edit
Правка
Database Specification
Спецификация БД
Host:
Хост:
Enter the port the server listens to.
Введите номер порта, который слушает сервер..
3306
3306
Port:
Порт:
Database password for the userid entered
Пароль для введённого имени пользователя БД
Password:
Пароль:
Userid:
Имя пользователя:
This is the url of your database server.
Это URL вашего сервера БД.
localhost
localhost
This is the userid for accessing the database server
Это идентификатор (имя пользователя для доступа к серверу БД)
Database type:
Тип БД:
Select your database type
Выберите тип вашей БД
MySQL
MySQL
SQLite
SQLite
CSV
CSV
Settings
Настройки
Enter your full name. This will be added to the report.
Введите Ваше полное имя. Оно будет добавлено в отчёт.
Language
Язык
Select the language for the GUI
Выберите язык для GUI
English
English
Brazilian portuguese
Portugés Brasileño
French
Francés
Spanish
Español
PDF Viewer
Программа просмотра PDF
Name
Имя
Enter your preferred text editor
Введите предпочтительный текстовый редактор
Enter the name of your preferred PDF viewer
Введите имя предпочтительной программы просмотра PDF
Utilities
Утилиты
Simulation Status
Состояние симуляции
Database
БД
Click here to backup the epigrass database
Нажмите здесь для резервного копирования БД epigrass
Backup
Резервная копия
Click here for a short description of the epigrass database
Нажмите здесь для просмотра краткого описания БД epigrass
Info
Информация
Report
Отчёт
Open
Открыть
Visualization
Визуализация
Spread Trees
Деревья распределения
Select a directory with tree-files to build consensus on.
Выберите директорию с файлами деревьев, на которых строится консенсус.
Consensus Tree
Дерево консенсуса
Simulations stored:
Симуляция сохранена:
Select a database stored simulation
Выберите БД, хранящую симуляцию
Variable to display:
Отображаемая переменная:
Select a variable to display in the animation
Выберите переменную, отображаемую в анимации
Maps available:
Доступные карты:
Select a map
Выберите карту
No map
Нет карты
Scan DB
Сканировать БД
Animation rate
Частота анимации
Time steps per second
Число временных шагов в секунду
Start animation
Старт анимации
Progress:
Прогресс:
Simulation step
Шаг симуляции
Click here to open the userguide in the web browser
Нажмите для просмотра руководства пользователя в веб-браузере
Click here to start your simulation
Нажмите для запуска Вашей симуляции
&Run
&Запуск
Alt+R
Alt+R
Click here to leave Epigrass
Нажмите для выхода из Epigrass
&Exit
&Выход
Alt+E
Alt+E
MainWindow_Impl
Syntax Error
Синтаксическая ошибка
Please check file .epigrassrc for missing %s keyword
from section %s
Пожалуйста проверьте .epigrassrc por на предмет
отсутствия ключевого слова %s в секции %s
Incomplete Configuration
Неполная конфигурация
Please enter a value for %s.
Пожалуйста, введите значение для %s.
&OK
&Ок
Editor or Script not selected
Редактор или скрипт не выбран
Please make sure you have selected both
an editor and your model's script.
Пожалуйста убедитесь, что Вы выбрали
как редактор, так и скрипт Вашей модели.
Select your Model's Script
Выбор скрипта модели
*.epg
*.epg
Missing Database Password
Отсутствует пароль БД
Please enter password for MySQL database.
Пожалуйста, введите пароль БД.
Non-local Database Server
Нелокальный сервер БД
Currently, the database backup function only
works on local database servers.
В настоящее время функция резервного копирования
работает только для локальных серверов.
Restore Instructions:
Инструкции восстановления:
The epigrass database has been Backed up
to a file named "epigrass.sql".
This file is in you current working directory.
To restore the database type:
epigrass.sql > mysql
БД Epigrass была скопирована
в файл с именем "epigrass.sql".
Этот файл находится в вашей рабочей директории.
Для восстановления БД введите команду:
epigrass.sql > mysql
No Report
Нет отчёта
Could not open the report.
Make sure you have generated it.
Невозможно открыть отчёт.
Убедитесь что он сгенерирован.
Please enter the password for the MySQL database in the first tab.
Пожалуйста, введите пароль БД MySQL на первой вкладке.
Empty Table
Пустая таблица
You have selected an empty table.
Please select another table from the menu.
Вы выбрали пустую таблицу.
Пожалуйста, выберите другую таблицу из меню.
Select Directory with Tree Files (epipath*.csv)
Выберите директорию с файлами деревьев (epipath* .csv)
Branch Support
Поддержка ветвей
Enter minimum branch support level to display:
Выберите минимальный уровень поддержки ветвей для отображения:
aboutDialog
About Epigrass
Об Epigrass
About
О программе
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">This is Epigrass version 1.5.0<br /><br />More information about Epigrass can be found at the epigrass </span><a href="http://epigrass.sourceforge.net"><span style=" font-weight:600; text-decoration: underline; color:#0000ff;">website</span></a></p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">Это Epigrass версии 2.0.b1<br /><br />Больше информации об Epigrass можно найти на сайте</span><a href="http://epigrass.sourceforge.net"><span style=" font-weight:600; text-decoration: underline; color:#0000ff;">http://epigrass.sourceforge.net</span></a></p></body></html>
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<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">Epigrass</span>: </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">EPI</span>demiological </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">G</span>eo-<span style=" font-weight:600;">R</span>eferenced </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">A</span>nalysis and </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>imulation </p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>ystem</p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">Epigrass</span>: </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">EPI</span>demiological </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">G</span>eo-<span style=" font-weight:600;">R</span>eferenced </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">A</span>nalysis and </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>imulation </p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">S</span>ystem</p></body></html>
Authors
Авторы
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<p style=" margin-top:18px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:xx-large; font-weight:600;"><span style=" font-size:xx-large;">Developers:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Flávio Codeço Coelho<br />Cláudia Torres Codeço </p></body></html>
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Acknowledgements
Соглашения
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<p style=" margin-top:16px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:x-large; font-weight:600;"><span style=" font-size:x-large;">Translations:</span></p>
<p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">French:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Yann Chemin </p></body></html>
<html><head><meta name="qrichtext" content="1" /><style type="text/css">p, li { white-space: pre-wrap; }</style></head><body style=" font-family:'Sans Serif'; font-size:12pt; font-weight:400; font-style:normal;"><p style=" margin-top:16px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:x-large; font-weight:600;"><span style=" font-size:x-large;">Traducciones:</span></p><p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">Francés:</span></p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Yann Chemin </p><p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">Español:</span></p><p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Ignacio Serrano Ayllón </p></body></html>
License
Лицензия
To use Epigrass you have to agree with this license
Чтобы использовать Epigrass Вы должны согласиться с этой лицензией
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<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. </p></body></html>
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GNU GENERAL PUBLIC LICENSEВерсия 2, июнь 1991г.Copyright (C) 1989, 1991 Free Software Foundation, Inc.59 Temple Place - Suite 330, Boston, MA 02111-1307, USAКаждый вправе копировать и распространять экземпляры настоящей Лицензии без внесения изменений в ее текст. Преамбула. Большинство лицензий на программное обеспечение лишаeт вас права распространять и вносить изменения в это программное обеспечение. Стандартная Общественная Лицензия GNU, напротив, разработана с целью гарантировать вам право совместно использовать и вносить изменения в свободное программное обеспечение, т.е. обеспечить свободный доступ к программному обеспечению для всех пользователей. Условия настоящей Стандартной Общественной Лицензии применяются к большей части программного обеспечения Free Software Foundation, а также к любому другому программному обеспечению по желанию его автора. (К некоторому программному обеспечению Free Software Foundation применяются условия Стандартной Общественной Лицензии GNU для Библиотек). Вы также можете применять Стандартную Общественную Лицензию к разработанному вами программному обеспечению.Говоря о свободном программном обеспечении, мы имеем в виду свободу, а не безвозмездность. Настоящая Стандартная Общественная Лицензия разработана с целью гарантировать вам право распространять экземпляры свободного программного обеспечения (и при желании получать за это вознаграждение), право получать исходный текст программного обеспечения или иметь возможность его получить, право вносить изменения в программное обеспечение или использовать его части в новом свободном программном обеспечении, а также право знать, что вы имеете все вышеперечисленные права.Чтобы защитить ваши права, мы вводим ряд ограничений с тем, чтобы никто не имел возможности лишить вас этих прав или обратиться к вам с предложением отказаться от этих прав. Данные ограничения налагают на вас определенные обязанности в случае, если вы распространяете экземпляры программного обеспечения или модифицируете программное обеспечение.Например, если вы распространяете экземпляры такого программного обеспечения за плату или бесплатно, вы обязаны передать новым обладателям все права в том же объеме, в каком они принадлежат вам. Вы обязаны обеспечить получение новыми обладателями программы ее исходного текста или возможность его получить. Вы также обязаны ознакомить их с условиями настоящей Лицензии.Для защиты ваших прав мы: (1) оставляем за собой авторские права на программное обеспечение и (2) предлагаем вам использовать настоящую Лицензию, в соответствии с условиями которой вы вправе воспроизводить, распространять и/или модифицировать программное обеспечение.Кроме того, для защиты как нашей репутации, так и репутации других авторов программного обеспечения, мы уведомляем всех пользователей, что на данное программное обеспечение никаких гарантий не предоставляется. Те, кто приобрел программное обеспечение, с внесенными в него третьими лицами изменениями, должны знать, что они получают не оригинал, в силу чего автор оригинала не несет ответственности за ошибки в работе программного обеспечения, допущенные третьими лицами при внесении изменений.Наконец, программное обеспечение перестает быть свободным в случае, если лицо приобретает на него исключительные права [1]. Недопустимо, чтобы лица, распространяющие свободное программное обеспечение, могли приобрести исключительные права на использование данного программного обеспечения и зарегистрировать их в Патентном ведомстве. Чтобы избежать этого, мы заявляем, что обладатель исключительных прав обязан предоставить любому лицу права на использование программного обеспечения либо не приобретать исключительных прав вообще.Ниже изложены условия воспроизведения, распространения и модификации программного обеспечения.Условия воспроизведения, распространения и модификации0. Условия настоящей Лицензии применяются ко всем видам программного обеспечения или любому иному произведению, которое содержит указание правообладателя на то, что данное произведение может распространяться на условиях Стандартной Общественной Лицензии. Под термином "Программа" далее понимается любое подобное программное обеспечение или иное произведение. Под термином "произведение, производное от Программы" понимается Программа или любое иное производное произведение в соответствии с законодательством об авторском праве [2], т.е. произведение, включающее в себя Программу или ее часть, как с внесенными в ее текст изменениями, так и без них и/или переведенную на другой язык. (Здесь и далее, понятие "модификация" включает в себя понятие перевода в самом широком смысле). Каждый приобретатель экземпляра Программы именуется в дальнейшем "Лицензиат".Действие настоящей Лицензии не распространяется на осуществление иных прав, кроме воспроизведения, распространения и модификации программного обеспечения. Не устанавливается ограничений на запуск Программы. Условия Лицензии распространяются на выходные данные из Программы только в том случае, если их содержание составляет произведение, производное от Программы (независимо от того, было ли такое произведение создано в результате запуска Программы). Это зависит от того, какие функции выполняет Программа.1. Лицензиат вправе изготовлять и распространять экземпляры исходного текста Программы в том виде, в каком он его получил, без внесения в него изменений на любом носителе, при соблюдении следующих условий: на каждом экземпляре помещен знак охраны авторского права и уведомление об отсутствии гарантий; оставлены без изменений все уведомления, относящиеся к настоящей Лицензии и отсутствию гарантий; вместе с экземпляром Программы приобретателю передается копия настоящей Лицензии.Лицензиат вправе взимать плату за передачу экземпляра Программы, а также вправе за плату оказывать услуги по гарантийной поддержке Программы.2. Лицензиат вправе модифицировать свой экземпляр или экземпляры Программы полностью или любую ее часть. Данные действия Лицензиата влекут за собой создание произведения, производного от Программы. Лицензиат вправе изготовлять и распространять экземпляры такого произведения, производного от Программы, или собственно экземпляры изменений в соответствии с пунктом 1 настоящей Лицензии при соблюдении следующих условий:а) файлы, измененные Лицензиатом, должны содержать хорошо заметную пометку, что они были изменены, а также дату внесения изменений;b) при распространении или публикации Лицензиатом любого произведения, которое содержит Программу или ее часть или является производным от Программы или от ее части, Лицензиат обязан передавать права на использование данного произведения третьим лицам на условиях настоящей Лицензии, при этом Лицензиат не вправе требовать уплаты каких-либо лицензионных платежей. Распространяемое произведение лицензируется как одно целое;c) если модифицированная Программа при запуске обычно читает команды в интерактивном режиме, Лицензиат обязан обеспечить вывод на экран дисплея или печатающее устройство сообщения, которое должно включать в себя:знак охраны авторского права;уведомление об отсутствии гарантий на Программу (или иное, если Лицензиат предоставляет гарантии);указание на то, что пользователи вправе распространять экземпляры Программы в соответствии с условиями настоящей Лицензии, а также на то, каким образом пользователь может ознакомиться с текстом настоящей Лицензии. (Исключение: если оригинальная Программа является интерактивной, но не выводит в своем обычном режиме работы сообщение такого рода, то вывод подобного сообщения произведением, производным от Программы, в этом случае не обязателен).Вышеуказанные условия применяются к модифицированному произведению, производному от Программы, в целом. В случае если отдельные части данного произведения не являются производными от Программы, являются результатом творческой деятельности и могут быть использованы как самостоятельное произведение, Лицензиат вправе распространять отдельно такое произведение на иных лицензионных условиях. В случае если Лицензиат распространяет вышеуказанные части в составе произведения, производного от Программы, то условия настоящей Лицензии применяются к произведению в целом, при этом права, приобретаемые сублицензиатами на основании Лицензии, передаются им в отношении всего произведения, включая все его части, независимо от того, кто является их авторами.Целью настоящего пункта 2 не является заявление прав или оспаривание прав на произведение, созданное исключительно Лицензиатом. Целью настоящего пункта является обеспечение права контролировать распространение произведений, производных от Программы, и составных произведений, производных от Программы.Размещение произведения, которое не является производным от Программы, на одном устройстве для хранения информации или носителе вместе с Программой или произведением, производным от Программы, не влечет за собой распространения условий настоящей Лицензии на такое произведение.3. Лицензиат вправе воспроизводить и распространять экземпляры Программы или произведения, которое является производным от Программы, в соответствии с пунктом 2 настоящей Лицензии, в виде объектного кода или в исполняемой форме в соответствии с условиями п.п.1 и 2 настоящей Лицензии при соблюдении одного из перечисленных ниже условий:а) к экземпляру должен прилагаться соответствующий полный исходный текст в машиночитаемой форме, который должен распространяться в соответствии с условиями п.п. 1 и 2 настоящей Лицензии на носителе, обычно используемом для передачи программного обеспечения, либоb) к экземпляру должно прилагаться действительное в течение трех лет предложение в письменной форме к любому третьему лицу передать за плату, не превышающую стоимость осуществления собственно передачи, экземпляр соответствующего полного исходного текста в машиночитаемой форме в соответствии с условиями п.п. 1 и 2 настоящей Лицензии на носителе, обычно используемом для передачи программного обеспечения, либоc) к экземпляру должна прилагаться полученная Лицензиатом информация о предложении, в соответствии с которым можно получить соответствующий исходный текст. (Данное положение применяется исключительно в том случае, если Лицензиат осуществляет некоммерческое распространение программы, при этом программа была получена самим Лицензиатом в виде объектного кода или в исполняемой форме и сопровождалась предложением, соответствующим условиям пп.b п.3 настоящей Лицензии).Под исходным текстом произведения понимается такая форма произведения, которая наиболее удобна для внесения изменений. Под полным исходным текстом исполняемого произведения понимается исходный текст всех составляющих произведение модулей, а также всех файлов, связанных с описанием интерфейса, и сценариев, предназначенных для управления компиляцией и установкой исполняемого произведения. Однако, в качестве особого исключения, распространяемый исходный текст может не включать того, что обычно распространяется (в виде исходного текста или в бинарной форме) с основными компонентами (компилятор, ядро и т.д.) операционной системы, в которой работает исполняемое произведение, за исключением случаев, когда исполняемое произведение сопровождается таким компонентом.В случае если произведение в виде объектного кода или в исполняемой форме распространяется путем предоставления доступа для копирования его из определенного места, обеспечение равноценного доступа для копирования исходного текста из этого же места удовлетворяет требованиям распространения исходного текста, даже если третьи лица при этом не обязаны копировать исходный текст вместе с объектным кодом произведения.4. Лицензиат вправе воспроизводить, модифицировать, распространять или передавать права на использование Программы только на условиях настоящей Лицензии. Любое воспроизведение, модификация, распространение или передача прав на иных условиях являются недействительными и автоматически ведут к расторжению настоящей Лицензии и прекращению всех прав Лицензиата, предоставленных ему настоящей Лицензией. При этом права третьих лиц, которым Лицензиат в соответствии с настоящей Лицензией передал экземпляры Программы или права на нее, сохраняются в силе при условии полного соблюдения ими настоящей Лицензии.5. Лицензиат не обязан присоединяться к настоящей Лицензии, поскольку он ее не подписал. Однако только настоящая Лицензия предоставляет право распространять или модифицировать Программу или произведение, производное от Программы. Подобные действия нарушают действующее законодательство, если они не осуществляются в соответствии с настоящей Лицензией. Если Лицензиат внес изменения или осуществил распространение экземпляров Программы или произведения, производного от Программы, Лицензиат тем самым подтвердил свое присоединение к настоящей Лицензии в целом, включая условия, определяющие порядок воспроизведения, распространения или модификации Программы или произведения, производного от Программы.6. При распространении экземпляров Программы или произведения, производного от Программы, первоначальный лицензиар автоматически передает приобретателю такого экземпляра право воспроизводить, распространять и модифицировать Программу в соответствии с условиями настоящей Лицензии. Лицензиат не вправе ограничивать каким-либо способом осуществление приобретателями полученных ими прав. Лицензиат не несет ответственности за несоблюдение условий настоящей Лицензии третьими лицами.7. Лицензиат не освобождается от исполнения обязательств в соответствии с настоящей Лицензией в случае, если в результате решения суда или заявления о нарушении исключительных прав или в связи с наступлением иных обстоятельств, не связанных непосредственно с нарушением исключительных прав, на Лицензиата на основании решения суда, договора или ином основании возложены обязательства, которые противоречат условиям настоящей Лицензии. В этом случае Лицензиат не вправе распространять экземпляры Программы, если он не может одновременно исполнить условия настоящей Лицензии и возложенные на него указанным выше способом обязательства. Например, если по условиям лицензионного соглашения сублицензиатам не может быть предоставлено право бесплатного распространения экземпляров Программы, которые они приобрели напрямую или через третьих лиц у Лицензиата, то в этом случае Лицензиат обязан отказаться от распространения экземпляров Программы.Если любое положение настоящего пункта при наступлении конкретных обстоятельств будет признано недействительным или неприменимым, настоящий пункт применяется за исключением такого положения. Настоящий пункт применяется в целом при прекращении вышеуказанных обстоятельств или их отсутствии.Целью данного пункта не является принуждение Лицензиата к нарушению патента или заявления на иные права собственности или к оспариванию действительности такого заявления. Единственной целью данного пункта является защита неприкосновенности системы распространения свободного программного обеспечения, которая обеспечивается за счет общественного лицензирования. Многие люди внесли свой щедрый вклад в создание большого количества программного обеспечения, которое распространяется через данную систему в надежде на ее длительное и последовательное применение. Лицензиат не вправе вынуждать автора распространять программное обеспечение через данную систему. Право выбора системы распространения программного обеспечения принадлежит исключительно его автору.Настоящий пункт 7 имеет целью четко определить те цели, которые преследуют все остальные положения настоящей Лицензии.8. В том случае если распространение и/или использование Программы в отдельных государствах ограничено соглашениями в области патентных или авторских прав, первоначальный правообладатель, распространяющий Программу на условиях настоящей Лицензии, вправе ограничить территорию распространения Программы, указав только те государства, на территории которых допускается распространение Программы без ограничений, обусловленных такими соглашениями. В этом случае такое указание в отношении территорий определенных государств признается одним из условий настоящей Лицензии.9. Free Software Foundation может публиковать исправленные и/или новые версии настоящей Стандартной Общественной Лицензии. Такие версии могут быть дополнены различными нормами, регулирующими правоотношения, которые возникли после опубликования предыдущих версий, однако в них будут сохранены основные принципы, закрепленные в настоящей версии.Каждой версии присваивается свой собственный номер. Если указано, что Программа распространяется в соответствии с определенной версией, т.е. указан ее номер, или любой более поздней версией настоящей Лицензии, Лицензиат вправе присоединиться к любой из этих версий Лицензии, опубликованных Free Software Foundation. Если Программа не содержит такого указания на номер версии Лицензии Лицензиат вправе присоединиться к любой из версий Лицензии, опубликованных когда-либо Free Software Foundation.10. В случае если Лицензиат намерен включить часть Программы в другое свободное программное обеспечение, которое распространяется на иных условиях, чем в настоящей Лицензии, ему следует испросить письменное разрешение на это у автора программного обеспечения. Разрешение в отношении программного обеспечения, права на которое принадлежат Free Software Foundation, следует испрашивать у Free Software Foundation. В некоторых случаях Free Software Foundation делает исключения. При принятии решения Free Software Foundation будет руководствоваться двумя целями: сохранение статуса свободного для любого произведения, производного от свободного программного обеспечения Free Software Foundation и обеспечение наиболее широкого совместного использования программного обеспечения.
