This package was downloaded from Files: * Copyright: © 1999-2007 Stijn van Dongen License: GPL-2 This program is free software; you can redistribute it and/or modify it under the terms of version 2 of the GNU General Public License as published by the Free Software Foundation. It should be shipped with MCL in the top level directory as the file COPYING. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . If you use MCL software in your scientific research, please cite it appropriately as you would cite a journal or a book. This includes papers published in regular or electronic journals, usage of MCL as a back-end to a database that is accessible via a web interface, or inclusion of MCL in a larger framework of software that is distributed for other people for scientific use. Include one of the following citations: . Stijn van Dongen, Graph Clustering by Flow Simulation. PhD thesis, University of Utrecht, May 2000. ( ) . Stijn van Dongen. A cluster algorithm for graphs. Technical Report INS-R0010, National Research Institute for Mathematics and Computer Science in the Netherlands, Amsterdam, May 2000. ( ) . and proper attributions to mcl's home and its author, Stijn van Dongen. The publications listed above can be retrieved from the preceding URL. . If you are using some wrapper around mcl such as the blast module or the tribe module, you are asked to act likewise. . For biological applications, it is appropriate to cite, additionally, the reference article for the first application of mcl to biological data: . Enright A.J., Van Dongen S., Ouzounis C.A. An efficient algorithm for large-scale detection of protein families, Nucleic Acids Research 30(7):1575-1584 (2002). Files: src/alien/oxygen/src/mcxdeblast Copyright: © 2002-2005 Stijn van Dongen, © 2004 Jason Stajich License: GPL-2 Files: src/contrib/tribe/* Copyright: © 2002 EMBL-EBI Anton Enright License: GPL-2 Files: debian/* Copyright: © 2001-2007 Joost van Baal , © 2007-2009 Philipp Benner License: GPL-2+ The Debian packaging information is under the GPL, version 2 or later. On Debian GNU/Linux systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL' and the complete text of the GNU Lesser General Public License can be found in `/usr/share/common-licenses/LGPL'.