Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: RSEM Source: http://deweylab.biostat.wisc.edu/rsem/src/ Files-Excluded: boost EBSeq/*.tar.gz Files: * Copyright: (c) 2009-2015 Bo Li bli25 [at] berkeley [dot] edu License: GPL-3 Files: debian/* Copyright: (c) 2015 Michigan State University (c) 2016 Michael R. Crusoe License: GPL-3 License: GPL-3 This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, version 3 of the License. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the full text of the GNU General Public License version 3 can be found in the file `/usr/share/common-licenses/GPL-3'. Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Source: https://github.com/samtools/samtools/archive/1.3.1.tar.gz Files: samtools-1.3/* Copyright: © 2008–2016, Genome Research Ltd. (GRL) © 2003–2006, 2008–2011, by Heng Li © 2009–2012 Broad Institute © 2010 Illumina, Inc. © 2012–2013 Peter Cock, The James Hutton Institute. License: MIT Comment: Modified version of samtools included as per upstream Files: samtools-1.3/win32/xcurses.h Copyright: Public Domain License: public-domain This file is part of PDCurses (http://pdcurses.sourceforge.net/), which is in the public domain. Files: samtools-1.3/win32/z*.h Copyright: © 1995-2005 Jean-loup Gailly and Mark Adler License: zlib This software is provided 'as-is', without any express or implied warranty. In no event will the authors be held liable for any damages arising from the use of this software. . Permission is granted to anyone to use this software for any purpose, including commercial applications, and to alter it and redistribute it freely, subject to the following restrictions: . 1. The origin of this software must not be misrepresented; you must not claim that you wrote the original software. If you use this software in a product, an acknowledgment in the product documentation would be appreciated but is not required. 2. Altered source versions must be plainly marked as such, and must not be misrepresented as being the original software. 3. This notice may not be removed or altered from any source distribution. . Jean-loup Gailly Mark Adler jloup@gzip.org madler@alumni.caltech.edu License: MIT Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.