ОТСУТСТВИЕ ГАРАНТИЙНЫХ ОБЯЗАТЕЛЬСТВ.11. ПОСКОЛЬКУ НАСТОЯЩАЯ ПРОГРАММА РАСПРОСТРАНЯЕТСЯ БЕСПЛАТНО, ГАРАНТИИ НА НЕЕ НЕ ПРЕДОСТАВЛЯЮТСЯ В ТОЙ СТЕПЕНИ, В КАКОЙ ЭТО ДОПУСКАЕТСЯ ПРИМЕНИМЫМ ПРАВОМ. НАСТОЯЩАЯ ПРОГРАММА ПОСТАВЛЯЕТСЯ НА УСЛОВИЯХ "КАК ЕСТЬ". ЕСЛИ ИНОЕ НЕ УКАЗАНО В ПИСЬМЕННОЙ ФОРМЕ, АВТОР И/ИЛИ ИНОЙ ПРАВООБЛАДАТЕЛЬ НЕ ПРИНИМАЕТ НА СЕБЯ НИКАКИХ ГАРАНТИЙНЫХ ОБЯЗАТЕЛЬСТВ, КАК ЯВНО ВЫРАЖЕННЫХ, ТАК И ПОДРАЗУМЕВАЕМЫХ, В ОТНОШЕНИИ ПРОГРАММЫ, В ТОМ ЧИСЛЕ ПОДРАЗУМЕВАЕМУЮ ГАРАНТИЮ ТОВАРНОГО СОСТОЯНИЯ ПРИ ПРОДАЖЕ И ПРИГОДНОСТИ ДЛЯ ИСПОЛЬЗОВАНИЯ В КОНКРЕТНЫХ ЦЕЛЯХ, А ТАКЖЕ ЛЮБЫЕ ИНЫЕ ГАРАНТИИ. ВСЕ РИСКИ, СВЯЗАННЫЕ С КАЧЕСТВОМ И ПРОИЗВОДИТЕЛЬНОСТЬЮ ПРОГРАММЫ, НЕСЕТ ЛИЦЕНЗИАТ. В СЛУЧАЕ ЕСЛИ В ПРОГРАММЕ БУДУТ ОБНАРУЖЕНЫ НЕДОСТАТКИ, ВСЕ РАСХОДЫ, СВЯЗАННЫЕ С ТЕХНИЧЕСКИМ ОБСЛУЖИВАНИЕМ, РЕМОНТОМ ИЛИ ИСПРАВЛЕНИЕМ ПРОГРАММЫ, НЕСЕТ ЛИЦЕНЗИАТ.12. ЕСЛИ ИНОЕ НЕ ПРЕДУСМОТРЕНО ПРИМЕНЯЕМЫМ ПРАВОМ ИЛИ НЕ СОГЛАСОВАНО СТОРОНАМИ В ДОГОВОРЕ В ПИСЬМЕННОЙ ФОРМЕ, АВТОР И/ИЛИ ИНОЙ ПРАВООБЛАДАТЕЛЬ, КОТОРЫЙ МОДИФИЦИРУЕТ И/ИЛИ РАСПРОСТРАНЯЕТ ПРОГРАММУ НА УСЛОВИЯХ НАСТОЯЩЕЙ ЛИЦЕНЗИИ, НЕ НЕСЕТ ОТВЕТСТВЕННОСТИ ПЕРЕД ЛИЦЕНЗИАТОМ ЗА УБЫТКИ, ВКЛЮЧАЯ ОБЩИЕ, РЕАЛЬНЫЕ, ПРЕДВИДИМЫЕ И КОСВЕННЫЕ УБЫТКИ (В ТОМ ЧИСЛЕ УТРАТУ ИЛИ ИСКАЖЕНИЕ ИНФОРМАЦИИ, УБЫТКИ, ПОНЕСЕННЫЕ ЛИЦЕНЗИАТОМ ИЛИ ТРЕТЬИМИ ЛИЦАМИ, НЕВОЗМОЖНОСТЬ РАБОТЫ ПРОГРАММЫ С ЛЮБОЙ ДРУГОЙ ПРОГРАММОЙ И ИНЫЕ УБЫТКИ). АВТОР И/ИЛИ ИНОЙ ПРАВООБЛАДАТЕЛЬ В СООТВЕТСТВИИ С НАСТОЯЩИМ ПУНКТОМ НЕ НЕСУТ ОТВЕТСТВЕННОСТИ ДАЖЕ В ТОМ СЛУЧАЕ, ЕСЛИ ОНИ БЫЛИ ПРЕДУПРЕЖДЕНЫ О ВОЗМОЖНОСТИ ВОЗНИКНОВЕНИЯ ТАКИХ УБЫТКОВ.</p></body></html>
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<span style="font-weight: bold;">This is Epigrass version
1.5.0<br>
<br>
More information about Epigrass can be found at the epigrass <a
href="http://epigrass.sourceforge.net">website</a></span>
<span style="font-weight: bold;">Esta es la versión de Epigrass1.5.0<br><br>Para más información sobre Epigrass More information about Epigrass can be found at the epigrass <a href="http://epigrass.sourceforge.net">website</a></span>
<h1>Developers:</h1>
Flávio Codeço Coelho<br>
Cláudia Torres Codeço
<h1>Desarrolladores:</h1>Flávio Codeço Coelho<br>Cláudia Torres Codeço
<h2>Translations:</h2>
<h3>French:</h3>
Yann Chemin
<h2>Traducciones:</h2><h3>Francés:</h3>Yann Chemin<h3>Español:</h3>Ignacio Serrano Ayllón
<b>Epigrass</b>:
<b>EPI</b>demiological
<b>G</b>eo-<b>R</b>eferenced
<b>A</b>nalysis and
<b>S</b>imulation
<b>S</b>ystem
<b>Epigrass</b>:<b>EPI</b>demiological <b>G</b>eo-<b>R</b>eferenced <b>A</b>nalysis and <b>S</b>imulation <b>S</b>ystem
GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
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When we speak of free software, we are referring to freedom, not
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GNU GENERAL PUBLIC LICENSE
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
0. This License applies to any program or other work which contains
a notice placed by the copyright holder saying it may be distributed
under the terms of this General Public License. The "Program", below,
refers to any such program or work, and a "work based on the Program"
means either the Program or any derivative work under copyright law:
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either verbatim or with modifications and/or translated into another
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the term "modification".) Each licensee is addressed as "you".
Activities other than copying, distribution and modification are not
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is covered only if its contents constitute a work based on the
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Whether that is true depends on what the Program does.
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conspicuously and appropriately publish on each copy an appropriate
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and give any other recipients of the Program a copy of this License
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you may at your option offer warranty protection in exchange for a fee.
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These requirements apply to the modified work as a whole. If
identifiable sections of that work are not derived from the Program,
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This section is intended to make thoroughly clear what is believed to
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END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) <year> <name of author>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) year name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
<signature of Ty Coon>, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'DejaVu Sans'; font-size:10pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">This is Epigrass version 2.0a1<br /><br />More information about Epigrass can be found at the epigrass </span><a href="http://epigrass.sourceforge.net"><span style=" font-weight:600; text-decoration: underline; color:#0057ae;">website</span></a></p></body></html>
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'DejaVu Sans'; font-size:10pt; font-weight:400; font-style:normal;">
<p style=" margin-top:18px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:xx-large; font-weight:600;"><span style=" font-size:xx-large;">Developers:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Flávio Codeço Coelho<br />Cláudia Torres Codeço </p></body></html>
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'DejaVu Sans'; font-size:10pt; font-weight:400; font-style:normal;">
<p style=" margin-top:16px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:x-large; font-weight:600;"><span style=" font-size:x-large;">Translations:</span></p>
<p style=" margin-top:14px; margin-bottom:12px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:large; font-weight:600;"><span style=" font-size:large;">French:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Yann Chemin </p>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:12pt; font-weight:600;">Spanish:</span></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-weight:600;"><span style=" font-weight:400;">Naco Serrano</span></p></body></html>
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'DejaVu Sans'; font-size:10pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. </p></body></html>
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const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;
#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0
#define __PYX_DEFAULT_STRING_ENCODING ""
#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#define __Pyx_uchar_cast(c) ((unsigned char)c)
#define __Pyx_long_cast(x) ((long)x)
#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\
(sizeof(type) < sizeof(Py_ssize_t)) ||\
(sizeof(type) > sizeof(Py_ssize_t) &&\
likely(v < (type)PY_SSIZE_T_MAX ||\
v == (type)PY_SSIZE_T_MAX) &&\
(!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
v == (type)PY_SSIZE_T_MIN))) ||\
(sizeof(type) == sizeof(Py_ssize_t) &&\
(is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
v == (type)PY_SSIZE_T_MAX))) )
#if defined (__cplusplus) && __cplusplus >= 201103L
#include
#define __Pyx_sst_abs(value) std::abs(value)
#elif SIZEOF_INT >= SIZEOF_SIZE_T
#define __Pyx_sst_abs(value) abs(value)
#elif SIZEOF_LONG >= SIZEOF_SIZE_T
#define __Pyx_sst_abs(value) labs(value)
#elif defined (_MSC_VER) && defined (_M_X64)
#define __Pyx_sst_abs(value) _abs64(value)
#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
#define __Pyx_sst_abs(value) llabs(value)
#elif defined (__GNUC__)
#define __Pyx_sst_abs(value) __builtin_llabs(value)
#else
#define __Pyx_sst_abs(value) ((value<0) ? -value : value)
#endif
static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*);
static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
#define __Pyx_PyBytes_FromString PyBytes_FromString
#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
#if PY_MAJOR_VERSION < 3
#define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString
#define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#else
#define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString
#define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
#endif
#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s)
#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s)
#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s)
#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s)
#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
#if PY_MAJOR_VERSION < 3
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
{
const Py_UNICODE *u_end = u;
while (*u_end++) ;
return (size_t)(u_end - u - 1);
}
#else
#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen
#endif
#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
#define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False))
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
#if CYTHON_COMPILING_IN_CPYTHON
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
#else
#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
#endif
#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
#else
#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
#endif
#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
static int __Pyx_sys_getdefaultencoding_not_ascii;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
PyObject* sys;
PyObject* default_encoding = NULL;
PyObject* ascii_chars_u = NULL;
PyObject* ascii_chars_b = NULL;
const char* default_encoding_c;
sys = PyImport_ImportModule("sys");
if (!sys) goto bad;
default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
Py_DECREF(sys);
if (!default_encoding) goto bad;
default_encoding_c = PyBytes_AsString(default_encoding);
if (!default_encoding_c) goto bad;
if (strcmp(default_encoding_c, "ascii") == 0) {
__Pyx_sys_getdefaultencoding_not_ascii = 0;
} else {
char ascii_chars[128];
int c;
for (c = 0; c < 128; c++) {
ascii_chars[c] = c;
}
__Pyx_sys_getdefaultencoding_not_ascii = 1;
ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
if (!ascii_chars_u) goto bad;
ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
PyErr_Format(
PyExc_ValueError,
"This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
default_encoding_c);
goto bad;
}
Py_DECREF(ascii_chars_u);
Py_DECREF(ascii_chars_b);
}
Py_DECREF(default_encoding);
return 0;
bad:
Py_XDECREF(default_encoding);
Py_XDECREF(ascii_chars_u);
Py_XDECREF(ascii_chars_b);
return -1;
}
#endif
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
#else
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
static char* __PYX_DEFAULT_STRING_ENCODING;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
PyObject* sys;
PyObject* default_encoding = NULL;
char* default_encoding_c;
sys = PyImport_ImportModule("sys");
if (!sys) goto bad;
default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
Py_DECREF(sys);
if (!default_encoding) goto bad;
default_encoding_c = PyBytes_AsString(default_encoding);
if (!default_encoding_c) goto bad;
__PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c));
if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
Py_DECREF(default_encoding);
return 0;
bad:
Py_XDECREF(default_encoding);
return -1;
}
#endif
#endif
/* Test for GCC > 2.95 */
#if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
#define likely(x) __builtin_expect(!!(x), 1)
#define unlikely(x) __builtin_expect(!!(x), 0)
#else /* !__GNUC__ or GCC < 2.95 */
#define likely(x) (x)
#define unlikely(x) (x)
#endif /* __GNUC__ */
static PyObject *__pyx_m;
static PyObject *__pyx_d;
static PyObject *__pyx_b;
static PyObject *__pyx_empty_tuple;
static PyObject *__pyx_empty_bytes;
static PyObject *__pyx_empty_unicode;
static int __pyx_lineno;
static int __pyx_clineno = 0;
static const char * __pyx_cfilenm= __FILE__;
static const char *__pyx_filename;
static const char *__pyx_f[] = {
"Epigrass/epimodels.py",
};
/*--- Type declarations ---*/
/* --- Runtime support code (head) --- */
/* Refnanny.proto */
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void (*DECREF)(void*, PyObject*, int);
void (*GOTREF)(void*, PyObject*, int);
void (*GIVEREF)(void*, PyObject*, int);
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#define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0)
#define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0)
#define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0)
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#define __Pyx_RefNannyDeclarations
#define __Pyx_RefNannySetupContext(name, acquire_gil)
#define __Pyx_RefNannyFinishContext()
#define __Pyx_INCREF(r) Py_INCREF(r)
#define __Pyx_DECREF(r) Py_DECREF(r)
#define __Pyx_GOTREF(r)
#define __Pyx_GIVEREF(r)
#define __Pyx_XINCREF(r) Py_XINCREF(r)
#define __Pyx_XDECREF(r) Py_XDECREF(r)
#define __Pyx_XGOTREF(r)
#define __Pyx_XGIVEREF(r)
#endif
#define __Pyx_XDECREF_SET(r, v) do {\
PyObject *tmp = (PyObject *) r;\
r = v; __Pyx_XDECREF(tmp);\
} while (0)
#define __Pyx_DECREF_SET(r, v) do {\
PyObject *tmp = (PyObject *) r;\
r = v; __Pyx_DECREF(tmp);\
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#define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
#define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)
/* PyObjectGetAttrStr.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
PyTypeObject* tp = Py_TYPE(obj);
if (likely(tp->tp_getattro))
return tp->tp_getattro(obj, attr_name);
#if PY_MAJOR_VERSION < 3
if (likely(tp->tp_getattr))
return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
#endif
return PyObject_GetAttr(obj, attr_name);
}
#else
#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
#endif
/* GetBuiltinName.proto */
static PyObject *__Pyx_GetBuiltinName(PyObject *name);
/* RaiseArgTupleInvalid.proto */
static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);
/* RaiseDoubleKeywords.proto */
static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);
/* ParseKeywords.proto */
static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\
PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\
const char* function_name);
/* ArgTypeTest.proto */
static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
const char *name, int exact);
/* GetModuleGlobalName.proto */
static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name);
/* PyObjectCall.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
#else
#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
#endif
/* PyObjectCallMethO.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
#endif
/* PyObjectCallOneArg.proto */
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);
/* PyObjectSetAttrStr.proto */
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o,n,NULL)
static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) {
PyTypeObject* tp = Py_TYPE(obj);
if (likely(tp->tp_setattro))
return tp->tp_setattro(obj, attr_name, value);
#if PY_MAJOR_VERSION < 3
if (likely(tp->tp_setattr))
return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value);
#endif
return PyObject_SetAttr(obj, attr_name, value);
}
#else
#define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n)
#define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v)
#endif
/* PyObjectCallNoArg.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func);
#else
#define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL)
#endif
/* ListCompAppend.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) {
PyListObject* L = (PyListObject*) list;
Py_ssize_t len = Py_SIZE(list);
if (likely(L->allocated > len)) {
Py_INCREF(x);
PyList_SET_ITEM(list, len, x);
Py_SIZE(list) = len+1;
return 0;
}
return PyList_Append(list, x);
}
#else
#define __Pyx_ListComp_Append(L,x) PyList_Append(L,x)
#endif
/* RaiseTooManyValuesToUnpack.proto */
static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
/* RaiseNeedMoreValuesToUnpack.proto */
static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
/* IterFinish.proto */
static CYTHON_INLINE int __Pyx_IterFinish(void);
/* UnpackItemEndCheck.proto */
static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected);
/* IncludeStringH.proto */
#include
/* BytesEquals.proto */
static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals);
/* Import.proto */
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);
/* PyThreadStateGet.proto */
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
#define __Pyx_PyThreadState_assign __pyx_tstate = PyThreadState_GET();
#else
#define __Pyx_PyThreadState_declare
#define __Pyx_PyThreadState_assign
#endif
/* SaveResetException.proto */
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
#else
#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb)
#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb)
#endif
/* PyErrExceptionMatches.proto */
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
#else
#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err)
#endif
/* GetException.proto */
#if CYTHON_COMPILING_IN_CPYTHON
#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb)
static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
#else
static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
#endif
/* PySequenceContains.proto */
static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) {
int result = PySequence_Contains(seq, item);
return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
}
/* PyIntBinop.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx_PyInt_SubtractCObj(PyObject *op1, PyObject *op2, long intval, int inplace);
#else
#define __Pyx_PyInt_SubtractCObj(op1, op2, intval, inplace)\
(inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2))
#endif
/* UnicodeEquals.proto */
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals);
/* StrEquals.proto */
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
#else
#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
#endif
/* None.proto */
static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname);
/* ImportFrom.proto */
static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name);
/* CalculateMetaclass.proto */
static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases);
/* FetchCommonType.proto */
static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type);
/* CythonFunction.proto */
#define __Pyx_CyFunction_USED 1
#include
#define __Pyx_CYFUNCTION_STATICMETHOD 0x01
#define __Pyx_CYFUNCTION_CLASSMETHOD 0x02
#define __Pyx_CYFUNCTION_CCLASS 0x04
#define __Pyx_CyFunction_GetClosure(f)\
(((__pyx_CyFunctionObject *) (f))->func_closure)
#define __Pyx_CyFunction_GetClassObj(f)\
(((__pyx_CyFunctionObject *) (f))->func_classobj)
#define __Pyx_CyFunction_Defaults(type, f)\
((type *)(((__pyx_CyFunctionObject *) (f))->defaults))
#define __Pyx_CyFunction_SetDefaultsGetter(f, g)\
((__pyx_CyFunctionObject *) (f))->defaults_getter = (g)
typedef struct {
PyCFunctionObject func;
#if PY_VERSION_HEX < 0x030500A0
PyObject *func_weakreflist;
#endif
PyObject *func_dict;
PyObject *func_name;
PyObject *func_qualname;
PyObject *func_doc;
PyObject *func_globals;
PyObject *func_code;
PyObject *func_closure;
PyObject *func_classobj;
void *defaults;
int defaults_pyobjects;
int flags;
PyObject *defaults_tuple;
PyObject *defaults_kwdict;
PyObject *(*defaults_getter)(PyObject *);
PyObject *func_annotations;
} __pyx_CyFunctionObject;
static PyTypeObject *__pyx_CyFunctionType = 0;
#define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code)\
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static PyObject *__Pyx_CyFunction_New(PyTypeObject *, PyMethodDef *ml,
int flags, PyObject* qualname,
PyObject *self,
PyObject *module, PyObject *globals,
PyObject* code);
static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m,
size_t size,
int pyobjects);
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m,
PyObject *tuple);
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m,
PyObject *dict);
static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m,
PyObject *dict);
static int __pyx_CyFunction_init(void);
/* Py3ClassCreate.proto */
static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, PyObject *qualname,
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static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases, PyObject *dict,
PyObject *mkw, int calculate_metaclass, int allow_py2_metaclass);
/* CodeObjectCache.proto */
typedef struct {
PyCodeObject* code_object;
int code_line;
} __Pyx_CodeObjectCacheEntry;
struct __Pyx_CodeObjectCache {
int count;
int max_count;
__Pyx_CodeObjectCacheEntry* entries;
};
static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
static PyCodeObject *__pyx_find_code_object(int code_line);
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);
/* AddTraceback.proto */
static void __Pyx_AddTraceback(const char *funcname, int c_line,
int py_line, const char *filename);
/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
/* Print.proto */
static int __Pyx_Print(PyObject*, PyObject *, int);
#if CYTHON_COMPILING_IN_PYPY || PY_MAJOR_VERSION >= 3
static PyObject* __pyx_print = 0;
static PyObject* __pyx_print_kwargs = 0;
#endif
/* CIntFromPy.proto */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
/* GetAttr.proto */
static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *);
/* PrintOne.proto */
static int __Pyx_PrintOne(PyObject* stream, PyObject *o);
/* Globals.proto */
static PyObject* __Pyx_Globals(void);
/* CIntFromPy.proto */
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
/* CheckBinaryVersion.proto */
static int __Pyx_check_binary_version(void);
/* InitStrings.proto */
static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
/* Module declarations from 'cython' */
/* Module declarations from 'Epigrass.epimodels' */
#define __Pyx_MODULE_NAME "Epigrass.epimodels"
int __pyx_module_is_main_Epigrass__epimodels = 0;
/* Implementation of 'Epigrass.epimodels' */
static PyObject *__pyx_builtin_object;
static PyObject *__pyx_builtin_eval;
static PyObject *__pyx_builtin_ImportError;
static const char __pyx_k_[] = "";
static const char __pyx_k_E[] = "E";
static const char __pyx_k_I[] = "I";
static const char __pyx_k_N[] = "N";
static const char __pyx_k_R[] = "R";
static const char __pyx_k_S[] = "S";
static const char __pyx_k_b[] = "b";
static const char __pyx_k_c[] = "c";
static const char __pyx_k_d[] = "d";
static const char __pyx_k_e[] = "e";
static const char __pyx_k_g[] = "g";
static const char __pyx_k_i[] = "i";
static const char __pyx_k_p[] = "p";
static const char __pyx_k_r[] = "r";
static const char __pyx_k_s[] = "s";
static const char __pyx_k_w[] = "w";
static const char __pyx_k_E1[] = "E1";
static const char __pyx_k_E2[] = "E2";
static const char __pyx_k_E3[] = "E3";
static const char __pyx_k_E4[] = "E4";
static const char __pyx_k_S1[] = "S1";
static const char __pyx_k_S2[] = "S2";
static const char __pyx_k_S3[] = "S3";
static const char __pyx_k_S4[] = "S4";
static const char __pyx_k_bi[] = "bi";
static const char __pyx_k_bp[] = "bp";
static const char __pyx_k_ts[] = "{}:ts";
static const char __pyx_k_Ic1[] = "Ic1";
static const char __pyx_k_Ic2[] = "Ic2";
static const char __pyx_k_Ic3[] = "Ic3";
static const char __pyx_k_Ic4[] = "Ic4";
static const char __pyx_k_Ig1[] = "Ig1";
static const char __pyx_k_Ig2[] = "Ig2";
static const char __pyx_k_Ig3[] = "Ig3";
static const char __pyx_k_Ig4[] = "Ig4";
static const char __pyx_k_Is1[] = "Is1";
static const char __pyx_k_Is2[] = "Is2";
static const char __pyx_k_Is3[] = "Is3";
static const char __pyx_k_Is4[] = "Is4";
static const char __pyx_k_SIR[] = "SIR";
static const char __pyx_k_SIS[] = "SIS";
static const char __pyx_k_doc[] = "__doc__";
static const char __pyx_k_end[] = "end";
static const char __pyx_k_get[] = "get";
static const char __pyx_k_inf[] = "inf";
static const char __pyx_k_nan[] = "nan";
static const char __pyx_k_pc1[] = "pc1";
static const char __pyx_k_pc2[] = "pc2";
static const char __pyx_k_pc3[] = "pc3";
static const char __pyx_k_pc4[] = "pc4";
static const char __pyx_k_pp1[] = "pp1";
static const char __pyx_k_pp2[] = "pp2";
static const char __pyx_k_pp3[] = "pp3";
static const char __pyx_k_pp4[] = "pp4";
static const char __pyx_k_res[] = "res";
static const char __pyx_k_set[] = "set";
static const char __pyx_k_sys[] = "sys";
static const char __pyx_k_Epos[] = "Epos";
static const char __pyx_k_Ipos[] = "Ipos";
static const char __pyx_k_Lpos[] = "{}:Lpos";
static const char __pyx_k_Rpos[] = "Rpos";
static const char __pyx_k_SEIR[] = "SEIR";
static const char __pyx_k_SEIS[] = "SEIS";
static const char __pyx_k_SIRS[] = "SIRS";
static const char __pyx_k_SIpR[] = "SIpR";
static const char __pyx_k_Spos[] = "Spos";
static const char __pyx_k_Type[] = "Type";
static const char __pyx_k_args[] = "args";
static const char __pyx_k_beta[] = "beta";
static const char __pyx_k_bi_2[] = "{}:bi";
static const char __pyx_k_bp_2[] = "{}:bp";
static const char __pyx_k_call[] = "__call__";
static const char __pyx_k_dist[] = "dist";
static const char __pyx_k_eval[] = "eval";
static const char __pyx_k_exit[] = "exit";
static const char __pyx_k_file[] = "file";
static const char __pyx_k_init[] = "__init__";
static const char __pyx_k_main[] = "__main__";
static const char __pyx_k_prob[] = "prob";
static const char __pyx_k_self[] = "self";
static const char __pyx_k_step[] = "step";
static const char __pyx_k_test[] = "__test__";
static const char __pyx_k_totc[] = "totc";
static const char __pyx_k_E1pos[] = "E1pos";
static const char __pyx_k_E2pos[] = "E2pos";
static const char __pyx_k_E3pos[] = "E3pos";
static const char __pyx_k_E4pos[] = "E4pos";
static const char __pyx_k_L1pos[] = "L1pos";
static const char __pyx_k_L2pos[] = "L2pos";
static const char __pyx_k_L3pos[] = "L3pos";
static const char __pyx_k_L4pos[] = "L4pos";
static const char __pyx_k_Lpos2[] = "Lpos2";
static const char __pyx_k_Model[] = "Model";
static const char __pyx_k_S1pos[] = "S1pos";
static const char __pyx_k_S2pos[] = "S2pos";
static const char __pyx_k_S3pos[] = "S3pos";
static const char __pyx_k_S4pos[] = "S4pos";
static const char __pyx_k_SEIpR[] = "SEIpR";
static const char __pyx_k_SIR_s[] = "SIR_s";
static const char __pyx_k_SIS_s[] = "SIS_s";
static const char __pyx_k_alpha[] = "alpha";
static const char __pyx_k_delta[] = "delta";
static const char __pyx_k_inits[] = "{}:inits";
static const char __pyx_k_items[] = "items";
static const char __pyx_k_npass[] = "npass";
static const char __pyx_k_numpy[] = "numpy";
static const char __pyx_k_print[] = "print";
static const char __pyx_k_redis[] = "redis";
static const char __pyx_k_rpush[] = "rpush";
static const char __pyx_k_state[] = "state";
static const char __pyx_k_theta[] = "theta";
static const char __pyx_k_Custom[] = "Custom";
static const char __pyx_k_Ic1pos[] = "Ic1pos";
static const char __pyx_k_Ic2pos[] = "Ic2pos";
static const char __pyx_k_Ic3pos[] = "Ic3pos";
static const char __pyx_k_Ic4pos[] = "Ic4pos";
static const char __pyx_k_Ig1pos[] = "Ig1pos";
static const char __pyx_k_Ig2pos[] = "Ig2pos";
static const char __pyx_k_Ig3pos[] = "Ig3pos";
static const char __pyx_k_Ig4pos[] = "Ig4pos";
static const char __pyx_k_Is1pos[] = "Is1pos";
static const char __pyx_k_Is2pos[] = "Is2pos";
static const char __pyx_k_Is3pos[] = "Is3pos";
static const char __pyx_k_Is4pos[] = "Is4pos";
static const char __pyx_k_Lpos_2[] = "Lpos";
static const char __pyx_k_SEIR_s[] = "SEIR_s";
static const char __pyx_k_SEIS_s[] = "SEIS_s";
static const char __pyx_k_SIRS_s[] = "SIRS_s";
static const char __pyx_k_SIpR_s[] = "SIpR_s";
static const char __pyx_k_SIpRpS[] = "SIpRpS";
static const char __pyx_k_author[] = "__author__";
static const char __pyx_k_format[] = "format";
static const char __pyx_k_import[] = "__import__";
static const char __pyx_k_kwargs[] = "kwargs";
static const char __pyx_k_lindex[] = "lindex";
static const char __pyx_k_lrange[] = "lrange";
static const char __pyx_k_migInf[] = "{}:migInf";
static const char __pyx_k_module[] = "__module__";
static const char __pyx_k_negbin[] = "negbin";
static const char __pyx_k_object[] = "object";
static const char __pyx_k_totpop[] = "totpop";
static const char __pyx_k_vaccov[] = "vaccov";
static const char __pyx_k_values[] = "values";
static const char __pyx_k_vnames[] = "vnames";
static const char __pyx_k_Exposed[] = "Exposed";
static const char __pyx_k_SEIpR_s[] = "SEIpR_s";
static const char __pyx_k_SEIpRpS[] = "SEIpRpS";
static const char __pyx_k_epipath[] = "epipath";
static const char __pyx_k_geocode[] = "geocode";
static const char __pyx_k_hgetall[] = "hgetall";
static const char __pyx_k_inits_2[] = "inits";
static const char __pyx_k_modtype[] = "modtype";
static const char __pyx_k_npass_2[] = "{}:npass";
static const char __pyx_k_poisson[] = "poisson";
static const char __pyx_k_prepare[] = "__prepare__";
static const char __pyx_k_results[] = "results";
static const char __pyx_k_simstep[] = "simstep";
static const char __pyx_k_stepFlu[] = "stepFlu";
static const char __pyx_k_stepSIR[] = "stepSIR";
static const char __pyx_k_stepSIS[] = "stepSIS";
static const char __pyx_k_theta_2[] = "{}:theta";
static const char __pyx_k_Epimodel[] = "Epimodel";
static const char __pyx_k_Lpos_esp[] = "Lpos_esp";
static const char __pyx_k_SIpRpS_s[] = "SIpRpS_s";
static const char __pyx_k_fccoelho[] = "fccoelho";
static const char __pyx_k_infected[] = "infected";
static const char __pyx_k_migInf_2[] = "migInf";
static const char __pyx_k_parallel[] = "parallel";
static const char __pyx_k_qualname[] = "__qualname__";
static const char __pyx_k_stepSEIR[] = "stepSEIR";
static const char __pyx_k_stepSEIS[] = "stepSEIS";
static const char __pyx_k_stepSIRS[] = "stepSIRS";
static const char __pyx_k_stepSIpR[] = "stepSIpR";
static const char __pyx_k_totpop_2[] = "{}:totpop";
static const char __pyx_k_values_2[] = "{}:values";
static const char __pyx_k_Comp_age1[] = "Comp_age1";
static const char __pyx_k_Comp_age2[] = "Comp_age2";
static const char __pyx_k_Comp_age3[] = "Comp_age3";
static const char __pyx_k_Comp_age4[] = "Comp_age4";
static const char __pyx_k_Influenza[] = "Influenza";
static const char __pyx_k_Lpos2_esp[] = "Lpos2_esp";
static const char __pyx_k_SEIpRpS_s[] = "SEIpRpS_s";
static const char __pyx_k_Subc_age1[] = "Subc_age1";
static const char __pyx_k_Subc_age2[] = "Subc_age2";
static const char __pyx_k_Subc_age3[] = "Subc_age3";
static const char __pyx_k_Subc_age4[] = "Subc_age4";
static const char __pyx_k_Susc_age1[] = "Susc_age1";
static const char __pyx_k_Susc_age2[] = "Susc_age2";
static const char __pyx_k_Susc_age3[] = "Susc_age3";
static const char __pyx_k_Susc_age4[] = "Susc_age4";
static const char __pyx_k_comp_age1[] = "comp_age1";
static const char __pyx_k_comp_age2[] = "comp_age2";
static const char __pyx_k_comp_age3[] = "comp_age3";
static const char __pyx_k_comp_age4[] = "comp_age4";
static const char __pyx_k_incidence[] = "{}:incidence";
static const char __pyx_k_metaclass[] = "__metaclass__";
static const char __pyx_k_stepSEIpR[] = "stepSEIpR";
static const char __pyx_k_stepSIR_s[] = "stepSIR_s";
static const char __pyx_k_stepSIS_s[] = "stepSIS_s";
static const char __pyx_k_subc_age1[] = "subc_age1";
static const char __pyx_k_subc_age2[] = "subc_age2";
static const char __pyx_k_subc_age3[] = "subc_age3";
static const char __pyx_k_subc_age4[] = "subc_age4";
static const char __pyx_k_susc_age1[] = "susc_age1";
static const char __pyx_k_susc_age2[] = "susc_age2";
static const char __pyx_k_susc_age3[] = "susc_age3";
static const char __pyx_k_susc_age4[] = "susc_age4";
static const char __pyx_k_Incub_age1[] = "Incub_age1";
static const char __pyx_k_Incub_age2[] = "Incub_age2";
static const char __pyx_k_Incub_age3[] = "Incub_age3";
static const char __pyx_k_Incub_age4[] = "Incub_age4";
static const char __pyx_k_Infectious[] = "Infectious";
static const char __pyx_k_Sympt_age1[] = "Sympt_age1";
static const char __pyx_k_Sympt_age2[] = "Sympt_age2";
static const char __pyx_k_Sympt_age3[] = "Sympt_age3";
static const char __pyx_k_Sympt_age4[] = "Sympt_age4";
static const char __pyx_k_incub_age1[] = "incub_age1";
static const char __pyx_k_incub_age2[] = "incub_age2";
static const char __pyx_k_incub_age3[] = "incub_age3";
static const char __pyx_k_incub_age4[] = "incub_age4";
static const char __pyx_k_nan_to_num[] = "nan_to_num";
static const char __pyx_k_stepSEIR_s[] = "stepSEIR_s";
static const char __pyx_k_stepSEIS_s[] = "stepSEIS_s";
static const char __pyx_k_stepSIRS_s[] = "stepSIRS_s";
static const char __pyx_k_stepSIpR_s[] = "stepSIpR_s";
static const char __pyx_k_stepSIpRpS[] = "stepSIpRpS";
static const char __pyx_k_sympt_age1[] = "sympt_age1";
static const char __pyx_k_sympt_age2[] = "sympt_age2";
static const char __pyx_k_sympt_age3[] = "sympt_age3";
static const char __pyx_k_sympt_age4[] = "sympt_age4";
static const char __pyx_k_totalcases[] = "{}:totalcases";
static const char __pyx_k_vaccineNow[] = "vaccineNow";
static const char __pyx_k_CustomModel[] = "CustomModel";
static const char __pyx_k_ImportError[] = "ImportError";
static const char __pyx_k_Infectantes[] = "Infectantes";
static const char __pyx_k_StrictRedis[] = "StrictRedis";
static const char __pyx_k_Susceptible[] = "Susceptible";
static const char __pyx_k_redisclient[] = "redisclient";
static const char __pyx_k_selectModel[] = "selectModel";
static const char __pyx_k_stepSEIpR_s[] = "stepSEIpR_s";
static const char __pyx_k_stepSEIpRpS[] = "stepSEIpRpS";
static const char __pyx_k_numpy_random[] = "numpy.random";
static const char __pyx_k_stepSIpRpS_s[] = "stepSIpRpS_s";
static const char __pyx_k_update_redis[] = "update_redis";
static const char __pyx_k_stepSEIpRpS_s[] = "stepSEIpRpS_s";
static const char __pyx_k_Epimodel___call[] = "Epimodel.__call__";
static const char __pyx_k_Epimodel___init[] = "Epimodel.__init__";
static const char __pyx_k_negative_binomial[] = "negative_binomial";
static const char __pyx_k_Epigrass_epimodels[] = "Epigrass.epimodels";
static const char __pyx_k_get_args_from_redis[] = "get_args_from_redis";
static const char __pyx_k_Epimodel_update_redis[] = "Epimodel.update_redis";
static const char __pyx_k_Epimodel_get_args_from_redis[] = "Epimodel.get_args_from_redis";
static const char __pyx_k_Defines_a_library_of_discrete_t[] = "\n Defines a library of discrete time population models\n ";
static const char __pyx_k_home_fccoelho_Documentos_Projec[] = "/home/fccoelho/Documentos/Projects_software/Epigrass_GH/Epigrass/epimodels.py";
static const char __pyx_k_Model_type_specified_in_epg_file[] = "Model type specified in .epg file is invalid";
static const char __pyx_k_You_have_to_Create_a_CustomModel[] = "You have to Create a CustomModel.py file before you can select\nthe Custom model type";
static PyObject *__pyx_kp_b_;
static PyObject *__pyx_n_s_Comp_age1;
static PyObject *__pyx_n_s_Comp_age2;
static PyObject *__pyx_n_s_Comp_age3;
static PyObject *__pyx_n_s_Comp_age4;
static PyObject *__pyx_n_s_Custom;
static PyObject *__pyx_n_s_CustomModel;
static PyObject *__pyx_kp_s_Defines_a_library_of_discrete_t;
static PyObject *__pyx_n_s_E;
static PyObject *__pyx_n_s_E1;
static PyObject *__pyx_n_s_E1pos;
static PyObject *__pyx_n_s_E2;
static PyObject *__pyx_n_s_E2pos;
static PyObject *__pyx_n_s_E3;
static PyObject *__pyx_n_s_E3pos;
static PyObject *__pyx_n_s_E4;
static PyObject *__pyx_n_s_E4pos;
static PyObject *__pyx_n_s_Epigrass_epimodels;
static PyObject *__pyx_n_s_Epimodel;
static PyObject *__pyx_n_s_Epimodel___call;
static PyObject *__pyx_n_s_Epimodel___init;
static PyObject *__pyx_n_s_Epimodel_get_args_from_redis;
static PyObject *__pyx_n_s_Epimodel_update_redis;
static PyObject *__pyx_n_s_Epos;
static PyObject *__pyx_n_s_Exposed;
static PyObject *__pyx_n_s_I;
static PyObject *__pyx_n_s_Ic1;
static PyObject *__pyx_n_s_Ic1pos;
static PyObject *__pyx_n_s_Ic2;
static PyObject *__pyx_n_s_Ic2pos;
static PyObject *__pyx_n_s_Ic3;
static PyObject *__pyx_n_s_Ic3pos;
static PyObject *__pyx_n_s_Ic4;
static PyObject *__pyx_n_s_Ic4pos;
static PyObject *__pyx_n_s_Ig1;
static PyObject *__pyx_n_s_Ig1pos;
static PyObject *__pyx_n_s_Ig2;
static PyObject *__pyx_n_s_Ig2pos;
static PyObject *__pyx_n_s_Ig3;
static PyObject *__pyx_n_s_Ig3pos;
static PyObject *__pyx_n_s_Ig4;
static PyObject *__pyx_n_s_Ig4pos;
static PyObject *__pyx_n_s_ImportError;
static PyObject *__pyx_n_s_Incub_age1;
static PyObject *__pyx_n_s_Incub_age2;
static PyObject *__pyx_n_s_Incub_age3;
static PyObject *__pyx_n_s_Incub_age4;
static PyObject *__pyx_n_s_Infectantes;
static PyObject *__pyx_n_s_Infectious;
static PyObject *__pyx_n_s_Influenza;
static PyObject *__pyx_n_s_Ipos;
static PyObject *__pyx_n_s_Is1;
static PyObject *__pyx_n_s_Is1pos;
static PyObject *__pyx_n_s_Is2;
static PyObject *__pyx_n_s_Is2pos;
static PyObject *__pyx_n_s_Is3;
static PyObject *__pyx_n_s_Is3pos;
static PyObject *__pyx_n_s_Is4;
static PyObject *__pyx_n_s_Is4pos;
static PyObject *__pyx_n_s_L1pos;
static PyObject *__pyx_n_s_L2pos;
static PyObject *__pyx_n_s_L3pos;
static PyObject *__pyx_n_s_L4pos;
static PyObject *__pyx_kp_s_Lpos;
static PyObject *__pyx_n_s_Lpos2;
static PyObject *__pyx_n_s_Lpos2_esp;
static PyObject *__pyx_n_s_Lpos_2;
static PyObject *__pyx_n_s_Lpos_esp;
static PyObject *__pyx_n_s_Model;
static PyObject *__pyx_kp_s_Model_type_specified_in_epg_file;
static PyObject *__pyx_n_s_N;
static PyObject *__pyx_n_s_R;
static PyObject *__pyx_n_s_Rpos;
static PyObject *__pyx_n_s_S;
static PyObject *__pyx_n_s_S1;
static PyObject *__pyx_n_s_S1pos;
static PyObject *__pyx_n_s_S2;
static PyObject *__pyx_n_s_S2pos;
static PyObject *__pyx_n_s_S3;
static PyObject *__pyx_n_s_S3pos;
static PyObject *__pyx_n_s_S4;
static PyObject *__pyx_n_s_S4pos;
static PyObject *__pyx_n_s_SEIR;
static PyObject *__pyx_n_s_SEIR_s;
static PyObject *__pyx_n_s_SEIS;
static PyObject *__pyx_n_s_SEIS_s;
static PyObject *__pyx_n_s_SEIpR;
static PyObject *__pyx_n_s_SEIpR_s;
static PyObject *__pyx_n_s_SEIpRpS;
static PyObject *__pyx_n_s_SEIpRpS_s;
static PyObject *__pyx_n_s_SIR;
static PyObject *__pyx_n_s_SIRS;
static PyObject *__pyx_n_s_SIRS_s;
static PyObject *__pyx_n_s_SIR_s;
static PyObject *__pyx_n_s_SIS;
static PyObject *__pyx_n_s_SIS_s;
static PyObject *__pyx_n_s_SIpR;
static PyObject *__pyx_n_s_SIpR_s;
static PyObject *__pyx_n_s_SIpRpS;
static PyObject *__pyx_n_s_SIpRpS_s;
static PyObject *__pyx_n_s_Spos;
static PyObject *__pyx_n_s_StrictRedis;
static PyObject *__pyx_n_s_Subc_age1;
static PyObject *__pyx_n_s_Subc_age2;
static PyObject *__pyx_n_s_Subc_age3;
static PyObject *__pyx_n_s_Subc_age4;
static PyObject *__pyx_n_s_Susc_age1;
static PyObject *__pyx_n_s_Susc_age2;
static PyObject *__pyx_n_s_Susc_age3;
static PyObject *__pyx_n_s_Susc_age4;
static PyObject *__pyx_n_s_Susceptible;
static PyObject *__pyx_n_s_Sympt_age1;
static PyObject *__pyx_n_s_Sympt_age2;
static PyObject *__pyx_n_s_Sympt_age3;
static PyObject *__pyx_n_s_Sympt_age4;
static PyObject *__pyx_n_s_Type;
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static PyObject *__pyx_pf_8Epigrass_9epimodels_8Epimodel___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, long __pyx_v_geocode, PyObject *__pyx_v_modtype, int __pyx_v_parallel); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_8Epimodel_2__call__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_8Epimodel_4get_args_from_redis(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_8Epimodel_6update_redis(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_results); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_selectModel(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_Type); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_2stepFlu(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_4stepSIS(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_6stepSIS_s(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values, PyObject *__pyx_v_dist); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_8stepSIR(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_10stepSIR_s(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values, PyObject *__pyx_v_dist); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_12stepSEIS(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_14stepSEIS_s(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values, PyObject *__pyx_v_dist); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_16stepSEIR(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_18stepSEIR_s(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values, PyObject *__pyx_v_dist); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_20stepSIpRpS(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_22stepSIpRpS_s(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values, PyObject *__pyx_v_dist); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_24stepSEIpRpS(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_26stepSEIpRpS_s(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values, PyObject *__pyx_v_dist); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_28stepSIpR(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_30stepSIpR_s(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values, PyObject *__pyx_v_dist); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_32stepSEIpR(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_34stepSEIpR_s(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values, PyObject *__pyx_v_dist); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_36stepSIRS(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values); /* proto */
static PyObject *__pyx_pf_8Epigrass_9epimodels_38stepSIRS_s(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_inits, long __pyx_v_simstep, long __pyx_v_totpop, double __pyx_v_theta, double __pyx_v_npass, PyObject *__pyx_v_bi, PyObject *__pyx_v_bp, CYTHON_UNUSED PyObject *__pyx_v_values, PyObject *__pyx_v_dist); /* proto */
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/* "Epigrass/epimodels.py":53
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* simstep = int(redisclient.get("simstep")) # <<<<<<<<<<<<<<
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/* "Epigrass/epimodels.py":104
* # Graph state
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*
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/* "Epigrass/epimodels.py":169
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* r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
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* Defines the model SEIR:
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* Defines an stochastic model SEIR:
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/* "Epigrass/epimodels.py":588
* r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
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* r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
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* r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
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* r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
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/* "Epigrass/epimodels.py":745
* r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
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/* "Epigrass/epimodels.py":783
* r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
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* Defines an stochastic model SIpRs:
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/* "Epigrass/epimodels.py":830
* r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
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#endif
PyUnicode_Compare(**argname, key);
if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
if (cmp == 0) goto arg_passed_twice;
argname++;
}
}
} else
goto invalid_keyword_type;
if (kwds2) {
if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
} else {
goto invalid_keyword;
}
}
return 0;
arg_passed_twice:
__Pyx_RaiseDoubleKeywordsError(function_name, key);
goto bad;
invalid_keyword_type:
PyErr_Format(PyExc_TypeError,
"%.200s() keywords must be strings", function_name);
goto bad;
invalid_keyword:
PyErr_Format(PyExc_TypeError,
#if PY_MAJOR_VERSION < 3
"%.200s() got an unexpected keyword argument '%.200s'",
function_name, PyString_AsString(key));
#else
"%s() got an unexpected keyword argument '%U'",
function_name, key);
#endif
bad:
return -1;
}
/* ArgTypeTest */
static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) {
PyErr_Format(PyExc_TypeError,
"Argument '%.200s' has incorrect type (expected %.200s, got %.200s)",
name, type->tp_name, Py_TYPE(obj)->tp_name);
}
static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
const char *name, int exact)
{
if (unlikely(!type)) {
PyErr_SetString(PyExc_SystemError, "Missing type object");
return 0;
}
if (none_allowed && obj == Py_None) return 1;
else if (exact) {
if (likely(Py_TYPE(obj) == type)) return 1;
#if PY_MAJOR_VERSION == 2
else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1;
#endif
}
else {
if (likely(PyObject_TypeCheck(obj, type))) return 1;
}
__Pyx_RaiseArgumentTypeInvalid(name, obj, type);
return 0;
}
/* GetModuleGlobalName */
static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) {
PyObject *result;
#if CYTHON_COMPILING_IN_CPYTHON
result = PyDict_GetItem(__pyx_d, name);
if (likely(result)) {
Py_INCREF(result);
} else {
#else
result = PyObject_GetItem(__pyx_d, name);
if (!result) {
PyErr_Clear();
#endif
result = __Pyx_GetBuiltinName(name);
}
return result;
}
/* PyObjectCall */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
PyObject *result;
ternaryfunc call = func->ob_type->tp_call;
if (unlikely(!call))
return PyObject_Call(func, arg, kw);
if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
return NULL;
result = (*call)(func, arg, kw);
Py_LeaveRecursiveCall();
if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
PyErr_SetString(
PyExc_SystemError,
"NULL result without error in PyObject_Call");
}
return result;
}
#endif
/* PyObjectCallMethO */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
PyObject *self, *result;
PyCFunction cfunc;
cfunc = PyCFunction_GET_FUNCTION(func);
self = PyCFunction_GET_SELF(func);
if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
return NULL;
result = cfunc(self, arg);
Py_LeaveRecursiveCall();
if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
PyErr_SetString(
PyExc_SystemError,
"NULL result without error in PyObject_Call");
}
return result;
}
#endif
/* PyObjectCallOneArg */
#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
PyObject *result;
PyObject *args = PyTuple_New(1);
if (unlikely(!args)) return NULL;
Py_INCREF(arg);
PyTuple_SET_ITEM(args, 0, arg);
result = __Pyx_PyObject_Call(func, args, NULL);
Py_DECREF(args);
return result;
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
#ifdef __Pyx_CyFunction_USED
if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) {
#else
if (likely(PyCFunction_Check(func))) {
#endif
if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
return __Pyx_PyObject_CallMethO(func, arg);
}
}
return __Pyx__PyObject_CallOneArg(func, arg);
}
#else
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
PyObject *result;
PyObject *args = PyTuple_Pack(1, arg);
if (unlikely(!args)) return NULL;
result = __Pyx_PyObject_Call(func, args, NULL);
Py_DECREF(args);
return result;
}
#endif
/* PyObjectCallNoArg */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) {
#ifdef __Pyx_CyFunction_USED
if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) {
#else
if (likely(PyCFunction_Check(func))) {
#endif
if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) {
return __Pyx_PyObject_CallMethO(func, NULL);
}
}
return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL);
}
#endif
/* RaiseTooManyValuesToUnpack */
static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
PyErr_Format(PyExc_ValueError,
"too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
}
/* RaiseNeedMoreValuesToUnpack */
static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
PyErr_Format(PyExc_ValueError,
"need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
index, (index == 1) ? "" : "s");
}
/* IterFinish */
static CYTHON_INLINE int __Pyx_IterFinish(void) {
#if CYTHON_COMPILING_IN_CPYTHON
PyThreadState *tstate = PyThreadState_GET();
PyObject* exc_type = tstate->curexc_type;
if (unlikely(exc_type)) {
if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) {
PyObject *exc_value, *exc_tb;
exc_value = tstate->curexc_value;
exc_tb = tstate->curexc_traceback;
tstate->curexc_type = 0;
tstate->curexc_value = 0;
tstate->curexc_traceback = 0;
Py_DECREF(exc_type);
Py_XDECREF(exc_value);
Py_XDECREF(exc_tb);
return 0;
} else {
return -1;
}
}
return 0;
#else
if (unlikely(PyErr_Occurred())) {
if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
PyErr_Clear();
return 0;
} else {
return -1;
}
}
return 0;
#endif
}
/* UnpackItemEndCheck */
static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
if (unlikely(retval)) {
Py_DECREF(retval);
__Pyx_RaiseTooManyValuesError(expected);
return -1;
} else {
return __Pyx_IterFinish();
}
return 0;
}
/* BytesEquals */
static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
#if CYTHON_COMPILING_IN_PYPY
return PyObject_RichCompareBool(s1, s2, equals);
#else
if (s1 == s2) {
return (equals == Py_EQ);
} else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
const char *ps1, *ps2;
Py_ssize_t length = PyBytes_GET_SIZE(s1);
if (length != PyBytes_GET_SIZE(s2))
return (equals == Py_NE);
ps1 = PyBytes_AS_STRING(s1);
ps2 = PyBytes_AS_STRING(s2);
if (ps1[0] != ps2[0]) {
return (equals == Py_NE);
} else if (length == 1) {
return (equals == Py_EQ);
} else {
int result = memcmp(ps1, ps2, (size_t)length);
return (equals == Py_EQ) ? (result == 0) : (result != 0);
}
} else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
return (equals == Py_NE);
} else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
return (equals == Py_NE);
} else {
int result;
PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
if (!py_result)
return -1;
result = __Pyx_PyObject_IsTrue(py_result);
Py_DECREF(py_result);
return result;
}
#endif
}
/* Import */
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
PyObject *empty_list = 0;
PyObject *module = 0;
PyObject *global_dict = 0;
PyObject *empty_dict = 0;
PyObject *list;
#if PY_VERSION_HEX < 0x03030000
PyObject *py_import;
py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
if (!py_import)
goto bad;
#endif
if (from_list)
list = from_list;
else {
empty_list = PyList_New(0);
if (!empty_list)
goto bad;
list = empty_list;
}
global_dict = PyModule_GetDict(__pyx_m);
if (!global_dict)
goto bad;
empty_dict = PyDict_New();
if (!empty_dict)
goto bad;
{
#if PY_MAJOR_VERSION >= 3
if (level == -1) {
if (strchr(__Pyx_MODULE_NAME, '.')) {
#if PY_VERSION_HEX < 0x03030000
PyObject *py_level = PyInt_FromLong(1);
if (!py_level)
goto bad;
module = PyObject_CallFunctionObjArgs(py_import,
name, global_dict, empty_dict, list, py_level, NULL);
Py_DECREF(py_level);
#else
module = PyImport_ImportModuleLevelObject(
name, global_dict, empty_dict, list, 1);
#endif
if (!module) {
if (!PyErr_ExceptionMatches(PyExc_ImportError))
goto bad;
PyErr_Clear();
}
}
level = 0;
}
#endif
if (!module) {
#if PY_VERSION_HEX < 0x03030000
PyObject *py_level = PyInt_FromLong(level);
if (!py_level)
goto bad;
module = PyObject_CallFunctionObjArgs(py_import,
name, global_dict, empty_dict, list, py_level, NULL);
Py_DECREF(py_level);
#else
module = PyImport_ImportModuleLevelObject(
name, global_dict, empty_dict, list, level);
#endif
}
}
bad:
#if PY_VERSION_HEX < 0x03030000
Py_XDECREF(py_import);
#endif
Py_XDECREF(empty_list);
Py_XDECREF(empty_dict);
return module;
}
/* SaveResetException */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
*type = tstate->exc_type;
*value = tstate->exc_value;
*tb = tstate->exc_traceback;
Py_XINCREF(*type);
Py_XINCREF(*value);
Py_XINCREF(*tb);
}
static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
PyObject *tmp_type, *tmp_value, *tmp_tb;
tmp_type = tstate->exc_type;
tmp_value = tstate->exc_value;
tmp_tb = tstate->exc_traceback;
tstate->exc_type = type;
tstate->exc_value = value;
tstate->exc_traceback = tb;
Py_XDECREF(tmp_type);
Py_XDECREF(tmp_value);
Py_XDECREF(tmp_tb);
}
#endif
/* PyErrExceptionMatches */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
PyObject *exc_type = tstate->curexc_type;
if (exc_type == err) return 1;
if (unlikely(!exc_type)) return 0;
return PyErr_GivenExceptionMatches(exc_type, err);
}
#endif
/* GetException */
#if CYTHON_COMPILING_IN_CPYTHON
static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
#else
static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) {
#endif
PyObject *local_type, *local_value, *local_tb;
#if CYTHON_COMPILING_IN_CPYTHON
PyObject *tmp_type, *tmp_value, *tmp_tb;
local_type = tstate->curexc_type;
local_value = tstate->curexc_value;
local_tb = tstate->curexc_traceback;
tstate->curexc_type = 0;
tstate->curexc_value = 0;
tstate->curexc_traceback = 0;
#else
PyErr_Fetch(&local_type, &local_value, &local_tb);
#endif
PyErr_NormalizeException(&local_type, &local_value, &local_tb);
#if CYTHON_COMPILING_IN_CPYTHON
if (unlikely(tstate->curexc_type))
#else
if (unlikely(PyErr_Occurred()))
#endif
goto bad;
#if PY_MAJOR_VERSION >= 3
if (local_tb) {
if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
goto bad;
}
#endif
Py_XINCREF(local_tb);
Py_XINCREF(local_type);
Py_XINCREF(local_value);
*type = local_type;
*value = local_value;
*tb = local_tb;
#if CYTHON_COMPILING_IN_CPYTHON
tmp_type = tstate->exc_type;
tmp_value = tstate->exc_value;
tmp_tb = tstate->exc_traceback;
tstate->exc_type = local_type;
tstate->exc_value = local_value;
tstate->exc_traceback = local_tb;
Py_XDECREF(tmp_type);
Py_XDECREF(tmp_value);
Py_XDECREF(tmp_tb);
#else
PyErr_SetExcInfo(local_type, local_value, local_tb);
#endif
return 0;
bad:
*type = 0;
*value = 0;
*tb = 0;
Py_XDECREF(local_type);
Py_XDECREF(local_value);
Py_XDECREF(local_tb);
return -1;
}
/* PyIntBinop */
#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx_PyInt_SubtractCObj(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) {
#if PY_MAJOR_VERSION < 3
if (likely(PyInt_CheckExact(op2))) {
const long a = intval;
long x;
long b = PyInt_AS_LONG(op2);
x = (long)((unsigned long)a - b);
if (likely((x^a) >= 0 || (x^~b) >= 0))
return PyInt_FromLong(x);
return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
}
#endif
#if CYTHON_USE_PYLONG_INTERNALS && PY_MAJOR_VERSION >= 3
if (likely(PyLong_CheckExact(op2))) {
const long a = intval;
long b, x;
const PY_LONG_LONG lla = intval;
PY_LONG_LONG llb, llx;
const digit* digits = ((PyLongObject*)op2)->ob_digit;
const Py_ssize_t size = Py_SIZE(op2);
if (likely(__Pyx_sst_abs(size) <= 1)) {
b = likely(size) ? digits[0] : 0;
if (size == -1) b = -b;
} else {
switch (size) {
case -2:
if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
b = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
break;
} else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
llb = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
goto long_long;
}
case 2:
if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
b = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
break;
} else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
llb = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
goto long_long;
}
case -3:
if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
b = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
break;
} else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
llb = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
goto long_long;
}
case 3:
if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
b = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
break;
} else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
llb = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
goto long_long;
}
case -4:
if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
b = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
break;
} else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
llb = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
goto long_long;
}
case 4:
if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
b = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
break;
} else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
llb = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
goto long_long;
}
default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2);
}
}
x = a - b;
return PyLong_FromLong(x);
long_long:
llx = lla - llb;
return PyLong_FromLongLong(llx);
}
#endif
if (PyFloat_CheckExact(op2)) {
const long a = intval;
double b = PyFloat_AS_DOUBLE(op2);
double result;
PyFPE_START_PROTECT("subtract", return NULL)
result = ((double)a) - (double)b;
PyFPE_END_PROTECT(result)
return PyFloat_FromDouble(result);
}
return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2);
}
#endif
/* UnicodeEquals */
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
#if CYTHON_COMPILING_IN_PYPY
return PyObject_RichCompareBool(s1, s2, equals);
#else
#if PY_MAJOR_VERSION < 3
PyObject* owned_ref = NULL;
#endif
int s1_is_unicode, s2_is_unicode;
if (s1 == s2) {
goto return_eq;
}
s1_is_unicode = PyUnicode_CheckExact(s1);
s2_is_unicode = PyUnicode_CheckExact(s2);
#if PY_MAJOR_VERSION < 3
if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) {
owned_ref = PyUnicode_FromObject(s2);
if (unlikely(!owned_ref))
return -1;
s2 = owned_ref;
s2_is_unicode = 1;
} else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) {
owned_ref = PyUnicode_FromObject(s1);
if (unlikely(!owned_ref))
return -1;
s1 = owned_ref;
s1_is_unicode = 1;
} else if (((!s2_is_unicode) & (!s1_is_unicode))) {
return __Pyx_PyBytes_Equals(s1, s2, equals);
}
#endif
if (s1_is_unicode & s2_is_unicode) {
Py_ssize_t length;
int kind;
void *data1, *data2;
if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0))
return -1;
length = __Pyx_PyUnicode_GET_LENGTH(s1);
if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) {
goto return_ne;
}
kind = __Pyx_PyUnicode_KIND(s1);
if (kind != __Pyx_PyUnicode_KIND(s2)) {
goto return_ne;
}
data1 = __Pyx_PyUnicode_DATA(s1);
data2 = __Pyx_PyUnicode_DATA(s2);
if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) {
goto return_ne;
} else if (length == 1) {
goto return_eq;
} else {
int result = memcmp(data1, data2, (size_t)(length * kind));
#if PY_MAJOR_VERSION < 3
Py_XDECREF(owned_ref);
#endif
return (equals == Py_EQ) ? (result == 0) : (result != 0);
}
} else if ((s1 == Py_None) & s2_is_unicode) {
goto return_ne;
} else if ((s2 == Py_None) & s1_is_unicode) {
goto return_ne;
} else {
int result;
PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
if (!py_result)
return -1;
result = __Pyx_PyObject_IsTrue(py_result);
Py_DECREF(py_result);
return result;
}
return_eq:
#if PY_MAJOR_VERSION < 3
Py_XDECREF(owned_ref);
#endif
return (equals == Py_EQ);
return_ne:
#if PY_MAJOR_VERSION < 3
Py_XDECREF(owned_ref);
#endif
return (equals == Py_NE);
#endif
}
/* None */
static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) {
PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname);
}
/* ImportFrom */
static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
PyErr_Format(PyExc_ImportError,
#if PY_MAJOR_VERSION < 3
"cannot import name %.230s", PyString_AS_STRING(name));
#else
"cannot import name %S", name);
#endif
}
return value;
}
/* CalculateMetaclass */
static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases) {
Py_ssize_t i, nbases = PyTuple_GET_SIZE(bases);
for (i=0; i < nbases; i++) {
PyTypeObject *tmptype;
PyObject *tmp = PyTuple_GET_ITEM(bases, i);
tmptype = Py_TYPE(tmp);
#if PY_MAJOR_VERSION < 3
if (tmptype == &PyClass_Type)
continue;
#endif
if (!metaclass) {
metaclass = tmptype;
continue;
}
if (PyType_IsSubtype(metaclass, tmptype))
continue;
if (PyType_IsSubtype(tmptype, metaclass)) {
metaclass = tmptype;
continue;
}
PyErr_SetString(PyExc_TypeError,
"metaclass conflict: "
"the metaclass of a derived class "
"must be a (non-strict) subclass "
"of the metaclasses of all its bases");
return NULL;
}
if (!metaclass) {
#if PY_MAJOR_VERSION < 3
metaclass = &PyClass_Type;
#else
metaclass = &PyType_Type;
#endif
}
Py_INCREF((PyObject*) metaclass);
return (PyObject*) metaclass;
}
/* FetchCommonType */
static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) {
PyObject* fake_module;
PyTypeObject* cached_type = NULL;
fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI);
if (!fake_module) return NULL;
Py_INCREF(fake_module);
cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name);
if (cached_type) {
if (!PyType_Check((PyObject*)cached_type)) {
PyErr_Format(PyExc_TypeError,
"Shared Cython type %.200s is not a type object",
type->tp_name);
goto bad;
}
if (cached_type->tp_basicsize != type->tp_basicsize) {
PyErr_Format(PyExc_TypeError,
"Shared Cython type %.200s has the wrong size, try recompiling",
type->tp_name);
goto bad;
}
} else {
if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad;
PyErr_Clear();
if (PyType_Ready(type) < 0) goto bad;
if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0)
goto bad;
Py_INCREF(type);
cached_type = type;
}
done:
Py_DECREF(fake_module);
return cached_type;
bad:
Py_XDECREF(cached_type);
cached_type = NULL;
goto done;
}
/* CythonFunction */
static PyObject *
__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure)
{
if (unlikely(op->func_doc == NULL)) {
if (op->func.m_ml->ml_doc) {
#if PY_MAJOR_VERSION >= 3
op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc);
#else
op->func_doc = PyString_FromString(op->func.m_ml->ml_doc);
#endif
if (unlikely(op->func_doc == NULL))
return NULL;
} else {
Py_INCREF(Py_None);
return Py_None;
}
}
Py_INCREF(op->func_doc);
return op->func_doc;
}
static int
__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value)
{
PyObject *tmp = op->func_doc;
if (value == NULL) {
value = Py_None;
}
Py_INCREF(value);
op->func_doc = value;
Py_XDECREF(tmp);
return 0;
}
static PyObject *
__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op)
{
if (unlikely(op->func_name == NULL)) {
#if PY_MAJOR_VERSION >= 3
op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name);
#else
op->func_name = PyString_InternFromString(op->func.m_ml->ml_name);
#endif
if (unlikely(op->func_name == NULL))
return NULL;
}
Py_INCREF(op->func_name);
return op->func_name;
}
static int
__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value)
{
PyObject *tmp;
#if PY_MAJOR_VERSION >= 3
if (unlikely(value == NULL || !PyUnicode_Check(value))) {
#else
if (unlikely(value == NULL || !PyString_Check(value))) {
#endif
PyErr_SetString(PyExc_TypeError,
"__name__ must be set to a string object");
return -1;
}
tmp = op->func_name;
Py_INCREF(value);
op->func_name = value;
Py_XDECREF(tmp);
return 0;
}
static PyObject *
__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op)
{
Py_INCREF(op->func_qualname);
return op->func_qualname;
}
static int
__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value)
{
PyObject *tmp;
#if PY_MAJOR_VERSION >= 3
if (unlikely(value == NULL || !PyUnicode_Check(value))) {
#else
if (unlikely(value == NULL || !PyString_Check(value))) {
#endif
PyErr_SetString(PyExc_TypeError,
"__qualname__ must be set to a string object");
return -1;
}
tmp = op->func_qualname;
Py_INCREF(value);
op->func_qualname = value;
Py_XDECREF(tmp);
return 0;
}
static PyObject *
__Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure)
{
PyObject *self;
self = m->func_closure;
if (self == NULL)
self = Py_None;
Py_INCREF(self);
return self;
}
static PyObject *
__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op)
{
if (unlikely(op->func_dict == NULL)) {
op->func_dict = PyDict_New();
if (unlikely(op->func_dict == NULL))
return NULL;
}
Py_INCREF(op->func_dict);
return op->func_dict;
}
static int
__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value)
{
PyObject *tmp;
if (unlikely(value == NULL)) {
PyErr_SetString(PyExc_TypeError,
"function's dictionary may not be deleted");
return -1;
}
if (unlikely(!PyDict_Check(value))) {
PyErr_SetString(PyExc_TypeError,
"setting function's dictionary to a non-dict");
return -1;
}
tmp = op->func_dict;
Py_INCREF(value);
op->func_dict = value;
Py_XDECREF(tmp);
return 0;
}
static PyObject *
__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op)
{
Py_INCREF(op->func_globals);
return op->func_globals;
}
static PyObject *
__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op)
{
Py_INCREF(Py_None);
return Py_None;
}
static PyObject *
__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op)
{
PyObject* result = (op->func_code) ? op->func_code : Py_None;
Py_INCREF(result);
return result;
}
static int
__Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) {
int result = 0;
PyObject *res = op->defaults_getter((PyObject *) op);
if (unlikely(!res))
return -1;
#if CYTHON_COMPILING_IN_CPYTHON
op->defaults_tuple = PyTuple_GET_ITEM(res, 0);
Py_INCREF(op->defaults_tuple);
op->defaults_kwdict = PyTuple_GET_ITEM(res, 1);
Py_INCREF(op->defaults_kwdict);
#else
op->defaults_tuple = PySequence_ITEM(res, 0);
if (unlikely(!op->defaults_tuple)) result = -1;
else {
op->defaults_kwdict = PySequence_ITEM(res, 1);
if (unlikely(!op->defaults_kwdict)) result = -1;
}
#endif
Py_DECREF(res);
return result;
}
static int
__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value) {
PyObject* tmp;
if (!value) {
value = Py_None;
} else if (value != Py_None && !PyTuple_Check(value)) {
PyErr_SetString(PyExc_TypeError,
"__defaults__ must be set to a tuple object");
return -1;
}
Py_INCREF(value);
tmp = op->defaults_tuple;
op->defaults_tuple = value;
Py_XDECREF(tmp);
return 0;
}
static PyObject *
__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op) {
PyObject* result = op->defaults_tuple;
if (unlikely(!result)) {
if (op->defaults_getter) {
if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
result = op->defaults_tuple;
} else {
result = Py_None;
}
}
Py_INCREF(result);
return result;
}
static int
__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value) {
PyObject* tmp;
if (!value) {
value = Py_None;
} else if (value != Py_None && !PyDict_Check(value)) {
PyErr_SetString(PyExc_TypeError,
"__kwdefaults__ must be set to a dict object");
return -1;
}
Py_INCREF(value);
tmp = op->defaults_kwdict;
op->defaults_kwdict = value;
Py_XDECREF(tmp);
return 0;
}
static PyObject *
__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op) {
PyObject* result = op->defaults_kwdict;
if (unlikely(!result)) {
if (op->defaults_getter) {
if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
result = op->defaults_kwdict;
} else {
result = Py_None;
}
}
Py_INCREF(result);
return result;
}
static int
__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value) {
PyObject* tmp;
if (!value || value == Py_None) {
value = NULL;
} else if (!PyDict_Check(value)) {
PyErr_SetString(PyExc_TypeError,
"__annotations__ must be set to a dict object");
return -1;
}
Py_XINCREF(value);
tmp = op->func_annotations;
op->func_annotations = value;
Py_XDECREF(tmp);
return 0;
}
static PyObject *
__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op) {
PyObject* result = op->func_annotations;
if (unlikely(!result)) {
result = PyDict_New();
if (unlikely(!result)) return NULL;
op->func_annotations = result;
}
Py_INCREF(result);
return result;
}
static PyGetSetDef __pyx_CyFunction_getsets[] = {
{(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
{(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
{(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
{(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
{(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0},
{(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0},
{(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
{(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
{(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
{(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
{(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
{(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
{(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
{(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
{(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
{(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
{(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0},
{(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0},
{0, 0, 0, 0, 0}
};
static PyMemberDef __pyx_CyFunction_members[] = {
{(char *) "__module__", T_OBJECT, offsetof(__pyx_CyFunctionObject, func.m_module), PY_WRITE_RESTRICTED, 0},
{0, 0, 0, 0, 0}
};
static PyObject *
__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args)
{
#if PY_MAJOR_VERSION >= 3
return PyUnicode_FromString(m->func.m_ml->ml_name);
#else
return PyString_FromString(m->func.m_ml->ml_name);
#endif
}
static PyMethodDef __pyx_CyFunction_methods[] = {
{"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0},
{0, 0, 0, 0}
};
#if PY_VERSION_HEX < 0x030500A0
#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist)
#else
#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist)
#endif
static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags, PyObject* qualname,
PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
__pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type);
if (op == NULL)
return NULL;
op->flags = flags;
__Pyx_CyFunction_weakreflist(op) = NULL;
op->func.m_ml = ml;
op->func.m_self = (PyObject *) op;
Py_XINCREF(closure);
op->func_closure = closure;
Py_XINCREF(module);
op->func.m_module = module;
op->func_dict = NULL;
op->func_name = NULL;
Py_INCREF(qualname);
op->func_qualname = qualname;
op->func_doc = NULL;
op->func_classobj = NULL;
op->func_globals = globals;
Py_INCREF(op->func_globals);
Py_XINCREF(code);
op->func_code = code;
op->defaults_pyobjects = 0;
op->defaults = NULL;
op->defaults_tuple = NULL;
op->defaults_kwdict = NULL;
op->defaults_getter = NULL;
op->func_annotations = NULL;
PyObject_GC_Track(op);
return (PyObject *) op;
}
static int
__Pyx_CyFunction_clear(__pyx_CyFunctionObject *m)
{
Py_CLEAR(m->func_closure);
Py_CLEAR(m->func.m_module);
Py_CLEAR(m->func_dict);
Py_CLEAR(m->func_name);
Py_CLEAR(m->func_qualname);
Py_CLEAR(m->func_doc);
Py_CLEAR(m->func_globals);
Py_CLEAR(m->func_code);
Py_CLEAR(m->func_classobj);
Py_CLEAR(m->defaults_tuple);
Py_CLEAR(m->defaults_kwdict);
Py_CLEAR(m->func_annotations);
if (m->defaults) {
PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
int i;
for (i = 0; i < m->defaults_pyobjects; i++)
Py_XDECREF(pydefaults[i]);
PyObject_Free(m->defaults);
m->defaults = NULL;
}
return 0;
}
static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m)
{
PyObject_GC_UnTrack(m);
if (__Pyx_CyFunction_weakreflist(m) != NULL)
PyObject_ClearWeakRefs((PyObject *) m);
__Pyx_CyFunction_clear(m);
PyObject_GC_Del(m);
}
static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg)
{
Py_VISIT(m->func_closure);
Py_VISIT(m->func.m_module);
Py_VISIT(m->func_dict);
Py_VISIT(m->func_name);
Py_VISIT(m->func_qualname);
Py_VISIT(m->func_doc);
Py_VISIT(m->func_globals);
Py_VISIT(m->func_code);
Py_VISIT(m->func_classobj);
Py_VISIT(m->defaults_tuple);
Py_VISIT(m->defaults_kwdict);
if (m->defaults) {
PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
int i;
for (i = 0; i < m->defaults_pyobjects; i++)
Py_VISIT(pydefaults[i]);
}
return 0;
}
static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type)
{
__pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) {
Py_INCREF(func);
return func;
}
if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) {
if (type == NULL)
type = (PyObject *)(Py_TYPE(obj));
return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type)));
}
if (obj == Py_None)
obj = NULL;
return __Pyx_PyMethod_New(func, obj, type);
}
static PyObject*
__Pyx_CyFunction_repr(__pyx_CyFunctionObject *op)
{
#if PY_MAJOR_VERSION >= 3
return PyUnicode_FromFormat("",
op->func_qualname, (void *)op);
#else
return PyString_FromFormat("",
PyString_AsString(op->func_qualname), (void *)op);
#endif
}
#if CYTHON_COMPILING_IN_PYPY
static PyObject * __Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
PyCFunctionObject* f = (PyCFunctionObject*)func;
PyCFunction meth = f->m_ml->ml_meth;
PyObject *self = f->m_self;
Py_ssize_t size;
switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) {
case METH_VARARGS:
if (likely(kw == NULL || PyDict_Size(kw) == 0))
return (*meth)(self, arg);
break;
case METH_VARARGS | METH_KEYWORDS:
return (*(PyCFunctionWithKeywords)meth)(self, arg, kw);
case METH_NOARGS:
if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
size = PyTuple_GET_SIZE(arg);
if (likely(size == 0))
return (*meth)(self, NULL);
PyErr_Format(PyExc_TypeError,
"%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)",
f->m_ml->ml_name, size);
return NULL;
}
break;
case METH_O:
if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
size = PyTuple_GET_SIZE(arg);
if (likely(size == 1)) {
PyObject *result, *arg0 = PySequence_ITEM(arg, 0);
if (unlikely(!arg0)) return NULL;
result = (*meth)(self, arg0);
Py_DECREF(arg0);
return result;
}
PyErr_Format(PyExc_TypeError,
"%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)",
f->m_ml->ml_name, size);
return NULL;
}
break;
default:
PyErr_SetString(PyExc_SystemError, "Bad call flags in "
"__Pyx_CyFunction_Call. METH_OLDARGS is no "
"longer supported!");
return NULL;
}
PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments",
f->m_ml->ml_name);
return NULL;
}
#else
static PyObject * __Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
return PyCFunction_Call(func, arg, kw);
}
#endif
static PyTypeObject __pyx_CyFunctionType_type = {
PyVarObject_HEAD_INIT(0, 0)
"cython_function_or_method",
sizeof(__pyx_CyFunctionObject),
0,
(destructor) __Pyx_CyFunction_dealloc,
0,
0,
0,
#if PY_MAJOR_VERSION < 3
0,
#else
0,
#endif
(reprfunc) __Pyx_CyFunction_repr,
0,
0,
0,
0,
__Pyx_CyFunction_Call,
0,
0,
0,
0,
Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC,
0,
(traverseproc) __Pyx_CyFunction_traverse,
(inquiry) __Pyx_CyFunction_clear,
0,
#if PY_VERSION_HEX < 0x030500A0
offsetof(__pyx_CyFunctionObject, func_weakreflist),
#else
offsetof(PyCFunctionObject, m_weakreflist),
#endif
0,
0,
__pyx_CyFunction_methods,
__pyx_CyFunction_members,
__pyx_CyFunction_getsets,
0,
0,
__Pyx_CyFunction_descr_get,
0,
offsetof(__pyx_CyFunctionObject, func_dict),
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
#if PY_VERSION_HEX >= 0x030400a1
0,
#endif
};
static int __pyx_CyFunction_init(void) {
#if !CYTHON_COMPILING_IN_PYPY
__pyx_CyFunctionType_type.tp_call = PyCFunction_Call;
#endif
__pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type);
if (__pyx_CyFunctionType == NULL) {
return -1;
}
return 0;
}
static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) {
__pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
m->defaults = PyObject_Malloc(size);
if (!m->defaults)
return PyErr_NoMemory();
memset(m->defaults, 0, size);
m->defaults_pyobjects = pyobjects;
return m->defaults;
}
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
__pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
m->defaults_tuple = tuple;
Py_INCREF(tuple);
}
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) {
__pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
m->defaults_kwdict = dict;
Py_INCREF(dict);
}
static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) {
__pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
m->func_annotations = dict;
Py_INCREF(dict);
}
/* Py3ClassCreate */
static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name,
PyObject *qualname, PyObject *mkw, PyObject *modname, PyObject *doc) {
PyObject *ns;
if (metaclass) {
PyObject *prep = __Pyx_PyObject_GetAttrStr(metaclass, __pyx_n_s_prepare);
if (prep) {
PyObject *pargs = PyTuple_Pack(2, name, bases);
if (unlikely(!pargs)) {
Py_DECREF(prep);
return NULL;
}
ns = PyObject_Call(prep, pargs, mkw);
Py_DECREF(prep);
Py_DECREF(pargs);
} else {
if (unlikely(!PyErr_ExceptionMatches(PyExc_AttributeError)))
return NULL;
PyErr_Clear();
ns = PyDict_New();
}
} else {
ns = PyDict_New();
}
if (unlikely(!ns))
return NULL;
if (unlikely(PyObject_SetItem(ns, __pyx_n_s_module, modname) < 0)) goto bad;
if (unlikely(PyObject_SetItem(ns, __pyx_n_s_qualname, qualname) < 0)) goto bad;
if (unlikely(doc && PyObject_SetItem(ns, __pyx_n_s_doc, doc) < 0)) goto bad;
return ns;
bad:
Py_DECREF(ns);
return NULL;
}
static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases,
PyObject *dict, PyObject *mkw,
int calculate_metaclass, int allow_py2_metaclass) {
PyObject *result, *margs;
PyObject *owned_metaclass = NULL;
if (allow_py2_metaclass) {
owned_metaclass = PyObject_GetItem(dict, __pyx_n_s_metaclass);
if (owned_metaclass) {
metaclass = owned_metaclass;
} else if (likely(PyErr_ExceptionMatches(PyExc_KeyError))) {
PyErr_Clear();
} else {
return NULL;
}
}
if (calculate_metaclass && (!metaclass || PyType_Check(metaclass))) {
metaclass = __Pyx_CalculateMetaclass((PyTypeObject*) metaclass, bases);
Py_XDECREF(owned_metaclass);
if (unlikely(!metaclass))
return NULL;
owned_metaclass = metaclass;
}
margs = PyTuple_Pack(3, name, bases, dict);
if (unlikely(!margs)) {
result = NULL;
} else {
result = PyObject_Call(metaclass, margs, mkw);
Py_DECREF(margs);
}
Py_XDECREF(owned_metaclass);
return result;
}
/* CodeObjectCache */
static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
int start = 0, mid = 0, end = count - 1;
if (end >= 0 && code_line > entries[end].code_line) {
return count;
}
while (start < end) {
mid = start + (end - start) / 2;
if (code_line < entries[mid].code_line) {
end = mid;
} else if (code_line > entries[mid].code_line) {
start = mid + 1;
} else {
return mid;
}
}
if (code_line <= entries[mid].code_line) {
return mid;
} else {
return mid + 1;
}
}
static PyCodeObject *__pyx_find_code_object(int code_line) {
PyCodeObject* code_object;
int pos;
if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
return NULL;
}
pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
return NULL;
}
code_object = __pyx_code_cache.entries[pos].code_object;
Py_INCREF(code_object);
return code_object;
}
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
int pos, i;
__Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
if (unlikely(!code_line)) {
return;
}
if (unlikely(!entries)) {
entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
if (likely(entries)) {
__pyx_code_cache.entries = entries;
__pyx_code_cache.max_count = 64;
__pyx_code_cache.count = 1;
entries[0].code_line = code_line;
entries[0].code_object = code_object;
Py_INCREF(code_object);
}
return;
}
pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
PyCodeObject* tmp = entries[pos].code_object;
entries[pos].code_object = code_object;
Py_DECREF(tmp);
return;
}
if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
int new_max = __pyx_code_cache.max_count + 64;
entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
__pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry));
if (unlikely(!entries)) {
return;
}
__pyx_code_cache.entries = entries;
__pyx_code_cache.max_count = new_max;
}
for (i=__pyx_code_cache.count; i>pos; i--) {
entries[i] = entries[i-1];
}
entries[pos].code_line = code_line;
entries[pos].code_object = code_object;
__pyx_code_cache.count++;
Py_INCREF(code_object);
}
/* AddTraceback */
#include "compile.h"
#include "frameobject.h"
#include "traceback.h"
static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
const char *funcname, int c_line,
int py_line, const char *filename) {
PyCodeObject *py_code = 0;
PyObject *py_srcfile = 0;
PyObject *py_funcname = 0;
#if PY_MAJOR_VERSION < 3
py_srcfile = PyString_FromString(filename);
#else
py_srcfile = PyUnicode_FromString(filename);
#endif
if (!py_srcfile) goto bad;
if (c_line) {
#if PY_MAJOR_VERSION < 3
py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
#else
py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
#endif
}
else {
#if PY_MAJOR_VERSION < 3
py_funcname = PyString_FromString(funcname);
#else
py_funcname = PyUnicode_FromString(funcname);
#endif
}
if (!py_funcname) goto bad;
py_code = __Pyx_PyCode_New(
0,
0,
0,
0,
0,
__pyx_empty_bytes, /*PyObject *code,*/
__pyx_empty_tuple, /*PyObject *consts,*/
__pyx_empty_tuple, /*PyObject *names,*/
__pyx_empty_tuple, /*PyObject *varnames,*/
__pyx_empty_tuple, /*PyObject *freevars,*/
__pyx_empty_tuple, /*PyObject *cellvars,*/
py_srcfile, /*PyObject *filename,*/
py_funcname, /*PyObject *name,*/
py_line,
__pyx_empty_bytes /*PyObject *lnotab*/
);
Py_DECREF(py_srcfile);
Py_DECREF(py_funcname);
return py_code;
bad:
Py_XDECREF(py_srcfile);
Py_XDECREF(py_funcname);
return NULL;
}
static void __Pyx_AddTraceback(const char *funcname, int c_line,
int py_line, const char *filename) {
PyCodeObject *py_code = 0;
PyFrameObject *py_frame = 0;
py_code = __pyx_find_code_object(c_line ? c_line : py_line);
if (!py_code) {
py_code = __Pyx_CreateCodeObjectForTraceback(
funcname, c_line, py_line, filename);
if (!py_code) goto bad;
__pyx_insert_code_object(c_line ? c_line : py_line, py_code);
}
py_frame = PyFrame_New(
PyThreadState_GET(), /*PyThreadState *tstate,*/
py_code, /*PyCodeObject *code,*/
__pyx_d, /*PyObject *globals,*/
0 /*PyObject *locals*/
);
if (!py_frame) goto bad;
py_frame->f_lineno = py_line;
PyTraceBack_Here(py_frame);
bad:
Py_XDECREF(py_code);
Py_XDECREF(py_frame);
}
/* CIntFromPyVerify */
#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
__PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
__PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
{\
func_type value = func_value;\
if (sizeof(target_type) < sizeof(func_type)) {\
if (unlikely(value != (func_type) (target_type) value)) {\
func_type zero = 0;\
if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
return (target_type) -1;\
if (is_unsigned && unlikely(value < zero))\
goto raise_neg_overflow;\
else\
goto raise_overflow;\
}\
}\
return (target_type) value;\
}
/* CIntToPy */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
const long neg_one = (long) -1, const_zero = (long) 0;
const int is_unsigned = neg_one > const_zero;
if (is_unsigned) {
if (sizeof(long) < sizeof(long)) {
return PyInt_FromLong((long) value);
} else if (sizeof(long) <= sizeof(unsigned long)) {
return PyLong_FromUnsignedLong((unsigned long) value);
} else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
}
} else {
if (sizeof(long) <= sizeof(long)) {
return PyInt_FromLong((long) value);
} else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
return PyLong_FromLongLong((PY_LONG_LONG) value);
}
}
{
int one = 1; int little = (int)*(unsigned char *)&one;
unsigned char *bytes = (unsigned char *)&value;
return _PyLong_FromByteArray(bytes, sizeof(long),
little, !is_unsigned);
}
}
/* Print */
#if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION < 3
static PyObject *__Pyx_GetStdout(void) {
PyObject *f = PySys_GetObject((char *)"stdout");
if (!f) {
PyErr_SetString(PyExc_RuntimeError, "lost sys.stdout");
}
return f;
}
static int __Pyx_Print(PyObject* f, PyObject *arg_tuple, int newline) {
int i;
if (!f) {
if (!(f = __Pyx_GetStdout()))
return -1;
}
Py_INCREF(f);
for (i=0; i < PyTuple_GET_SIZE(arg_tuple); i++) {
PyObject* v;
if (PyFile_SoftSpace(f, 1)) {
if (PyFile_WriteString(" ", f) < 0)
goto error;
}
v = PyTuple_GET_ITEM(arg_tuple, i);
if (PyFile_WriteObject(v, f, Py_PRINT_RAW) < 0)
goto error;
if (PyString_Check(v)) {
char *s = PyString_AsString(v);
Py_ssize_t len = PyString_Size(v);
if (len > 0) {
switch (s[len-1]) {
case ' ': break;
case '\f': case '\r': case '\n': case '\t': case '\v':
PyFile_SoftSpace(f, 0);
break;
default: break;
}
}
}
}
if (newline) {
if (PyFile_WriteString("\n", f) < 0)
goto error;
PyFile_SoftSpace(f, 0);
}
Py_DECREF(f);
return 0;
error:
Py_DECREF(f);
return -1;
}
#else
static int __Pyx_Print(PyObject* stream, PyObject *arg_tuple, int newline) {
PyObject* kwargs = 0;
PyObject* result = 0;
PyObject* end_string;
if (unlikely(!__pyx_print)) {
__pyx_print = PyObject_GetAttr(__pyx_b, __pyx_n_s_print);
if (!__pyx_print)
return -1;
}
if (stream) {
kwargs = PyDict_New();
if (unlikely(!kwargs))
return -1;
if (unlikely(PyDict_SetItem(kwargs, __pyx_n_s_file, stream) < 0))
goto bad;
if (!newline) {
end_string = PyUnicode_FromStringAndSize(" ", 1);
if (unlikely(!end_string))
goto bad;
if (PyDict_SetItem(kwargs, __pyx_n_s_end, end_string) < 0) {
Py_DECREF(end_string);
goto bad;
}
Py_DECREF(end_string);
}
} else if (!newline) {
if (unlikely(!__pyx_print_kwargs)) {
__pyx_print_kwargs = PyDict_New();
if (unlikely(!__pyx_print_kwargs))
return -1;
end_string = PyUnicode_FromStringAndSize(" ", 1);
if (unlikely(!end_string))
return -1;
if (PyDict_SetItem(__pyx_print_kwargs, __pyx_n_s_end, end_string) < 0) {
Py_DECREF(end_string);
return -1;
}
Py_DECREF(end_string);
}
kwargs = __pyx_print_kwargs;
}
result = PyObject_Call(__pyx_print, arg_tuple, kwargs);
if (unlikely(kwargs) && (kwargs != __pyx_print_kwargs))
Py_DECREF(kwargs);
if (!result)
return -1;
Py_DECREF(result);
return 0;
bad:
if (kwargs != __pyx_print_kwargs)
Py_XDECREF(kwargs);
return -1;
}
#endif
/* CIntFromPy */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
const long neg_one = (long) -1, const_zero = (long) 0;
const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
if (likely(PyInt_Check(x))) {
if (sizeof(long) < sizeof(long)) {
__PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
} else {
long val = PyInt_AS_LONG(x);
if (is_unsigned && unlikely(val < 0)) {
goto raise_neg_overflow;
}
return (long) val;
}
} else
#endif
if (likely(PyLong_Check(x))) {
if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
const digit* digits = ((PyLongObject*)x)->ob_digit;
switch (Py_SIZE(x)) {
case 0: return (long) 0;
case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
case 2:
if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
}
}
break;
case 3:
if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
}
}
break;
case 4:
if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
}
}
break;
}
#endif
#if CYTHON_COMPILING_IN_CPYTHON
if (unlikely(Py_SIZE(x) < 0)) {
goto raise_neg_overflow;
}
#else
{
int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
if (unlikely(result < 0))
return (long) -1;
if (unlikely(result == 1))
goto raise_neg_overflow;
}
#endif
if (sizeof(long) <= sizeof(unsigned long)) {
__PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
} else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
__PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
}
} else {
#if CYTHON_USE_PYLONG_INTERNALS
const digit* digits = ((PyLongObject*)x)->ob_digit;
switch (Py_SIZE(x)) {
case 0: return (long) 0;
case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0])
case -2:
if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
}
}
break;
case 2:
if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
}
}
break;
case -3:
if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
}
}
break;
case 3:
if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
}
}
break;
case -4:
if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
}
}
break;
case 4:
if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
}
}
break;
}
#endif
if (sizeof(long) <= sizeof(long)) {
__PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
} else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
__PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
}
}
{
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
PyErr_SetString(PyExc_RuntimeError,
"_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
long val;
PyObject *v = __Pyx_PyNumber_IntOrLong(x);
#if PY_MAJOR_VERSION < 3
if (likely(v) && !PyLong_Check(v)) {
PyObject *tmp = v;
v = PyNumber_Long(tmp);
Py_DECREF(tmp);
}
#endif
if (likely(v)) {
int one = 1; int is_little = (int)*(unsigned char *)&one;
unsigned char *bytes = (unsigned char *)&val;
int ret = _PyLong_AsByteArray((PyLongObject *)v,
bytes, sizeof(val),
is_little, !is_unsigned);
Py_DECREF(v);
if (likely(!ret))
return val;
}
#endif
return (long) -1;
}
} else {
long val;
PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
if (!tmp) return (long) -1;
val = __Pyx_PyInt_As_long(tmp);
Py_DECREF(tmp);
return val;
}
raise_overflow:
PyErr_SetString(PyExc_OverflowError,
"value too large to convert to long");
return (long) -1;
raise_neg_overflow:
PyErr_SetString(PyExc_OverflowError,
"can't convert negative value to long");
return (long) -1;
}
/* GetAttr */
static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) {
#if CYTHON_COMPILING_IN_CPYTHON
#if PY_MAJOR_VERSION >= 3
if (likely(PyUnicode_Check(n)))
#else
if (likely(PyString_Check(n)))
#endif
return __Pyx_PyObject_GetAttrStr(o, n);
#endif
return PyObject_GetAttr(o, n);
}
/* PrintOne */
#if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION < 3
static int __Pyx_PrintOne(PyObject* f, PyObject *o) {
if (!f) {
if (!(f = __Pyx_GetStdout()))
return -1;
}
Py_INCREF(f);
if (PyFile_SoftSpace(f, 0)) {
if (PyFile_WriteString(" ", f) < 0)
goto error;
}
if (PyFile_WriteObject(o, f, Py_PRINT_RAW) < 0)
goto error;
if (PyFile_WriteString("\n", f) < 0)
goto error;
Py_DECREF(f);
return 0;
error:
Py_DECREF(f);
return -1;
/* the line below is just to avoid C compiler
* warnings about unused functions */
return __Pyx_Print(f, NULL, 0);
}
#else
static int __Pyx_PrintOne(PyObject* stream, PyObject *o) {
int res;
PyObject* arg_tuple = PyTuple_Pack(1, o);
if (unlikely(!arg_tuple))
return -1;
res = __Pyx_Print(stream, arg_tuple, 1);
Py_DECREF(arg_tuple);
return res;
}
#endif
/* Globals */
static PyObject* __Pyx_Globals(void) {
Py_ssize_t i;
PyObject *names;
PyObject *globals = __pyx_d;
Py_INCREF(globals);
names = PyObject_Dir(__pyx_m);
if (!names)
goto bad;
for (i = PyList_GET_SIZE(names)-1; i >= 0; i--) {
#if CYTHON_COMPILING_IN_PYPY
PyObject* name = PySequence_ITEM(names, i);
if (!name)
goto bad;
#else
PyObject* name = PyList_GET_ITEM(names, i);
#endif
if (!PyDict_Contains(globals, name)) {
PyObject* value = __Pyx_GetAttr(__pyx_m, name);
if (!value) {
#if CYTHON_COMPILING_IN_PYPY
Py_DECREF(name);
#endif
goto bad;
}
if (PyDict_SetItem(globals, name, value) < 0) {
#if CYTHON_COMPILING_IN_PYPY
Py_DECREF(name);
#endif
Py_DECREF(value);
goto bad;
}
}
#if CYTHON_COMPILING_IN_PYPY
Py_DECREF(name);
#endif
}
Py_DECREF(names);
return globals;
bad:
Py_XDECREF(names);
Py_XDECREF(globals);
return NULL;
}
/* CIntFromPy */
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
const int neg_one = (int) -1, const_zero = (int) 0;
const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
if (likely(PyInt_Check(x))) {
if (sizeof(int) < sizeof(long)) {
__PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
} else {
long val = PyInt_AS_LONG(x);
if (is_unsigned && unlikely(val < 0)) {
goto raise_neg_overflow;
}
return (int) val;
}
} else
#endif
if (likely(PyLong_Check(x))) {
if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
const digit* digits = ((PyLongObject*)x)->ob_digit;
switch (Py_SIZE(x)) {
case 0: return (int) 0;
case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
case 2:
if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
}
}
break;
case 3:
if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
}
}
break;
case 4:
if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
}
}
break;
}
#endif
#if CYTHON_COMPILING_IN_CPYTHON
if (unlikely(Py_SIZE(x) < 0)) {
goto raise_neg_overflow;
}
#else
{
int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
if (unlikely(result < 0))
return (int) -1;
if (unlikely(result == 1))
goto raise_neg_overflow;
}
#endif
if (sizeof(int) <= sizeof(unsigned long)) {
__PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
} else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
__PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
}
} else {
#if CYTHON_USE_PYLONG_INTERNALS
const digit* digits = ((PyLongObject*)x)->ob_digit;
switch (Py_SIZE(x)) {
case 0: return (int) 0;
case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0])
case -2:
if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
}
}
break;
case 2:
if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
}
}
break;
case -3:
if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
}
}
break;
case 3:
if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
}
}
break;
case -4:
if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
}
}
break;
case 4:
if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
__PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
} else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
}
}
break;
}
#endif
if (sizeof(int) <= sizeof(long)) {
__PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
} else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
__PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
}
}
{
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
PyErr_SetString(PyExc_RuntimeError,
"_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
int val;
PyObject *v = __Pyx_PyNumber_IntOrLong(x);
#if PY_MAJOR_VERSION < 3
if (likely(v) && !PyLong_Check(v)) {
PyObject *tmp = v;
v = PyNumber_Long(tmp);
Py_DECREF(tmp);
}
#endif
if (likely(v)) {
int one = 1; int is_little = (int)*(unsigned char *)&one;
unsigned char *bytes = (unsigned char *)&val;
int ret = _PyLong_AsByteArray((PyLongObject *)v,
bytes, sizeof(val),
is_little, !is_unsigned);
Py_DECREF(v);
if (likely(!ret))
return val;
}
#endif
return (int) -1;
}
} else {
int val;
PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
if (!tmp) return (int) -1;
val = __Pyx_PyInt_As_int(tmp);
Py_DECREF(tmp);
return val;
}
raise_overflow:
PyErr_SetString(PyExc_OverflowError,
"value too large to convert to int");
return (int) -1;
raise_neg_overflow:
PyErr_SetString(PyExc_OverflowError,
"can't convert negative value to int");
return (int) -1;
}
/* CheckBinaryVersion */
static int __Pyx_check_binary_version(void) {
char ctversion[4], rtversion[4];
PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
char message[200];
PyOS_snprintf(message, sizeof(message),
"compiletime version %s of module '%.100s' "
"does not match runtime version %s",
ctversion, __Pyx_MODULE_NAME, rtversion);
return PyErr_WarnEx(NULL, message, 1);
}
return 0;
}
/* InitStrings */
static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
while (t->p) {
#if PY_MAJOR_VERSION < 3
if (t->is_unicode) {
*t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
} else if (t->intern) {
*t->p = PyString_InternFromString(t->s);
} else {
*t->p = PyString_FromStringAndSize(t->s, t->n - 1);
}
#else
if (t->is_unicode | t->is_str) {
if (t->intern) {
*t->p = PyUnicode_InternFromString(t->s);
} else if (t->encoding) {
*t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
} else {
*t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
}
} else {
*t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
}
#endif
if (!*t->p)
return -1;
++t;
}
return 0;
}
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
}
static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
Py_ssize_t ignore;
return __Pyx_PyObject_AsStringAndSize(o, &ignore);
}
static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
#if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT)
if (
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
__Pyx_sys_getdefaultencoding_not_ascii &&
#endif
PyUnicode_Check(o)) {
#if PY_VERSION_HEX < 0x03030000
char* defenc_c;
PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
if (!defenc) return NULL;
defenc_c = PyBytes_AS_STRING(defenc);
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
{
char* end = defenc_c + PyBytes_GET_SIZE(defenc);
char* c;
for (c = defenc_c; c < end; c++) {
if ((unsigned char) (*c) >= 128) {
PyUnicode_AsASCIIString(o);
return NULL;
}
}
}
#endif
*length = PyBytes_GET_SIZE(defenc);
return defenc_c;
#else
if (__Pyx_PyUnicode_READY(o) == -1) return NULL;
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
if (PyUnicode_IS_ASCII(o)) {
*length = PyUnicode_GET_LENGTH(o);
return PyUnicode_AsUTF8(o);
} else {
PyUnicode_AsASCIIString(o);
return NULL;
}
#else
return PyUnicode_AsUTF8AndSize(o, length);
#endif
#endif
} else
#endif
#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
if (PyByteArray_Check(o)) {
*length = PyByteArray_GET_SIZE(o);
return PyByteArray_AS_STRING(o);
} else
#endif
{
char* result;
int r = PyBytes_AsStringAndSize(o, &result, length);
if (unlikely(r < 0)) {
return NULL;
} else {
return result;
}
}
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
int is_true = x == Py_True;
if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
else return PyObject_IsTrue(x);
}
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
PyNumberMethods *m;
const char *name = NULL;
PyObject *res = NULL;
#if PY_MAJOR_VERSION < 3
if (PyInt_Check(x) || PyLong_Check(x))
#else
if (PyLong_Check(x))
#endif
return __Pyx_NewRef(x);
m = Py_TYPE(x)->tp_as_number;
#if PY_MAJOR_VERSION < 3
if (m && m->nb_int) {
name = "int";
res = PyNumber_Int(x);
}
else if (m && m->nb_long) {
name = "long";
res = PyNumber_Long(x);
}
#else
if (m && m->nb_int) {
name = "int";
res = PyNumber_Long(x);
}
#endif
if (res) {
#if PY_MAJOR_VERSION < 3
if (!PyInt_Check(res) && !PyLong_Check(res)) {
#else
if (!PyLong_Check(res)) {
#endif
PyErr_Format(PyExc_TypeError,
"__%.4s__ returned non-%.4s (type %.200s)",
name, name, Py_TYPE(res)->tp_name);
Py_DECREF(res);
return NULL;
}
}
else if (!PyErr_Occurred()) {
PyErr_SetString(PyExc_TypeError,
"an integer is required");
}
return res;
}
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
Py_ssize_t ival;
PyObject *x;
#if PY_MAJOR_VERSION < 3
if (likely(PyInt_CheckExact(b))) {
if (sizeof(Py_ssize_t) >= sizeof(long))
return PyInt_AS_LONG(b);
else
return PyInt_AsSsize_t(x);
}
#endif
if (likely(PyLong_CheckExact(b))) {
#if CYTHON_USE_PYLONG_INTERNALS
const digit* digits = ((PyLongObject*)b)->ob_digit;
const Py_ssize_t size = Py_SIZE(b);
if (likely(__Pyx_sst_abs(size) <= 1)) {
ival = likely(size) ? digits[0] : 0;
if (size == -1) ival = -ival;
return ival;
} else {
switch (size) {
case 2:
if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
}
break;
case -2:
if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
}
break;
case 3:
if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
}
break;
case -3:
if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
}
break;
case 4:
if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
}
break;
case -4:
if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
}
break;
}
}
#endif
return PyLong_AsSsize_t(b);
}
x = PyNumber_Index(b);
if (!x) return -1;
ival = PyInt_AsSsize_t(x);
Py_DECREF(x);
return ival;
}
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
return PyInt_FromSize_t(ival);
}
#endif /* Py_PYTHON_H */
epigrass-2.4.7/Epigrass/epimodels.py 0000664 0000000 0000000 00000104036 12777657147 017444 0 ustar root root 0000000 0000000 # coding:utf-8
from __future__ import division
"""
Library of discrete time Epidemic models
copyright 2012 Flávio Codeco Coelho
License: GPL-v3
"""
__author__ = 'fccoelho'
from numpy.random import poisson, negative_binomial
from numpy import inf, nan, nan_to_num
import sys
import redis
import cython
redisclient = redis.StrictRedis()
vnames = {
'SIR': ['Exposed', 'Infectious', 'Susceptible'],
'SIR_s': ['Exposed', 'Infectious', 'Susceptible'],
'SIS': ['Exposed', 'Infectious', 'Susceptible'],
'SIS_s': ['Exposed', 'Infectious', 'Susceptible'],
'SEIS': ['Exposed', 'Infectious', 'Susceptible'],
'SEIS_s': ['Exposed', 'Infectious', 'Susceptible'],
'SEIR': ['Exposed', 'Infectious', 'Susceptible'],
'SEIR_s': ['Exposed', 'Infectious', 'Susceptible'],
'SIpRpS': ['Exposed', 'Infectious', 'Susceptible'],
'SIpRpS_s': ['Exposed', 'Infectious', 'Susceptible'],
'SEIpRpS': ['Exposed', 'Infectious', 'Susceptible'],
'SEIpRpS_s': ['Exposed', 'Infectious', 'Susceptible'],
'SEIpR': ['Exposed', 'Infectious', 'Susceptible'],
'SEIpR_s': ['Exposed', 'Infectious', 'Susceptible'],
'SIpR': ['Exposed', 'Infectious', 'Susceptible'],
'SIpR_s': ['Exposed', 'Infectious', 'Susceptible'],
'SIRS': ['Exposed', 'Infectious', 'Susceptible'],
'SIRS_s': ['Exposed', 'Infectious', 'Susceptible'],
'Custom': ['Exposed', 'Infectious', 'Susceptible'],
'Influenza': ('Susc_age1', 'Incub_age1', 'Subc_age1', 'Sympt_age1', 'Comp_age1',
'Susc_age2', 'Incub_age2', 'Subc_age2', 'Sympt_age2', 'Comp_age2',
'Susc_age3', 'Incub_age3', 'Subc_age3', 'Sympt_age3', 'Comp_age3',
'Susc_age4', 'Incub_age4', 'Subc_age4', 'Sympt_age4', 'Comp_age4',),
}
class Epimodel(object):
"""
Defines a library of discrete time population models
"""
@cython.locals(geocode='long', modtype='bytes', parallel='bint')
def __init__(self, geocode, modtype=b'', parallel=True):
"""
defines which models a given site will use
and set variable names accordingly.
:param modtype:
"""
self.step = selectModel(modtype)
self.geocode = geocode
self.parallel = parallel
def __call__(self, *args, **kwargs):
args = self.get_args_from_redis()
res = self.step(*args)
self.update_redis(res)
# return res
@cython.locals( simstep='long', totpop='long', theta='double', npass='double')
def get_args_from_redis(self):
"""
get updated parameters from the redis database.
:param geocode: geocode of the site running this model.
"""
inits = [int(nan_to_num(i)) for i in eval(redisclient.lindex("{}:inits".format(self.geocode), -1))]
simstep = int(redisclient.get("simstep"))
totpop = int(float(redisclient.get("{}:totpop".format(self.geocode))))
theta = int(nan_to_num(float(redisclient.get("{}:theta".format(self.geocode)))))
npass = int(float(redisclient.get("{}:npass".format(self.geocode))))
bi = redisclient.hgetall("{}:bi".format(self.geocode))
bi = {k: float(v) for k, v in bi.items()}
bp = redisclient.hgetall("{}:bp".format(self.geocode))
bp = {k: float(v) for k, v in bp.items()}
values = [float(i) for i in redisclient.lrange("{}:values".format(self.geocode), 0, -1)]
return inits, simstep, totpop, theta, npass, bi, bp, values
def update_redis(self, results):
"""
Update redis database with the results of the model
:param results: results tuple.
"""
# Site state
state, Lpos, migInf = results
redisclient.rpush("{}:inits".format(self.geocode), state) # updating inits
redisclient.rpush('{}:ts'.format(self.geocode), state)
redisclient.set('{}:Lpos'.format(self.geocode), Lpos)
totc = int(nan_to_num(float(redisclient.get('{}:totalcases'.format(self.geocode)))))
redisclient.set('{}:totalcases'.format(self.geocode), Lpos + totc)
redisclient.rpush('{}:incidence'.format(self.geocode), Lpos)
redisclient.set('{}:migInf'.format(self.geocode), migInf)
# Graph state
if Lpos > 0:
infected = int(redisclient.get("simstep"))
redisclient.rpush("epipath", (infected, self.geocode, {})) # TODO: replace empty dict with infectors
# self.parentGraph.epipath.append((self.parentGraph.simstep, self.geocode, self.infector))
# TODO: have infector be stated in terms of geocodes
@cython.locals(Type='bytes')
def selectModel(Type):
"""
Sets the model engine
"""
if Type == 'SIR':
return stepSIR
elif Type == 'SIR_s':
return stepSIR_s
elif Type == 'SIS':
return stepSIS
elif Type == 'SIS_s':
return stepSIS_s
elif Type == 'SEIS':
return stepSEIS
elif Type == 'SEIS_s':
return stepSEIS_s
elif Type == 'SEIR':
return stepSEIR
elif Type == 'SEIR_s':
return stepSEIR_s
elif Type == 'SIpRpS':
return stepSIpRpS
elif Type == 'SIpRpS_s':
return stepSIpRpS_s
elif Type == 'SEIpRpS':
return stepSEIpRpS
elif Type == 'SEIpRpS_s':
return stepSEIpRpS_s
elif Type == 'SIpR':
return stepSIpR
elif Type == 'SIpR_s':
return stepSIpR_s
elif Type == 'SEIpR':
return stepSEIpR
elif Type == 'SEIpR_s':
return stepSEIpR_s
elif Type == 'SIRS':
return stepSIRS
elif Type == 'SIRS_s':
return stepSIRS_s
elif Type == 'Influenza':
return stepFlu
elif Type == 'Custom':
# adds the user model as a method of instance self
try:
# TODO: move this import to the graph level
import CustomModel
return CustomModel.Model
except ImportError:
print "You have to Create a CustomModel.py file before you can select\nthe Custom model type"
else:
sys.exit('Model type specified in .epg file is invalid')
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepFlu(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
Flu model with classes S,E,I subclinical, I mild, I medium, I serious, deaths
"""
# Variable long names to be used in the database output.
vnames = ('Susc_age1', 'Incub_age1', 'Subc_age1', 'Sympt_age1', 'Comp_age1',
'Susc_age2', 'Incub_age2', 'Subc_age2', 'Sympt_age2', 'Comp_age2',
'Susc_age3', 'Incub_age3', 'Subc_age3', 'Sympt_age3', 'Comp_age3',
'Susc_age4', 'Incub_age4', 'Subc_age4', 'Sympt_age4', 'Comp_age4',)
if simstep == 1: # get initial values
S1, E1, Is1, Ic1, Ig1 = (bi['susc_age1'], bi['incub_age1'], bi['subc_age1'], bi['sympt_age1'], bi['comp_age1'])
S2, E2, Is2, Ic2, Ig2 = (bi['susc_age2'], bi['incub_age2'], bi['subc_age2'], bi['sympt_age2'], bi['comp_age2'])
S3, E3, Is3, Ic3, Ig3 = (bi['susc_age3'], bi['incub_age3'], bi['subc_age3'], bi['sympt_age3'], bi['comp_age3'])
S4, E4, Is4, Ic4, Ig4 = (bi['susc_age4'], bi['incub_age4'], bi['subc_age4'], bi['sympt_age4'], bi['comp_age4'])
else: # get values from last time step
S1, E1, Is1, Ic1, Ig1, S2, E2, Is2, Ic2, Ig2, S3, E3, Is3, Ic3, Ig3, S4, E4, Is4, Ic4, Ig4 = inits
N = totpop
# for k, v in bp.items():
# exec ('%s = %s' % (k, v))
alpha = bp['alpha']
beta = bp['beta']
r = bp['r']
e = bp['e']
c = bp['c']
g = bp['g']
d = bp['d']
pc1 = bp['pc1']
pc2 = bp['pc2']
pc3 = bp['pc3']
pc4 = bp['pc4']
pp1 = bp['pp1']
pp2 = bp['pp2']
pp3 = bp['pp3']
pp4 = bp['pp4']
b = bp['b']
# Vacination event
if 'vaccineNow' in bp: # TODO: add to bp when creating model
vaccineNow = bp['vaccineNow']
vaccov = bp['vaccov']
S1 -= vaccov * S1
S2 -= vaccov * S2
S3 -= vaccov * S3
S4 -= vaccov * S4
# New cases by age class
# beta=eval(values[2])
Infectantes = Ig1 + Ig2 + Ig3 + Ig4 + Ic1 + Ic2 + Ic3 + Ic4 + 0.5 * (Is1 + Is2 + Is3 + Is4) + theta
L1pos = float(beta) * S1 * (Infectantes / (N + npass)) ** alpha
L2pos = float(beta) * S2 * (Infectantes / (N + npass)) ** alpha
L3pos = float(beta) * S3 * (Infectantes / (N + npass)) ** alpha
L4pos = float(beta) * S4 * (Infectantes / (N + npass)) ** alpha
######################
Lpos = L1pos + L2pos + L3pos + L4pos
# Model
# 0-2 years old
E1pos = L1pos + (1 - e) * E1
Is1pos = (1 - (pc1 * c + (1 - pc1) * r)) * Is1 + e * E1
Ic1pos = (1 - (pp1 * g + (1 - pp1) * r)) * Ic1 + pc1 * c * Is1
Ig1pos = (1 - d) * Ig1 + pp1 * g * Ic1
S1pos = b + S1 - L1pos
# 3-14 years old
E2pos = L2pos + (1 - e) * E2
Is2pos = (1 - (pc2 * c + (1 - pc2) * r)) * Is2 + e * E2
Ic2pos = (1 - (pp2 * g + (1 - pp2) * r)) * Ic2 + pc2 * c * Is2
Ig2pos = (1 - d) * Ig2 + pp2 * g * Ic2
S2pos = b + S2 - L2pos
# 15-59 years old
E3pos = L3pos + (1 - e) * E3
Is3pos = (1 - (pc3 * c + (1 - pc3) * r)) * Is3 + e * E3
Ic3pos = (1 - (pp3 * g + (1 - pp3) * r)) * Ic3 + pc3 * c * Is3
Ig3pos = (1 - d) * Ig3 + pp3 * g * Ic3
S3pos = b + S3 - L3pos
# >60 years old
E4pos = L4pos + (1 - e) * E4
Is4pos = (1 - (pc4 * c + (1 - pc4) * r)) * Is4 + e * E4
Ic4pos = (1 - (pp4 * g + (1 - pp4) * r)) * Ic4 + pc4 * c * Is4
Ig4pos = (1 - d) * Ig4 + pp4 * g * Ic4
S4pos = b + S4 - L4pos
# Migrating infecctious
migInf = (
Ig1pos + Ig2pos + Ig3pos + Ig4pos + Ic1pos + Ic2pos + Ic3pos + Ic4pos + 0.5 * (
Is1pos + Is2pos + Is3pos + Is4pos))
# Return variable values
return [S1pos, E1pos, Is1pos, Ic1pos, Ig1pos, S2pos, E2pos, Is2pos,
Ic2pos, Ig2pos, S3pos, E3pos, Is3pos, Ic3pos, Ig3pos, S4pos,
E4pos, Is4pos, Ic4pos, Ig4pos], Lpos, migInf
@cython.locals(inits= 'object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIS, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
:param inits: tuple with initial conditions
:param simstep: step of the simulation
:param totpop: total population
:param theta: inflow of infectives parameter
:param npass: total inflow
:param bi: dictionary with state
:param bp: dictionary with parameter values
:param values: tuple of extra values
:return:
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
r = bp['r'];
b = bp['b']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + r * I
# Migrating infecctious
migInf = (Ipos)
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + r * I
# Migrating infecctious
migInf = (Ipos)
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIR, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos)
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIR:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos)
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
Defines the model SEIS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos + r * I
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SEIS:
- inits = (E,I,S)
- par = (Beta, alpha, E,r,delta,B,w,p) see docs.
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # converting between parameterizations
Lpos = negative_binomial(I, prob)
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos + r * I
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
Defines the model SEIR:
- inits = (E,I,S)
- par = (Beta, alpha, E,r,delta,B,w,p) see docs.
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos
Rpos = N - (Spos + Epos + Ipos)
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SEIR:
- inits = (E,I,S)
- par = (Beta, alpha, E,r,delta,B,w,p) see docs.
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp) # poisson(Lpos_esp)
## if theta == 0 and Lpos_esp == 0 and Lpos > 0:
## print Lpos,Lpos_esp,S,I,theta,N,parentSite.sitename
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos
Rpos = N - (Spos + Epos + Ipos)
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIpRpS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIpRpS, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + (1 - delta) * r * I
Rpos = N - (Spos + Ipos) + delta * r * I
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIpRpS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIpRpS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + (1 - delta) * r * I
Rpos = N - (Spos + Ipos) + delta * r * I
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIpRpS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
Defines the model SEIpRpS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos + (1 - delta) * r * I
Rpos = N - (Spos + Epos + Ipos) + delta * r * I
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIpRpS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SEIpRpS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos + (1 - delta) * r * I
Rpos = N - (Spos + Epos + Ipos) + delta * r * I
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIpR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIpR, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
R = N - E - I - S
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Lpos2 = p * float(beta) * R * ((I + theta) / (N + npass)) ** alpha # number of secondary Infections
# Model
Ipos = (1 - r) * I + Lpos + Lpos2
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos) - Lpos2
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos + Lpos2, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIpR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIpRs:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
p = bp['p']
R = N - E - I - S
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Lpos2_esp = p * float(beta) * R * ((I + theta) / (N + npass)) ** alpha # number of secondary Infections
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
Lpos2 = poisson(Lpos2_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
prob = I / (I + Lpos2_esp) # convertin between parameterizations
Lpos2 = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos + Lpos2
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos) - Lpos2
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos + Lpos2, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIpR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SEIpR, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
R = N - E - I - S
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Lpos2 = p * float(beta) * R * ((I + theta) / (N + npass)) ** alpha # secondary infections
# Model
Epos = (1 - e) * E + Lpos + Lpos2
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos) - Lpos2
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos + Lpos2, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIpR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SEIpRs:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
p = bp['p']
R = N - E - I - S
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Lpos2_esp = p * float(beta) * R * ((I + theta) / (N + npass)) ** alpha # secondary infections
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
Lpos2 = poisson(Lpos2_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # converting between parameterizations
Lpos = negative_binomial(I, prob)
prob = I / (I + Lpos2_esp) # converting between parameterizations
Lpos2 = negative_binomial(I, prob)
# Model
Epos = (1 - e) * E + Lpos + Lpos2
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos) - Lpos2
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos + Lpos2, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIRS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIRS, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
R = N - (E + I + S)
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + w * R
Rpos = N - (Spos + Ipos) - w * R
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIRS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIR:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
R = N - (E + I + S)
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + w * R
Rpos = N - (Spos + Ipos) - w * R
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
epigrass-2.4.7/Epigrass/epimodels.py.bak 0000664 0000000 0000000 00000104036 12730005434 020147 0 ustar root root 0000000 0000000 # coding:utf-8
from __future__ import division
"""
Library of discrete time Epidemic models
copyright 2012 Flávio Codeco Coelho
License: GPL-v3
"""
__author__ = 'fccoelho'
from numpy.random import poisson, negative_binomial
from numpy import inf, nan, nan_to_num
import sys
import redis
import cython
redisclient = redis.StrictRedis()
vnames = {
'SIR': ['Exposed', 'Infectious', 'Susceptible'],
'SIR_s': ['Exposed', 'Infectious', 'Susceptible'],
'SIS': ['Exposed', 'Infectious', 'Susceptible'],
'SIS_s': ['Exposed', 'Infectious', 'Susceptible'],
'SEIS': ['Exposed', 'Infectious', 'Susceptible'],
'SEIS_s': ['Exposed', 'Infectious', 'Susceptible'],
'SEIR': ['Exposed', 'Infectious', 'Susceptible'],
'SEIR_s': ['Exposed', 'Infectious', 'Susceptible'],
'SIpRpS': ['Exposed', 'Infectious', 'Susceptible'],
'SIpRpS_s': ['Exposed', 'Infectious', 'Susceptible'],
'SEIpRpS': ['Exposed', 'Infectious', 'Susceptible'],
'SEIpRpS_s': ['Exposed', 'Infectious', 'Susceptible'],
'SEIpR': ['Exposed', 'Infectious', 'Susceptible'],
'SEIpR_s': ['Exposed', 'Infectious', 'Susceptible'],
'SIpR': ['Exposed', 'Infectious', 'Susceptible'],
'SIpR_s': ['Exposed', 'Infectious', 'Susceptible'],
'SIRS': ['Exposed', 'Infectious', 'Susceptible'],
'SIRS_s': ['Exposed', 'Infectious', 'Susceptible'],
'Custom': ['Exposed', 'Infectious', 'Susceptible'],
'Influenza': ('Susc_age1', 'Incub_age1', 'Subc_age1', 'Sympt_age1', 'Comp_age1',
'Susc_age2', 'Incub_age2', 'Subc_age2', 'Sympt_age2', 'Comp_age2',
'Susc_age3', 'Incub_age3', 'Subc_age3', 'Sympt_age3', 'Comp_age3',
'Susc_age4', 'Incub_age4', 'Subc_age4', 'Sympt_age4', 'Comp_age4',),
}
class Epimodel(object):
"""
Defines a library of discrete time population models
"""
@cython.locals(geocode='long', modtype='bytes', parallel='bint')
def __init__(self, geocode, modtype=b'', parallel=True):
"""
defines which models a given site will use
and set variable names accordingly.
:param modtype:
"""
self.step = selectModel(modtype)
self.geocode = geocode
self.parallel = parallel
def __call__(self, *args, **kwargs):
args = self.get_args_from_redis()
res = self.step(*args)
self.update_redis(res)
# return res
@cython.locals( simstep='long', totpop='long', theta='double', npass='double')
def get_args_from_redis(self):
"""
get updated parameters from the redis database.
:param geocode: geocode of the site running this model.
"""
inits = [int(nan_to_num(i)) for i in eval(redisclient.lindex("{}:inits".format(self.geocode), -1))]
simstep = int(redisclient.get("simstep"))
totpop = int(float(redisclient.get("{}:totpop".format(self.geocode))))
theta = int(nan_to_num(float(redisclient.get("{}:theta".format(self.geocode)))))
npass = int(float(redisclient.get("{}:npass".format(self.geocode))))
bi = redisclient.hgetall("{}:bi".format(self.geocode))
bi = {k: float(v) for k, v in bi.items()}
bp = redisclient.hgetall("{}:bp".format(self.geocode))
bp = {k: float(v) for k, v in bp.items()}
values = [float(i) for i in redisclient.lrange("{}:values".format(self.geocode), 0, -1)]
return inits, simstep, totpop, theta, npass, bi, bp, values
def update_redis(self, results):
"""
Update redis database with the results of the model
:param results: results tuple.
"""
# Site state
state, Lpos, migInf = results
redisclient.rpush("{}:inits".format(self.geocode), state) # updating inits
redisclient.rpush('{}:ts'.format(self.geocode), state)
redisclient.set('{}:Lpos'.format(self.geocode), Lpos)
totc = int(nan_to_num(float(redisclient.get('{}:totalcases'.format(self.geocode)))))
redisclient.set('{}:totalcases'.format(self.geocode), Lpos + totc)
redisclient.rpush('{}:incidence'.format(self.geocode), Lpos)
redisclient.set('{}:migInf'.format(self.geocode), migInf)
# Graph state
if Lpos > 0:
infected = int(redisclient.get("simstep"))
redisclient.rpush("epipath", (infected, self.geocode, {})) # TODO: replace empty dict with infectors
# self.parentGraph.epipath.append((self.parentGraph.simstep, self.geocode, self.infector))
# TODO: have infector be stated in terms of geocodes
@cython.locals(Type='bytes')
def selectModel(Type):
"""
Sets the model engine
"""
if Type == 'SIR':
return stepSIR
elif Type == 'SIR_s':
return stepSIR_s
elif Type == 'SIS':
return stepSIS
elif Type == 'SIS_s':
return stepSIS_s
elif Type == 'SEIS':
return stepSEIS
elif Type == 'SEIS_s':
return stepSEIS_s
elif Type == 'SEIR':
return stepSEIR
elif Type == 'SEIR_s':
return stepSEIR_s
elif Type == 'SIpRpS':
return stepSIpRpS
elif Type == 'SIpRpS_s':
return stepSIpRpS_s
elif Type == 'SEIpRpS':
return stepSEIpRpS
elif Type == 'SEIpRpS_s':
return stepSEIpRpS_s
elif Type == 'SIpR':
return stepSIpR
elif Type == 'SIpR_s':
return stepSIpR_s
elif Type == 'SEIpR':
return stepSEIpR
elif Type == 'SEIpR_s':
return stepSEIpR_s
elif Type == 'SIRS':
return stepSIRS
elif Type == 'SIRS_s':
return stepSIRS_s
elif Type == 'Influenza':
return stepFlu
elif Type == 'Custom':
# adds the user model as a method of instance self
try:
# TODO: move this import to the graph level
import CustomModel
return CustomModel.Model
except ImportError:
print "You have to Create a CustomModel.py file before you can select\nthe Custom model type"
else:
sys.exit('Model type specified in .epg file is invalid')
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepFlu(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
Flu model with classes S,E,I subclinical, I mild, I medium, I serious, deaths
"""
# Variable long names to be used in the database output.
vnames = ('Susc_age1', 'Incub_age1', 'Subc_age1', 'Sympt_age1', 'Comp_age1',
'Susc_age2', 'Incub_age2', 'Subc_age2', 'Sympt_age2', 'Comp_age2',
'Susc_age3', 'Incub_age3', 'Subc_age3', 'Sympt_age3', 'Comp_age3',
'Susc_age4', 'Incub_age4', 'Subc_age4', 'Sympt_age4', 'Comp_age4',)
if simstep == 1: # get initial values
S1, E1, Is1, Ic1, Ig1 = (bi['susc_age1'], bi['incub_age1'], bi['subc_age1'], bi['sympt_age1'], bi['comp_age1'])
S2, E2, Is2, Ic2, Ig2 = (bi['susc_age2'], bi['incub_age2'], bi['subc_age2'], bi['sympt_age2'], bi['comp_age2'])
S3, E3, Is3, Ic3, Ig3 = (bi['susc_age3'], bi['incub_age3'], bi['subc_age3'], bi['sympt_age3'], bi['comp_age3'])
S4, E4, Is4, Ic4, Ig4 = (bi['susc_age4'], bi['incub_age4'], bi['subc_age4'], bi['sympt_age4'], bi['comp_age4'])
else: # get values from last time step
S1, E1, Is1, Ic1, Ig1, S2, E2, Is2, Ic2, Ig2, S3, E3, Is3, Ic3, Ig3, S4, E4, Is4, Ic4, Ig4 = inits
N = totpop
# for k, v in bp.items():
# exec ('%s = %s' % (k, v))
alpha = bp['alpha']
beta = bp['beta']
r = bp['r']
e = bp['e']
c = bp['c']
g = bp['g']
d = bp['d']
pc1 = bp['pc1']
pc2 = bp['pc2']
pc3 = bp['pc3']
pc4 = bp['pc4']
pp1 = bp['pp1']
pp2 = bp['pp2']
pp3 = bp['pp3']
pp4 = bp['pp4']
b = bp['b']
# Vacination event
if 'vaccineNow' in bp: # TODO: add to bp when creating model
vaccineNow = bp['vaccineNow']
vaccov = bp['vaccov']
S1 -= vaccov * S1
S2 -= vaccov * S2
S3 -= vaccov * S3
S4 -= vaccov * S4
# New cases by age class
# beta=eval(values[2])
Infectantes = Ig1 + Ig2 + Ig3 + Ig4 + Ic1 + Ic2 + Ic3 + Ic4 + 0.5 * (Is1 + Is2 + Is3 + Is4) + theta
L1pos = float(beta) * S1 * (Infectantes / (N + npass)) ** alpha
L2pos = float(beta) * S2 * (Infectantes / (N + npass)) ** alpha
L3pos = float(beta) * S3 * (Infectantes / (N + npass)) ** alpha
L4pos = float(beta) * S4 * (Infectantes / (N + npass)) ** alpha
######################
Lpos = L1pos + L2pos + L3pos + L4pos
# Model
# 0-2 years old
E1pos = L1pos + (1 - e) * E1
Is1pos = (1 - (pc1 * c + (1 - pc1) * r)) * Is1 + e * E1
Ic1pos = (1 - (pp1 * g + (1 - pp1) * r)) * Ic1 + pc1 * c * Is1
Ig1pos = (1 - d) * Ig1 + pp1 * g * Ic1
S1pos = b + S1 - L1pos
# 3-14 years old
E2pos = L2pos + (1 - e) * E2
Is2pos = (1 - (pc2 * c + (1 - pc2) * r)) * Is2 + e * E2
Ic2pos = (1 - (pp2 * g + (1 - pp2) * r)) * Ic2 + pc2 * c * Is2
Ig2pos = (1 - d) * Ig2 + pp2 * g * Ic2
S2pos = b + S2 - L2pos
# 15-59 years old
E3pos = L3pos + (1 - e) * E3
Is3pos = (1 - (pc3 * c + (1 - pc3) * r)) * Is3 + e * E3
Ic3pos = (1 - (pp3 * g + (1 - pp3) * r)) * Ic3 + pc3 * c * Is3
Ig3pos = (1 - d) * Ig3 + pp3 * g * Ic3
S3pos = b + S3 - L3pos
# >60 years old
E4pos = L4pos + (1 - e) * E4
Is4pos = (1 - (pc4 * c + (1 - pc4) * r)) * Is4 + e * E4
Ic4pos = (1 - (pp4 * g + (1 - pp4) * r)) * Ic4 + pc4 * c * Is4
Ig4pos = (1 - d) * Ig4 + pp4 * g * Ic4
S4pos = b + S4 - L4pos
# Migrating infecctious
migInf = (
Ig1pos + Ig2pos + Ig3pos + Ig4pos + Ic1pos + Ic2pos + Ic3pos + Ic4pos + 0.5 * (
Is1pos + Is2pos + Is3pos + Is4pos))
# Return variable values
return [S1pos, E1pos, Is1pos, Ic1pos, Ig1pos, S2pos, E2pos, Is2pos,
Ic2pos, Ig2pos, S3pos, E3pos, Is3pos, Ic3pos, Ig3pos, S4pos,
E4pos, Is4pos, Ic4pos, Ig4pos], Lpos, migInf
@cython.locals(inits= 'object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIS, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
:param inits: tuple with initial conditions
:param simstep: step of the simulation
:param totpop: total population
:param theta: inflow of infectives parameter
:param npass: total inflow
:param bi: dictionary with state
:param bp: dictionary with parameter values
:param values: tuple of extra values
:return:
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
r = bp['r'];
b = bp['b']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + r * I
# Migrating infecctious
migInf = (Ipos)
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + r * I
# Migrating infecctious
migInf = (Ipos)
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIR, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos)
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIR:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos)
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
Defines the model SEIS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos + r * I
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SEIS:
- inits = (E,I,S)
- par = (Beta, alpha, E,r,delta,B,w,p) see docs.
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # converting between parameterizations
Lpos = negative_binomial(I, prob)
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos + r * I
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
Defines the model SEIR:
- inits = (E,I,S)
- par = (Beta, alpha, E,r,delta,B,w,p) see docs.
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos
Rpos = N - (Spos + Epos + Ipos)
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SEIR:
- inits = (E,I,S)
- par = (Beta, alpha, E,r,delta,B,w,p) see docs.
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp) # poisson(Lpos_esp)
## if theta == 0 and Lpos_esp == 0 and Lpos > 0:
## print Lpos,Lpos_esp,S,I,theta,N,parentSite.sitename
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos
Rpos = N - (Spos + Epos + Ipos)
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIpRpS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIpRpS, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + (1 - delta) * r * I
Rpos = N - (Spos + Ipos) + delta * r * I
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIpRpS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIpRpS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + (1 - delta) * r * I
Rpos = N - (Spos + Ipos) + delta * r * I
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIpRpS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
Defines the model SEIpRpS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos + (1 - delta) * r * I
Rpos = N - (Spos + Epos + Ipos) + delta * r * I
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIpRpS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SEIpRpS:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
Epos = (1 - e) * E + Lpos
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos + (1 - delta) * r * I
Rpos = N - (Spos + Epos + Ipos) + delta * r * I
# Migrating infecctious
migInf = Ipos
return [Epos, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIpR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIpR, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
R = N - E - I - S
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Lpos2 = p * float(beta) * R * ((I + theta) / (N + npass)) ** alpha # number of secondary Infections
# Model
Ipos = (1 - r) * I + Lpos + Lpos2
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos) - Lpos2
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos + Lpos2, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIpR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIpRs:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
p = bp['p']
R = N - E - I - S
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Lpos2_esp = p * float(beta) * R * ((I + theta) / (N + npass)) ** alpha # number of secondary Infections
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
Lpos2 = poisson(Lpos2_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
prob = I / (I + Lpos2_esp) # convertin between parameterizations
Lpos2 = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos + Lpos2
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos) - Lpos2
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos + Lpos2, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIpR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SEIpR, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
R = N - E - I - S
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Lpos2 = p * float(beta) * R * ((I + theta) / (N + npass)) ** alpha # secondary infections
# Model
Epos = (1 - e) * E + Lpos + Lpos2
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos) - Lpos2
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos + Lpos2, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSEIpR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SEIpRs:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
beta = bp['beta'];
alpha = bp['alpha'];
e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
# w = bp['w'];
p = bp['p']
R = N - E - I - S
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
Lpos2_esp = p * float(beta) * R * ((I + theta) / (N + npass)) ** alpha # secondary infections
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
Lpos2 = poisson(Lpos2_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # converting between parameterizations
Lpos = negative_binomial(I, prob)
prob = I / (I + Lpos2_esp) # converting between parameterizations
Lpos2 = negative_binomial(I, prob)
# Model
Epos = (1 - e) * E + Lpos + Lpos2
Ipos = e * E + (1 - r) * I
Spos = S + b - Lpos
Rpos = N - (Spos + Ipos) - Lpos2
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos + Lpos2, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIRS(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None):
"""
calculates the model SIRS, and return its values (no demographics)
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
R = N - (E + I + S)
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
w = bp['w'];
# p = bp['p']
Lpos = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + w * R
Rpos = N - (Spos + Ipos) - w * R
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
@cython.locals(inits='object', simstep='long', totpop='long', theta='double', npass='double',
beta='double', alpha='double', E='double', I='double', S='double', N='long',
r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',
Ipos='double', Spos='double', Rpos='double')
def stepSIRS_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=None, dist='poisson'):
"""
Defines an stochastic model SIR:
- inits = (E,I,S)
- theta = infectious individuals from neighbor sites
"""
if simstep == 1: # get initial values
E, I, S = (bi['e'], bi['i'], bi['s'])
else:
E, I, S = inits
N = totpop
R = N - (E + I + S)
beta = bp['beta'];
alpha = bp['alpha'];
# e = bp['e'];
r = bp['r'];
# delta = bp['delta'];
b = bp['b'];
w = bp['w'];
# p = bp['p']
Lpos_esp = float(beta) * S * ((I + theta) / (N + npass)) ** alpha # Number of new cases
if dist == 'poisson':
Lpos = poisson(Lpos_esp)
elif dist == 'negbin':
prob = I / (I + Lpos_esp) # convertin between parameterizations
Lpos = negative_binomial(I, prob)
# Model
Ipos = (1 - r) * I + Lpos
Spos = S + b - Lpos + w * R
Rpos = N - (Spos + Ipos) - w * R
# Migrating infecctious
migInf = Ipos
return [0, Ipos, Spos], Lpos, migInf
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